AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1440630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440630 MtrunA17_Chr1g0155761 96.774 403 2 5 1 395 1 400 0.0 769
Msa1440630 MtrunA17_Chr3g0142131 82.663 398 62 6 1 395 1 394 0.0 636
Msa1440630 MtrunA17_Chr6g0483401 57.808 365 122 4 30 394 19 351 1.78e-141 407
Msa1440630 MtrunA17_Chr5g0407971 41.003 339 199 1 18 356 8 345 3.63e-85 264
Msa1440630 MtrunA17_Chr5g0407991 37.958 382 198 4 18 382 6 365 2.60e-84 262
Msa1440630 MtrunA17_Chr5g0408001 37.403 385 204 4 18 383 7 373 8.47e-84 260
Msa1440630 MtrunA17_Chr5g0408041 40.331 362 209 3 23 382 13 369 5.08e-83 259
Msa1440630 MtrunA17_Chr5g0408031 39.888 356 205 3 18 371 7 355 2.36e-82 256
Msa1440630 MtrunA17_Chr1g0160171 38.764 356 194 3 1 354 1 334 6.78e-80 250
Msa1440630 MtrunA17_Chr7g0255561 38.551 345 189 2 18 356 11 338 2.59e-79 249
Msa1440630 MtrunA17_Chr7g0255581 38.551 345 189 2 18 356 11 338 2.59e-79 249
Msa1440630 MtrunA17_Chr8g0369841 38.596 342 203 4 18 356 6 343 3.97e-79 248
Msa1440630 MtrunA17_Chr8g0354121 38.643 339 196 2 18 355 10 337 3.90e-77 244
Msa1440630 MtrunA17_Chr3g0114691 36.047 344 207 2 18 361 17 347 8.95e-77 243
Msa1440630 MtrunA17_Chr1g0160181 39.003 341 194 2 23 362 20 347 1.09e-76 242
Msa1440630 MtrunA17_Chr1g0186641 36.338 355 207 5 18 370 10 347 5.44e-76 239
Msa1440630 MtrunA17_Chr5g0404811 47.348 264 113 4 129 387 1 243 1.09e-75 235
Msa1440630 MtrunA17_Chr1g0186601 35.754 358 210 4 18 373 13 352 1.68e-75 238
Msa1440630 MtrunA17_Chr1g0186611 34.734 357 213 3 18 372 13 351 3.64e-75 237
Msa1440630 MtrunA17_Chr1g0171301 34.454 357 216 4 9 362 2 343 4.76e-75 237
Msa1440630 MtrunA17_Chr3g0081421 38.841 345 194 4 14 354 9 340 2.12e-74 236
Msa1440630 MtrunA17_Chr2g0284261 35.398 339 202 2 18 356 5 326 1.02e-73 234
Msa1440630 MtrunA17_Chr6g0463971 35.795 352 205 4 15 362 10 344 1.27e-72 231
Msa1440630 MtrunA17_Chr3g0081511 38.551 345 185 4 18 355 14 338 1.79e-72 231
Msa1440630 MtrunA17_Chr8g0334761 38.081 344 197 4 12 354 1 329 3.65e-72 230
Msa1440630 MtrunA17_Chr1g0164831 34.930 355 210 5 24 378 6 339 8.56e-72 228
Msa1440630 MtrunA17_Chr1g0186561 36.857 350 202 4 18 365 13 345 3.09e-71 227
Msa1440630 MtrunA17_Chr1g0186571 34.770 348 207 5 18 363 10 339 1.28e-70 226
Msa1440630 MtrunA17_Chr3g0114731 37.952 332 189 2 23 354 20 334 1.82e-70 226
Msa1440630 MtrunA17_Chr7g0271561 35.045 331 207 1 24 354 10 332 9.61e-69 221
Msa1440630 MtrunA17_Chr1g0182291 36.364 341 193 3 18 354 12 332 2.13e-68 220
Msa1440630 MtrunA17_Chr2g0310441 36.461 373 213 8 24 388 13 369 6.82e-68 219
Msa1440630 MtrunA17_Chr4g0059311 34.024 338 207 4 25 361 15 337 7.71e-68 218
Msa1440630 MtrunA17_Chr3g0114711 34.492 374 192 4 18 354 11 368 1.47e-67 219
Msa1440630 MtrunA17_Chr3g0129601 33.511 376 212 4 6 368 14 364 5.05e-66 214
Msa1440630 MtrunA17_Chr1g0184221 32.133 361 206 4 18 361 13 351 1.24e-65 213
Msa1440630 MtrunA17_Chr7g0263101 35.988 339 187 4 24 354 16 332 1.59e-65 213
Msa1440630 MtrunA17_Chr3g0114701 37.612 335 195 2 23 356 11 332 1.12e-64 211
Msa1440630 MtrunA17_Chr2g0278561 33.938 386 227 4 10 385 4 371 1.69e-64 211
Msa1440630 MtrunA17_Chr8g0383731 35.329 334 205 2 23 355 7 330 9.65e-64 207
Msa1440630 MtrunA17_Chr1g0160111 32.923 325 209 2 30 354 16 331 2.35e-63 207
Msa1440630 MtrunA17_Chr3g0126101 35.220 318 186 4 38 354 23 321 7.04e-62 202
Msa1440630 MtrunA17_Chr3g0129571 33.134 335 209 5 23 354 9 331 5.56e-61 201
Msa1440630 MtrunA17_Chr8g0334771 36.337 344 203 3 12 354 1 329 3.48e-60 199
Msa1440630 MtrunA17_Chr3g0129591 33.832 334 208 3 23 354 7 329 4.42e-60 198
Msa1440630 MtrunA17_Chr4g0073241 32.984 382 216 9 24 395 11 362 3.80e-59 196
Msa1440630 MtrunA17_Chr8g0334751 35.676 370 212 6 24 392 14 358 1.78e-58 194
Msa1440630 MtrunA17_Chr5g0413961 35.530 349 204 3 11 357 2 331 3.78e-58 193
Msa1440630 MtrunA17_Chr2g0290611 35.952 331 199 3 26 356 17 334 4.52e-57 191
Msa1440630 MtrunA17_Chr2g0278541 35.362 345 200 4 24 360 15 344 1.71e-55 187
Msa1440630 MtrunA17_Chr2g0278551 34.294 347 213 3 26 372 17 348 4.40e-55 186
Msa1440630 MtrunA17_Chr5g0413941 31.579 342 217 4 16 356 2 327 1.65e-54 184
Msa1440630 MtrunA17_Chr5g0413921 30.347 346 224 3 18 362 4 333 9.99e-53 179
Msa1440630 MtrunA17_Chr4g0050891 32.081 346 213 3 10 349 2 331 5.91e-52 177
Msa1440630 MtrunA17_Chr3g0129581 32.036 334 214 3 23 354 7 329 6.57e-52 177
Msa1440630 MtrunA17_Chr1g0150151 33.828 337 199 5 25 355 15 333 5.11e-51 175
Msa1440630 MtrunA17_Chr4g0051021 30.270 370 244 3 26 394 19 375 8.97e-51 174
Msa1440630 MtrunA17_Chr5g0404801 68.908 119 37 0 16 134 2 120 2.57e-50 165
Msa1440630 MtrunA17_Chr2g0332001 32.440 336 202 4 26 356 43 358 4.15e-50 173
Msa1440630 MtrunA17_Chr5g0413951 30.514 331 213 5 26 355 12 326 9.72e-50 171
Msa1440630 MtrunA17_Chr5g0428881 29.101 378 247 4 15 383 9 374 2.43e-49 171
Msa1440630 MtrunA17_Chr1g0177221 34.629 283 165 4 1 282 1 264 2.61e-48 165
Msa1440630 MtrunA17_Chr5g0413931 30.514 331 213 5 26 355 11 325 1.70e-46 162
Msa1440630 MtrunA17_Chr4g0050941 31.746 378 241 4 24 395 15 381 1.73e-46 163
Msa1440630 MtrunA17_Chr4g0056081 31.054 351 212 10 25 365 18 348 3.32e-43 154
