AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050790 MtrunA17_Chr1g0155761 96.774 403 2 5 1 395 1 400 0.0 769
Msa0050790 MtrunA17_Chr3g0142131 82.663 398 62 6 1 395 1 394 0.0 636
Msa0050790 MtrunA17_Chr6g0483401 57.808 365 122 4 30 394 19 351 1.78e-141 407
Msa0050790 MtrunA17_Chr5g0407971 41.003 339 199 1 18 356 8 345 3.63e-85 264
Msa0050790 MtrunA17_Chr5g0407991 37.958 382 198 4 18 382 6 365 2.60e-84 262
Msa0050790 MtrunA17_Chr5g0408001 37.403 385 204 4 18 383 7 373 8.47e-84 260
Msa0050790 MtrunA17_Chr5g0408041 40.331 362 209 3 23 382 13 369 5.08e-83 259
Msa0050790 MtrunA17_Chr5g0408031 39.888 356 205 3 18 371 7 355 2.36e-82 256
Msa0050790 MtrunA17_Chr1g0160171 38.764 356 194 3 1 354 1 334 6.78e-80 250
Msa0050790 MtrunA17_Chr7g0255561 38.551 345 189 2 18 356 11 338 2.59e-79 249
Msa0050790 MtrunA17_Chr7g0255581 38.551 345 189 2 18 356 11 338 2.59e-79 249
Msa0050790 MtrunA17_Chr8g0369841 38.596 342 203 4 18 356 6 343 3.97e-79 248
Msa0050790 MtrunA17_Chr8g0354121 38.643 339 196 2 18 355 10 337 3.90e-77 244
Msa0050790 MtrunA17_Chr3g0114691 36.047 344 207 2 18 361 17 347 8.95e-77 243
Msa0050790 MtrunA17_Chr1g0160181 39.003 341 194 2 23 362 20 347 1.09e-76 242
Msa0050790 MtrunA17_Chr1g0186641 36.338 355 207 5 18 370 10 347 5.44e-76 239
Msa0050790 MtrunA17_Chr5g0404811 47.348 264 113 4 129 387 1 243 1.09e-75 235
Msa0050790 MtrunA17_Chr1g0186601 35.754 358 210 4 18 373 13 352 1.68e-75 238
Msa0050790 MtrunA17_Chr1g0186611 34.734 357 213 3 18 372 13 351 3.64e-75 237
Msa0050790 MtrunA17_Chr1g0171301 34.454 357 216 4 9 362 2 343 4.76e-75 237
Msa0050790 MtrunA17_Chr3g0081421 38.841 345 194 4 14 354 9 340 2.12e-74 236
Msa0050790 MtrunA17_Chr2g0284261 35.398 339 202 2 18 356 5 326 1.02e-73 234
Msa0050790 MtrunA17_Chr6g0463971 35.795 352 205 4 15 362 10 344 1.27e-72 231
Msa0050790 MtrunA17_Chr3g0081511 38.551 345 185 4 18 355 14 338 1.79e-72 231
Msa0050790 MtrunA17_Chr8g0334761 38.081 344 197 4 12 354 1 329 3.65e-72 230
Msa0050790 MtrunA17_Chr1g0164831 34.930 355 210 5 24 378 6 339 8.56e-72 228
Msa0050790 MtrunA17_Chr1g0186561 36.857 350 202 4 18 365 13 345 3.09e-71 227
Msa0050790 MtrunA17_Chr1g0186571 34.770 348 207 5 18 363 10 339 1.28e-70 226
Msa0050790 MtrunA17_Chr3g0114731 37.952 332 189 2 23 354 20 334 1.82e-70 226
Msa0050790 MtrunA17_Chr7g0271561 35.045 331 207 1 24 354 10 332 9.61e-69 221
Msa0050790 MtrunA17_Chr1g0182291 36.364 341 193 3 18 354 12 332 2.13e-68 220
Msa0050790 MtrunA17_Chr2g0310441 36.461 373 213 8 24 388 13 369 6.82e-68 219
Msa0050790 MtrunA17_Chr4g0059311 34.024 338 207 4 25 361 15 337 7.71e-68 218
Msa0050790 MtrunA17_Chr3g0114711 34.492 374 192 4 18 354 11 368 1.47e-67 219
Msa0050790 MtrunA17_Chr3g0129601 33.511 376 212 4 6 368 14 364 5.05e-66 214
Msa0050790 MtrunA17_Chr1g0184221 32.133 361 206 4 18 361 13 351 1.24e-65 213
Msa0050790 MtrunA17_Chr7g0263101 35.988 339 187 4 24 354 16 332 1.59e-65 213
Msa0050790 MtrunA17_Chr3g0114701 37.612 335 195 2 23 356 11 332 1.12e-64 211
Msa0050790 MtrunA17_Chr2g0278561 33.938 386 227 4 10 385 4 371 1.69e-64 211
Msa0050790 MtrunA17_Chr8g0383731 35.329 334 205 2 23 355 7 330 9.65e-64 207
Msa0050790 MtrunA17_Chr1g0160111 32.923 325 209 2 30 354 16 331 2.35e-63 207
Msa0050790 MtrunA17_Chr3g0126101 35.220 318 186 4 38 354 23 321 7.04e-62 202
Msa0050790 MtrunA17_Chr3g0129571 33.134 335 209 5 23 354 9 331 5.56e-61 201
Msa0050790 MtrunA17_Chr8g0334771 36.337 344 203 3 12 354 1 329 3.48e-60 199
Msa0050790 MtrunA17_Chr3g0129591 33.832 334 208 3 23 354 7 329 4.42e-60 198
Msa0050790 MtrunA17_Chr4g0073241 32.984 382 216 9 24 395 11 362 3.80e-59 196
Msa0050790 MtrunA17_Chr8g0334751 35.676 370 212 6 24 392 14 358 1.78e-58 194
Msa0050790 MtrunA17_Chr5g0413961 35.530 349 204 3 11 357 2 331 3.78e-58 193
Msa0050790 MtrunA17_Chr2g0290611 35.952 331 199 3 26 356 17 334 4.52e-57 191
Msa0050790 MtrunA17_Chr2g0278541 35.362 345 200 4 24 360 15 344 1.71e-55 187
Msa0050790 MtrunA17_Chr2g0278551 34.294 347 213 3 26 372 17 348 4.40e-55 186
Msa0050790 MtrunA17_Chr5g0413941 31.579 342 217 4 16 356 2 327 1.65e-54 184
Msa0050790 MtrunA17_Chr5g0413921 30.347 346 224 3 18 362 4 333 9.99e-53 179
Msa0050790 MtrunA17_Chr4g0050891 32.081 346 213 3 10 349 2 331 5.91e-52 177
Msa0050790 MtrunA17_Chr3g0129581 32.036 334 214 3 23 354 7 329 6.57e-52 177
