AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0652650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652650 MtrunA17_Chr4g0046371 95.892 706 21 3 1 703 1 701 0.0 1397
Msa0652650 MtrunA17_Chr2g0282961 76.957 447 88 4 2 436 1 444 0.0 687
Msa0652650 MtrunA17_Chr2g0282961 39.423 208 98 11 468 652 408 610 1.55e-23 105
Msa0652650 MtrunA17_Chr4g0029671 48.066 543 248 12 42 556 53 589 2.19e-148 451
Msa0652650 MtrunA17_Chr2g0326281 41.679 655 331 15 42 661 55 693 2.29e-145 444
Msa0652650 MtrunA17_Chr8g0385791 46.963 428 198 5 18 434 41 450 2.20e-124 390
Msa0652650 MtrunA17_Chr2g0276781 48.101 395 179 6 22 405 2 381 4.26e-117 366
Msa0652650 MtrunA17_Chr4g0009751 44.725 436 205 11 43 466 19 430 3.81e-113 354
Msa0652650 MtrunA17_Chr5g0433301 47.769 381 167 6 33 397 12 376 1.17e-108 348
Msa0652650 MtrunA17_Chr2g0285461 48.942 378 160 8 43 404 23 383 2.54e-108 349
Msa0652650 MtrunA17_Chr8g0346711 48.907 366 163 9 43 400 29 378 1.29e-107 342
Msa0652650 MtrunA17_Chr4g0070181 48.485 363 165 6 27 380 7 356 6.65e-106 347
Msa0652650 MtrunA17_Chr3g0109391 47.989 373 162 6 41 397 22 378 8.16e-106 341
Msa0652650 MtrunA17_Chr2g0301251 48.901 364 166 5 25 380 5 356 1.30e-105 347
Msa0652650 MtrunA17_Chr8g0376771 47.480 377 166 8 43 404 23 382 2.42e-105 342
Msa0652650 MtrunA17_Chr7g0239061 42.453 424 207 9 32 443 3 401 9.20e-104 332
Msa0652650 MtrunA17_Chr1g0156321 47.297 370 161 7 43 397 43 393 2.46e-103 335
Msa0652650 MtrunA17_Chr8g0389081 48.034 356 147 6 43 380 32 367 2.98e-101 334
Msa0652650 MtrunA17_Chr2g0326761 41.316 380 165 9 43 379 11 375 9.91e-84 279
Msa0652650 MtrunA17_Chr1g0199681 40.157 381 179 10 38 379 87 457 8.07e-79 266
Msa0652650 MtrunA17_Chr1g0181211 33.456 544 271 18 41 508 23 551 2.14e-75 256
Msa0652650 MtrunA17_Chr4g0028971 39.791 382 174 8 43 379 12 382 1.56e-74 254
Msa0652650 MtrunA17_Chr7g0264171 37.340 391 184 12 39 379 27 406 1.13e-70 241
Msa0652650 MtrunA17_Chr7g0264161 40.064 312 173 6 52 360 1 301 1.81e-66 221
Msa0652650 MtrunA17_Chr8g0356211 41.887 265 141 4 159 421 2 255 1.12e-64 217
Msa0652650 MtrunA17_Chr3g0115271 35.980 403 204 9 36 399 12 399 1.70e-62 219
Msa0652650 MtrunA17_Chr5g0417281 35.652 345 190 8 43 379 11 331 1.37e-61 215
Msa0652650 MtrunA17_Chr5g0424931 33.693 371 190 11 43 379 19 367 4.59e-58 205
Msa0652650 MtrunA17_Chr2g0289221 33.626 342 191 9 29 360 6 321 8.13e-51 181
Msa0652650 MtrunA17_Chr1g0178011 30.347 346 213 8 43 379 12 338 5.40e-48 176
Msa0652650 MtrunA17_Chr5g0417211 32.831 332 182 9 43 361 12 315 8.34e-48 174
Msa0652650 MtrunA17_Chr5g0436761 32.378 349 200 11 43 379 12 336 5.66e-46 170
Msa0652650 MtrunA17_Chr2g0277461 31.549 355 204 10 38 379 8 336 4.75e-42 159
Msa0652650 MtrunA17_Chr5g0424801 29.201 363 218 12 43 389 12 351 7.88e-38 145
Msa0652650 MtrunA17_Chr5g0424741 29.333 375 227 12 43 385 12 380 7.94e-37 145
Msa0652650 MtrunA17_Chr5g0425261 29.268 369 210 13 43 389 12 351 3.20e-35 137
Msa0652650 MtrunA17_Chr5g0425661 33.628 226 124 5 31 247 25 233 7.42e-34 129
Msa0652650 MtrunA17_Chr2g0277531 30.976 297 164 11 43 324 20 290 5.46e-32 126
Msa0652650 MtrunA17_Chr5g0424791 29.487 156 90 5 90 245 14 149 2.08e-12 65.5
Msa0652650 MtrunA17_Chr7g0276471 40.217 92 54 1 149 240 116 206 2.60e-12 69.7
Msa0652650 MtrunA17_Chr8g0345771 40.206 97 56 2 149 245 170 264 4.38e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652650 AT2G33860.1 56.840 519 180 7 1 507 1 487 0.0 577
Msa0652650 AT5G60450.2 41.354 694 320 17 5 664 3 643 1.15e-146 446
Msa0652650 AT5G60450.1 42.378 656 291 17 43 664 65 667 3.40e-143 438
Msa0652650 AT2G33860.2 57.660 359 122 2 150 507 1 330 8.82e-141 420
Msa0652650 AT5G62000.2 43.363 452 228 5 3 440 21 458 3.90e-122 385
Msa0652650 AT5G62000.5 43.363 452 228 5 3 440 21 458 3.90e-122 385
Msa0652650 AT5G62000.3 43.363 452 228 5 3 440 21 458 3.90e-122 385
Msa0652650 AT5G62000.1 43.363 452 228 5 3 440 21 458 3.90e-122 385
Msa0652650 AT5G62000.4 43.363 452 228 5 3 440 21 458 5.49e-122 384
Msa0652650 AT1G59750.1 47.520 383 167 6 20 389 2 363 1.07e-112 355
Msa0652650 AT1G59750.3 47.520 383 167 6 20 389 2 363 1.07e-112 355
Msa0652650 AT1G59750.2 47.520 383 167 6 20 389 2 363 1.14e-112 355
Msa0652650 AT1G59750.4 47.520 383 167 6 20 389 2 363 1.27e-112 354
Msa0652650 AT2G46530.3 46.791 374 161 9 31 387 27 379 3.84e-106 336
Msa0652650 AT4G23980.1 46.875 352 165 5 37 380 6 343 4.87e-106 337
Msa0652650 AT2G46530.1 47.354 359 154 8 43 387 21 358 5.01e-106 335
Msa0652650 AT4G23980.2 46.875 352 165 5 37 380 6 343 5.14e-106 336
Msa0652650 AT1G19220.1 49.176 364 165 5 25 380 5 356 7.32e-106 347
Msa0652650 AT3G61830.1 45.026 382 178 7 43 410 25 388 5.97e-105 333
Msa0652650 AT5G37020.2 45.802 393 174 8 22 397 4 374 9.18e-105 337
Msa0652650 AT1G30330.3 48.276 377 164 6 43 404 25 385 2.58e-104 340
Msa0652650 AT1G30330.2 48.276 377 164 6 43 404 25 385 2.58e-104 340
Msa0652650 AT5G37020.1 47.059 374 164 7 41 397 18 374 3.36e-104 337
Msa0652650 AT1G30330.1 48.276 377 164 6 43 404 23 383 3.61e-104 339
Msa0652650 AT1G19850.2 49.008 353 146 8 43 379 43 377 4.65e-102 333
Msa0652650 AT1G19850.1 49.008 353 146 8 43 379 54 388 6.28e-102 333
Msa0652650 AT5G20730.2 48.305 354 163 5 35 380 16 357 1.16e-100 334
Msa0652650 AT5G20730.3 48.169 355 163 6 35 380 16 358 4.39e-99 330
Msa0652650 AT5G20730.1 48.169 355 163 6 35 380 16 358 4.64e-99 330
Msa0652650 AT3G61830.2 46.386 332 159 5 83 410 21 337 8.97e-93 299
Msa0652650 AT1G35540.1 42.234 367 169 8 29 379 13 352 2.74e-90 294
Msa0652650 AT1G35240.1 42.936 361 175 8 29 379 13 352 9.61e-90 292
Msa0652650 AT1G34170.1 41.192 369 187 7 43 402 25 372 4.45e-89 288
Msa0652650 AT1G34410.1 35.385 520 273 16 29 526 13 491 1.51e-88 290
Msa0652650 AT1G34390.1 42.659 361 174 9 29 379 13 350 1.82e-88 289
Msa0652650 AT1G34310.1 41.828 361 179 8 29 379 13 352 5.15e-86 283
Msa0652650 AT1G35520.1 42.373 354 173 8 36 379 20 352 1.47e-85 281
Msa0652650 AT2G46530.2 54.202 238 105 3 151 387 37 271 9.16e-83 271
Msa0652650 AT5G37020.3 53.414 249 114 2 151 397 31 279 1.92e-81 273
Msa0652650 AT2G28350.1 38.200 411 200 10 43 410 10 409 7.65e-81 271
Msa0652650 AT2G28350.2 38.200 411 200 10 43 410 10 409 8.96e-81 270
Msa0652650 AT4G30080.1 40.054 372 181 7 43 379 19 383 3.94e-78 263
Msa0652650 AT1G34170.2 38.211 369 172 7 43 402 25 346 8.93e-77 254
Msa0652650 AT1G34170.3 38.211 369 172 7 43 402 25 346 5.84e-76 254
Msa0652650 AT1G77850.2 33.251 403 213 8 44 412 20 400 2.25e-62 219
Msa0652650 AT1G77850.1 33.251 403 213 8 44 412 20 400 2.29e-62 219
Msa0652650 AT1G43950.1 43.421 228 105 6 29 250 13 222 7.85e-52 179
Msa0652650 AT2G46870.1 33.835 133 82 2 136 263 20 151 1.03e-13 73.2
Msa0652650 AT1G01030.2 40.217 92 54 1 149 240 54 144 4.53e-13 71.6
Msa0652650 AT1G01030.1 40.217 92 54 1 149 240 54 144 6.21e-13 71.2
Msa0652650 AT4G01500.1 39.130 92 53 1 149 240 34 122 7.89e-13 70.9
Msa0652650 AT3G25730.1 26.132 287 166 10 2 249 4 283 6.77e-12 67.8
Msa0652650 AT1G68840.2 34.127 126 78 3 128 249 163 287 7.51e-11 64.7
Msa0652650 AT1G68840.1 34.127 126 78 3 128 249 163 287 7.51e-11 64.7