Msa1440630 MtrunA17_Chr4g0050881 29.679 374 224 8 15 375 3 350 7.64e-43 153
Msa1440630 MtrunA17_Chr7g0227921 31.548 336 204 5 25 355 15 329 8.78e-43 153
Msa1440630 MtrunA17_Chr4g0050931 29.598 348 188 3 14 356 5 300 2.22e-41 148
Msa1440630 MtrunA17_Chr1g0211801 32.685 257 157 3 26 282 16 256 1.29e-40 145
Msa1440630 MtrunA17_Chr5g0441761 27.576 330 219 2 25 354 18 327 1.38e-39 144
Msa1440630 MtrunA17_Chr5g0399281 30.792 341 215 8 18 354 5 328 4.64e-39 143
Msa1440630 MtrunA17_Chr5g0429001 29.126 309 207 3 88 395 18 315 6.62e-38 139
Msa1440630 MtrunA17_Chr3g0084091 31.752 274 169 3 101 373 10 266 2.23e-37 137
Msa1440630 MtrunA17_Chr4g0051001 29.217 332 218 4 5 332 12 330 3.71e-37 137
Msa1440630 MtrunA17_Chr6g0451211 28.704 324 198 7 41 355 32 331 7.70e-37 137
Msa1440630 MtrunA17_Chr6g0451201 29.859 355 224 6 41 395 32 361 4.20e-34 130
Msa1440630 MtrunA17_Chr6g0451251 30.321 343 217 6 41 380 32 355 2.15e-32 125
Msa1440630 MtrunA17_Chr3g0126091 25.723 346 233 8 24 362 14 342 1.15e-31 123
Msa1440630 MtrunA17_Chr6g0451171 28.354 328 213 7 30 355 21 328 2.17e-31 122
Msa1440630 MtrunA17_Chr2g0278021 35.586 222 135 2 135 356 1 214 4.65e-31 119
Msa1440630 MtrunA17_Chr6g0451261 27.124 306 198 5 35 335 25 310 2.17e-30 123
Msa1440630 MtrunA17_Chr8g0334721 38.194 144 84 2 247 390 2 140 7.36e-29 110
Msa1440630 MtrunA17_Chr8g0334711 34.272 213 123 4 18 229 7 203 6.80e-28 109
Msa1440630 MtrunA17_Chr6g0451191 28.054 221 141 3 135 355 1 203 6.06e-21 90.9
Msa1440630 MtrunA17_Chr8g0334731 29.224 219 119 5 13 229 3 187 5.46e-19 84.7
Msa1440630 MtrunA17_Chr1g0177231 38.947 95 57 1 268 362 15 108 4.33e-16 74.3
Msa1440630 MtrunA17_Chr2g0278031 39.815 108 65 0 26 133 19 126 9.99e-15 70.5
Msa1440630 MtrunA17_Chr4g0050911 35.938 128 76 1 106 233 16 137 2.27e-14 70.5
Msa1440630 MtrunA17_Chr1g0182261 33.077 130 84 3 230 356 83 212 2.27e-14 72.0
Msa1440630 MtrunA17_Chr1g0172891 40.541 74 44 0 289 362 13 86 3.01e-14 68.9
Msa1440630 MtrunA17_Chr1g0211811 42.254 71 41 0 284 354 1 71 5.00e-14 67.4
Msa1440630 MtrunA17_Chr4g0050921 33.333 102 68 0 234 335 3 104 6.81e-14 68.2
Msa1440630 MtrunA17_Chr1g0172881 28.667 150 83 4 134 282 23 149 1.08e-11 62.8
Msa1440630 MtrunA17_Chr8g0334741 28.571 140 71 3 247 382 2 116 7.10e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440630 AT1G75500.1 74.687 399 87 7 1 395 1 389 0.0 589
Msa1440630 AT1G75500.2 74.687 399 87 7 1 395 1 389 0.0 589
Msa1440630 AT3G53210.1 52.632 380 161 3 16 390 4 369 6.50e-142 409
Msa1440630 AT3G18200.2 56.131 367 144 2 16 382 29 378 4.10e-141 407
Msa1440630 AT3G53210.3 57.143 266 100 2 16 281 4 255 1.85e-105 312
Msa1440630 AT3G53210.2 50.333 300 130 3 96 390 27 312 4.88e-102 305
Msa1440630 AT3G18200.1 50.943 265 113 2 118 382 1 248 1.07e-85 261
Msa1440630 AT3G45870.1 42.169 332 187 3 18 349 8 334 1.44e-77 245
Msa1440630 AT4G30420.2 37.371 388 217 7 18 395 5 376 2.54e-77 244
Msa1440630 AT5G45370.2 37.326 359 222 3 18 375 16 372 2.58e-77 244
Msa1440630 AT5G45370.4 37.326 359 222 3 18 375 16 372 2.58e-77 244
Msa1440630 AT5G45370.1 37.709 358 198 3 18 375 16 348 7.16e-77 242
Msa1440630 AT4G30420.1 36.911 382 215 6 24 395 1 366 1.02e-76 242
Msa1440630 AT5G07050.1 38.136 354 196 3 23 368 19 357 2.42e-74 237
Msa1440630 AT2G39510.1 37.838 333 191 2 24 355 10 327 7.48e-73 232
Msa1440630 AT3G45870.8 41.587 315 179 3 18 332 8 317 1.78e-71 227
Msa1440630 AT1G09380.1 38.602 329 191 1 24 352 10 327 3.06e-71 228
Msa1440630 AT4G08290.1 35.733 375 228 2 18 392 9 370 3.41e-71 228
Msa1440630 AT1G21890.1 34.262 359 230 1 23 381 12 364 5.70e-71 228
Msa1440630 AT1G44800.1 34.188 351 210 2 18 362 7 342 8.25e-71 227
Msa1440630 AT4G08300.1 34.384 349 215 3 18 365 7 342 2.54e-70 226
Msa1440630 AT4G19185.1 39.169 337 198 4 23 356 22 354 6.48e-70 225
Msa1440630 AT3G30340.1 33.828 337 209 3 26 362 15 337 2.64e-68 220
Msa1440630 AT2G40900.1 36.522 345 199 3 12 356 1 325 2.88e-68 221
Msa1440630 AT2G37460.1 35.674 356 205 6 18 369 11 346 3.63e-66 215
Msa1440630 AT1G43650.1 33.144 353 216 2 23 373 8 342 5.31e-63 206
Msa1440630 AT5G13670.1 33.628 339 211 3 18 355 4 329 3.49e-62 205
Msa1440630 AT4G01440.1 35.294 323 194 3 41 363 29 336 2.70e-61 202
Msa1440630 AT4G01430.1 33.934 333 205 4 24 354 11 330 1.52e-60 200
Msa1440630 AT1G01070.1 33.626 342 212 3 16 356 10 337 8.08e-60 198
Msa1440630 AT1G11450.3 35.030 334 200 4 24 356 18 335 1.17e-59 197
Msa1440630 AT3G45870.9 42.264 265 148 3 18 282 8 267 2.35e-59 194
Msa1440630 AT1G21890.2 35.161 310 195 1 23 332 12 315 4.05e-59 196
Msa1440630 AT3G56620.1 33.721 344 203 3 12 352 1 322 3.57e-58 194
Msa1440630 AT4G01440.3 35.959 292 172 3 41 332 29 305 7.71e-56 186
Msa1440630 AT1G11450.5 36.156 307 179 4 51 356 1 291 1.32e-55 186
Msa1440630 AT5G64700.1 31.686 344 227 3 29 372 15 350 1.24e-54 184
Msa1440630 AT1G11460.1 33.234 334 207 3 24 356 18 336 3.44e-54 182
Msa1440630 AT1G11450.2 36.577 298 172 4 60 356 3 284 3.69e-54 181
Msa1440630 AT4G28040.1 31.471 340 203 5 18 354 4 316 1.66e-53 181
Msa1440630 AT4G28040.5 31.471 340 203 5 18 354 4 316 1.66e-53 181
Msa1440630 AT4G28040.3 31.471 340 203 5 18 354 4 316 1.66e-53 181
Msa1440630 AT4G28040.4 31.471 340 203 5 18 354 4 316 1.66e-53 181