Msa0050790 MtrunA17_Chr1g0150151 33.828 337 199 5 25 355 15 333 5.11e-51 175
Msa0050790 MtrunA17_Chr4g0051021 30.270 370 244 3 26 394 19 375 8.97e-51 174
Msa0050790 MtrunA17_Chr5g0404801 68.908 119 37 0 16 134 2 120 2.57e-50 165
Msa0050790 MtrunA17_Chr2g0332001 32.440 336 202 4 26 356 43 358 4.15e-50 173
Msa0050790 MtrunA17_Chr5g0413951 30.514 331 213 5 26 355 12 326 9.72e-50 171
Msa0050790 MtrunA17_Chr5g0428881 29.101 378 247 4 15 383 9 374 2.43e-49 171
Msa0050790 MtrunA17_Chr1g0177221 34.629 283 165 4 1 282 1 264 2.61e-48 165
Msa0050790 MtrunA17_Chr5g0413931 30.514 331 213 5 26 355 11 325 1.70e-46 162
Msa0050790 MtrunA17_Chr4g0050941 31.746 378 241 4 24 395 15 381 1.73e-46 163
Msa0050790 MtrunA17_Chr4g0056081 31.054 351 212 10 25 365 18 348 3.32e-43 154
Msa0050790 MtrunA17_Chr4g0050881 29.679 374 224 8 15 375 3 350 7.64e-43 153
Msa0050790 MtrunA17_Chr7g0227921 31.548 336 204 5 25 355 15 329 8.78e-43 153
Msa0050790 MtrunA17_Chr4g0050931 29.598 348 188 3 14 356 5 300 2.22e-41 148
Msa0050790 MtrunA17_Chr1g0211801 32.685 257 157 3 26 282 16 256 1.29e-40 145
Msa0050790 MtrunA17_Chr5g0441761 27.576 330 219 2 25 354 18 327 1.38e-39 144
Msa0050790 MtrunA17_Chr5g0399281 30.792 341 215 8 18 354 5 328 4.64e-39 143
Msa0050790 MtrunA17_Chr5g0429001 29.126 309 207 3 88 395 18 315 6.62e-38 139
Msa0050790 MtrunA17_Chr3g0084091 31.752 274 169 3 101 373 10 266 2.23e-37 137
Msa0050790 MtrunA17_Chr4g0051001 29.217 332 218 4 5 332 12 330 3.71e-37 137
Msa0050790 MtrunA17_Chr6g0451211 28.704 324 198 7 41 355 32 331 7.70e-37 137
Msa0050790 MtrunA17_Chr6g0451201 29.859 355 224 6 41 395 32 361 4.20e-34 130
Msa0050790 MtrunA17_Chr6g0451251 30.321 343 217 6 41 380 32 355 2.15e-32 125
Msa0050790 MtrunA17_Chr3g0126091 25.723 346 233 8 24 362 14 342 1.15e-31 123
Msa0050790 MtrunA17_Chr6g0451171 28.354 328 213 7 30 355 21 328 2.17e-31 122
Msa0050790 MtrunA17_Chr2g0278021 35.586 222 135 2 135 356 1 214 4.65e-31 119
Msa0050790 MtrunA17_Chr6g0451261 27.124 306 198 5 35 335 25 310 2.17e-30 123
Msa0050790 MtrunA17_Chr8g0334721 38.194 144 84 2 247 390 2 140 7.36e-29 110
Msa0050790 MtrunA17_Chr8g0334711 34.272 213 123 4 18 229 7 203 6.80e-28 109
Msa0050790 MtrunA17_Chr6g0451191 28.054 221 141 3 135 355 1 203 6.06e-21 90.9
Msa0050790 MtrunA17_Chr8g0334731 29.224 219 119 5 13 229 3 187 5.46e-19 84.7
Msa0050790 MtrunA17_Chr1g0177231 38.947 95 57 1 268 362 15 108 4.33e-16 74.3
Msa0050790 MtrunA17_Chr2g0278031 39.815 108 65 0 26 133 19 126 9.99e-15 70.5
Msa0050790 MtrunA17_Chr4g0050911 35.938 128 76 1 106 233 16 137 2.27e-14 70.5
Msa0050790 MtrunA17_Chr1g0182261 33.077 130 84 3 230 356 83 212 2.27e-14 72.0
Msa0050790 MtrunA17_Chr1g0172891 40.541 74 44 0 289 362 13 86 3.01e-14 68.9
Msa0050790 MtrunA17_Chr1g0211811 42.254 71 41 0 284 354 1 71 5.00e-14 67.4
Msa0050790 MtrunA17_Chr4g0050921 33.333 102 68 0 234 335 3 104 6.81e-14 68.2
Msa0050790 MtrunA17_Chr1g0172881 28.667 150 83 4 134 282 23 149 1.08e-11 62.8
Msa0050790 MtrunA17_Chr8g0334741 28.571 140 71 3 247 382 2 116 7.10e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050790 AT1G75500.1 74.687 399 87 7 1 395 1 389 0.0 589
Msa0050790 AT1G75500.2 74.687 399 87 7 1 395 1 389 0.0 589
Msa0050790 AT3G53210.1 52.632 380 161 3 16 390 4 369 6.50e-142 409
Msa0050790 AT3G18200.2 56.131 367 144 2 16 382 29 378 4.10e-141 407
Msa0050790 AT3G53210.3 57.143 266 100 2 16 281 4 255 1.85e-105 312
Msa0050790 AT3G53210.2 50.333 300 130 3 96 390 27 312 4.88e-102 305
Msa0050790 AT3G18200.1 50.943 265 113 2 118 382 1 248 1.07e-85 261
Msa0050790 AT3G45870.1 42.169 332 187 3 18 349 8 334 1.44e-77 245
Msa0050790 AT4G30420.2 37.371 388 217 7 18 395 5 376 2.54e-77 244
Msa0050790 AT5G45370.2 37.326 359 222 3 18 375 16 372 2.58e-77 244
Msa0050790 AT5G45370.4 37.326 359 222 3 18 375 16 372 2.58e-77 244
Msa0050790 AT5G45370.1 37.709 358 198 3 18 375 16 348 7.16e-77 242
Msa0050790 AT4G30420.1 36.911 382 215 6 24 395 1 366 1.02e-76 242
Msa0050790 AT5G07050.1 38.136 354 196 3 23 368 19 357 2.42e-74 237
Msa0050790 AT2G39510.1 37.838 333 191 2 24 355 10 327 7.48e-73 232
Msa0050790 AT3G45870.8 41.587 315 179 3 18 332 8 317 1.78e-71 227
Msa0050790 AT1G09380.1 38.602 329 191 1 24 352 10 327 3.06e-71 228
Msa0050790 AT4G08290.1 35.733 375 228 2 18 392 9 370 3.41e-71 228
Msa0050790 AT1G21890.1 34.262 359 230 1 23 381 12 364 5.70e-71 228