Find 209 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTTGTATGCACTGTTTA+TGG 0.086360 4_3:+60364583 Msa0652650:three_prime_UTR
AAGCATTAACTATGTCTTTA+AGG 0.125975 4_3:-60361452 None:intergenic
CCTCTCACTGAATGGGCTTT+TGG 0.148653 4_3:-60359268 None:intergenic
CTTGACCTTGCAAGACCTTC+TGG 0.208058 4_3:-60363291 None:intergenic
ACAAGTCTCACCTCACTTTC+AGG 0.212334 4_3:-60360296 None:intergenic
CTTGACCTTGCAAGACCTTC+TGG 0.215232 4_3:-60363498 None:intergenic
TTCATCAAAGCTAGAGTTTC+CGG 0.216516 4_3:+60363126 Msa0652650:CDS
GGTGCTGTTGGTTCTGGTTC+TGG 0.228992 4_3:+60359675 Msa0652650:CDS
AAAGAAACAAAAGGAAAATT+TGG 0.230989 4_3:+60359321 Msa0652650:five_prime_UTR
ACAACAACACTTCCTTTCTT+TGG 0.242841 4_3:-60359753 None:intergenic
TTCTGGTTCTTCTGTTTGTT+TGG 0.296671 4_3:+60359692 Msa0652650:CDS
ATTCCTCTAACAGGTAGAAT+TGG 0.305603 4_3:+60363238 Msa0652650:intron
CTGCCTCAACGCCAACTAAT+AGG 0.307928 4_3:+60363791 Msa0652650:CDS
AGTGTTGGTGCTGTTGGTTC+TGG 0.317923 4_3:+60359669 Msa0652650:CDS
ACATTTAACTTAAGGCAAAT+TGG 0.319681 4_3:+60364533 Msa0652650:three_prime_UTR
GACCATCCATTTGTGGATCT+TGG 0.321293 4_3:-60363616 None:intergenic
CTTCTGTTTGTTTGGAGCTA+TGG 0.324256 4_3:+60359700 Msa0652650:CDS
TGAGCTGGCCCGCGGAAAAT+AGG 0.324659 4_3:-60363814 None:intergenic
AGATTCACAGGACTAATTAT+TGG 0.332947 4_3:+60361829 Msa0652650:intron
GAATTGGGACATCAGACTTT+GGG 0.338470 4_3:+60363254 Msa0652650:CDS
GATGTTTCCTGCAATGGCTT+TGG 0.342344 4_3:+60363460 Msa0652650:CDS
GGCTACCAAGATTCAATTGC+TGG 0.343727 4_3:-60361431 None:intergenic
AATCCATGGTTGACGCTTGC+TGG 0.351834 4_3:-60363687 None:intergenic
ACTCAGTTGGAATGAGGTTC+AGG 0.363746 4_3:+60361695 Msa0652650:CDS
AACAAGAAGAAACTTGTATC+TGG 0.365188 4_3:+60361222 Msa0652650:CDS
TTTGATCCAGGCCATCTAAC+AGG 0.365768 4_3:-60361868 None:intergenic
TTAAGTTAAATGTCTAAATT+CGG 0.369293 4_3:-60364523 None:intergenic
ACCTCTGTAATTCAGATAAC+TGG 0.374442 4_3:-60363366 None:intergenic
TGGTACACATTCACGCGATT+TGG 0.374841 4_3:+60363855 Msa0652650:CDS
CAAGGCTCTTTAAGAATTTG+TGG 0.377814 4_3:-60361663 None:intergenic
CAAGATTCTCTTCACTATGA+TGG 0.382293 4_3:+60359572 Msa0652650:exon
TTAGATGGCCTGGATCAAAA+TGG 0.391526 4_3:+60361872 Msa0652650:CDS
TGGAAGCTTCAAGGCTCAAC+AGG 0.392327 4_3:+60363011 Msa0652650:CDS
AGAAGATGGCGAATTGAGAT+TGG 0.400560 4_3:+60361353 Msa0652650:CDS
GAAGATGAAACACCTTCTTC+TGG 0.400643 4_3:+60359621 Msa0652650:CDS
AAAAGTAGCTGCAGAGTGTT+TGG 0.401467 4_3:+60363919 Msa0652650:CDS
ACAGAAAAGGCTTGTCCATA+TGG 0.405325 4_3:-60363538 None:intergenic
GAATTTAGACATTTAACTTA+AGG 0.405601 4_3:+60364525 Msa0652650:three_prime_UTR
GTCAACGAGGCTTGTAGAAA+TGG 0.411503 4_3:+60363559 Msa0652650:CDS
GCTTGTAGAAATGGTCGCTT+TGG 0.413112 4_3:+60363568 Msa0652650:CDS
CGAAGATTGCTTTCCTCCCC+TGG 0.414436 4_3:+60360821 Msa0652650:CDS
ATTCTTTCTTGTAATAACTT+AGG 0.416838 4_3:+60364462 Msa0652650:three_prime_UTR
AGGGAGGTCCAGGATTTATC+TGG 0.416845 4_3:-60364005 None:intergenic
TTCTTTGGCAAAGAGATCAT+AGG 0.418004 4_3:-60359738 None:intergenic
TTCCACCACCAATAGCTTGA+TGG 0.422972 4_3:+60363069 Msa0652650:CDS
TTCTGCATCTTTATTTGCAA+TGG 0.425772 4_3:-60363965 None:intergenic
TTTGGCCAGCAATTGAATCT+TGG 0.426004 4_3:+60361426 Msa0652650:CDS
TAGTGATTTCATAATAATGA+TGG 0.428563 4_3:-60359502 None:intergenic
ACTAGTTGCCATCAAGCTAT+TGG 0.429653 4_3:-60363077 None:intergenic
GTTTCCTGTTGAAGCGATCC+CGG 0.430395 4_3:-60363410 None:intergenic
GAGCTATGGCATGCTTGTGC+TGG 0.433793 4_3:+60359714 Msa0652650:CDS
TCTGCATCTTTATTTGCAAT+GGG 0.433846 4_3:-60363964 None:intergenic
GTGGATCCTGTTAGATGGCC+TGG 0.434675 4_3:+60361862 Msa0652650:CDS
CTTGTGAAGGAGGGAGGTCC+AGG 0.435662 4_3:-60364015 None:intergenic
CATAGAACGAACCTCTTTGA+AGG 0.445028 4_3:-60363744 None:intergenic
TTGAGGGAAGGGGTAATTGA+TGG 0.447627 4_3:+60360669 Msa0652650:CDS
CTTGCAAGACCTTCTGGAAT+CGG 0.448674 4_3:-60363492 None:intergenic
GCAGAGAGCGTGAAGAACTT+TGG 0.455795 4_3:-60359446 None:intergenic
AATTCTGATGTTTCCTGCAA+TGG 0.460396 4_3:+60363454 Msa0652650:CDS
AGATTCACCAAAGCCATTGC+AGG 0.460830 4_3:-60363467 None:intergenic
CAGAGAAGACCATCCATTTG+TGG 0.461406 4_3:-60363623 None:intergenic
GGTGTATTGTCAGGTGTTGT+TGG 0.462932 4_3:+60360271 Msa0652650:CDS
ACGGCCAGGAATGGAAGTTT+CGG 0.465467 4_3:+60361041 Msa0652650:CDS
AGAATTGGGACATCAGACTT+TGG 0.468381 4_3:+60363253 Msa0652650:CDS
GTCGTAAGCAAATGCCTTCG+TGG 0.468733 4_3:-60361180 None:intergenic
CTTGATTATTCTTACTCAGT+TGG 0.470525 4_3:+60361682 Msa0652650:CDS
AAACATCAGAATTCATTTGT+GGG 0.471506 4_3:-60363444 None:intergenic
CATGAAGACATGAACTCGTT+TGG 0.472406 4_3:+60363835 Msa0652650:CDS
TATGCCGAAACTTCCATTCC+TGG 0.474904 4_3:-60361045 None:intergenic
TATCCCGGGATCGCTTCAAC+AGG 0.477815 4_3:+60363406 Msa0652650:CDS
TCATCTTCAAGTACAAGTAT+AGG 0.478694 4_3:+60359645 Msa0652650:CDS
ATGATCTCTTTGCCAAAGAA+AGG 0.480251 4_3:+60359741 Msa0652650:CDS
TTCCTCTAACAGGTAGAATT+GGG 0.480587 4_3:+60363239 Msa0652650:intron
CTGATGTGGATCCTGTTAGA+TGG 0.481986 4_3:+60361857 Msa0652650:CDS
TTTCCTGTTGAAGCGATCCC+GGG 0.482214 4_3:-60363409 None:intergenic
AAGATTCTCTTCACTATGAT+GGG 0.485635 4_3:+60359573 Msa0652650:exon
AGTTTGAAGAGGACCAAGAC+TGG 0.486097 4_3:+60363097 Msa0652650:CDS
ACAAGCCTCGTTGACAGAAA+AGG 0.486107 4_3:-60363551 None:intergenic
AATTGAGACATACTGGGAAC+CGG 0.486594 4_3:-60363145 None:intergenic
GAAACATCAGAATTCATTTG+TGG 0.487206 4_3:-60363445 None:intergenic
AAAATGCTGCTAATGAAAGC+TGG 0.489196 4_3:+60359232 Msa0652650:five_prime_UTR
TTACTTCCCTCAAGGACACT+TGG 0.489214 4_3:+60359776 Msa0652650:CDS
GGCAAAGGACCTGCACGGCC+AGG 0.491321 4_3:+60361027 Msa0652650:CDS
GATATTGAGGTGCATCATAT+AGG 0.493772 4_3:-60364607 None:intergenic
ATACTTCCTAGCCAACCATA+TGG 0.494849 4_3:+60363523 Msa0652650:CDS
CGAAGGCATTTGCTTACGAC+TGG 0.494928 4_3:+60361183 Msa0652650:CDS
CTCATCATTTCAGGTAAGGT+GGG 0.495255 4_3:+60362982 Msa0652650:intron
GATCCCGGGATAGGTTGAAC+CGG 0.495352 4_3:-60363395 None:intergenic
TTATAATAACAAAATTAATC+CGG 0.498479 4_3:+60363708 Msa0652650:CDS
GTCACTTGCCAGATAAATCC+TGG 0.499622 4_3:+60363997 Msa0652650:CDS
TGTTGAAGCGATCCCGGGAT+AGG 0.500591 4_3:-60363404 None:intergenic
GGGATGACATGGAAGCTTCA+AGG 0.501986 4_3:+60363002 Msa0652650:CDS
TGATGAAGGCAATCCAGTCT+TGG 0.502883 4_3:-60363110 None:intergenic
ACAATTGACAGAGGAGAAGA+TGG 0.503689 4_3:+60361339 Msa0652650:intron
ATTTGCAATGGGAGCACCCT+CGG 0.505296 4_3:-60363953 None:intergenic
ACTTCCATTCCTGGCCGTGC+AGG 0.506870 4_3:-60361036 None:intergenic
TTGCTCCGAAGTGAATGCCT+TGG 0.507472 4_3:-60364060 None:intergenic
CCATGGGAGATTGAGCCCTC+AGG 0.508458 4_3:+60363040 Msa0652650:CDS
GAGAAAGAGAAAGAGAAAGA+AGG 0.509354 4_3:+60359380 Msa0652650:five_prime_UTR
CAACTGAGTAAGAATAATCA+AGG 0.509968 4_3:-60361681 None:intergenic
CCAAAAGCCCATTCAGTGAG+AGG 0.511282 4_3:+60359268 Msa0652650:five_prime_UTR
TGAAGGACGTTATCCTCCAC+CGG 0.511378 4_3:-60363727 None:intergenic
ATAGGTAGTGTTGGTGCTGT+TGG 0.511774 4_3:+60359663 Msa0652650:CDS
GAAGATGGCGAATTGAGATT+GGG 0.515498 4_3:+60361354 Msa0652650:CDS
ATTCTTACTCAGTTGGAATG+AGG 0.516705 4_3:+60361689 Msa0652650:CDS
TGCCATCAAGCTATTGGTGG+TGG 0.517515 4_3:-60363071 None:intergenic
GAACGATGAGGTGTATTGTC+AGG 0.518104 4_3:+60360262 Msa0652650:CDS