Msa1440630 AT4G28040.2 31.471 340 203 5 18 354 4 316 1.66e-53 181
Msa1440630 AT4G01430.2 33.119 311 193 4 24 332 11 308 8.13e-52 176
Msa1440630 AT1G11450.4 34.194 310 187 4 24 332 18 311 8.54e-51 173
Msa1440630 AT4G19185.2 36.604 265 161 4 95 356 16 276 3.55e-50 172
Msa1440630 AT2G37450.2 33.140 344 185 8 24 363 11 313 5.29e-50 172
Msa1440630 AT5G45370.6 34.926 272 174 3 105 375 1 270 2.09e-49 168
Msa1440630 AT5G45370.5 34.926 272 174 3 105 375 1 270 2.09e-49 168
Msa1440630 AT1G25270.1 32.934 334 209 2 24 356 5 324 7.68e-49 169
Msa1440630 AT1G68170.2 30.607 379 243 4 14 391 5 364 3.18e-48 168
Msa1440630 AT1G01070.2 33.793 290 177 3 68 356 15 290 3.45e-48 166
Msa1440630 AT4G08290.2 36.604 265 153 3 18 281 9 259 5.22e-48 165
Msa1440630 AT1G68170.1 31.250 368 233 4 25 391 6 354 1.84e-47 166
Msa1440630 AT5G40210.1 31.953 338 189 10 25 357 16 317 5.86e-47 164
Msa1440630 AT3G28130.2 32.653 343 202 10 22 356 13 334 5.96e-47 164
Msa1440630 AT4G01450.2 35.238 315 183 2 41 354 29 323 1.02e-46 164
Msa1440630 AT3G30340.2 32.685 257 159 3 26 282 15 257 1.11e-45 159
Msa1440630 AT1G11450.1 36.822 258 146 4 100 356 2 243 4.07e-45 157
Msa1440630 AT4G01450.1 34.471 293 171 2 41 332 29 301 5.09e-45 159
Msa1440630 AT5G40240.2 28.846 364 233 4 1 357 13 357 9.22e-45 159
Msa1440630 AT5G40240.1 30.000 340 212 4 25 357 23 343 1.04e-44 159
Msa1440630 AT5G40240.3 30.000 340 212 4 25 357 23 343 1.04e-44 159
Msa1440630 AT3G28050.1 31.267 371 223 10 25 387 15 361 1.20e-44 158
Msa1440630 AT4G01440.4 36.777 242 138 3 41 282 29 255 4.09e-44 154
Msa1440630 AT3G28100.1 30.286 350 219 8 25 370 17 345 1.19e-43 155
Msa1440630 AT5G40230.1 29.223 373 223 7 25 384 24 368 1.79e-43 155
Msa1440630 AT3G28130.5 33.594 256 149 6 105 356 10 248 2.42e-42 149
Msa1440630 AT3G28130.1 33.594 256 149 6 105 356 10 248 2.42e-42 149
Msa1440630 AT1G70260.1 29.462 353 233 5 24 370 14 356 8.18e-41 148
Msa1440630 AT3G28080.1 30.473 338 210 6 25 356 17 335 9.99e-41 148
Msa1440630 AT3G28070.2 29.740 269 168 5 105 371 8 257 2.55e-40 144
Msa1440630 AT3G28080.5 31.621 253 158 3 105 356 8 246 4.51e-40 144
Msa1440630 AT3G28080.7 31.621 253 158 3 105 356 8 246 4.51e-40 144
Msa1440630 AT3G28080.8 31.621 253 158 3 105 356 8 246 4.51e-40 144
Msa1440630 AT3G28080.6 31.621 253 158 3 105 356 8 246 4.51e-40 144
Msa1440630 AT3G45870.5 38.426 216 128 3 134 349 49 259 1.92e-39 143
Msa1440630 AT3G28070.1 29.740 269 168 5 105 371 100 349 2.64e-39 144
Msa1440630 AT3G28080.2 31.621 253 158 3 105 356 89 327 2.74e-39 144
Msa1440630 AT4G01450.4 34.156 243 139 2 41 282 29 251 2.67e-38 139
Msa1440630 AT4G01440.5 32.365 241 148 3 123 363 3 228 3.92e-38 138
Msa1440630 AT4G01440.2 32.365 241 148 3 123 363 3 228 3.92e-38 138
Msa1440630 AT5G47470.1 27.920 351 225 7 9 354 17 344 2.60e-37 139
Msa1440630 AT5G47470.2 27.920 351 225 7 9 354 45 372 3.34e-37 139
Msa1440630 AT5G47470.3 27.920 351 225 7 9 354 45 372 4.26e-37 139
Msa1440630 AT2G37450.3 34.100 261 148 6 107 363 1 241 5.97e-37 135
Msa1440630 AT5G45370.3 32.780 241 159 3 136 375 74 312 8.77e-37 136
Msa1440630 AT1G43650.2 31.274 259 160 1 23 281 8 248 9.42e-36 132
Msa1440630 AT4G15540.1 28.011 357 224 5 25 380 20 344 1.79e-34 130
Msa1440630 AT4G15540.2 28.011 357 224 5 25 380 20 344 1.79e-34 130
Msa1440630 AT4G16620.1 27.966 354 230 6 30 375 20 356 8.57e-34 129
Msa1440630 AT3G45870.6 37.186 199 120 3 134 332 49 242 1.40e-33 126
Msa1440630 AT3G45870.7 37.186 199 120 3 134 332 49 242 1.40e-33 126
Msa1440630 AT4G01450.3 35.071 211 116 2 41 250 29 219 4.15e-33 124
Msa1440630 AT5G64700.2 32.500 240 154 3 29 268 15 246 3.07e-32 122
Msa1440630 AT3G45870.2 37.234 188 113 3 162 349 1 183 1.24e-30 117
Msa1440630 AT1G60050.1 27.554 323 221 3 38 356 29 342 1.28e-30 121
Msa1440630 AT3G28130.3 30.973 226 135 6 135 356 1 209 3.62e-30 116
Msa1440630 AT3G28070.3 28.261 230 148 4 105 332 100 314 6.77e-29 115
Msa1440630 AT4G01430.3 31.220 205 127 3 151 354 2 193 1.60e-28 112
Msa1440630 AT3G28070.5 26.778 239 154 5 135 371 1 220 1.30e-27 109
Msa1440630 AT3G28080.9 28.251 223 145 3 135 356 1 209 1.64e-27 109
Msa1440630 AT2G37450.1 32.479 234 134 6 134 363 61 274 6.42e-27 109
Msa1440630 AT4G24980.1 28.302 318 147 8 38 355 3 239 8.75e-26 105
Msa1440630 AT3G28130.4 31.783 258 148 9 22 271 13 250 2.20e-24 101
Msa1440630 AT3G28100.3 31.076 251 153 6 25 271 17 251 1.01e-23 99.8
Msa1440630 AT4G16620.4 27.536 276 176 5 107 375 1 259 1.71e-23 99.0
Msa1440630 AT4G16620.2 27.536 276 176 5 107 375 1 259 1.71e-23 99.0
Msa1440630 AT3G45870.3 36.913 149 89 3 134 282 49 192 1.94e-21 92.0
Msa1440630 AT3G45870.4 36.735 147 88 3 136 282 4 145 2.03e-21 90.5
Msa1440630 AT3G28100.2 37.342 158 95 3 25 180 17 172 4.35e-21 92.0
Msa1440630 AT3G28130.6 36.943 157 91 4 22 174 13 165 2.10e-20 89.4
Msa1440630 AT4G16620.3 29.279 222 139 4 30 250 20 224 5.79e-20 89.4
Msa1440630 AT3G28080.3 36.025 161 93 3 25 180 17 172 7.97e-17 80.9
Msa1440630 AT3G28080.3 33.784 74 48 1 283 356 209 281 8.84e-11 62.8
Msa1440630 AT3G28080.4 46.053 76 41 0 105 180 8 83 4.90e-16 77.0
Msa1440630 AT3G28080.4 33.784 74 48 1 283 356 120 192 5.13e-11 62.4

Find 113 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACACCAATGATTGATTT+TGG 0.075897 tig0029094:-26985 Msa1440630:CDS