Msa0050790 AT1G44800.1 34.188 351 210 2 18 362 7 342 8.25e-71 227
Msa0050790 AT4G08300.1 34.384 349 215 3 18 365 7 342 2.54e-70 226
Msa0050790 AT4G19185.1 39.169 337 198 4 23 356 22 354 6.48e-70 225
Msa0050790 AT3G30340.1 33.828 337 209 3 26 362 15 337 2.64e-68 220
Msa0050790 AT2G40900.1 36.522 345 199 3 12 356 1 325 2.88e-68 221
Msa0050790 AT2G37460.1 35.674 356 205 6 18 369 11 346 3.63e-66 215
Msa0050790 AT1G43650.1 33.144 353 216 2 23 373 8 342 5.31e-63 206
Msa0050790 AT5G13670.1 33.628 339 211 3 18 355 4 329 3.49e-62 205
Msa0050790 AT4G01440.1 35.294 323 194 3 41 363 29 336 2.70e-61 202
Msa0050790 AT4G01430.1 33.934 333 205 4 24 354 11 330 1.52e-60 200
Msa0050790 AT1G01070.1 33.626 342 212 3 16 356 10 337 8.08e-60 198
Msa0050790 AT1G11450.3 35.030 334 200 4 24 356 18 335 1.17e-59 197
Msa0050790 AT3G45870.9 42.264 265 148 3 18 282 8 267 2.35e-59 194
Msa0050790 AT1G21890.2 35.161 310 195 1 23 332 12 315 4.05e-59 196
Msa0050790 AT3G56620.1 33.721 344 203 3 12 352 1 322 3.57e-58 194
Msa0050790 AT4G01440.3 35.959 292 172 3 41 332 29 305 7.71e-56 186
Msa0050790 AT1G11450.5 36.156 307 179 4 51 356 1 291 1.32e-55 186
Msa0050790 AT5G64700.1 31.686 344 227 3 29 372 15 350 1.24e-54 184
Msa0050790 AT1G11460.1 33.234 334 207 3 24 356 18 336 3.44e-54 182
Msa0050790 AT1G11450.2 36.577 298 172 4 60 356 3 284 3.69e-54 181
Msa0050790 AT4G28040.1 31.471 340 203 5 18 354 4 316 1.66e-53 181
Msa0050790 AT4G28040.5 31.471 340 203 5 18 354 4 316 1.66e-53 181
Msa0050790 AT4G28040.3 31.471 340 203 5 18 354 4 316 1.66e-53 181
Msa0050790 AT4G28040.4 31.471 340 203 5 18 354 4 316 1.66e-53 181
Msa0050790 AT4G28040.2 31.471 340 203 5 18 354 4 316 1.66e-53 181
Msa0050790 AT4G01430.2 33.119 311 193 4 24 332 11 308 8.13e-52 176
Msa0050790 AT1G11450.4 34.194 310 187 4 24 332 18 311 8.54e-51 173
Msa0050790 AT4G19185.2 36.604 265 161 4 95 356 16 276 3.55e-50 172
Msa0050790 AT2G37450.2 33.140 344 185 8 24 363 11 313 5.29e-50 172
Msa0050790 AT5G45370.6 34.926 272 174 3 105 375 1 270 2.09e-49 168
Msa0050790 AT5G45370.5 34.926 272 174 3 105 375 1 270 2.09e-49 168
Msa0050790 AT1G25270.1 32.934 334 209 2 24 356 5 324 7.68e-49 169
Msa0050790 AT1G68170.2 30.607 379 243 4 14 391 5 364 3.18e-48 168
Msa0050790 AT1G01070.2 33.793 290 177 3 68 356 15 290 3.45e-48 166
Msa0050790 AT4G08290.2 36.604 265 153 3 18 281 9 259 5.22e-48 165
Msa0050790 AT1G68170.1 31.250 368 233 4 25 391 6 354 1.84e-47 166
Msa0050790 AT5G40210.1 31.953 338 189 10 25 357 16 317 5.86e-47 164
Msa0050790 AT3G28130.2 32.653 343 202 10 22 356 13 334 5.96e-47 164
Msa0050790 AT4G01450.2 35.238 315 183 2 41 354 29 323 1.02e-46 164
Msa0050790 AT3G30340.2 32.685 257 159 3 26 282 15 257 1.11e-45 159
Msa0050790 AT1G11450.1 36.822 258 146 4 100 356 2 243 4.07e-45 157
Msa0050790 AT4G01450.1 34.471 293 171 2 41 332 29 301 5.09e-45 159
Msa0050790 AT5G40240.2 28.846 364 233 4 1 357 13 357 9.22e-45 159
Msa0050790 AT5G40240.1 30.000 340 212 4 25 357 23 343 1.04e-44 159
Msa0050790 AT5G40240.3 30.000 340 212 4 25 357 23 343 1.04e-44 159
Msa0050790 AT3G28050.1 31.267 371 223 10 25 387 15 361 1.20e-44 158
Msa0050790 AT4G01440.4 36.777 242 138 3 41 282 29 255 4.09e-44 154
Msa0050790 AT3G28100.1 30.286 350 219 8 25 370 17 345 1.19e-43 155
Msa0050790 AT5G40230.1 29.223 373 223 7 25 384 24 368 1.79e-43 155
Msa0050790 AT3G28130.5 33.594 256 149 6 105 356 10 248 2.42e-42 149
Msa0050790 AT3G28130.1 33.594 256 149 6 105 356 10 248 2.42e-42 149
Msa0050790 AT1G70260.1 29.462 353 233 5 24 370 14 356 8.18e-41 148
Msa0050790 AT3G28080.1 30.473 338 210 6 25 356 17 335 9.99e-41 148
Msa0050790 AT3G28070.2 29.740 269 168 5 105 371 8 257 2.55e-40 144
Msa0050790 AT3G28080.5 31.621 253 158 3 105 356 8 246 4.51e-40 144
Msa0050790 AT3G28080.7 31.621 253 158 3 105 356 8 246 4.51e-40 144
Msa0050790 AT3G28080.8 31.621 253 158 3 105 356 8 246 4.51e-40 144
Msa0050790 AT3G28080.6 31.621 253 158 3 105 356 8 246 4.51e-40 144
Msa0050790 AT3G45870.5 38.426 216 128 3 134 349 49 259 1.92e-39 143
Msa0050790 AT3G28070.1 29.740 269 168 5 105 371 100 349 2.64e-39 144
Msa0050790 AT3G28080.2 31.621 253 158 3 105 356 89 327 2.74e-39 144
Msa0050790 AT4G01450.4 34.156 243 139 2 41 282 29 251 2.67e-38 139
Msa0050790 AT4G01440.5 32.365 241 148 3 123 363 3 228 3.92e-38 138
Msa0050790 AT4G01440.2 32.365 241 148 3 123 363 3 228 3.92e-38 138