AGTGAAAGCAGTGAGTGAGT+GGG 0.520072 4_3:+60359349 Msa0652650:five_prime_UTR
TTCACAAGAGCTTGTGGCAA+AGG 0.520697 4_3:+60361012 Msa0652650:CDS
TATGCTTCTGAAATGAAAGA+TGG 0.522167 4_3:+60363763 Msa0652650:CDS
AGGACCTGCACGGCCAGGAA+TGG 0.523330 4_3:+60361032 Msa0652650:CDS
GAGTGAAAGCAGTGAGTGAG+TGG 0.524756 4_3:+60359348 Msa0652650:five_prime_UTR
CAGGGGAGGAAAGCAATCTT+CGG 0.526886 4_3:-60360820 None:intergenic
GCAAGTGCAACAAAAGTTGA+GGG 0.527829 4_3:+60360653 Msa0652650:intron
TCTCATCATTTCAGGTAAGG+TGG 0.529211 4_3:+60362981 Msa0652650:intron
CATTTGTGGATCTTGGCACC+TGG 0.529771 4_3:-60363609 None:intergenic
ATAACTTAGGATCAATACTT+AGG 0.533361 4_3:+60364475 Msa0652650:three_prime_UTR
TGCTGGTACATCAACACTGA+TGG 0.534225 4_3:-60363670 None:intergenic
TATCCCGGTTCAACCTATCC+CGG 0.534428 4_3:+60363391 Msa0652650:CDS
GCTTGTCCATATGGTTGGCT+AGG 0.536411 4_3:-60363529 None:intergenic
GGCATTTGCTTACGACTGGA+TGG 0.537671 4_3:+60361187 Msa0652650:CDS
ATGCATGCTAAGACTGATGC+TGG 0.538290 4_3:+60364393 Msa0652650:three_prime_UTR
GAGATGCTGTTCTGTTCCTC+CGG 0.539610 4_3:+60361244 Msa0652650:CDS
AATTGAGATTGGGAATCCGC+AGG 0.541630 4_3:+60361364 Msa0652650:CDS
GAGTTCATGTCTTCATGAGC+TGG 0.542082 4_3:-60363829 None:intergenic
GATGTTCCAAGTGTCCTTGA+GGG 0.542111 4_3:-60359782 None:intergenic
CGATTCCAGAAGGTCTTGCA+AGG 0.542383 4_3:+60363493 Msa0652650:CDS
AGCAAGTGCAACAAAAGTTG+AGG 0.542657 4_3:+60360652 Msa0652650:intron
TTCAACATGTCTTGTGAAGG+AGG 0.544875 4_3:-60364025 None:intergenic
AGCGTGAAGAACTTTGGCAT+TGG 0.545139 4_3:-60359440 None:intergenic
GCTCAACAGGGTTTCACCAT+GGG 0.545772 4_3:+60363024 Msa0652650:CDS
GAATTACAGAGGTGCTATCC+CGG 0.550009 4_3:+60363376 Msa0652650:CDS
GCTTCTGATACTAGCACTCA+TGG 0.551937 4_3:+60360771 Msa0652650:CDS
AAAAGGCTTGTCCATATGGT+TGG 0.552881 4_3:-60363534 None:intergenic
CGGAAAATAGGCCTATTAGT+TGG 0.553897 4_3:-60363802 None:intergenic
ACAGAGAAGCGGTCAAGAGT+TGG 0.561254 4_3:+60363885 Msa0652650:CDS
CTCTTTAAGAATTTGTGGAT+AGG 0.561415 4_3:-60361658 None:intergenic
TGCAACAAAAGTTGAGGGAA+GGG 0.561765 4_3:+60360658 Msa0652650:CDS
TAAACGCAGGGCAGCCACGA+AGG 0.562505 4_3:+60361166 Msa0652650:intron
TCAATCCAAGGCATTCACTT+CGG 0.563879 4_3:+60364055 Msa0652650:CDS
CTTGAAGATGAACCAGAAGA+AGG 0.564461 4_3:-60359633 None:intergenic
ATCTGGCAAGTGACTGCAGA+GGG 0.565131 4_3:-60363988 None:intergenic
ATCCCGGTTCAACCTATCCC+GGG 0.568291 4_3:+60363392 Msa0652650:CDS
TTGAAGATGATTTCAATCCA+AGG 0.568841 4_3:+60364043 Msa0652650:CDS
TTTGCCACAAGCTCTTGTGA+AGG 0.570311 4_3:-60361010 None:intergenic
AGTACAAGTATAGGTAGTGT+TGG 0.571181 4_3:+60359654 Msa0652650:CDS
TCAGGTAAGGTGGGATGACA+TGG 0.571901 4_3:+60362991 Msa0652650:intron
CTGAAGATGCTGCAGAGCGA+AGG 0.573424 4_3:+60361731 Msa0652650:CDS
CAGGTGCCAAGATCCACAAA+TGG 0.574271 4_3:+60363610 Msa0652650:CDS
ATCTTCAACATGTCTTGTGA+AGG 0.575530 4_3:-60364028 None:intergenic
GTTGTTGTTTACTTCCCTCA+AGG 0.575589 4_3:+60359768 Msa0652650:CDS
GGAAACTCTAGCTTTGATGA+AGG 0.575774 4_3:-60363124 None:intergenic
TAACAAAATTAATCCGGTGG+AGG 0.578416 4_3:+60363714 Msa0652650:CDS
AAGGCATTCACTTCGGAGCA+AGG 0.579813 4_3:+60364062 Msa0652650:CDS
GTAATTGATGGTGATGGTGA+TGG 0.584113 4_3:+60360681 Msa0652650:CDS
GACTGACATGCATGATATTG+AGG 0.585893 4_3:-60364620 None:intergenic
CCTGAGGGCTCAATCTCCCA+TGG 0.586174 4_3:-60363040 None:intergenic
TGGATTGTAGTGTATGCTAA+AGG 0.587455 4_3:-60361490 None:intergenic
GTGCAACAAAAGTTGAGGGA+AGG 0.588950 4_3:+60360657 Msa0652650:CDS
GCAACAAAAGTTGAGGGAAG+GGG 0.589038 4_3:+60360659 Msa0652650:CDS
GGAATCACTGCGGTTCCAGA+AGG 0.590895 4_3:+60363276 Msa0652650:CDS
GGCTCAACAGGGTTTCACCA+TGG 0.590908 4_3:+60363023 Msa0652650:CDS
GATGGTGATGGTGATGGTGA+AGG 0.594977 4_3:+60360687 Msa0652650:CDS
AGTTGCCATCAAGCTATTGG+TGG 0.596259 4_3:-60363074 None:intergenic
TAATAACAAAATTAATCCGG+TGG 0.596313 4_3:+60363711 Msa0652650:CDS
AATTATTGGAATTACTGATG+TGG 0.597448 4_3:+60361843 Msa0652650:CDS
TGAATCTTTCCGATTCCAGA+AGG 0.600033 4_3:+60363483 Msa0652650:CDS
CAATCTTCGGCTGCTCGACG+AGG 0.600698 4_3:-60360807 None:intergenic
TTAGCATACACTACAATCCA+AGG 0.602455 4_3:+60361493 Msa0652650:CDS
CAAAAGCCCATTCAGTGAGA+GGG 0.603222 4_3:+60359269 Msa0652650:five_prime_UTR
AGATGTTCCAAGTGTCCTTG+AGG 0.604919 4_3:-60359783 None:intergenic
ACACGACAGAACACATGAGA+AGG 0.606315 4_3:-60359840 None:intergenic
GTATTTGTGCAGGCTGAGGA+AGG 0.606600 4_3:+60360239 Msa0652650:intron
TGATGGCAACTAGTTTGAAG+AGG 0.608820 4_3:+60363086 Msa0652650:CDS
TGCCAAGATCCACAAATGGA+TGG 0.610246 4_3:+60363614 Msa0652650:CDS
ATCCCGGGATAGGTTGAACC+GGG 0.611784 4_3:-60363394 None:intergenic
CGGTTCCAGAAGGTCTTGCA+AGG 0.612560 4_3:+60363286 Msa0652650:CDS
AGGCCTATTAGTTGGCGTTG+AGG 0.614103 4_3:-60363794 None:intergenic
AATTGGGACATCAGACTTTG+GGG 0.617990 4_3:+60363255 Msa0652650:CDS
AAGACCTTCACAAGAGCTTG+TGG 0.618685 4_3:+60361006 Msa0652650:CDS
ATTGAGATTGGGAATCCGCA+GGG 0.619618 4_3:+60361365 Msa0652650:CDS
ACATGTCTTGTGAAGGAGGG+AGG 0.622871 4_3:-60364021 None:intergenic
TCAACATGTCTTGTGAAGGA+GGG 0.630253 4_3:-60364024 None:intergenic
TGTCTTCATGAGCTGGCCCG+CGG 0.635316 4_3:-60363822 None:intergenic
TTGTGGATCTTGGCACCTGG+TGG 0.639384 4_3:-60363606 None:intergenic
GGAAGCTTCAAGGCTCAACA+GGG 0.640992 4_3:+60363012 Msa0652650:CDS
CTAAGACTGATGCTGGCTTG+AGG 0.646313 4_3:+60364400 Msa0652650:three_prime_UTR
TTGGTTGCACTACAGAGAAG+CGG 0.648720 4_3:+60363874 Msa0652650:CDS
TCTGTAATTCAGATAACTGG+TGG 0.650832 4_3:-60363363 None:intergenic
AAGTTTCGGCATATATACAG+AGG 0.654829 4_3:+60361055 Msa0652650:CDS
GAAGGGGTAATTGATGGTGA+TGG 0.656136 4_3:+60360675 Msa0652650:CDS
AGAGTCTTGCAGAACATGTG+AGG 0.659565 4_3:-60360744 None:intergenic
GTTGTTGGTTCCTGAAAGTG+AGG 0.660598 4_3:+60360286 Msa0652650:CDS
ATCAAAATGGAAATGCCTAG+TGG 0.661824 4_3:+60361885 Msa0652650:CDS
GTACCAGCAAGCGTCAACCA+TGG 0.662349 4_3:+60363684 Msa0652650:CDS
TGATGGTGATGGTGAAGGAG+AGG 0.663407 4_3:+60360692 Msa0652650:CDS
GATTGATCTCAACACTACTG+AGG 0.665345 4_3:+60359599 Msa0652650:CDS
GAGGATAACGTCCTTCAAAG+AGG 0.666492 4_3:+60363733 Msa0652650:CDS
CTCAAGGTAAGTACCAGGGG+AGG 0.666901 4_3:-60360834 None:intergenic
GGTGGTGGAAGATGAGCCTG+AGG 0.683472 4_3:-60363056 None:intergenic
TATTTGTGCAGGCTGAGGAA+GGG 0.684256 4_3:+60360240 Msa0652650:intron
TATCTGGCAAGTGACTGCAG+AGG 0.699849 4_3:-60363989 None:intergenic
ACCAGTTATCTGAATTACAG+AGG 0.702085 4_3:+60363365 Msa0652650:CDS
CTTGTGGCAAAGGACCTGCA+CGG 0.708055 4_3:+60361022 Msa0652650:CDS
GGCTGAGGAAGGGAACGATG+AGG 0.721717 4_3:+60360250 Msa0652650:intron
CAGACTTTGGGGAATCACTG+CGG 0.730858 4_3:+60363266 Msa0652650:CDS
TCTGATACTAGCACTCATGG+TGG 0.734262 4_3:+60360774 Msa0652650:CDS
GTGGTGGAAGATGAGCCTGA+GGG 0.740646 4_3:-60363055 None:intergenic
GCATTCACTTCGGAGCAAGG+CGG 0.745305 4_3:+60364065 Msa0652650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTCAATTTATTTATTTTTT+TGG + chr4_3:60363160-60363179 Msa0652650:intron 10.0%
!! TTATAATAACAAAATTAATC+CGG + chr4_3:60363708-60363727 Msa0652650:CDS 10.0%
!!! AATTAGTTACAATAAATTTT+TGG - chr4_3:60364502-60364521 None:intergenic 10.0%
!! TTTATTGAAAATAGAATATC+AGG - chr4_3:60362104-60362123 None:intergenic 15.0%