CAAACTAGTGTTGGTTAATT+AGG 0.160697 tig0029094:+28400 None:intergenic
CTTGGATGTCTTTATCTAAT+TGG 0.160867 tig0029094:-26922 Msa1440630:CDS
TTTGCTAGGCTTCAATTATT+TGG 0.186662 tig0029094:-28374 Msa1440630:five_prime_UTR
TCTTCCATTTGCTTATTTCT+TGG 0.199338 tig0029094:-28096 Msa1440630:CDS
TATTCTACAATGGCTGATTT+AGG 0.205011 tig0029094:-28299 Msa1440630:exon
TTTCTTTATGGTTTGATTTA+CGG 0.229174 tig0029094:-25565 Msa1440630:three_prime_UTR
TATGTTAGTTAATTTCTTTA+TGG 0.244766 tig0029094:-25577 Msa1440630:three_prime_UTR
CTTAAACGGGGTCATCATTT+TGG 0.252308 tig0029094:-25397 Msa1440630:three_prime_UTR
ACTTCCTATACATGTTTCTT+TGG 0.256420 tig0029094:-26823 Msa1440630:CDS
ATCAGTGATTACATTATATC+AGG 0.276969 tig0029094:-27073 Msa1440630:CDS
TTGCATTTGCAGTACAAATA+TGG 0.283549 tig0029094:-26598 Msa1440630:CDS
GCAATTTCTTCTTATTGCTT+TGG 0.291149 tig0029094:-26794 Msa1440630:CDS
TGGGAGTGGTTTCAAAAGTA+TGG 0.304445 tig0029094:-25464 Msa1440630:three_prime_UTR
AAATTTCTCAAGATTAGAAT+TGG 0.317880 tig0029094:-25484 Msa1440630:three_prime_UTR
ATCATGGCTTCTATTGCTTT+AGG 0.322920 tig0029094:-26509 Msa1440630:CDS
CTAATTAACCAACACTAGTT+TGG 0.326664 tig0029094:-28399 Msa1440630:five_prime_UTR
GATGCTTTAGCGTGGCTTGC+GGG 0.332227 tig0029094:+25850 None:intergenic
CAGAGGAAGTTTAAATTAAT+CGG 0.338959 tig0029094:+27626 None:intergenic
CTAACTAACCGCGTATAAAA+TGG 0.340348 tig0029094:+26717 None:intergenic
GGTTTCAAAAGTATGGTAAT+TGG 0.340685 tig0029094:-25457 Msa1440630:three_prime_UTR
CCTTTATATTACAGGATCAT+TGG 0.349819 tig0029094:-25988 Msa1440630:intron
CCACTATTTAAGTGACTACT+TGG 0.366846 tig0029094:+27027 None:intergenic
CACAAATTGTGACTCTTAAA+CGG 0.370000 tig0029094:-25411 Msa1440630:three_prime_UTR
ATCAAGGTTTCTACTTGCTT+GGG 0.374867 tig0029094:-27343 Msa1440630:CDS
AATCAAGGTTTCTACTTGCT+TGG 0.382223 tig0029094:-27344 Msa1440630:CDS
TCTTAGTAGATTATTTAGAT+TGG 0.388213 tig0029094:-25704 Msa1440630:three_prime_UTR
CACACAAGCATGGTACTATA+AGG 0.389716 tig0029094:+25759 None:intergenic
ATTGTTTGTCTTGGTCTGCT+TGG 0.391168 tig0029094:-26897 Msa1440630:CDS
CTTAGTAGATTATTTAGATT+GGG 0.394466 tig0029094:-25703 Msa1440630:three_prime_UTR
TTGCAGGGAGTGGTGGCATC+TGG 0.399814 tig0029094:-26623 Msa1440630:intron
GCCCTGCAGTTTGGTTATGC+TGG 0.404103 tig0029094:-28209 Msa1440630:CDS
TAATTGGACATTGTTTGTCT+TGG 0.407693 tig0029094:-26906 Msa1440630:CDS
GCCATGTTGGCCCTGCAGTT+TGG 0.410120 tig0029094:-28218 Msa1440630:CDS
ACAAATTGTGACTCTTAAAC+GGG 0.414592 tig0029094:-25410 Msa1440630:three_prime_UTR
GCTACAACAAAAGTTTGAAC+AGG 0.438205 tig0029094:+26533 None:intergenic
AACAGGATTACAGCAAATCA+AGG 0.453990 tig0029094:-27359 Msa1440630:intron
GCAATGATGTTCCTATAGAC+AGG 0.454821 tig0029094:+28131 None:intergenic
TTGAAAGAAATGCTCAGGCT+TGG 0.458050 tig0029094:-26768 Msa1440630:CDS
ATGGGAACATGTTGTAATAG+TGG 0.458354 tig0029094:-25662 Msa1440630:three_prime_UTR
GGACTTGGACTATATATAGT+TGG 0.461139 tig0029094:+27048 None:intergenic
CCCTGCCATTACATTTCTCA+TGG 0.470693 tig0029094:-27273 Msa1440630:CDS
AATTTCTCAAGATTAGAATT+GGG 0.471413 tig0029094:-25483 Msa1440630:three_prime_UTR
CCAAGTAGTCACTTAAATAG+TGG 0.472865 tig0029094:-27027 Msa1440630:CDS
ATTGTCCCAAAATCAATCAT+TGG 0.475219 tig0029094:+26979 None:intergenic
TTCAAGAGCTGCACTTAACA+TGG 0.475828 tig0029094:-28174 Msa1440630:CDS
TTAATTACTAAAGCTAATAG+TGG 0.477006 tig0029094:-25280 Msa1440630:three_prime_UTR
AAGTCCAAAGAAACATGTAT+AGG 0.477885 tig0029094:+26819 None:intergenic
CAAATATGGTGCATTGATAG+AGG 0.486474 tig0029094:-26584 Msa1440630:CDS
GACGAGCAGGATACTTCTTA+AGG 0.487109 tig0029094:+26854 None:intergenic
GATGGAATTGCTAAAGTAGC+AGG 0.489379 tig0029094:-27120 Msa1440630:CDS
TTGGTTAATTAGGAAAAGAA+AGG 0.496181 tig0029094:+28410 None:intergenic
TTTAAGTGACTACTTGGACT+TGG 0.498895 tig0029094:+27033 None:intergenic
AGAAATAAGCAAATGGAAGA+AGG 0.501047 tig0029094:+28099 None:intergenic
TGGACTATACTTTGTGCTGT+GGG 0.502383 tig0029094:-25947 Msa1440630:CDS
TTCTCATGGCAGTCATACTA+AGG 0.503575 tig0029094:-27259 Msa1440630:intron
TTTAGGAGAAGAGTTCTACT+TGG 0.503735 tig0029094:-26492 Msa1440630:CDS
GCCATGAGAAATGTAATGGC+AGG 0.506658 tig0029094:+27272 None:intergenic
GTTAATTAGGAAAAGAAAGG+TGG 0.513729 tig0029094:+28413 None:intergenic
AGGTTTCTACTTGCTTGGGT+TGG 0.514004 tig0029094:-27339 Msa1440630:CDS
ATAGTGGATGTCACTAAAAG+TGG 0.518080 tig0029094:-25646 Msa1440630:three_prime_UTR
AGGAAAAGAAAGGTGGGAAG+TGG 0.518388 tig0029094:+28420 None:intergenic
AACCAGCATAACCAAACTGC+AGG 0.522465 tig0029094:+28207 None:intergenic
AGTATGGTAATTGGCAAGCA+TGG 0.522694 tig0029094:-25448 Msa1440630:three_prime_UTR
GAGAAGAGTTCTACTTGGGC+GGG 0.532422 tig0029094:-26487 Msa1440630:intron
ATGTCACTTGGTGATGCAAA+GGG 0.532729 tig0029094:-26958 Msa1440630:CDS
GTGAGATTGAATCGAAAGGA+TGG 0.534056 tig0029094:-27138 Msa1440630:CDS
TGTATTGCTGATGCAAAGGT+AGG 0.537203 tig0029094:+27305 None:intergenic
CTCAAGATTAGAATTGGGAG+TGG 0.539135 tig0029094:-25478 Msa1440630:three_prime_UTR
CTGGACTATACTTTGTGCTG+TGG 0.541801 tig0029094:-25948 Msa1440630:CDS
GAAGTGACAGAAAGACGAGC+AGG 0.543364 tig0029094:+26841 None:intergenic
TGATACACTGCAACAAACAC+TGG 0.547318 tig0029094:+26557 None:intergenic
TTAATTCAATTATTCTACAA+TGG 0.548981 tig0029094:-28309 Msa1440630:exon