Msa0050790 AT5G47470.1 27.920 351 225 7 9 354 17 344 2.60e-37 139
Msa0050790 AT5G47470.2 27.920 351 225 7 9 354 45 372 3.34e-37 139
Msa0050790 AT5G47470.3 27.920 351 225 7 9 354 45 372 4.26e-37 139
Msa0050790 AT2G37450.3 34.100 261 148 6 107 363 1 241 5.97e-37 135
Msa0050790 AT5G45370.3 32.780 241 159 3 136 375 74 312 8.77e-37 136
Msa0050790 AT1G43650.2 31.274 259 160 1 23 281 8 248 9.42e-36 132
Msa0050790 AT4G15540.1 28.011 357 224 5 25 380 20 344 1.79e-34 130
Msa0050790 AT4G15540.2 28.011 357 224 5 25 380 20 344 1.79e-34 130
Msa0050790 AT4G16620.1 27.966 354 230 6 30 375 20 356 8.57e-34 129
Msa0050790 AT3G45870.6 37.186 199 120 3 134 332 49 242 1.40e-33 126
Msa0050790 AT3G45870.7 37.186 199 120 3 134 332 49 242 1.40e-33 126
Msa0050790 AT4G01450.3 35.071 211 116 2 41 250 29 219 4.15e-33 124
Msa0050790 AT5G64700.2 32.500 240 154 3 29 268 15 246 3.07e-32 122
Msa0050790 AT3G45870.2 37.234 188 113 3 162 349 1 183 1.24e-30 117
Msa0050790 AT1G60050.1 27.554 323 221 3 38 356 29 342 1.28e-30 121
Msa0050790 AT3G28130.3 30.973 226 135 6 135 356 1 209 3.62e-30 116
Msa0050790 AT3G28070.3 28.261 230 148 4 105 332 100 314 6.77e-29 115
Msa0050790 AT4G01430.3 31.220 205 127 3 151 354 2 193 1.60e-28 112
Msa0050790 AT3G28070.5 26.778 239 154 5 135 371 1 220 1.30e-27 109
Msa0050790 AT3G28080.9 28.251 223 145 3 135 356 1 209 1.64e-27 109
Msa0050790 AT2G37450.1 32.479 234 134 6 134 363 61 274 6.42e-27 109
Msa0050790 AT4G24980.1 28.302 318 147 8 38 355 3 239 8.75e-26 105
Msa0050790 AT3G28130.4 31.783 258 148 9 22 271 13 250 2.20e-24 101
Msa0050790 AT3G28100.3 31.076 251 153 6 25 271 17 251 1.01e-23 99.8
Msa0050790 AT4G16620.4 27.536 276 176 5 107 375 1 259 1.71e-23 99.0
Msa0050790 AT4G16620.2 27.536 276 176 5 107 375 1 259 1.71e-23 99.0
Msa0050790 AT3G45870.3 36.913 149 89 3 134 282 49 192 1.94e-21 92.0
Msa0050790 AT3G45870.4 36.735 147 88 3 136 282 4 145 2.03e-21 90.5
Msa0050790 AT3G28100.2 37.342 158 95 3 25 180 17 172 4.35e-21 92.0
Msa0050790 AT3G28130.6 36.943 157 91 4 22 174 13 165 2.10e-20 89.4
Msa0050790 AT4G16620.3 29.279 222 139 4 30 250 20 224 5.79e-20 89.4
Msa0050790 AT3G28080.3 36.025 161 93 3 25 180 17 172 7.97e-17 80.9
Msa0050790 AT3G28080.3 33.784 74 48 1 283 356 209 281 8.84e-11 62.8
Msa0050790 AT3G28080.4 46.053 76 41 0 105 180 8 83 4.90e-16 77.0
Msa0050790 AT3G28080.4 33.784 74 48 1 283 356 120 192 5.13e-11 62.4

Find 113 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACACCAATGATTGATTT+TGG 0.075897 1_2:-4784324 Msa0050790:CDS
CAAACTAGTGTTGGTTAATT+AGG 0.160697 1_2:+4785739 None:intergenic
CTTGGATGTCTTTATCTAAT+TGG 0.160867 1_2:-4784261 Msa0050790:CDS
TTTGCTAGGCTTCAATTATT+TGG 0.186662 1_2:-4785713 Msa0050790:five_prime_UTR
TCTTCCATTTGCTTATTTCT+TGG 0.199338 1_2:-4785435 Msa0050790:CDS
TATTCTACAATGGCTGATTT+AGG 0.205011 1_2:-4785638 Msa0050790:exon
TTTCTTTATGGTTTGATTTA+CGG 0.229174 1_2:-4782904 Msa0050790:three_prime_UTR
TATGTTAGTTAATTTCTTTA+TGG 0.244766 1_2:-4782916 Msa0050790:three_prime_UTR
CTTAAACGGGGTCATCATTT+TGG 0.252308 1_2:-4782736 Msa0050790:three_prime_UTR
ACTTCCTATACATGTTTCTT+TGG 0.256420 1_2:-4784162 Msa0050790:CDS
ATCAGTGATTACATTATATC+AGG 0.276969 1_2:-4784412 Msa0050790:CDS
TTGCATTTGCAGTACAAATA+TGG 0.283549 1_2:-4783937 Msa0050790:CDS
GCAATTTCTTCTTATTGCTT+TGG 0.291149 1_2:-4784133 Msa0050790:CDS
TGGGAGTGGTTTCAAAAGTA+TGG 0.304445 1_2:-4782803 Msa0050790:three_prime_UTR
AAATTTCTCAAGATTAGAAT+TGG 0.317880 1_2:-4782823 Msa0050790:three_prime_UTR
ATCATGGCTTCTATTGCTTT+AGG 0.322920 1_2:-4783848 Msa0050790:CDS
CTAATTAACCAACACTAGTT+TGG 0.326664 1_2:-4785738 Msa0050790:five_prime_UTR
GATGCTTTAGCGTGGCTTGC+GGG 0.332227 1_2:+4783189 None:intergenic
CAGAGGAAGTTTAAATTAAT+CGG 0.338959 1_2:+4784965 None:intergenic
CTAACTAACCGCGTATAAAA+TGG 0.340348 1_2:+4784056 None:intergenic
GGTTTCAAAAGTATGGTAAT+TGG 0.340685 1_2:-4782796 Msa0050790:three_prime_UTR
CCTTTATATTACAGGATCAT+TGG 0.349819 1_2:-4783327 Msa0050790:intron
CCACTATTTAAGTGACTACT+TGG 0.366846 1_2:+4784366 None:intergenic
CACAAATTGTGACTCTTAAA+CGG 0.370000 1_2:-4782750 Msa0050790:three_prime_UTR
ATCAAGGTTTCTACTTGCTT+GGG 0.374867 1_2:-4784682 Msa0050790:CDS
AATCAAGGTTTCTACTTGCT+TGG 0.382223 1_2:-4784683 Msa0050790:CDS
TCTTAGTAGATTATTTAGAT+TGG 0.388213 1_2:-4783043 Msa0050790:three_prime_UTR
CACACAAGCATGGTACTATA+AGG 0.389716 1_2:+4783098 None:intergenic