!! TCTACTAATTAATCTATAAA+AGG + chr4_3:60362823-60362842 Msa0652650:intron 15.0%
!!! AATTTTGTTATTATAATCCA+TGG - chr4_3:60363704-60363723 None:intergenic 15.0%
!!! TTGACTAATTCTTTTTATTT+GGG + chr4_3:60364307-60364326 Msa0652650:intron 15.0%
!! TTAAGTTAAATGTCTAAATT+CGG - chr4_3:60364526-60364545 None:intergenic 15.0%
!!! TTTCCTTTTGTTTCTTTTTT+GGG - chr4_3:60359318-60359337 None:intergenic 20.0%
!!! TTTTCCTTTTGTTTCTTTTT+TGG - chr4_3:60359319-60359338 None:intergenic 20.0%
!! AAAGAAACAAAAGGAAAATT+TGG + chr4_3:60359321-60359340 Msa0652650:five_prime_UTR 20.0%
!! TAGTGATTTCATAATAATGA+TGG - chr4_3:60359505-60359524 None:intergenic 20.0%
!! ATATTATCCGAAAAAGATAA+CGG - chr4_3:60359819-60359838 None:intergenic 20.0%
!!! ACTTTTTTCCTTCTAAAATT+TGG + chr4_3:60359984-60360003 Msa0652650:intron 20.0%
!!! AAAAGAAACCAAATTTTAGA+AGG - chr4_3:60359995-60360014 None:intergenic 20.0%
!!! TCTAAAATTTGGTTTCTTTT+TGG + chr4_3:60359995-60360014 Msa0652650:intron 20.0%
!!! CTAAAATTTGGTTTCTTTTT+GGG + chr4_3:60359996-60360015 Msa0652650:intron 20.0%
!! TTCATTATAATCATCTCAAA+TGG - chr4_3:60360445-60360464 None:intergenic 20.0%
!! AAACTTTCAAAATTGAACAA+GGG - chr4_3:60360882-60360901 None:intergenic 20.0%
!! AAAACTTTCAAAATTGAACA+AGG - chr4_3:60360883-60360902 None:intergenic 20.0%
!!! ACTTGTTTCTCATTTTTATA+AGG + chr4_3:60361084-60361103 Msa0652650:intron 20.0%
!!! TAAATGTTTTGATAGAATGT+AGG - chr4_3:60361278-60361297 None:intergenic 20.0%
!! GATTAAGATTCTCTTAAATA+AGG - chr4_3:60361791-60361810 None:intergenic 20.0%
!! ATCATTTATATGCTTGAAAT+TGG + chr4_3:60361947-60361966 Msa0652650:intron 20.0%
!! TCATTTATATGCTTGAAATT+GGG + chr4_3:60361948-60361967 Msa0652650:intron 20.0%
!!! ATTTTTTTTTGTCAATGTTG+TGG + chr4_3:60362039-60362058 Msa0652650:intron 20.0%
!!! TTTCAATAAAATTTTGCAGA+CGG + chr4_3:60362114-60362133 Msa0652650:intron 20.0%
!! AAATAATTCCATTATTGAAC+TGG + chr4_3:60362316-60362335 Msa0652650:intron 20.0%
!!! AAACTTACCTTATTTACTAT+TGG - chr4_3:60362554-60362573 None:intergenic 20.0%
!! ACTTAACATAGGAAAAAATT+TGG + chr4_3:60362670-60362689 Msa0652650:intron 20.0%
!! AAACAATATGAAGTGAAATA+TGG - chr4_3:60362711-60362730 None:intergenic 20.0%
!! TAAATAAATTGAGACATACT+GGG - chr4_3:60363154-60363173 None:intergenic 20.0%
!! ATAAATAAATTGAGACATAC+TGG - chr4_3:60363155-60363174 None:intergenic 20.0%
!!! GTTGACTAATTCTTTTTATT+TGG + chr4_3:60364306-60364325 Msa0652650:intron 20.0%
!!! TGACTAATTCTTTTTATTTG+GGG + chr4_3:60364308-60364327 Msa0652650:intron 20.0%
!! ATTCTTTCTTGTAATAACTT+AGG + chr4_3:60364462-60364481 Msa0652650:three_prime_UTR 20.0%
!!! GAATTTAGACATTTAACTTA+AGG + chr4_3:60364525-60364544 Msa0652650:three_prime_UTR 20.0%
!! TGATTTTCCGTTATCTTTTT+CGG + chr4_3:60359809-60359828 Msa0652650:CDS 25.0%
!! AATCGAATGTTGTCTTTTAT+TGG + chr4_3:60359917-60359936 Msa0652650:intron 25.0%
!!! TTTTTGAGTGAAACTTGTTA+TGG + chr4_3:60360175-60360194 Msa0652650:intron 25.0%
!!! AACTGATTTTTGAATGAACT+TGG + chr4_3:60360618-60360637 Msa0652650:intron 25.0%
! TAGAATACCAATTGATTGTT+GGG + chr4_3:60361123-60361142 Msa0652650:intron 25.0%
! AACATTTACATAGAGTAACA+AGG + chr4_3:60361290-60361309 Msa0652650:intron 25.0%
!! AGTAACTTTTCATCTATCTT+TGG + chr4_3:60361408-60361427 Msa0652650:CDS 25.0%
! AAGCATTAACTATGTCTTTA+AGG - chr4_3:60361455-60361474 None:intergenic 25.0%
!!! TACAATCCAAGGTATTTTTA+TGG + chr4_3:60361504-60361523 Msa0652650:intron 25.0%
!!! TTTTTTAGTAGTTCGTGAAA+GGG + chr4_3:60361542-60361561 Msa0652650:intron 25.0%
!!! TGCTTTTACTATTTCTTTGT+AGG + chr4_3:60361611-60361630 Msa0652650:intron 25.0%
!! TTACTATTTCTTTGTAGGAT+TGG + chr4_3:60361616-60361635 Msa0652650:intron 25.0%
! AATTATTGGAATTACTGATG+TGG + chr4_3:60361843-60361862 Msa0652650:CDS 25.0%
! CTTATATATGATAAATCCAC+AGG - chr4_3:60362014-60362033 None:intergenic 25.0%
! CACTAATATGTATAGTTAGA+TGG - chr4_3:60362220-60362239 None:intergenic 25.0%
! CATCTAACTATACATATTAG+TGG + chr4_3:60362218-60362237 Msa0652650:intron 25.0%
! GAAAATTGTAGAAACTTACA+TGG + chr4_3:60362352-60362371 Msa0652650:intron 25.0%
!!! AAGTGACACTTATTTTGAAA+CGG - chr4_3:60362412-60362431 None:intergenic 25.0%
!! AATTAATTAGAGGGTACAAT+TGG - chr4_3:60362503-60362522 None:intergenic 25.0%
! TGTACACTCAATTAATTAGA+GGG - chr4_3:60362512-60362531 None:intergenic 25.0%
!! TTACTATTGGTGTAATGTTT+TGG - chr4_3:60362541-60362560 None:intergenic 25.0%
! CATTACACCAATAGTAAATA+AGG + chr4_3:60362544-60362563 Msa0652650:intron 25.0%
! CAGATTGATAAATGTAATGA+TGG - chr4_3:60362602-60362621 None:intergenic 25.0%
! TATGAAGTGAAATATGGTAT+TGG - chr4_3:60362705-60362724 None:intergenic 25.0%
! AAACATCAGAATTCATTTGT+GGG - chr4_3:60363447-60363466 None:intergenic 25.0%
! TAATAACAAAATTAATCCGG+TGG + chr4_3:60363711-60363730 Msa0652650:CDS 25.0%
!!! TTTTTGATGTGTTCTAAACT+AGG + chr4_3:60364235-60364254 Msa0652650:intron 25.0%
!!! TTTTGATGTGTTCTAAACTA+GGG + chr4_3:60364236-60364255 Msa0652650:intron 25.0%
!!! ACTAGGGAATTTTTTTGAAA+TGG + chr4_3:60364252-60364271 Msa0652650:intron 25.0%
!!! GACTAATTCTTTTTATTTGG+GGG + chr4_3:60364309-60364328 Msa0652650:intron 25.0%
!!! ACTAATTCTTTTTATTTGGG+GGG + chr4_3:60364310-60364329 Msa0652650:intron 25.0%
! ATAACTTAGGATCAATACTT+AGG + chr4_3:60364475-60364494 Msa0652650:three_prime_UTR 25.0%
!! ACATTTAACTTAAGGCAAAT+TGG + chr4_3:60364533-60364552 Msa0652650:three_prime_UTR 25.0%
AGAGGGAAAAAGAAAGTAAA+AGG + chr4_3:60359286-60359305 Msa0652650:five_prime_UTR 30.0%
GAACCCAAAAAAGAAACAAA+AGG + chr4_3:60359312-60359331 Msa0652650:five_prime_UTR 30.0%
! AAAGAAGGTCTCTTTCTTTT+TGG + chr4_3:60359395-60359414 Msa0652650:five_prime_UTR 30.0%
!! TCTCTTTCTTTTTGGTGTAT+TGG + chr4_3:60359403-60359422 Msa0652650:five_prime_UTR 30.0%
!! CTCTTTCTTTTTGGTGTATT+GGG + chr4_3:60359404-60359423 Msa0652650:five_prime_UTR 30.0%
AAGATTCTCTTCACTATGAT+GGG + chr4_3:60359573-60359592 Msa0652650:exon 30.0%
TCATCTTCAAGTACAAGTAT+AGG + chr4_3:60359645-60359664 Msa0652650:CDS 30.0%
! GAATGTTGTCTTTTATTGGT+CGG + chr4_3:60359921-60359940 Msa0652650:intron 30.0%
! AATGTTGTCTTTTATTGGTC+GGG + chr4_3:60359922-60359941 Msa0652650:intron 30.0%
!!! TCTTTTTGGGTTTTTACATG+TGG + chr4_3:60360009-60360028 Msa0652650:intron 30.0%
!!! CTTTTTGGGTTTTTACATGT+GGG + chr4_3:60360010-60360029 Msa0652650:intron 30.0%
ATCTATGTTAGTGTCAAGTT+TGG + chr4_3:60360069-60360088 Msa0652650:intron 30.0%
!!! TTTTTGGTTCAGTTCTGTTT+TGG + chr4_3:60360337-60360356 Msa0652650:intron 30.0%
GTTAAGTGTCATATTACCAA+AGG + chr4_3:60360483-60360502 Msa0652650:intron 30.0%
ATTTAATCCACTTCCTCTTT+AGG + chr4_3:60360970-60360989 Msa0652650:intron 30.0%
TATAAGGACAAGAACATTTC+AGG + chr4_3:60361100-60361119 Msa0652650:intron 30.0%
GTAGAATACCAATTGATTGT+TGG + chr4_3:60361122-60361141 Msa0652650:intron 30.0%
ATACAAACCCAACAATCAAT+TGG - chr4_3:60361133-60361152 None:intergenic 30.0%
! GATTGTTGGGTTTGTATTTT+CGG + chr4_3:60361136-60361155 Msa0652650:intron 30.0%
AACAAGAAGAAACTTGTATC+TGG + chr4_3:60361222-60361241 Msa0652650:CDS 30.0%
TGTCGCGAAATATAAAATGT+CGG - chr4_3:60361322-60361341 None:intergenic 30.0%
GAATAGCCATAAAAATACCT+TGG - chr4_3:60361513-60361532 None:intergenic 30.0%