CATCATTATCATGACATGGA+AGG 0.551192 tig0029094:-25511 Msa1440630:three_prime_UTR
TATTAATTTGCAGGGAGTGG+TGG 0.551473 tig0029094:-26630 Msa1440630:intron
GTATTGCTGATGCAAAGGTA+GGG 0.556287 tig0029094:+27306 None:intergenic
TTAGGAGAAGAGTTCTACTT+GGG 0.557775 tig0029094:-26491 Msa1440630:CDS
GCAGGATACTTCTTAAGGAC+AGG 0.559573 tig0029094:+26859 None:intergenic
ATCATTATCATGACATGGAA+GGG 0.562114 tig0029094:-25510 Msa1440630:three_prime_UTR
AGAGAAGAAATTATTTGCAA+AGG 0.564376 tig0029094:-25914 Msa1440630:CDS
TAAAGCAATAGAAGCCATGA+TGG 0.564411 tig0029094:+26511 None:intergenic
TCAGCTGCATGTGGCCATGT+TGG 0.564609 tig0029094:-28231 Msa1440630:CDS
ACCAAACTGCAGGGCCAACA+TGG 0.565314 tig0029094:+28217 None:intergenic
CAGCTTCTTCTAAGAGAATG+TGG 0.569037 tig0029094:-28274 Msa1440630:CDS
AATGTCACTTGGTGATGCAA+AGG 0.570694 tig0029094:-26959 Msa1440630:CDS
GGTGCAGTGTTGATAGTAGC+TGG 0.570883 tig0029094:-25967 Msa1440630:CDS
TAGTGGATGTCACTAAAAGT+GGG 0.571839 tig0029094:-25645 Msa1440630:three_prime_UTR
TCTGTTGAAGAAGATAGGAA+TGG 0.578628 tig0029094:+25817 None:intergenic
TTAATTAGGAAAAGAAAGGT+GGG 0.579788 tig0029094:+28414 None:intergenic
TCAGTGATTACATTATATCA+GGG 0.580478 tig0029094:-27072 Msa1440630:CDS
TAATTACTAAAGCTAATAGT+GGG 0.588040 tig0029094:-25279 Msa1440630:three_prime_UTR
TGATGCTTTAGCGTGGCTTG+CGG 0.596033 tig0029094:+25849 None:intergenic
CAATGATGTTCCTATAGACA+GGG 0.596068 tig0029094:+28132 None:intergenic
ATATATATATAAAAGCATAT+GGG 0.599668 tig0029094:+25599 None:intergenic
GACTGCCATGAGAAATGTAA+TGG 0.601131 tig0029094:+27268 None:intergenic
GTTCTGTATTGCTGATGCAA+AGG 0.604446 tig0029094:+27301 None:intergenic
ATAATGACCTAGATGCATGC+TGG 0.606908 tig0029094:-25330 Msa1440630:three_prime_UTR
GGAGAAGAGTTCTACTTGGG+CGG 0.607421 tig0029094:-26488 Msa1440630:CDS
GTGCAGCTCTTGAAACAACA+TGG 0.618096 tig0029094:+28183 None:intergenic
AGGAAGTTTAAATTAATCGG+TGG 0.623492 tig0029094:+27629 None:intergenic
GCAAGTGAGATTGAATCGAA+AGG 0.625916 tig0029094:-27142 Msa1440630:CDS
TCAAGAGCTGCACTTAACAT+GGG 0.631283 tig0029094:-28173 Msa1440630:CDS
CCATGAGAAATGTAATGGCA+GGG 0.635566 tig0029094:+27273 None:intergenic
TATCACAACACACACAAGCA+TGG 0.644681 tig0029094:+25749 None:intergenic
TAGTCATCATTATCATGACA+TGG 0.647380 tig0029094:-25515 Msa1440630:three_prime_UTR
CATATGGGACTAATTTCACA+AGG 0.653189 tig0029094:+25614 None:intergenic
TATTGCTGATGCAAAGGTAG+GGG 0.668908 tig0029094:+27307 None:intergenic
ATATGGTGCATTGATAGAGG+AGG 0.677817 tig0029094:-26581 Msa1440630:CDS
ACCAGCATAACCAAACTGCA+GGG 0.678569 tig0029094:+28208 None:intergenic
GGACTATACTTTGTGCTGTG+GGG 0.683443 tig0029094:-25946 Msa1440630:CDS
GAGTGAGTGATGCTTTAGCG+TGG 0.695699 tig0029094:+25842 None:intergenic
AGTGGATGTCACTAAAAGTG+GGG 0.697940 tig0029094:-25644 Msa1440630:three_prime_UTR
CAAATTGTGACTCTTAAACG+GGG 0.725158 tig0029094:-25409 Msa1440630:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAATTTTATAAATTAA+AGG - tig0029094:26130-26149 Msa1440630:intron 0.0%
!!! AAAAATTATTAAAGGTATAA+AGG + tig0029094:26225-26244 None:intergenic 10.0%
!! TCAACATAAAAAATTATTAA+AGG + tig0029094:26233-26252 None:intergenic 10.0%
!!! ATTTTTTTTTATTAATTTGC+AGG - tig0029094:26977-26996 Msa1440630:CDS 10.0%
!!! TTTTTTTTTATTAATTTGCA+GGG - tig0029094:26978-26997 Msa1440630:CDS 10.0%
!!! GAGTTTTTTTTTTTTTTTTA+TGG - tig0029094:27935-27954 Msa1440630:intron 10.0%
!!! ATATATATATAAAAGCATAT+GGG + tig0029094:28020-28039 None:intergenic 10.0%
!!! TATATATATATAAAAGCATA+TGG + tig0029094:28021-28040 None:intergenic 10.0%
!! TTAATTCAATTATTCTACAA+TGG - tig0029094:25307-25326 Msa1440630:three_prime_UTR 15.0%
!! AATATTAATGAAATTGTTAG+AGG + tig0029094:25562-25581 None:intergenic 15.0%
!! ATAATGTACAAAAATTTCAT+AGG + tig0029094:25590-25609 None:intergenic 15.0%
!! AATCCAATATAAAAAAACTT+TGG + tig0029094:25627-25646 None:intergenic 15.0%
!!! TTTTTTATGTTGAATTAAAC+AGG - tig0029094:26240-26259 Msa1440630:intron 15.0%
!!! AAATTTTGCATGAATTTTTT+TGG + tig0029094:26439-26458 None:intergenic 15.0%
!! TATCATAAACATTTGAATTA+AGG + tig0029094:27178-27197 None:intergenic 15.0%
!!! AAGTTTTTGTTACTAATTTA+GGG - tig0029094:27460-27479 Msa1440630:intron 15.0%
!! TGAATAAAGTAAAATCAAAA+GGG + tig0029094:27596-27615 None:intergenic 15.0%
!! ATGAATAAAGTAAAATCAAA+AGG + tig0029094:27597-27616 None:intergenic 15.0%
!! TATGTTAGTTAATTTCTTTA+TGG - tig0029094:28039-28058 Msa1440630:intron 15.0%
!!! CAACCAAAGTTTTTTTATAT+TGG - tig0029094:25621-25640 Msa1440630:three_prime_UTR 20.0%
!!! AACGTGTCAATTTTTATAAA+AGG + tig0029094:25742-25761 None:intergenic 20.0%
!!! GAACAATATTTTGTGTAATT+GGG - tig0029094:26518-26537 Msa1440630:CDS 20.0%
!!! AACAATATTTTGTGTAATTG+GGG - tig0029094:26519-26538 Msa1440630:CDS 20.0%
!! GTATTTACTAAACAACTTAT+CGG - tig0029094:27336-27355 Msa1440630:CDS 20.0%
!!! TTTGATTGCGATTTTATTTT+TGG - tig0029094:27370-27389 Msa1440630:intron 20.0%
!!! CAAGTTTTTGTTACTAATTT+AGG - tig0029094:27459-27478 Msa1440630:intron 20.0%
!! TCTTAGTAGATTATTTAGAT+TGG - tig0029094:27912-27931 Msa1440630:intron 20.0%
!! CTTAGTAGATTATTTAGATT+GGG - tig0029094:27913-27932 Msa1440630:intron 20.0%
!!! TTTCTTTATGGTTTGATTTA+CGG - tig0029094:28051-28070 Msa1440630:intron 20.0%
!! AAATTTCTCAAGATTAGAAT+TGG - tig0029094:28132-28151 Msa1440630:CDS 20.0%