ATTGTTTGTCTTGGTCTGCT+TGG 0.391168 1_2:-4784236 Msa0050790:CDS
CTTAGTAGATTATTTAGATT+GGG 0.394466 1_2:-4783042 Msa0050790:three_prime_UTR
TTGCAGGGAGTGGTGGCATC+TGG 0.399814 1_2:-4783962 Msa0050790:intron
GCCCTGCAGTTTGGTTATGC+TGG 0.404103 1_2:-4785548 Msa0050790:CDS
TAATTGGACATTGTTTGTCT+TGG 0.407693 1_2:-4784245 Msa0050790:CDS
GCCATGTTGGCCCTGCAGTT+TGG 0.410120 1_2:-4785557 Msa0050790:CDS
ACAAATTGTGACTCTTAAAC+GGG 0.414592 1_2:-4782749 Msa0050790:three_prime_UTR
GCTACAACAAAAGTTTGAAC+AGG 0.438205 1_2:+4783872 None:intergenic
AACAGGATTACAGCAAATCA+AGG 0.453990 1_2:-4784698 Msa0050790:intron
GCAATGATGTTCCTATAGAC+AGG 0.454821 1_2:+4785470 None:intergenic
TTGAAAGAAATGCTCAGGCT+TGG 0.458050 1_2:-4784107 Msa0050790:CDS
ATGGGAACATGTTGTAATAG+TGG 0.458354 1_2:-4783001 Msa0050790:three_prime_UTR
GGACTTGGACTATATATAGT+TGG 0.461139 1_2:+4784387 None:intergenic
CCCTGCCATTACATTTCTCA+TGG 0.470693 1_2:-4784612 Msa0050790:CDS
AATTTCTCAAGATTAGAATT+GGG 0.471413 1_2:-4782822 Msa0050790:three_prime_UTR
CCAAGTAGTCACTTAAATAG+TGG 0.472865 1_2:-4784366 Msa0050790:CDS
ATTGTCCCAAAATCAATCAT+TGG 0.475219 1_2:+4784318 None:intergenic
TTCAAGAGCTGCACTTAACA+TGG 0.475828 1_2:-4785513 Msa0050790:CDS
TTAATTACTAAAGCTAATAG+TGG 0.477006 1_2:-4782619 Msa0050790:three_prime_UTR
AAGTCCAAAGAAACATGTAT+AGG 0.477885 1_2:+4784158 None:intergenic
CAAATATGGTGCATTGATAG+AGG 0.486474 1_2:-4783923 Msa0050790:CDS
GACGAGCAGGATACTTCTTA+AGG 0.487109 1_2:+4784193 None:intergenic
GATGGAATTGCTAAAGTAGC+AGG 0.489379 1_2:-4784459 Msa0050790:CDS
TTGGTTAATTAGGAAAAGAA+AGG 0.496181 1_2:+4785749 None:intergenic
TTTAAGTGACTACTTGGACT+TGG 0.498895 1_2:+4784372 None:intergenic
AGAAATAAGCAAATGGAAGA+AGG 0.501047 1_2:+4785438 None:intergenic
TGGACTATACTTTGTGCTGT+GGG 0.502383 1_2:-4783286 Msa0050790:CDS
TTCTCATGGCAGTCATACTA+AGG 0.503575 1_2:-4784598 Msa0050790:intron
TTTAGGAGAAGAGTTCTACT+TGG 0.503735 1_2:-4783831 Msa0050790:CDS
GCCATGAGAAATGTAATGGC+AGG 0.506658 1_2:+4784611 None:intergenic
GTTAATTAGGAAAAGAAAGG+TGG 0.513729 1_2:+4785752 None:intergenic
AGGTTTCTACTTGCTTGGGT+TGG 0.514004 1_2:-4784678 Msa0050790:CDS
ATAGTGGATGTCACTAAAAG+TGG 0.518080 1_2:-4782985 Msa0050790:three_prime_UTR
AGGAAAAGAAAGGTGGGAAG+TGG 0.518388 1_2:+4785759 None:intergenic
AACCAGCATAACCAAACTGC+AGG 0.522465 1_2:+4785546 None:intergenic
AGTATGGTAATTGGCAAGCA+TGG 0.522694 1_2:-4782787 Msa0050790:three_prime_UTR
GAGAAGAGTTCTACTTGGGC+GGG 0.532422 1_2:-4783826 Msa0050790:intron
ATGTCACTTGGTGATGCAAA+GGG 0.532729 1_2:-4784297 Msa0050790:CDS
GTGAGATTGAATCGAAAGGA+TGG 0.534056 1_2:-4784477 Msa0050790:CDS
TGTATTGCTGATGCAAAGGT+AGG 0.537203 1_2:+4784644 None:intergenic
CTCAAGATTAGAATTGGGAG+TGG 0.539135 1_2:-4782817 Msa0050790:three_prime_UTR
CTGGACTATACTTTGTGCTG+TGG 0.541801 1_2:-4783287 Msa0050790:CDS
GAAGTGACAGAAAGACGAGC+AGG 0.543364 1_2:+4784180 None:intergenic
TGATACACTGCAACAAACAC+TGG 0.547318 1_2:+4783896 None:intergenic
TTAATTCAATTATTCTACAA+TGG 0.548981 1_2:-4785648 Msa0050790:exon
CATCATTATCATGACATGGA+AGG 0.551192 1_2:-4782850 Msa0050790:three_prime_UTR
TATTAATTTGCAGGGAGTGG+TGG 0.551473 1_2:-4783969 Msa0050790:intron
GTATTGCTGATGCAAAGGTA+GGG 0.556287 1_2:+4784645 None:intergenic
TTAGGAGAAGAGTTCTACTT+GGG 0.557775 1_2:-4783830 Msa0050790:CDS
GCAGGATACTTCTTAAGGAC+AGG 0.559573 1_2:+4784198 None:intergenic
ATCATTATCATGACATGGAA+GGG 0.562114 1_2:-4782849 Msa0050790:three_prime_UTR
AGAGAAGAAATTATTTGCAA+AGG 0.564376 1_2:-4783253 Msa0050790:CDS
TAAAGCAATAGAAGCCATGA+TGG 0.564411 1_2:+4783850 None:intergenic
TCAGCTGCATGTGGCCATGT+TGG 0.564609 1_2:-4785570 Msa0050790:CDS
ACCAAACTGCAGGGCCAACA+TGG 0.565314 1_2:+4785556 None:intergenic
CAGCTTCTTCTAAGAGAATG+TGG 0.569037 1_2:-4785613 Msa0050790:CDS
AATGTCACTTGGTGATGCAA+AGG 0.570694 1_2:-4784298 Msa0050790:CDS
GGTGCAGTGTTGATAGTAGC+TGG 0.570883 1_2:-4783306 Msa0050790:CDS
TAGTGGATGTCACTAAAAGT+GGG 0.571839 1_2:-4782984 Msa0050790:three_prime_UTR
TCTGTTGAAGAAGATAGGAA+TGG 0.578628 1_2:+4783156 None:intergenic
TTAATTAGGAAAAGAAAGGT+GGG 0.579788 1_2:+4785753 None:intergenic
TCAGTGATTACATTATATCA+GGG 0.580478 1_2:-4784411 Msa0050790:CDS
TAATTACTAAAGCTAATAGT+GGG 0.588040 1_2:-4782618 Msa0050790:three_prime_UTR
TGATGCTTTAGCGTGGCTTG+CGG 0.596033 1_2:+4783188 None:intergenic
CAATGATGTTCCTATAGACA+GGG 0.596068 1_2:+4785471 None:intergenic
ATATATATATAAAAGCATAT+GGG 0.599668 1_2:+4782938 None:intergenic