!!! GTTTTTTAGTAGTTCGTGAA+AGG + chr4_3:60361541-60361560 Msa0652650:intron 30.0%
! CTCTTTAAGAATTTGTGGAT+AGG - chr4_3:60361661-60361680 None:intergenic 30.0%
CAACTGAGTAAGAATAATCA+AGG - chr4_3:60361684-60361703 None:intergenic 30.0%
CTTGATTATTCTTACTCAGT+TGG + chr4_3:60361682-60361701 Msa0652650:CDS 30.0%
CTGTGAATCTGCATAATAAA+AGG - chr4_3:60361819-60361838 None:intergenic 30.0%
! CTTTTATTATGCAGATTCAC+AGG + chr4_3:60361817-60361836 Msa0652650:intron 30.0%
AGATTCACAGGACTAATTAT+TGG + chr4_3:60361829-60361848 Msa0652650:intron 30.0%
CCTAATAAACGAAGTTAGAA+AGG - chr4_3:60361924-60361943 None:intergenic 30.0%
CCTTTCTAACTTCGTTTATT+AGG + chr4_3:60361921-60361940 Msa0652650:intron 30.0%
CAGGCTATATAATAAAACGA+CGG - chr4_3:60362158-60362177 None:intergenic 30.0%
TTATTATATAGCCTGCACTT+AGG + chr4_3:60362163-60362182 Msa0652650:intron 30.0%
!! TGTATTCCTTTAGAATGAGA+AGG + chr4_3:60362279-60362298 Msa0652650:intron 30.0%
AATAGTCCTTCTCATTCTAA+AGG - chr4_3:60362288-60362307 None:intergenic 30.0%
GTGTACACTCAATTAATTAG+AGG - chr4_3:60362513-60362532 None:intergenic 30.0%
!! TTCAAAATGAGTGTCGTTTA+AGG - chr4_3:60362635-60362654 None:intergenic 30.0%
!!! ACACTCATTTTGAAACAGAA+GGG + chr4_3:60362641-60362660 Msa0652650:intron 30.0%
!! AAGGGAGTATTACTTAACAT+AGG + chr4_3:60362659-60362678 Msa0652650:intron 30.0%
! CTTGAAGTAACTCAAGTTTT+TGG + chr4_3:60362758-60362777 Msa0652650:intron 30.0%
CAAGTAGTAATGAGGTTAAT+AGG - chr4_3:60362910-60362929 None:intergenic 30.0%
ATTGACTGATTGCAATCAAA+TGG + chr4_3:60362954-60362973 Msa0652650:intron 30.0%
! ATTTCTCATCATTTCAGGTA+AGG + chr4_3:60362978-60362997 Msa0652650:intron 30.0%
! TTGCAAGGTCAAGAAATTTT+AGG + chr4_3:60363301-60363320 Msa0652650:CDS 30.0%
GAAACATCAGAATTCATTTG+TGG - chr4_3:60363448-60363467 None:intergenic 30.0%
!! TATGCTTCTGAAATGAAAGA+TGG + chr4_3:60363763-60363782 Msa0652650:CDS 30.0%
!!! TTTGGTTTTTCATTAACCGA+GGG + chr4_3:60363937-60363956 Msa0652650:CDS 30.0%
! TCTGCATCTTTATTTGCAAT+GGG - chr4_3:60363967-60363986 None:intergenic 30.0%
! TTCTGCATCTTTATTTGCAA+TGG - chr4_3:60363968-60363987 None:intergenic 30.0%
TTGAAGATGATTTCAATCCA+AGG + chr4_3:60364043-60364062 Msa0652650:CDS 30.0%
AGGATGAATATTGCTTACTT+TGG - chr4_3:60364106-60364125 None:intergenic 30.0%
! CTAGCGTACTTTTCTTTAAA+TGG + chr4_3:60364155-60364174 Msa0652650:intron 30.0%
TGTAACTTAATATTGTCTGC+AGG + chr4_3:60364340-60364359 Msa0652650:intron 30.0%
GTAACTTAATATTGTCTGCA+GGG + chr4_3:60364341-60364360 Msa0652650:intron 30.0%
AATCTTGTATGCACTGTTTA+TGG + chr4_3:60364583-60364602 Msa0652650:three_prime_UTR 30.0%
AAAATGCTGCTAATGAAAGC+TGG + chr4_3:60359232-60359251 Msa0652650:five_prime_UTR 35.0%
GAGAAAGAGAAAGAGAAAGA+AGG + chr4_3:60359374-60359393 Msa0652650:five_prime_UTR 35.0%
CAAGATTCTCTTCACTATGA+TGG + chr4_3:60359572-60359591 Msa0652650:exon 35.0%
AGTACAAGTATAGGTAGTGT+TGG + chr4_3:60359654-60359673 Msa0652650:CDS 35.0%
!! TTCTGGTTCTTCTGTTTGTT+TGG + chr4_3:60359692-60359711 Msa0652650:CDS 35.0%
TTCTTTGGCAAAGAGATCAT+AGG - chr4_3:60359741-60359760 None:intergenic 35.0%
ATGATCTCTTTGCCAAAGAA+AGG + chr4_3:60359741-60359760 Msa0652650:CDS 35.0%
ACAACAACACTTCCTTTCTT+TGG - chr4_3:60359756-60359775 None:intergenic 35.0%
GATTTGTACGCTGAAAAGAA+GGG - chr4_3:60359901-60359920 None:intergenic 35.0%
TTGCTCAATGAGGAAATTGA+TGG + chr4_3:60360039-60360058 Msa0652650:intron 35.0%
TGCTCAATGAGGAAATTGAT+GGG + chr4_3:60360040-60360059 Msa0652650:intron 35.0%
!! GAGTGAAACTTGTTATGGTT+TGG + chr4_3:60360180-60360199 Msa0652650:intron 35.0%
CATAGAATGTGTATTTGTGC+AGG + chr4_3:60360229-60360248 Msa0652650:intron 35.0%
TTACTCAGTGTCTAAGTCTT+AGG + chr4_3:60360407-60360426 Msa0652650:intron 35.0%
TACTCAGTGTCTAAGTCTTA+GGG + chr4_3:60360408-60360427 Msa0652650:intron 35.0%
CCTATAGCTACTTAGTACTA+TGG - chr4_3:60360518-60360537 None:intergenic 35.0%
CCATAGTACTAAGTAGCTAT+AGG + chr4_3:60360515-60360534 Msa0652650:intron 35.0%
!! GTTGCACTTGCTATAAAAAG+TGG - chr4_3:60360644-60360663 None:intergenic 35.0%
ATTTCAAAGTAGCACACTCA+AGG - chr4_3:60360853-60360872 None:intergenic 35.0%
TGTTGAGAGTAATCCTAAAG+AGG - chr4_3:60360986-60361005 None:intergenic 35.0%
AAGTTTCGGCATATATACAG+AGG + chr4_3:60361055-60361074 Msa0652650:CDS 35.0%
TTTCGGTTTCTAATAAACGC+AGG + chr4_3:60361153-60361172 Msa0652650:intron 35.0%
TTCGGTTTCTAATAAACGCA+GGG + chr4_3:60361154-60361173 Msa0652650:intron 35.0%
TAGAATGTAGGTCATCTTAC+CGG - chr4_3:60361266-60361285 None:intergenic 35.0%
TGGATTGTAGTGTATGCTAA+AGG - chr4_3:60361493-60361512 None:intergenic 35.0%
TTAGCATACACTACAATCCA+AGG + chr4_3:60361493-60361512 Msa0652650:CDS 35.0%
! CAAGGCTCTTTAAGAATTTG+TGG - chr4_3:60361666-60361685 None:intergenic 35.0%
ATTCTTACTCAGTTGGAATG+AGG + chr4_3:60361689-60361708 Msa0652650:CDS 35.0%
ATCAAAATGGAAATGCCTAG+TGG + chr4_3:60361885-60361904 Msa0652650:CDS 35.0%
TATGCTTGAAATTGGGTGTT+AGG + chr4_3:60361955-60361974 Msa0652650:intron 35.0%
TATAGTTAGATGGAAGACAG+AGG - chr4_3:60362210-60362229 None:intergenic 35.0%
CCATAAAGCCAGTTCAATAA+TGG - chr4_3:60362327-60362346 None:intergenic 35.0%
!! CCATTATTGAACTGGCTTTA+TGG + chr4_3:60362324-60362343 Msa0652650:intron 35.0%
!!! GACACTTATTTTGAAACGGA+GGG - chr4_3:60362408-60362427 None:intergenic 35.0%
!!! TGACACTTATTTTGAAACGG+AGG - chr4_3:60362409-60362428 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+AGG + chr4_3:60362640-60362659 Msa0652650:intron 35.0%
CGTAAAGTATAGACAATGTC+AGG - chr4_3:60362736-60362755 None:intergenic 35.0%
!! TTGATTGCATTTGCTGTTCA+TGG + chr4_3:60362869-60362888 Msa0652650:intron 35.0%
ACCTCATTACTACTTGTTTG+TGG + chr4_3:60362914-60362933 Msa0652650:intron 35.0%
ACCACAAACAAGTAGTAATG+AGG - chr4_3:60362918-60362937 None:intergenic 35.0%
ATGGCATTTCTCATCATTTC+AGG + chr4_3:60362973-60362992 Msa0652650:intron 35.0%
TTCATCAAAGCTAGAGTTTC+CGG + chr4_3:60363126-60363145 Msa0652650:CDS 35.0%
AATTCTACCTGTTAGAGGAA+TGG - chr4_3:60363239-60363258 None:intergenic 35.0%
ATTCCTCTAACAGGTAGAAT+TGG + chr4_3:60363238-60363257 Msa0652650:intron 35.0%
TTCCTCTAACAGGTAGAATT+GGG + chr4_3:60363239-60363258 Msa0652650:intron 35.0%
TCTGTAATTCAGATAACTGG+TGG - chr4_3:60363366-60363385 None:intergenic 35.0%
ACCAGTTATCTGAATTACAG+AGG + chr4_3:60363365-60363384 Msa0652650:CDS 35.0%
ACCTCTGTAATTCAGATAAC+TGG - chr4_3:60363369-60363388 None:intergenic 35.0%
AATTCTGATGTTTCCTGCAA+TGG + chr4_3:60363454-60363473 Msa0652650:CDS 35.0%
TAACAAAATTAATCCGGTGG+AGG + chr4_3:60363714-60363733 Msa0652650:CDS 35.0%
!!! GTTTGGTTTTTCATTAACCG+AGG + chr4_3:60363936-60363955 Msa0652650:CDS 35.0%
ATCTTCAACATGTCTTGTGA+AGG - chr4_3:60364031-60364050 None:intergenic 35.0%
AATGGCTGTGATATGTGTAA+TGG + chr4_3:60364270-60364289 Msa0652650:intron 35.0%
GATATTGAGGTGCATCATAT+AGG - chr4_3:60364610-60364629 None:intergenic 35.0%
! CTTTTTCCCTCTCACTGAAT+GGG - chr4_3:60359278-60359297 None:intergenic 40.0%
! TCTTTTTCCCTCTCACTGAA+TGG - chr4_3:60359279-60359298 None:intergenic 40.0%
!! TCTTTTTGGTGTATTGGGTC+AGG + chr4_3:60359409-60359428 Msa0652650:five_prime_UTR 40.0%
GATTGATCTCAACACTACTG+AGG + chr4_3:60359599-60359618 Msa0652650:CDS 40.0%
GAAGATGAAACACCTTCTTC+TGG + chr4_3:60359621-60359640 Msa0652650:CDS 40.0%