!! AATTTCTCAAGATTAGAATT+GGG - tig0029094:28133-28152 Msa1440630:CDS 20.0%
!! TTAATTACTAAAGCTAATAG+TGG - tig0029094:28336-28355 Msa1440630:five_prime_UTR 20.0%
!! TAATTACTAAAGCTAATAGT+GGG - tig0029094:28337-28356 Msa1440630:five_prime_UTR 20.0%
! TTAATTAGGAAAAGAAAGGT+GGG + tig0029094:25205-25224 None:intergenic 25.0%
! TTGGTTAATTAGGAAAAGAA+AGG + tig0029094:25209-25228 None:intergenic 25.0%
!! TTTTCCAAGAAATAAGCAAA+TGG + tig0029094:25527-25546 None:intergenic 25.0%
! TAATGAAATTGTTAGAGGAA+TGG + tig0029094:25557-25576 None:intergenic 25.0%
!! TATTTAGTTCCCGTTAAAAT+GGG + tig0029094:25770-25789 None:intergenic 25.0%
!! ATATTTAGTTCCCGTTAAAA+TGG + tig0029094:25771-25790 None:intergenic 25.0%
! CAGAGGAAGTTTAAATTAAT+CGG + tig0029094:25993-26012 None:intergenic 25.0%
!! GGAACAATATTTTGTGTAAT+TGG - tig0029094:26517-26536 Msa1440630:CDS 25.0%
! ATCAGTGATTACATTATATC+AGG - tig0029094:26543-26562 Msa1440630:CDS 25.0%
! TCAGTGATTACATTATATCA+GGG - tig0029094:26544-26563 Msa1440630:CDS 25.0%
! TAATTTAAACCTAATAGTCG+TGG + tig0029094:26925-26944 None:intergenic 25.0%
! TTGAATTAAGGATCGTAATT+AGG + tig0029094:27166-27185 None:intergenic 25.0%
! GTAACAAAAACTTGATCATA+GGG + tig0029094:27453-27472 None:intergenic 25.0%
! AGTAACAAAAACTTGATCAT+AGG + tig0029094:27454-27473 None:intergenic 25.0%
! TTGAAGCAAAAAATCATCAT+AGG - tig0029094:27499-27518 Msa1440630:intron 25.0%
! TAGGATATACTACTATTGAA+TGG - tig0029094:27518-27537 Msa1440630:intron 25.0%
! ATAATACCCCTTTATATTAC+AGG - tig0029094:27620-27639 Msa1440630:CDS 25.0%
! AATGATCCTGTAATATAAAG+GGG + tig0029094:27629-27648 None:intergenic 25.0%
! CAATGATCCTGTAATATAAA+GGG + tig0029094:27630-27649 None:intergenic 25.0%
! AGAGAAGAAATTATTTGCAA+AGG - tig0029094:27702-27721 Msa1440630:intron 25.0%
GTTAATTAGGAAAAGAAAGG+TGG + tig0029094:25206-25225 None:intergenic 30.0%
!! CAAACTAGTGTTGGTTAATT+AGG + tig0029094:25219-25238 None:intergenic 30.0%
CTAATTAACCAACACTAGTT+TGG - tig0029094:25217-25236 Msa1440630:three_prime_UTR 30.0%
TTTGCTAGGCTTCAATTATT+TGG - tig0029094:25242-25261 Msa1440630:three_prime_UTR 30.0%
! TATTCTACAATGGCTGATTT+AGG - tig0029094:25317-25336 Msa1440630:three_prime_UTR 30.0%
AGAAATAAGCAAATGGAAGA+AGG + tig0029094:25520-25539 None:intergenic 30.0%
! TCTTCCATTTGCTTATTTCT+TGG - tig0029094:25520-25539 Msa1440630:three_prime_UTR 30.0%
TTCCTTAGCATATTCTCTTA+AGG - tig0029094:25645-25664 Msa1440630:three_prime_UTR 30.0%
!! ACGTTTAGTTCCCATTTTAA+CGG - tig0029094:25757-25776 Msa1440630:three_prime_UTR 30.0%
! TGTTTCTTTTCCTTTTGTTC+AGG - tig0029094:25955-25974 Msa1440630:CDS 30.0%
AGGAAGTTTAAATTAATCGG+TGG + tig0029094:25990-26009 None:intergenic 30.0%
!!! TTCTTTTTTCTCGCACTTAT+TGG - tig0029094:26017-26036 Msa1440630:intron 30.0%
!!! TCTTTTTTCTCGCACTTATT+GGG - tig0029094:26018-26037 Msa1440630:intron 30.0%
TCATGCAAAATTTCATCAAC+AGG - tig0029094:26446-26465 Msa1440630:intron 30.0%
!! ACAACACCAATGATTGATTT+TGG - tig0029094:26631-26650 Msa1440630:intron 30.0%
!! CAACACCAATGATTGATTTT+GGG - tig0029094:26632-26651 Msa1440630:intron 30.0%
ATTGTCCCAAAATCAATCAT+TGG + tig0029094:26640-26659 None:intergenic 30.0%
CTTGGATGTCTTTATCTAAT+TGG - tig0029094:26694-26713 Msa1440630:intron 30.0%
TAATTGGACATTGTTTGTCT+TGG - tig0029094:26710-26729 Msa1440630:intron 30.0%
ACTTCCTATACATGTTTCTT+TGG - tig0029094:26793-26812 Msa1440630:CDS 30.0%
AAGTCCAAAGAAACATGTAT+AGG + tig0029094:26800-26819 None:intergenic 30.0%
GCAATTTCTTCTTATTGCTT+TGG - tig0029094:26822-26841 Msa1440630:CDS 30.0%
!!! TTTTATTAATTTGCAGGGAG+TGG - tig0029094:26983-27002 Msa1440630:CDS 30.0%
TTGCATTTGCAGTACAAATA+TGG - tig0029094:27018-27037 Msa1440630:CDS 30.0%
TAAGGATCGTAATTAGGATT+AGG + tig0029094:27160-27179 None:intergenic 30.0%
GTATCATTACATAAGATACG+TGG + tig0029094:27265-27284 None:intergenic 30.0%
AATGACCTAAAGTGAGATAA+AGG - tig0029094:27294-27313 Msa1440630:CDS 30.0%
ATGACCTAAAGTGAGATAAA+GGG - tig0029094:27295-27314 Msa1440630:CDS 30.0%
AATACCCTTTATCTCACTTT+AGG + tig0029094:27302-27321 None:intergenic 30.0%
CCAATGATCCTGTAATATAA+AGG + tig0029094:27631-27650 None:intergenic 30.0%
CCTTTATATTACAGGATCAT+TGG - tig0029094:27628-27647 Msa1440630:CDS 30.0%
! CATTTTCTGTTGAAGAAGAT+AGG + tig0029094:27807-27826 None:intergenic 30.0%
TAGTCATCATTATCATGACA+TGG - tig0029094:28101-28120 Msa1440630:CDS 30.0%
ATCATTATCATGACATGGAA+GGG - tig0029094:28106-28125 Msa1440630:CDS 30.0%
! GGTTTCAAAAGTATGGTAAT+TGG - tig0029094:28159-28178 Msa1440630:CDS 30.0%
CACAAATTGTGACTCTTAAA+CGG - tig0029094:28205-28224 Msa1440630:CDS 30.0%
ACAAATTGTGACTCTTAAAC+GGG - tig0029094:28206-28225 Msa1440630:CDS 30.0%
AGCAAAAACCAAACTAGTGT+TGG + tig0029094:25228-25247 None:intergenic 35.0%
!!! ACACTAGTTTGGTTTTTGCT+AGG - tig0029094:25228-25247 Msa1440630:three_prime_UTR 35.0%
! CATGCAGCTGAAATTTTTCA+GGG + tig0029094:25376-25395 None:intergenic 35.0%
! ACATGCAGCTGAAATTTTTC+AGG + tig0029094:25377-25396 None:intergenic 35.0%
TGAAAAATTTCAGCTGCATG+TGG - tig0029094:25376-25395 Msa1440630:three_prime_UTR 35.0%
!! AACTTGTTTTCCCTGTCTAT+AGG - tig0029094:25474-25493 Msa1440630:three_prime_UTR 35.0%
CAATGATGTTCCTATAGACA+GGG + tig0029094:25487-25506 None:intergenic 35.0%
TGCCTTAAGAGAATATGCTA+AGG + tig0029094:25650-25669 None:intergenic 35.0%