GACTGCCATGAGAAATGTAA+TGG 0.601131 1_2:+4784607 None:intergenic
GTTCTGTATTGCTGATGCAA+AGG 0.604446 1_2:+4784640 None:intergenic
ATAATGACCTAGATGCATGC+TGG 0.606908 1_2:-4782669 Msa0050790:three_prime_UTR
GGAGAAGAGTTCTACTTGGG+CGG 0.607421 1_2:-4783827 Msa0050790:CDS
GTGCAGCTCTTGAAACAACA+TGG 0.618096 1_2:+4785522 None:intergenic
AGGAAGTTTAAATTAATCGG+TGG 0.623492 1_2:+4784968 None:intergenic
GCAAGTGAGATTGAATCGAA+AGG 0.625916 1_2:-4784481 Msa0050790:CDS
TCAAGAGCTGCACTTAACAT+GGG 0.631283 1_2:-4785512 Msa0050790:CDS
CCATGAGAAATGTAATGGCA+GGG 0.635566 1_2:+4784612 None:intergenic
TATCACAACACACACAAGCA+TGG 0.644681 1_2:+4783088 None:intergenic
TAGTCATCATTATCATGACA+TGG 0.647380 1_2:-4782854 Msa0050790:three_prime_UTR
CATATGGGACTAATTTCACA+AGG 0.653189 1_2:+4782953 None:intergenic
TATTGCTGATGCAAAGGTAG+GGG 0.668908 1_2:+4784646 None:intergenic
ATATGGTGCATTGATAGAGG+AGG 0.677817 1_2:-4783920 Msa0050790:CDS
ACCAGCATAACCAAACTGCA+GGG 0.678569 1_2:+4785547 None:intergenic
GGACTATACTTTGTGCTGTG+GGG 0.683443 1_2:-4783285 Msa0050790:CDS
GAGTGAGTGATGCTTTAGCG+TGG 0.695699 1_2:+4783181 None:intergenic
AGTGGATGTCACTAAAAGTG+GGG 0.697940 1_2:-4782983 Msa0050790:three_prime_UTR
CAAATTGTGACTCTTAAACG+GGG 0.725158 1_2:-4782748 Msa0050790:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAATTTTATAAATTAA+AGG - chr1_2:4783469-4783488 Msa0050790:intron 0.0%
!!! AAAAATTATTAAAGGTATAA+AGG + chr1_2:4783564-4783583 None:intergenic 10.0%
!! TCAACATAAAAAATTATTAA+AGG + chr1_2:4783572-4783591 None:intergenic 10.0%
!!! ATTTTTTTTTATTAATTTGC+AGG - chr1_2:4784316-4784335 Msa0050790:CDS 10.0%
!!! TTTTTTTTTATTAATTTGCA+GGG - chr1_2:4784317-4784336 Msa0050790:CDS 10.0%
!!! GAGTTTTTTTTTTTTTTTTA+TGG - chr1_2:4785274-4785293 Msa0050790:intron 10.0%
!!! ATATATATATAAAAGCATAT+GGG + chr1_2:4785359-4785378 None:intergenic 10.0%
!!! TATATATATATAAAAGCATA+TGG + chr1_2:4785360-4785379 None:intergenic 10.0%
!! TTAATTCAATTATTCTACAA+TGG - chr1_2:4782646-4782665 Msa0050790:three_prime_UTR 15.0%
!! AATATTAATGAAATTGTTAG+AGG + chr1_2:4782901-4782920 None:intergenic 15.0%
!! ATAATGTACAAAAATTTCAT+AGG + chr1_2:4782929-4782948 None:intergenic 15.0%
!! AATCCAATATAAAAAAACTT+TGG + chr1_2:4782966-4782985 None:intergenic 15.0%
!!! TTTTTTATGTTGAATTAAAC+AGG - chr1_2:4783579-4783598 Msa0050790:intron 15.0%
!!! AAATTTTGCATGAATTTTTT+TGG + chr1_2:4783778-4783797 None:intergenic 15.0%
!! TATCATAAACATTTGAATTA+AGG + chr1_2:4784517-4784536 None:intergenic 15.0%
!!! AAGTTTTTGTTACTAATTTA+GGG - chr1_2:4784799-4784818 Msa0050790:intron 15.0%
!! TGAATAAAGTAAAATCAAAA+GGG + chr1_2:4784935-4784954 None:intergenic 15.0%
!! ATGAATAAAGTAAAATCAAA+AGG + chr1_2:4784936-4784955 None:intergenic 15.0%
!! TATGTTAGTTAATTTCTTTA+TGG - chr1_2:4785378-4785397 Msa0050790:intron 15.0%
!!! CAACCAAAGTTTTTTTATAT+TGG - chr1_2:4782960-4782979 Msa0050790:three_prime_UTR 20.0%
!!! AACGTGTCAATTTTTATAAA+AGG + chr1_2:4783081-4783100 None:intergenic 20.0%
!!! GAACAATATTTTGTGTAATT+GGG - chr1_2:4783857-4783876 Msa0050790:CDS 20.0%
!!! AACAATATTTTGTGTAATTG+GGG - chr1_2:4783858-4783877 Msa0050790:CDS 20.0%
!! GTATTTACTAAACAACTTAT+CGG - chr1_2:4784675-4784694 Msa0050790:CDS 20.0%
!!! TTTGATTGCGATTTTATTTT+TGG - chr1_2:4784709-4784728 Msa0050790:intron 20.0%
!!! CAAGTTTTTGTTACTAATTT+AGG - chr1_2:4784798-4784817 Msa0050790:intron 20.0%
!! TCTTAGTAGATTATTTAGAT+TGG - chr1_2:4785251-4785270 Msa0050790:intron 20.0%
!! CTTAGTAGATTATTTAGATT+GGG - chr1_2:4785252-4785271 Msa0050790:intron 20.0%
!!! TTTCTTTATGGTTTGATTTA+CGG - chr1_2:4785390-4785409 Msa0050790:intron 20.0%
!! AAATTTCTCAAGATTAGAAT+TGG - chr1_2:4785471-4785490 Msa0050790:CDS 20.0%
!! AATTTCTCAAGATTAGAATT+GGG - chr1_2:4785472-4785491 Msa0050790:CDS 20.0%
!! TTAATTACTAAAGCTAATAG+TGG - chr1_2:4785675-4785694 Msa0050790:five_prime_UTR 20.0%
!! TAATTACTAAAGCTAATAGT+GGG - chr1_2:4785676-4785695 Msa0050790:five_prime_UTR 20.0%
! TTAATTAGGAAAAGAAAGGT+GGG + chr1_2:4782544-4782563 None:intergenic 25.0%
! TTGGTTAATTAGGAAAAGAA+AGG + chr1_2:4782548-4782567 None:intergenic 25.0%
!! TTTTCCAAGAAATAAGCAAA+TGG + chr1_2:4782866-4782885 None:intergenic 25.0%
! TAATGAAATTGTTAGAGGAA+TGG + chr1_2:4782896-4782915 None:intergenic 25.0%
!! TATTTAGTTCCCGTTAAAAT+GGG + chr1_2:4783109-4783128 None:intergenic 25.0%
!! ATATTTAGTTCCCGTTAAAA+TGG + chr1_2:4783110-4783129 None:intergenic 25.0%