CTTGAAGATGAACCAGAAGA+AGG - chr4_3:60359636-60359655 None:intergenic 40.0%
! CTTCTGTTTGTTTGGAGCTA+TGG + chr4_3:60359700-60359719 Msa0652650:CDS 40.0%
!! GTTGTTGTTTACTTCCCTCA+AGG + chr4_3:60359768-60359787 Msa0652650:CDS 40.0%
CGATTTGTACGCTGAAAAGA+AGG - chr4_3:60359902-60359921 None:intergenic 40.0%
!!! TGGGTTTTGTTTGCTCAATG+AGG + chr4_3:60360029-60360048 Msa0652650:intron 40.0%
GTTAGTGTCAAGTTTGGCAT+AGG + chr4_3:60360075-60360094 Msa0652650:intron 40.0%
!! TTTGGAGAGAGTGCTGAAAA+TGG + chr4_3:60360355-60360374 Msa0652650:intron 40.0%
ACTCAGTGTCTAAGTCTTAG+GGG + chr4_3:60360409-60360428 Msa0652650:intron 40.0%
ACTATGGTCTATGACTCCTT+TGG - chr4_3:60360502-60360521 None:intergenic 40.0%
GTAGCACTCTAGTGTTCAAA+AGG - chr4_3:60360571-60360590 None:intergenic 40.0%
AGCAAGTGCAACAAAAGTTG+AGG + chr4_3:60360652-60360671 Msa0652650:intron 40.0%
GCAAGTGCAACAAAAGTTGA+GGG + chr4_3:60360653-60360672 Msa0652650:intron 40.0%
TGCAACAAAAGTTGAGGGAA+GGG + chr4_3:60360658-60360677 Msa0652650:CDS 40.0%
!! GTAATTGATGGTGATGGTGA+TGG + chr4_3:60360681-60360700 Msa0652650:CDS 40.0%
GAGTAATCCTAAAGAGGAAG+TGG - chr4_3:60360980-60360999 None:intergenic 40.0%
TATTTCGCGACAATTGACAG+AGG + chr4_3:60361330-60361349 Msa0652650:intron 40.0%
ACAATTGACAGAGGAGAAGA+TGG + chr4_3:60361339-60361358 Msa0652650:intron 40.0%
AGAAGATGGCGAATTGAGAT+TGG + chr4_3:60361353-60361372 Msa0652650:CDS 40.0%
GAAGATGGCGAATTGAGATT+GGG + chr4_3:60361354-60361373 Msa0652650:CDS 40.0%
!! TTTTTAATTGAGCTGCCCTG+CGG - chr4_3:60361383-60361402 None:intergenic 40.0%
TTTGGCCAGCAATTGAATCT+TGG + chr4_3:60361426-60361445 Msa0652650:CDS 40.0%
TTAGATGGCCTGGATCAAAA+TGG + chr4_3:60361872-60361891 Msa0652650:CDS 40.0%
!! AGGCATTTCCATTTTGATCC+AGG - chr4_3:60361883-60361902 None:intergenic 40.0%
! AATGCCTAGTGGTATTTTGC+TGG + chr4_3:60361896-60361915 Msa0652650:intron 40.0%
! ATGCCTAGTGGTATTTTGCT+GGG + chr4_3:60361897-60361916 Msa0652650:intron 40.0%
TGAAATTGGGTGTTAGGAGA+TGG + chr4_3:60361961-60361980 Msa0652650:intron 40.0%
ACAGTAGTACAGAACTCCTA+CGG - chr4_3:60362257-60362276 None:intergenic 40.0%
! AGTAGCTTAAGAAGTACGCT+CGG + chr4_3:60362790-60362809 Msa0652650:intron 40.0%
TCTTCAAACATGCACACGAA+TGG - chr4_3:60362849-60362868 None:intergenic 40.0%
! TCTCATCATTTCAGGTAAGG+TGG + chr4_3:60362981-60363000 Msa0652650:intron 40.0%
! CTCATCATTTCAGGTAAGGT+GGG + chr4_3:60362982-60363001 Msa0652650:intron 40.0%
ACTAGTTGCCATCAAGCTAT+TGG - chr4_3:60363080-60363099 None:intergenic 40.0%
! TGATGGCAACTAGTTTGAAG+AGG + chr4_3:60363086-60363105 Msa0652650:CDS 40.0%
!! GGAAACTCTAGCTTTGATGA+AGG - chr4_3:60363127-60363146 None:intergenic 40.0%
AATTGAGACATACTGGGAAC+CGG - chr4_3:60363148-60363167 None:intergenic 40.0%
CAATGACGTTTCATTGCATG+AGG - chr4_3:60363206-60363225 None:intergenic 40.0%
AATTGCTCCATTCCTCTAAC+AGG + chr4_3:60363229-60363248 Msa0652650:intron 40.0%
AGAATTGGGACATCAGACTT+TGG + chr4_3:60363253-60363272 Msa0652650:CDS 40.0%
GAATTGGGACATCAGACTTT+GGG + chr4_3:60363254-60363273 Msa0652650:CDS 40.0%
AATTGGGACATCAGACTTTG+GGG + chr4_3:60363255-60363274 Msa0652650:CDS 40.0%
TGAATCTTTCCGATTCCAGA+AGG + chr4_3:60363483-60363502 Msa0652650:CDS 40.0%
ATACTTCCTAGCCAACCATA+TGG + chr4_3:60363523-60363542 Msa0652650:CDS 40.0%
AAAAGGCTTGTCCATATGGT+TGG - chr4_3:60363537-60363556 None:intergenic 40.0%
ACAGAAAAGGCTTGTCCATA+TGG - chr4_3:60363541-60363560 None:intergenic 40.0%
CATAGAACGAACCTCTTTGA+AGG - chr4_3:60363747-60363766 None:intergenic 40.0%
CGGAAAATAGGCCTATTAGT+TGG - chr4_3:60363805-60363824 None:intergenic 40.0%
! ACTAATAGGCCTATTTTCCG+CGG + chr4_3:60363805-60363824 Msa0652650:CDS 40.0%
CATGAAGACATGAACTCGTT+TGG + chr4_3:60363835-60363854 Msa0652650:CDS 40.0%
!!! TCTGCAGCTACTTTTACATG+TGG - chr4_3:60363914-60363933 None:intergenic 40.0%
! AAAAGTAGCTGCAGAGTGTT+TGG + chr4_3:60363919-60363938 Msa0652650:CDS 40.0%
TCAACATGTCTTGTGAAGGA+GGG - chr4_3:60364027-60364046 None:intergenic 40.0%
TTCAACATGTCTTGTGAAGG+AGG - chr4_3:60364028-60364047 None:intergenic 40.0%
! TCAATCCAAGGCATTCACTT+CGG + chr4_3:60364055-60364074 Msa0652650:CDS 40.0%
TCGATAATCATGTCTCTCAC+AGG - chr4_3:60364126-60364145 None:intergenic 40.0%
! GAATCTGCAAGTTTTCGAAC+TGG + chr4_3:60364177-60364196 Msa0652650:intron 40.0%
ACTGGAATTGTTGATGTACG+AGG + chr4_3:60364195-60364214 Msa0652650:intron 40.0%
!! CTCTCACTGAATGGGCTTTT+GGG - chr4_3:60359270-60359289 None:intergenic 45.0%
CAAAAGCCCATTCAGTGAGA+GGG + chr4_3:60359269-60359288 Msa0652650:five_prime_UTR 45.0%
AGTGAAAGCAGTGAGTGAGT+GGG + chr4_3:60359349-60359368 Msa0652650:five_prime_UTR 45.0%
AGCGTGAAGAACTTTGGCAT+TGG - chr4_3:60359443-60359462 None:intergenic 45.0%
!! ATAGGTAGTGTTGGTGCTGT+TGG + chr4_3:60359663-60359682 Msa0652650:CDS 45.0%
TTACTTCCCTCAAGGACACT+TGG + chr4_3:60359776-60359795 Msa0652650:CDS 45.0%
GATGTTCCAAGTGTCCTTGA+GGG - chr4_3:60359785-60359804 None:intergenic 45.0%
AGATGTTCCAAGTGTCCTTG+AGG - chr4_3:60359786-60359805 None:intergenic 45.0%
ACACGACAGAACACATGAGA+AGG - chr4_3:60359843-60359862 None:intergenic 45.0%
ATGTGTATTTGTGCAGGCTG+AGG + chr4_3:60360235-60360254 Msa0652650:intron 45.0%
TATTTGTGCAGGCTGAGGAA+GGG + chr4_3:60360240-60360259 Msa0652650:intron 45.0%
GAACGATGAGGTGTATTGTC+AGG + chr4_3:60360262-60360281 Msa0652650:CDS 45.0%
! GGTGTATTGTCAGGTGTTGT+TGG + chr4_3:60360271-60360290 Msa0652650:CDS 45.0%
!! GTTGTTGGTTCCTGAAAGTG+AGG + chr4_3:60360286-60360305 Msa0652650:CDS 45.0%
ACAAGTCTCACCTCACTTTC+AGG - chr4_3:60360299-60360318 None:intergenic 45.0%
GTGCAACAAAAGTTGAGGGA+AGG + chr4_3:60360657-60360676 Msa0652650:CDS 45.0%
GCAACAAAAGTTGAGGGAAG+GGG + chr4_3:60360659-60360678 Msa0652650:CDS 45.0%
TTGAGGGAAGGGGTAATTGA+TGG + chr4_3:60360669-60360688 Msa0652650:CDS 45.0%
!! GAAGGGGTAATTGATGGTGA+TGG + chr4_3:60360675-60360694 Msa0652650:CDS 45.0%
AGAGTCTTGCAGAACATGTG+AGG - chr4_3:60360747-60360766 None:intergenic 45.0%
GCTTCTGATACTAGCACTCA+TGG + chr4_3:60360771-60360790 Msa0652650:CDS 45.0%
TCTGATACTAGCACTCATGG+TGG + chr4_3:60360774-60360793 Msa0652650:CDS 45.0%
ACACTCAAGGTAAGTACCAG+GGG - chr4_3:60360840-60360859 None:intergenic 45.0%
CACACTCAAGGTAAGTACCA+GGG - chr4_3:60360841-60360860 None:intergenic 45.0%
AAGACCTTCACAAGAGCTTG+TGG + chr4_3:60361006-60361025 Msa0652650:CDS 45.0%
TTTGCCACAAGCTCTTGTGA+AGG - chr4_3:60361013-60361032 None:intergenic 45.0%
TTCACAAGAGCTTGTGGCAA+AGG + chr4_3:60361012-60361031 Msa0652650:CDS 45.0%
TATGCCGAAACTTCCATTCC+TGG - chr4_3:60361048-60361067 None:intergenic 45.0%
AATGTAGGTCATCTTACCGG+AGG - chr4_3:60361263-60361282 None:intergenic 45.0%
AATTGAGATTGGGAATCCGC+AGG + chr4_3:60361364-60361383 Msa0652650:CDS 45.0%
ATTGAGATTGGGAATCCGCA+GGG + chr4_3:60361365-60361384 Msa0652650:CDS 45.0%
GGCTACCAAGATTCAATTGC+TGG - chr4_3:60361434-60361453 None:intergenic 45.0%
ACTCAGTTGGAATGAGGTTC+AGG + chr4_3:60361695-60361714 Msa0652650:CDS 45.0%
CTGATGTGGATCCTGTTAGA+TGG + chr4_3:60361857-60361876 Msa0652650:CDS 45.0%
TTTGATCCAGGCCATCTAAC+AGG - chr4_3:60361871-60361890 None:intergenic 45.0%
CACAGGAGTTTCCTTAACTG+CGG - chr4_3:60361997-60362016 None:intergenic 45.0%
CCTGTGTCATCCTGTCATAT+GGG + chr4_3:60362071-60362090 Msa0652650:intron 45.0%