!! CGTTTAGTTCCCATTTTAAC+GGG - tig0029094:25758-25777 Msa1440630:three_prime_UTR 35.0%
! TCTTTTCCTTTTGTTCAGGA+AGG - tig0029094:25959-25978 Msa1440630:CDS 35.0%
TAAGTGCGAGAAAAAAGAAC+TGG + tig0029094:26016-26035 None:intergenic 35.0%
AACAGGATTACAGCAAATCA+AGG - tig0029094:26257-26276 Msa1440630:intron 35.0%
AATCAAGGTTTCTACTTGCT+TGG - tig0029094:26272-26291 Msa1440630:intron 35.0%
ATCAAGGTTTCTACTTGCTT+GGG - tig0029094:26273-26292 Msa1440630:intron 35.0%
GGACTTGGACTATATATAGT+TGG + tig0029094:26571-26590 None:intergenic 35.0%
TTTAAGTGACTACTTGGACT+TGG + tig0029094:26586-26605 None:intergenic 35.0%
CCACTATTTAAGTGACTACT+TGG + tig0029094:26592-26611 None:intergenic 35.0%
CCAAGTAGTCACTTAAATAG+TGG - tig0029094:26589-26608 Msa1440630:CDS 35.0%
GTGATGCAAAGGGAAAAAAT+TGG - tig0029094:26668-26687 Msa1440630:intron 35.0%
AAGGGAAAAAATTGGACACT+TGG - tig0029094:26676-26695 Msa1440630:intron 35.0%
!! GGTTTTTGAAAGAAATGCTC+AGG - tig0029094:26843-26862 Msa1440630:CDS 35.0%
! AGCTTTCACCATTTTATACG+CGG - tig0029094:26891-26910 Msa1440630:CDS 35.0%
CTAACTAACCGCGTATAAAA+TGG + tig0029094:26902-26921 None:intergenic 35.0%
! CAAATATGGTGCATTGATAG+AGG - tig0029094:27032-27051 Msa1440630:CDS 35.0%
GCTACAACAAAAGTTTGAAC+AGG + tig0029094:27086-27105 None:intergenic 35.0%
!! AACTTTTGTTGTAGCCATCA+TGG - tig0029094:27091-27110 Msa1440630:CDS 35.0%
TAAAGCAATAGAAGCCATGA+TGG + tig0029094:27108-27127 None:intergenic 35.0%
ATCATGGCTTCTATTGCTTT+AGG - tig0029094:27107-27126 Msa1440630:CDS 35.0%
TTTAGGAGAAGAGTTCTACT+TGG - tig0029094:27124-27143 Msa1440630:CDS 35.0%
TTAGGAGAAGAGTTCTACTT+GGG - tig0029094:27125-27144 Msa1440630:CDS 35.0%
TAATTGCTTTGCGAGTGTTT+AGG + tig0029094:27213-27232 None:intergenic 35.0%
TTATGTAATGATACCGCCTT+CGG - tig0029094:27271-27290 Msa1440630:CDS 35.0%
TCTGTTGAAGAAGATAGGAA+TGG + tig0029094:27802-27821 None:intergenic 35.0%
ATGGGAACATGTTGTAATAG+TGG - tig0029094:27954-27973 Msa1440630:intron 35.0%
!! ATAGTGGATGTCACTAAAAG+TGG - tig0029094:27970-27989 Msa1440630:intron 35.0%
! TAGTGGATGTCACTAAAAGT+GGG - tig0029094:27971-27990 Msa1440630:intron 35.0%
CATATGGGACTAATTTCACA+AGG + tig0029094:28005-28024 None:intergenic 35.0%
CATCATTATCATGACATGGA+AGG - tig0029094:28105-28124 Msa1440630:CDS 35.0%
CAAATTGTGACTCTTAAACG+GGG - tig0029094:28207-28226 Msa1440630:CDS 35.0%
! ATTTTTACCAGCATGCATCT+AGG + tig0029094:28296-28315 None:intergenic 35.0%
! CAGCTTCTTCTAAGAGAATG+TGG - tig0029094:25342-25361 Msa1440630:three_prime_UTR 40.0%
TTCAAGAGCTGCACTTAACA+TGG - tig0029094:25442-25461 Msa1440630:three_prime_UTR 40.0%
TCAAGAGCTGCACTTAACAT+GGG - tig0029094:25443-25462 Msa1440630:three_prime_UTR 40.0%
GCAATGATGTTCCTATAGAC+AGG + tig0029094:25488-25507 None:intergenic 40.0%
TATTGCTGATGCAAAGGTAG+GGG + tig0029094:26312-26331 None:intergenic 40.0%
GTATTGCTGATGCAAAGGTA+GGG + tig0029094:26313-26332 None:intergenic 40.0%
TGTATTGCTGATGCAAAGGT+AGG + tig0029094:26314-26333 None:intergenic 40.0%
GTTCTGTATTGCTGATGCAA+AGG + tig0029094:26318-26337 None:intergenic 40.0%
CCATGAGAAATGTAATGGCA+GGG + tig0029094:26346-26365 None:intergenic 40.0%
GACTGCCATGAGAAATGTAA+TGG + tig0029094:26351-26370 None:intergenic 40.0%
TTCTCATGGCAGTCATACTA+AGG - tig0029094:26357-26376 Msa1440630:intron 40.0%
GCAAGTGAGATTGAATCGAA+AGG - tig0029094:26474-26493 Msa1440630:intron 40.0%
GTGAGATTGAATCGAAAGGA+TGG - tig0029094:26478-26497 Msa1440630:intron 40.0%
GATGGAATTGCTAAAGTAGC+AGG - tig0029094:26496-26515 Msa1440630:CDS 40.0%
!!! GATTTTGGGACAATGTCACT+TGG - tig0029094:26646-26665 Msa1440630:intron 40.0%
!! AATGTCACTTGGTGATGCAA+AGG - tig0029094:26657-26676 Msa1440630:intron 40.0%
!! ATGTCACTTGGTGATGCAAA+GGG - tig0029094:26658-26677 Msa1440630:intron 40.0%
ATTGTTTGTCTTGGTCTGCT+TGG - tig0029094:26719-26738 Msa1440630:intron 40.0%
TTGAAAGAAATGCTCAGGCT+TGG - tig0029094:26848-26867 Msa1440630:CDS 40.0%
GTTAGTTAGCCACGACTATT+AGG - tig0029094:26913-26932 Msa1440630:CDS 40.0%
!! TATTAATTTGCAGGGAGTGG+TGG - tig0029094:26986-27005 Msa1440630:CDS 40.0%
! ATATGGTGCATTGATAGAGG+AGG - tig0029094:27035-27054 Msa1440630:CDS 40.0%
TGATACACTGCAACAAACAC+TGG + tig0029094:27062-27081 None:intergenic 40.0%
TGGACTATACTTTGTGCTGT+GGG - tig0029094:27669-27688 Msa1440630:intron 40.0%
CACACAAGCATGGTACTATA+AGG + tig0029094:27860-27879 None:intergenic 40.0%
TATCACAACACACACAAGCA+TGG + tig0029094:27870-27889 None:intergenic 40.0%
AGTGGATGTCACTAAAAGTG+GGG - tig0029094:27972-27991 Msa1440630:intron 40.0%
CTCAAGATTAGAATTGGGAG+TGG - tig0029094:28138-28157 Msa1440630:CDS 40.0%
TGGGAGTGGTTTCAAAAGTA+TGG - tig0029094:28152-28171 Msa1440630:CDS 40.0%
AGTATGGTAATTGGCAAGCA+TGG - tig0029094:28168-28187 Msa1440630:CDS 40.0%
! CTTAAACGGGGTCATCATTT+TGG - tig0029094:28219-28238 Msa1440630:CDS 40.0%
ATAATGACCTAGATGCATGC+TGG - tig0029094:28286-28305 Msa1440630:CDS 40.0%
AGGAAAAGAAAGGTGGGAAG+TGG + tig0029094:25199-25218 None:intergenic 45.0%
ACCAGCATAACCAAACTGCA+GGG + tig0029094:25411-25430 None:intergenic 45.0%
AACCAGCATAACCAAACTGC+AGG + tig0029094:25412-25431 None:intergenic 45.0%
GTGCAGCTCTTGAAACAACA+TGG + tig0029094:25436-25455 None:intergenic 45.0%
GTCTGTCCTTCCTGAACAAA+AGG + tig0029094:25968-25987 None:intergenic 45.0%