! CAGAGGAAGTTTAAATTAAT+CGG + chr1_2:4783332-4783351 None:intergenic 25.0%
!! GGAACAATATTTTGTGTAAT+TGG - chr1_2:4783856-4783875 Msa0050790:CDS 25.0%
! ATCAGTGATTACATTATATC+AGG - chr1_2:4783882-4783901 Msa0050790:CDS 25.0%
! TCAGTGATTACATTATATCA+GGG - chr1_2:4783883-4783902 Msa0050790:CDS 25.0%
! TAATTTAAACCTAATAGTCG+TGG + chr1_2:4784264-4784283 None:intergenic 25.0%
! TTGAATTAAGGATCGTAATT+AGG + chr1_2:4784505-4784524 None:intergenic 25.0%
! GTAACAAAAACTTGATCATA+GGG + chr1_2:4784792-4784811 None:intergenic 25.0%
! AGTAACAAAAACTTGATCAT+AGG + chr1_2:4784793-4784812 None:intergenic 25.0%
! TTGAAGCAAAAAATCATCAT+AGG - chr1_2:4784838-4784857 Msa0050790:intron 25.0%
! TAGGATATACTACTATTGAA+TGG - chr1_2:4784857-4784876 Msa0050790:intron 25.0%
! ATAATACCCCTTTATATTAC+AGG - chr1_2:4784959-4784978 Msa0050790:CDS 25.0%
! AATGATCCTGTAATATAAAG+GGG + chr1_2:4784968-4784987 None:intergenic 25.0%
! CAATGATCCTGTAATATAAA+GGG + chr1_2:4784969-4784988 None:intergenic 25.0%
! AGAGAAGAAATTATTTGCAA+AGG - chr1_2:4785041-4785060 Msa0050790:intron 25.0%
GTTAATTAGGAAAAGAAAGG+TGG + chr1_2:4782545-4782564 None:intergenic 30.0%
!! CAAACTAGTGTTGGTTAATT+AGG + chr1_2:4782558-4782577 None:intergenic 30.0%
CTAATTAACCAACACTAGTT+TGG - chr1_2:4782556-4782575 Msa0050790:three_prime_UTR 30.0%
TTTGCTAGGCTTCAATTATT+TGG - chr1_2:4782581-4782600 Msa0050790:three_prime_UTR 30.0%
! TATTCTACAATGGCTGATTT+AGG - chr1_2:4782656-4782675 Msa0050790:three_prime_UTR 30.0%
AGAAATAAGCAAATGGAAGA+AGG + chr1_2:4782859-4782878 None:intergenic 30.0%
! TCTTCCATTTGCTTATTTCT+TGG - chr1_2:4782859-4782878 Msa0050790:three_prime_UTR 30.0%
TTCCTTAGCATATTCTCTTA+AGG - chr1_2:4782984-4783003 Msa0050790:three_prime_UTR 30.0%
!! ACGTTTAGTTCCCATTTTAA+CGG - chr1_2:4783096-4783115 Msa0050790:three_prime_UTR 30.0%
! TGTTTCTTTTCCTTTTGTTC+AGG - chr1_2:4783294-4783313 Msa0050790:CDS 30.0%
AGGAAGTTTAAATTAATCGG+TGG + chr1_2:4783329-4783348 None:intergenic 30.0%
!!! TTCTTTTTTCTCGCACTTAT+TGG - chr1_2:4783356-4783375 Msa0050790:intron 30.0%
!!! TCTTTTTTCTCGCACTTATT+GGG - chr1_2:4783357-4783376 Msa0050790:intron 30.0%
TCATGCAAAATTTCATCAAC+AGG - chr1_2:4783785-4783804 Msa0050790:intron 30.0%
!! ACAACACCAATGATTGATTT+TGG - chr1_2:4783970-4783989 Msa0050790:intron 30.0%
!! CAACACCAATGATTGATTTT+GGG - chr1_2:4783971-4783990 Msa0050790:intron 30.0%
ATTGTCCCAAAATCAATCAT+TGG + chr1_2:4783979-4783998 None:intergenic 30.0%
CTTGGATGTCTTTATCTAAT+TGG - chr1_2:4784033-4784052 Msa0050790:intron 30.0%
TAATTGGACATTGTTTGTCT+TGG - chr1_2:4784049-4784068 Msa0050790:intron 30.0%
ACTTCCTATACATGTTTCTT+TGG - chr1_2:4784132-4784151 Msa0050790:CDS 30.0%
AAGTCCAAAGAAACATGTAT+AGG + chr1_2:4784139-4784158 None:intergenic 30.0%
GCAATTTCTTCTTATTGCTT+TGG - chr1_2:4784161-4784180 Msa0050790:CDS 30.0%
!!! TTTTATTAATTTGCAGGGAG+TGG - chr1_2:4784322-4784341 Msa0050790:CDS 30.0%
TTGCATTTGCAGTACAAATA+TGG - chr1_2:4784357-4784376 Msa0050790:CDS 30.0%
TAAGGATCGTAATTAGGATT+AGG + chr1_2:4784499-4784518 None:intergenic 30.0%
GTATCATTACATAAGATACG+TGG + chr1_2:4784604-4784623 None:intergenic 30.0%
AATGACCTAAAGTGAGATAA+AGG - chr1_2:4784633-4784652 Msa0050790:CDS 30.0%
ATGACCTAAAGTGAGATAAA+GGG - chr1_2:4784634-4784653 Msa0050790:CDS 30.0%
AATACCCTTTATCTCACTTT+AGG + chr1_2:4784641-4784660 None:intergenic 30.0%
CCAATGATCCTGTAATATAA+AGG + chr1_2:4784970-4784989 None:intergenic 30.0%
CCTTTATATTACAGGATCAT+TGG - chr1_2:4784967-4784986 Msa0050790:CDS 30.0%
! CATTTTCTGTTGAAGAAGAT+AGG + chr1_2:4785146-4785165 None:intergenic 30.0%
TAGTCATCATTATCATGACA+TGG - chr1_2:4785440-4785459 Msa0050790:CDS 30.0%
ATCATTATCATGACATGGAA+GGG - chr1_2:4785445-4785464 Msa0050790:CDS 30.0%
! GGTTTCAAAAGTATGGTAAT+TGG - chr1_2:4785498-4785517 Msa0050790:CDS 30.0%
CACAAATTGTGACTCTTAAA+CGG - chr1_2:4785544-4785563 Msa0050790:CDS 30.0%
ACAAATTGTGACTCTTAAAC+GGG - chr1_2:4785545-4785564 Msa0050790:CDS 30.0%
AGCAAAAACCAAACTAGTGT+TGG + chr1_2:4782567-4782586 None:intergenic 35.0%
!!! ACACTAGTTTGGTTTTTGCT+AGG - chr1_2:4782567-4782586 Msa0050790:three_prime_UTR 35.0%
! CATGCAGCTGAAATTTTTCA+GGG + chr1_2:4782715-4782734 None:intergenic 35.0%
! ACATGCAGCTGAAATTTTTC+AGG + chr1_2:4782716-4782735 None:intergenic 35.0%
TGAAAAATTTCAGCTGCATG+TGG - chr1_2:4782715-4782734 Msa0050790:three_prime_UTR 35.0%
!! AACTTGTTTTCCCTGTCTAT+AGG - chr1_2:4782813-4782832 Msa0050790:three_prime_UTR 35.0%