CTGTGTCATCCTGTCATATG+GGG + chr4_3:60362072-60362091 Msa0652650:intron 45.0%
TAACACAAGCACCTAAGTGC+AGG - chr4_3:60362177-60362196 None:intergenic 45.0%
TGGCACACTTTCAAAACCGT+AGG + chr4_3:60362238-60362257 Msa0652650:intron 45.0%
TTCCACCACCAATAGCTTGA+TGG + chr4_3:60363069-60363088 Msa0652650:CDS 45.0%
AGTTGCCATCAAGCTATTGG+TGG - chr4_3:60363077-60363096 None:intergenic 45.0%
AGTTTGAAGAGGACCAAGAC+TGG + chr4_3:60363097-60363116 Msa0652650:CDS 45.0%
TGATGAAGGCAATCCAGTCT+TGG - chr4_3:60363113-60363132 None:intergenic 45.0%
GTCCCAATTCTACCTGTTAG+AGG - chr4_3:60363244-60363263 None:intergenic 45.0%
!! GAATTACAGAGGTGCTATCC+CGG + chr4_3:60363376-60363395 Msa0652650:CDS 45.0%
GATGTTTCCTGCAATGGCTT+TGG + chr4_3:60363460-60363479 Msa0652650:CDS 45.0%
AGATTCACCAAAGCCATTGC+AGG - chr4_3:60363470-60363489 None:intergenic 45.0%
!! CTTGCAAGACCTTCTGGAAT+CGG - chr4_3:60363495-60363514 None:intergenic 45.0%
! ACAAGCCTTTTCTGTCAACG+AGG + chr4_3:60363546-60363565 Msa0652650:CDS 45.0%
ACAAGCCTCGTTGACAGAAA+AGG - chr4_3:60363554-60363573 None:intergenic 45.0%
GTCAACGAGGCTTGTAGAAA+TGG + chr4_3:60363559-60363578 Msa0652650:CDS 45.0%
GCTTGTAGAAATGGTCGCTT+TGG + chr4_3:60363568-60363587 Msa0652650:CDS 45.0%
!! GGTCGCTTTGGACTTTTTGA+TGG + chr4_3:60363580-60363599 Msa0652650:CDS 45.0%
!! ACTTTTTGATGGTCACCACC+AGG + chr4_3:60363591-60363610 Msa0652650:CDS 45.0%
TGCCAAGATCCACAAATGGA+TGG + chr4_3:60363614-60363633 Msa0652650:CDS 45.0%
GACCATCCATTTGTGGATCT+TGG - chr4_3:60363619-60363638 None:intergenic 45.0%
CAGAGAAGACCATCCATTTG+TGG - chr4_3:60363626-60363645 None:intergenic 45.0%
TGCTGGTACATCAACACTGA+TGG - chr4_3:60363673-60363692 None:intergenic 45.0%
GAGGATAACGTCCTTCAAAG+AGG + chr4_3:60363733-60363752 Msa0652650:CDS 45.0%
! CTAATAGGCCTATTTTCCGC+GGG + chr4_3:60363806-60363825 Msa0652650:CDS 45.0%
GAGTTCATGTCTTCATGAGC+TGG - chr4_3:60363832-60363851 None:intergenic 45.0%
TGGTACACATTCACGCGATT+TGG + chr4_3:60363855-60363874 Msa0652650:CDS 45.0%
TTGGTTGCACTACAGAGAAG+CGG + chr4_3:60363874-60363893 Msa0652650:CDS 45.0%
GTCACTTGCCAGATAAATCC+TGG + chr4_3:60363997-60364016 Msa0652650:CDS 45.0%
ATGCATGCTAAGACTGATGC+TGG + chr4_3:60364393-60364412 Msa0652650:three_prime_UTR 45.0%
!!! ATGTTTTTTTTTTTTTTTTT+TGG + chr4_3:60360321-60360340 Msa0652650:intron 5.0%
!! CACTGAATGGGCTTTTGGGT+AGG - chr4_3:60359266-60359285 None:intergenic 50.0%
!! CCTCTCACTGAATGGGCTTT+TGG - chr4_3:60359271-60359290 None:intergenic 50.0%
CCAAAAGCCCATTCAGTGAG+AGG + chr4_3:60359268-60359287 Msa0652650:five_prime_UTR 50.0%
GAGTGAAAGCAGTGAGTGAG+TGG + chr4_3:60359348-60359367 Msa0652650:five_prime_UTR 50.0%
! GCAGAGAGCGTGAAGAACTT+TGG - chr4_3:60359449-60359468 None:intergenic 50.0%
!! AGTGTTGGTGCTGTTGGTTC+TGG + chr4_3:60359669-60359688 Msa0652650:CDS 50.0%
GTATTTGTGCAGGCTGAGGA+AGG + chr4_3:60360239-60360258 Msa0652650:intron 50.0%
!! GATGGTGATGGTGATGGTGA+AGG + chr4_3:60360687-60360706 Msa0652650:CDS 50.0%
!! TGATGGTGATGGTGAAGGAG+AGG + chr4_3:60360692-60360711 Msa0652650:CDS 50.0%
CAGGGGAGGAAAGCAATCTT+CGG - chr4_3:60360823-60360842 None:intergenic 50.0%
GCACACTCAAGGTAAGTACC+AGG - chr4_3:60360842-60360861 None:intergenic 50.0%
ACGGCCAGGAATGGAAGTTT+CGG + chr4_3:60361041-60361060 Msa0652650:CDS 50.0%
GTCGTAAGCAAATGCCTTCG+TGG - chr4_3:60361183-60361202 None:intergenic 50.0%
!! CGAAGGCATTTGCTTACGAC+TGG + chr4_3:60361183-60361202 Msa0652650:CDS 50.0%
GGCATTTGCTTACGACTGGA+TGG + chr4_3:60361187-60361206 Msa0652650:CDS 50.0%
GAGATGCTGTTCTGTTCCTC+CGG + chr4_3:60361244-60361263 Msa0652650:CDS 50.0%
GGTCCCAGCAAAATACCACT+AGG - chr4_3:60361903-60361922 None:intergenic 50.0%
GCTTGTTCTGACCGCAGTTA+AGG + chr4_3:60361983-60362002 Msa0652650:intron 50.0%
CGCAGTTAAGGAAACTCCTG+TGG + chr4_3:60361995-60362014 Msa0652650:intron 50.0%
GCCTGTGTCATCCTGTCATA+TGG + chr4_3:60362070-60362089 Msa0652650:intron 50.0%
CCCATATGACAGGATGACAC+AGG - chr4_3:60362074-60362093 None:intergenic 50.0%
AGGCTTCAACCCCATATGAC+AGG - chr4_3:60362084-60362103 None:intergenic 50.0%
TCAGGTAAGGTGGGATGACA+TGG + chr4_3:60362991-60363010 Msa0652650:intron 50.0%
GGGATGACATGGAAGCTTCA+AGG + chr4_3:60363002-60363021 Msa0652650:CDS 50.0%
TGGAAGCTTCAAGGCTCAAC+AGG + chr4_3:60363011-60363030 Msa0652650:CDS 50.0%
GGAAGCTTCAAGGCTCAACA+GGG + chr4_3:60363012-60363031 Msa0652650:CDS 50.0%
GCTCAACAGGGTTTCACCAT+GGG + chr4_3:60363024-60363043 Msa0652650:CDS 50.0%
TGCCATCAAGCTATTGGTGG+TGG - chr4_3:60363074-60363093 None:intergenic 50.0%
! CAGACTTTGGGGAATCACTG+CGG + chr4_3:60363266-60363285 Msa0652650:CDS 50.0%
CTTGACCTTGCAAGACCTTC+TGG - chr4_3:60363294-60363313 None:intergenic 50.0%
TATCCCGGTTCAACCTATCC+CGG + chr4_3:60363391-60363410 Msa0652650:CDS 50.0%
TTTCCTGTTGAAGCGATCCC+GGG - chr4_3:60363412-60363431 None:intergenic 50.0%
GTTTCCTGTTGAAGCGATCC+CGG - chr4_3:60363413-60363432 None:intergenic 50.0%
CGATTCCAGAAGGTCTTGCA+AGG + chr4_3:60363493-60363512 Msa0652650:CDS 50.0%
CTTGACCTTGCAAGACCTTC+TGG - chr4_3:60363294-60363313 None:intergenic 50.0%
! GCTTGTCCATATGGTTGGCT+AGG - chr4_3:60363532-60363551 None:intergenic 50.0%
CATTTGTGGATCTTGGCACC+TGG - chr4_3:60363612-60363631 None:intergenic 50.0%
CAGGTGCCAAGATCCACAAA+TGG + chr4_3:60363610-60363629 Msa0652650:CDS 50.0%
AATCCATGGTTGACGCTTGC+TGG - chr4_3:60363690-60363709 None:intergenic 50.0%
TGAAGGACGTTATCCTCCAC+CGG - chr4_3:60363730-60363749 None:intergenic 50.0%
CTGCCTCAACGCCAACTAAT+AGG + chr4_3:60363791-60363810 Msa0652650:CDS 50.0%
AGGCCTATTAGTTGGCGTTG+AGG - chr4_3:60363797-60363816 None:intergenic 50.0%
ACAGAGAAGCGGTCAAGAGT+TGG + chr4_3:60363885-60363904 Msa0652650:CDS 50.0%
!! ATTTGCAATGGGAGCACCCT+CGG - chr4_3:60363956-60363975 None:intergenic 50.0%
ATCTGGCAAGTGACTGCAGA+GGG - chr4_3:60363991-60364010 None:intergenic 50.0%
TATCTGGCAAGTGACTGCAG+AGG - chr4_3:60363992-60364011 None:intergenic 50.0%
AGGGAGGTCCAGGATTTATC+TGG - chr4_3:60364008-60364027 None:intergenic 50.0%
ACATGTCTTGTGAAGGAGGG+AGG - chr4_3:60364024-60364043 None:intergenic 50.0%
TTGCTCCGAAGTGAATGCCT+TGG - chr4_3:60364063-60364082 None:intergenic 50.0%
! AAGGCATTCACTTCGGAGCA+AGG + chr4_3:60364062-60364081 Msa0652650:CDS 50.0%
!! CTAAGACTGATGCTGGCTTG+AGG + chr4_3:60364400-60364419 Msa0652650:three_prime_UTR 50.0%
!! GGTGCTGTTGGTTCTGGTTC+TGG + chr4_3:60359675-60359694 Msa0652650:CDS 55.0%
GAGCTATGGCATGCTTGTGC+TGG + chr4_3:60359714-60359733 Msa0652650:CDS 55.0%
CGAAGATTGCTTTCCTCCCC+TGG + chr4_3:60360821-60360840 Msa0652650:CDS 55.0%
CTCAAGGTAAGTACCAGGGG+AGG - chr4_3:60360837-60360856 None:intergenic 55.0%
CTTGTGGCAAAGGACCTGCA+CGG + chr4_3:60361022-60361041 Msa0652650:CDS 55.0%
CTGAAGATGCTGCAGAGCGA+AGG + chr4_3:60361731-60361750 Msa0652650:CDS 55.0%
GTGGATCCTGTTAGATGGCC+TGG + chr4_3:60361862-60361881 Msa0652650:CDS 55.0%
GACAGGATGACACAGGCATG+AGG - chr4_3:60362067-60362086 None:intergenic 55.0%
GGCTCAACAGGGTTTCACCA+TGG + chr4_3:60363023-60363042 Msa0652650:CDS 55.0%
! GTGGTGGAAGATGAGCCTGA+GGG - chr4_3:60363058-60363077 None:intergenic 55.0%
GGAATCACTGCGGTTCCAGA+AGG + chr4_3:60363276-60363295 Msa0652650:CDS 55.0%