CGAGAAAAAAGAACTGGCAG+AGG + tig0029094:26010-26029 None:intergenic 45.0%
AGGTTTCTACTTGCTTGGGT+TGG - tig0029094:26277-26296 Msa1440630:intron 45.0%
CCCTGCCATTACATTTCTCA+TGG - tig0029094:26343-26362 Msa1440630:intron 45.0%
GCCATGAGAAATGTAATGGC+AGG + tig0029094:26347-26366 None:intergenic 45.0%
GCAGGATACTTCTTAAGGAC+AGG + tig0029094:26760-26779 None:intergenic 45.0%
GACGAGCAGGATACTTCTTA+AGG + tig0029094:26765-26784 None:intergenic 45.0%
! CAGGCTTGGATTTTTCACTC+TGG - tig0029094:26862-26881 Msa1440630:CDS 45.0%
! GCTTGGATTTTTCACTCTGG+TGG - tig0029094:26865-26884 Msa1440630:CDS 45.0%
ACTTTAGGTCATTCCGAAGG+CGG + tig0029094:27287-27306 None:intergenic 45.0%
CTCACTTTAGGTCATTCCGA+AGG + tig0029094:27290-27309 None:intergenic 45.0%
CTGGACTATACTTTGTGCTG+TGG - tig0029094:27668-27687 Msa1440630:intron 45.0%
GGACTATACTTTGTGCTGTG+GGG - tig0029094:27670-27689 Msa1440630:intron 45.0%
!! AACGGGGTCATCATTTTGGT+CGG - tig0029094:28223-28242 Msa1440630:CDS 45.0%
!!! AGTTTTTTTTTTTTTTTTAT+GGG - tig0029094:27936-27955 Msa1440630:intron 5.0%
GAAGTGACAGAAAGACGAGC+AGG + tig0029094:26778-26797 None:intergenic 50.0%
GGAGAAGAGTTCTACTTGGG+CGG - tig0029094:27128-27147 Msa1440630:CDS 50.0%
GAGAAGAGTTCTACTTGGGC+GGG - tig0029094:27129-27148 Msa1440630:CDS 50.0%
!! GGTGCAGTGTTGATAGTAGC+TGG - tig0029094:27649-27668 Msa1440630:intron 50.0%
TGATGCTTTAGCGTGGCTTG+CGG + tig0029094:27770-27789 None:intergenic 50.0%
GAGTGAGTGATGCTTTAGCG+TGG + tig0029094:27777-27796 None:intergenic 50.0%
TCAGCTGCATGTGGCCATGT+TGG - tig0029094:25385-25404 Msa1440630:three_prime_UTR 55.0%
ACCAAACTGCAGGGCCAACA+TGG + tig0029094:25402-25421 None:intergenic 55.0%
GCCCTGCAGTTTGGTTATGC+TGG - tig0029094:25407-25426 Msa1440630:three_prime_UTR 55.0%
! GATGCTTTAGCGTGGCTTGC+GGG + tig0029094:27769-27788 None:intergenic 55.0%
GCCATGTTGGCCCTGCAGTT+TGG - tig0029094:25398-25417 Msa1440630:three_prime_UTR 60.0%
TTGCAGGGAGTGGTGGCATC+TGG - tig0029094:26993-27012 Msa1440630:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0029094 gene 25195 28443 25195 ID=Msa1440630;Name=Msa1440630
tig0029094 mRNA 25195 28443 25195 ID=Msa1440630-mRNA-1;Parent=Msa1440630;Name=Msa1440630-mRNA-1;_AED=0.05;_eAED=0.05;_QI=131|1|1|1|1|1|6|612|395
tig0029094 exon 25195 25996 25195 ID=Msa1440630-mRNA-1:exon:12338;Parent=Msa1440630-mRNA-1
tig0029094 exon 26488 26639 26488 ID=Msa1440630-mRNA-1:exon:12337;Parent=Msa1440630-mRNA-1
tig0029094 exon 26726 27170 26726 ID=Msa1440630-mRNA-1:exon:12336;Parent=Msa1440630-mRNA-1
tig0029094 exon 27260 27376 27260 ID=Msa1440630-mRNA-1:exon:12335;Parent=Msa1440630-mRNA-1
tig0029094 exon 27599 27661 27599 ID=Msa1440630-mRNA-1:exon:12334;Parent=Msa1440630-mRNA-1
tig0029094 exon 28092 28443 28092 ID=Msa1440630-mRNA-1:exon:12333;Parent=Msa1440630-mRNA-1
tig0029094 five_prime_UTR 28313 28443 28313 ID=Msa1440630-mRNA-1:five_prime_utr;Parent=Msa1440630-mRNA-1
tig0029094 CDS 28092 28312 28092 ID=Msa1440630-mRNA-1:cds;Parent=Msa1440630-mRNA-1
tig0029094 CDS 27599 27661 27599 ID=Msa1440630-mRNA-1:cds;Parent=Msa1440630-mRNA-1
tig0029094 CDS 27260 27376 27260 ID=Msa1440630-mRNA-1:cds;Parent=Msa1440630-mRNA-1
tig0029094 CDS 26726 27170 26726 ID=Msa1440630-mRNA-1:cds;Parent=Msa1440630-mRNA-1
tig0029094 CDS 26488 26639 26488 ID=Msa1440630-mRNA-1:cds;Parent=Msa1440630-mRNA-1
tig0029094 CDS 25807 25996 25807 ID=Msa1440630-mRNA-1:cds;Parent=Msa1440630-mRNA-1
tig0029094 three_prime_UTR 25195 25806 25195 ID=Msa1440630-mRNA-1:three_prime_utr;Parent=Msa1440630-mRNA-1
Gene Sequence

>Msa1440630

ATGGCTGATTTAGGTTCAGCTTCTTCTAAGAGAATGTGGTGTTCTATCCCTGAAAAATTTCAGCTGCATGTGGCCATGTTGGCCCTGCAGTTTGGTTATGCTGGTTTCCATGTTGTTTCAAGAGCTGCACTTAACATGGGAGTTAGCAAACTTGTTTTCCCTGTCTATAGGAACATCATTGCTTTGCTTCTCCTTCTTCCATTTGCTTATTTCTTGGAAAAGAAGGACAGACCACCGATTAATTTAAACTTCCTCTGCCAGTTCTTTTTTCTCGCACTTATTGGGATTACAGCAAATCAAGGTTTCTACTTGCTTGGGTTGGATAACACATCCCCTACCTTTGCATCAGCAATACAGAACTCTGTCCCTGCCATTACATTTCTCATGGCAGTCATACTAAGGATAGAGCAAGTGAGATTGAATCGAAAGGATGGAATTGCTAAAGTAGCAGGAACAATATTTTGTGTAATTGGGGCATCAGTGATTACATTATATCAGGGACCAACTATATATAGTCCAAGTCCAAGTAGTCACTTAAATAGTGGCATAACAGAAGTAACAACAACAACACCAATGATTGATTTTGGGACAATGTCACTTGGTGATGCAAAGGGAAAAAATTGGACACTTGGATGTCTTTATCTAATTGGACATTGTTTGTCTTGGTCTGCTTGGCTTGTGTTTCAAGCACCTGTCCTTAAGAAGTATCCTGCTCGTCTTTCTGTCACTTCCTATACATGTTTCTTTGGACTTTTGCAATTTCTTCTTATTGCTTTGGTTTTTGAAAGAAATGCTCAGGCTTGGATTTTTCACTCTGGTGGTGAAGCTTTCACCATTTTATACGCGGGAGTGGTGGCATCTGGAATTGCATTTGCAGTACAAATATGGTGCATTGATAGAGGAGGTCCAGTGTTTGTTGCAGTGTATCAACCTGTTCAAACTTTTGTTGTAGCCATCATGGCTTCTATTGCTTTAGGAGAAGAGTTCTACTTGGGCGGGATCATTGGTGCAGTGTTGATAGTAGCTGGACTATACTTTGTGCTGTGGGGTAAAAGTGAAGAGAAGAAATTATTTGCAAAGGAACAGCTTGCAATTGCATCAACAGAACATAGCATCATTAGACCCGCAAGCCACGCTAAAGCATCACTCACTCAACCATTCCTATCTTCTTCAACAGAAAATGTTTGA

Protein sequence

>Msa1440630

MADLGSASSKRMWCSIPEKFQLHVAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKDRPPINLNFLCQFFFLALIGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAVILRIEQVRLNRKDGIAKVAGTIFCVIGASVITLYQGPTIYSPSPSSHLNSGITEVTTTTPMIDFGTMSLGDAKGKNWTLGCLYLIGHCLSWSAWLVFQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVFERNAQAWIFHSGGEAFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASIALGEEFYLGGIIGAVLIVAGLYFVLWGKSEEKKLFAKEQLAIASTEHSIIRPASHAKASLTQPFLSSSTENV*