CGGTTCCAGAAGGTCTTGCA+AGG + chr4_3:60363286-60363305 Msa0652650:CDS 55.0%
ATCCCGGTTCAACCTATCCC+GGG + chr4_3:60363392-60363411 Msa0652650:CDS 55.0%
! ATCCCGGGATAGGTTGAACC+GGG - chr4_3:60363397-60363416 None:intergenic 55.0%
! GATCCCGGGATAGGTTGAAC+CGG - chr4_3:60363398-60363417 None:intergenic 55.0%
TGTTGAAGCGATCCCGGGAT+AGG - chr4_3:60363407-60363426 None:intergenic 55.0%
TATCCCGGGATCGCTTCAAC+AGG + chr4_3:60363406-60363425 Msa0652650:CDS 55.0%
TTGTGGATCTTGGCACCTGG+TGG - chr4_3:60363609-60363628 None:intergenic 55.0%
GTACCAGCAAGCGTCAACCA+TGG + chr4_3:60363684-60363703 Msa0652650:CDS 55.0%
GCATTCACTTCGGAGCAAGG+CGG + chr4_3:60364065-60364084 Msa0652650:CDS 55.0%
GGCTGAGGAAGGGAACGATG+AGG + chr4_3:60360250-60360269 Msa0652650:intron 60.0%
CAATCTTCGGCTGCTCGACG+AGG - chr4_3:60360810-60360829 None:intergenic 60.0%
ACTTCCATTCCTGGCCGTGC+AGG - chr4_3:60361039-60361058 None:intergenic 60.0%
TAAACGCAGGGCAGCCACGA+AGG + chr4_3:60361166-60361185 Msa0652650:intron 60.0%
CCTGAGGGCTCAATCTCCCA+TGG - chr4_3:60363043-60363062 None:intergenic 60.0%
CCATGGGAGATTGAGCCCTC+AGG + chr4_3:60363040-60363059 Msa0652650:CDS 60.0%
!! GGTGGTGGAAGATGAGCCTG+AGG - chr4_3:60363059-60363078 None:intergenic 60.0%
TGAGCTGGCCCGCGGAAAAT+AGG - chr4_3:60363817-60363836 None:intergenic 60.0%
TGTCTTCATGAGCTGGCCCG+CGG - chr4_3:60363825-60363844 None:intergenic 60.0%
CTTGTGAAGGAGGGAGGTCC+AGG - chr4_3:60364018-60364037 None:intergenic 60.0%
AGGACCTGCACGGCCAGGAA+TGG + chr4_3:60361032-60361051 Msa0652650:CDS 65.0%
GGCAAAGGACCTGCACGGCC+AGG + chr4_3:60361027-60361046 Msa0652650:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 60359225 60364630 60359225 ID=Msa0652650;Name=Msa0652650
chr4_3 mRNA 60359225 60364630 60359225 ID=Msa0652650-mRNA-1;Parent=Msa0652650;Name=Msa0652650-mRNA-1;_AED=0.09;_eAED=0.09;_QI=363|1|0.90|1|0.9|0.81|11|251|703
chr4_3 exon 60359225 60359881 60359225 ID=Msa0652650-mRNA-1:exon:16375;Parent=Msa0652650-mRNA-1
chr4_3 exon 60360251 60360307 60360251 ID=Msa0652650-mRNA-1:exon:16376;Parent=Msa0652650-mRNA-1
chr4_3 exon 60360654 60360842 60360654 ID=Msa0652650-mRNA-1:exon:16377;Parent=Msa0652650-mRNA-1
chr4_3 exon 60360992 60361076 60360992 ID=Msa0652650-mRNA-1:exon:16378;Parent=Msa0652650-mRNA-1
chr4_3 exon 60361175 60361265 60361175 ID=Msa0652650-mRNA-1:exon:16379;Parent=Msa0652650-mRNA-1
chr4_3 exon 60361350 60361514 60361350 ID=Msa0652650-mRNA-1:exon:16380;Parent=Msa0652650-mRNA-1
chr4_3 exon 60361633 60361752 60361633 ID=Msa0652650-mRNA-1:exon:16381;Parent=Msa0652650-mRNA-1
chr4_3 exon 60361831 60361906 60361831 ID=Msa0652650-mRNA-1:exon:16382;Parent=Msa0652650-mRNA-1
chr4_3 exon 60362995 60363154 60362995 ID=Msa0652650-mRNA-1:exon:16383;Parent=Msa0652650-mRNA-1
chr4_3 exon 60363251 60364107 60363251 ID=Msa0652650-mRNA-1:exon:16384;Parent=Msa0652650-mRNA-1
chr4_3 exon 60364362 60364630 60364362 ID=Msa0652650-mRNA-1:exon:16385;Parent=Msa0652650-mRNA-1
chr4_3 five_prime_UTR 60359225 60359587 60359225 ID=Msa0652650-mRNA-1:five_prime_utr;Parent=Msa0652650-mRNA-1
chr4_3 CDS 60359588 60359881 60359588 ID=Msa0652650-mRNA-1:cds;Parent=Msa0652650-mRNA-1
chr4_3 CDS 60360251 60360307 60360251 ID=Msa0652650-mRNA-1:cds;Parent=Msa0652650-mRNA-1
chr4_3 CDS 60360654 60360842 60360654 ID=Msa0652650-mRNA-1:cds;Parent=Msa0652650-mRNA-1
chr4_3 CDS 60360992 60361076 60360992 ID=Msa0652650-mRNA-1:cds;Parent=Msa0652650-mRNA-1
chr4_3 CDS 60361175 60361265 60361175 ID=Msa0652650-mRNA-1:cds;Parent=Msa0652650-mRNA-1
chr4_3 CDS 60361350 60361514 60361350 ID=Msa0652650-mRNA-1:cds;Parent=Msa0652650-mRNA-1
chr4_3 CDS 60361633 60361752 60361633 ID=Msa0652650-mRNA-1:cds;Parent=Msa0652650-mRNA-1
chr4_3 CDS 60361831 60361906 60361831 ID=Msa0652650-mRNA-1:cds;Parent=Msa0652650-mRNA-1
chr4_3 CDS 60362995 60363154 60362995 ID=Msa0652650-mRNA-1:cds;Parent=Msa0652650-mRNA-1
chr4_3 CDS 60363251 60364107 60363251 ID=Msa0652650-mRNA-1:cds;Parent=Msa0652650-mRNA-1
chr4_3 CDS 60364362 60364379 60364362 ID=Msa0652650-mRNA-1:cds;Parent=Msa0652650-mRNA-1
chr4_3 three_prime_UTR 60364380 60364630 60364380 ID=Msa0652650-mRNA-1:three_prime_utr;Parent=Msa0652650-mRNA-1
Gene Sequence

>Msa0652650

ATGATGGGTTTGATTGATCTCAACACTACTGAGGAAGATGAAACACCTTCTTCTGGTTCATCTTCAAGTACAAGTATAGGTAGTGTTGGTGCTGTTGGTTCTGGTTCTGGTTCTTCTGTTTGTTTGGAGCTATGGCATGCTTGTGCTGGTCCTATGATCTCTTTGCCAAAGAAAGGAAGTGTTGTTGTTTACTTCCCTCAAGGACACTTGGAACATCTTCATGATTTTCCGTTATCTTTTTCGGATAATATTCCTTCTCATGTGTTCTGTCGTGTTGTTGATGTCAAGCTTCATGCTGAGGAAGGGAACGATGAGGTGTATTGTCAGGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGCAACAAAAGTTGAGGGAAGGGGTAATTGATGGTGATGGTGATGGTGAAGGAGAGGATACTGATGCTGTTATGAAGTCAACGACACCTCACATGTTCTGCAAGACTCTTACTGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTACCTCGTCGAGCAGCCGAAGATTGCTTTCCTCCCCTGGATTACTCTCAACAAAGACCTTCACAAGAGCTTGTGGCAAAGGACCTGCACGGCCAGGAATGGAAGTTTCGGCATATATACAGAGGGCAGCCACGAAGGCATTTGCTTACGACTGGATGGAGTGCATTTGTTAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTCCTCCGAGGAGAAGATGGCGAATTGAGATTGGGAATCCGCAGGGCAGCTCAATTAAAAAATTGCAGTAACTTTTCATCTATCTTTGGCCAGCAATTGAATCTTGGTAGCCTTAAAGACATAGTTAATGCTTTATCTACTAGATGTGCCTTTAGCATACACTACAATCCAAGGATTGGTTCATCTGAGTTCATCATACCTATCCACAAATTCTTAAAGAGCCTTGATTATTCTTACTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAATCTGAAGATGCTGCAGAGCGAAGATTCACAGGACTAATTATTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAAATGCCTAGTGGTAAGGTGGGATGACATGGAAGCTTCAAGGCTCAACAGGGTTTCACCATGGGAGATTGAGCCCTCAGGCTCATCTTCCACCACCAATAGCTTGATGGCAACTAGTTTGAAGAGGACCAAGACTGGATTGCCTTCATCAAAGCTAGAGTTTCCGGTTCCCAGTAGAATTGGGACATCAGACTTTGGGGAATCACTGCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGCATTGATACTACTTTCAATAGTATCAGTGCTCATAGTCACCACCAGTTATCTGAATTACAGAGGTGCTATCCCGGTTCAACCTATCCCGGGATCGCTTCAACAGGAAACAACATCAGAATCCCACAAATGAATTCTGATGTTTCCTGCAATGGCTTTGGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGACAAGCCTTTTCTGTCAACGAGGCTTGTAGAAATGGTCGCTTTGGACTTTTTGATGGTCACCACCAGGTGCCAAGATCCACAAATGGATGGTCTTCTCTGACGAGTAACAACTCACATTTTCATCCATCAGTGTTGATGTACCAGCAAGCGTCAACCATGGATTATAATAACAAAATTAATCCGGTGGAGGATAACGTCCTTCAAAGAGGTTCGTTCTATGCTTCTGAAATGAAAGATGGTACATCTGCCTCAACGCCAACTAATAGGCCTATTTTCCGCGGGCCAGCTCATGAAGACATGAACTCGTTTGGTACACATTCACGCGATTTGGTTGCACTACAGAGAAGCGGTCAAGAGTTGGTTTCCACATGTAAAAGTAGCTGCAGAGTGTTTGGTTTTTCATTAACCGAGGGTGCTCCCATTGCAAATAAAGATGCAGAACCCTCTGCAGTCACTTGCCAGATAAATCCTGGACCTCCCTCCTTCACAAGACATGTTGAAGATGATTTCAATCCAAGGCATTCACTTCGGAGCAAGGCGGTTGAAAATTACTATACCAAAGGTGTGCTGCAGTATTGA
Protein sequence

>Msa0652650

MMGLIDLNTTEEDETPSSGSSSSTSIGSVGAVGSGSGSSVCLELWHACAGPMISLPKKGSVVVYFPQGHLEHLHDFPLSFSDNIPSHVFCRVVDVKLHAEEGNDEVYCQVLLVPESEQVQQKLREGVIDGDGDGEGEDTDAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKNCSNFSSIFGQQLNLGSLKDIVNALSTRCAFSIHYNPRIGSSEFIIPIHKFLKSLDYSYSVGMRFRMRFESEDAAERRFTGLIIGITDVDPVRWPGSKWKCLVVRWDDMEASRLNRVSPWEIEPSGSSSTTNSLMATSLKRTKTGLPSSKLEFPVPSRIGTSDFGESLRFQKVLQGQEILGIDTTFNSISAHSHHQLSELQRCYPGSTYPGIASTGNNIRIPQMNSDVSCNGFGESFRFQKVLQGQEILPSQPYGQAFSVNEACRNGRFGLFDGHHQVPRSTNGWSSLTSNNSHFHPSVLMYQQASTMDYNNKINPVEDNVLQRGSFYASEMKDGTSASTPTNRPIFRGPAHEDMNSFGTHSRDLVALQRSGQELVSTCKSSCRVFGFSLTEGAPIANKDAEPSAVTCQINPGPPSFTRHVEDDFNPRHSLRSKAVENYYTKGVLQY*