CAATGATGTTCCTATAGACA+GGG + chr1_2:4782826-4782845 None:intergenic 35.0%
TGCCTTAAGAGAATATGCTA+AGG + chr1_2:4782989-4783008 None:intergenic 35.0%
!! CGTTTAGTTCCCATTTTAAC+GGG - chr1_2:4783097-4783116 Msa0050790:three_prime_UTR 35.0%
! TCTTTTCCTTTTGTTCAGGA+AGG - chr1_2:4783298-4783317 Msa0050790:CDS 35.0%
TAAGTGCGAGAAAAAAGAAC+TGG + chr1_2:4783355-4783374 None:intergenic 35.0%
AACAGGATTACAGCAAATCA+AGG - chr1_2:4783596-4783615 Msa0050790:intron 35.0%
AATCAAGGTTTCTACTTGCT+TGG - chr1_2:4783611-4783630 Msa0050790:intron 35.0%
ATCAAGGTTTCTACTTGCTT+GGG - chr1_2:4783612-4783631 Msa0050790:intron 35.0%
GGACTTGGACTATATATAGT+TGG + chr1_2:4783910-4783929 None:intergenic 35.0%
TTTAAGTGACTACTTGGACT+TGG + chr1_2:4783925-4783944 None:intergenic 35.0%
CCACTATTTAAGTGACTACT+TGG + chr1_2:4783931-4783950 None:intergenic 35.0%
CCAAGTAGTCACTTAAATAG+TGG - chr1_2:4783928-4783947 Msa0050790:CDS 35.0%
GTGATGCAAAGGGAAAAAAT+TGG - chr1_2:4784007-4784026 Msa0050790:intron 35.0%
AAGGGAAAAAATTGGACACT+TGG - chr1_2:4784015-4784034 Msa0050790:intron 35.0%
!! GGTTTTTGAAAGAAATGCTC+AGG - chr1_2:4784182-4784201 Msa0050790:CDS 35.0%
! AGCTTTCACCATTTTATACG+CGG - chr1_2:4784230-4784249 Msa0050790:CDS 35.0%
CTAACTAACCGCGTATAAAA+TGG + chr1_2:4784241-4784260 None:intergenic 35.0%
! CAAATATGGTGCATTGATAG+AGG - chr1_2:4784371-4784390 Msa0050790:CDS 35.0%
GCTACAACAAAAGTTTGAAC+AGG + chr1_2:4784425-4784444 None:intergenic 35.0%
!! AACTTTTGTTGTAGCCATCA+TGG - chr1_2:4784430-4784449 Msa0050790:CDS 35.0%
TAAAGCAATAGAAGCCATGA+TGG + chr1_2:4784447-4784466 None:intergenic 35.0%
ATCATGGCTTCTATTGCTTT+AGG - chr1_2:4784446-4784465 Msa0050790:CDS 35.0%
TTTAGGAGAAGAGTTCTACT+TGG - chr1_2:4784463-4784482 Msa0050790:CDS 35.0%
TTAGGAGAAGAGTTCTACTT+GGG - chr1_2:4784464-4784483 Msa0050790:CDS 35.0%
TAATTGCTTTGCGAGTGTTT+AGG + chr1_2:4784552-4784571 None:intergenic 35.0%
TTATGTAATGATACCGCCTT+CGG - chr1_2:4784610-4784629 Msa0050790:CDS 35.0%
TCTGTTGAAGAAGATAGGAA+TGG + chr1_2:4785141-4785160 None:intergenic 35.0%
ATGGGAACATGTTGTAATAG+TGG - chr1_2:4785293-4785312 Msa0050790:intron 35.0%
!! ATAGTGGATGTCACTAAAAG+TGG - chr1_2:4785309-4785328 Msa0050790:intron 35.0%
! TAGTGGATGTCACTAAAAGT+GGG - chr1_2:4785310-4785329 Msa0050790:intron 35.0%
CATATGGGACTAATTTCACA+AGG + chr1_2:4785344-4785363 None:intergenic 35.0%
CATCATTATCATGACATGGA+AGG - chr1_2:4785444-4785463 Msa0050790:CDS 35.0%
CAAATTGTGACTCTTAAACG+GGG - chr1_2:4785546-4785565 Msa0050790:CDS 35.0%
! ATTTTTACCAGCATGCATCT+AGG + chr1_2:4785635-4785654 None:intergenic 35.0%
! CAGCTTCTTCTAAGAGAATG+TGG - chr1_2:4782681-4782700 Msa0050790:three_prime_UTR 40.0%
TTCAAGAGCTGCACTTAACA+TGG - chr1_2:4782781-4782800 Msa0050790:three_prime_UTR 40.0%
TCAAGAGCTGCACTTAACAT+GGG - chr1_2:4782782-4782801 Msa0050790:three_prime_UTR 40.0%
GCAATGATGTTCCTATAGAC+AGG + chr1_2:4782827-4782846 None:intergenic 40.0%
TATTGCTGATGCAAAGGTAG+GGG + chr1_2:4783651-4783670 None:intergenic 40.0%
GTATTGCTGATGCAAAGGTA+GGG + chr1_2:4783652-4783671 None:intergenic 40.0%
TGTATTGCTGATGCAAAGGT+AGG + chr1_2:4783653-4783672 None:intergenic 40.0%
GTTCTGTATTGCTGATGCAA+AGG + chr1_2:4783657-4783676 None:intergenic 40.0%
CCATGAGAAATGTAATGGCA+GGG + chr1_2:4783685-4783704 None:intergenic 40.0%
GACTGCCATGAGAAATGTAA+TGG + chr1_2:4783690-4783709 None:intergenic 40.0%
TTCTCATGGCAGTCATACTA+AGG - chr1_2:4783696-4783715 Msa0050790:intron 40.0%
GCAAGTGAGATTGAATCGAA+AGG - chr1_2:4783813-4783832 Msa0050790:intron 40.0%
GTGAGATTGAATCGAAAGGA+TGG - chr1_2:4783817-4783836 Msa0050790:intron 40.0%
GATGGAATTGCTAAAGTAGC+AGG - chr1_2:4783835-4783854 Msa0050790:CDS 40.0%
!!! GATTTTGGGACAATGTCACT+TGG - chr1_2:4783985-4784004 Msa0050790:intron 40.0%
!! AATGTCACTTGGTGATGCAA+AGG - chr1_2:4783996-4784015 Msa0050790:intron 40.0%
!! ATGTCACTTGGTGATGCAAA+GGG - chr1_2:4783997-4784016 Msa0050790:intron 40.0%
ATTGTTTGTCTTGGTCTGCT+TGG - chr1_2:4784058-4784077 Msa0050790:intron 40.0%
TTGAAAGAAATGCTCAGGCT+TGG - chr1_2:4784187-4784206 Msa0050790:CDS 40.0%
GTTAGTTAGCCACGACTATT+AGG - chr1_2:4784252-4784271 Msa0050790:CDS 40.0%
!! TATTAATTTGCAGGGAGTGG+TGG - chr1_2:4784325-4784344 Msa0050790:CDS 40.0%
! ATATGGTGCATTGATAGAGG+AGG - chr1_2:4784374-4784393 Msa0050790:CDS 40.0%
TGATACACTGCAACAAACAC+TGG + chr1_2:4784401-4784420 None:intergenic 40.0%
TGGACTATACTTTGTGCTGT+GGG - chr1_2:4785008-4785027 Msa0050790:intron 40.0%
CACACAAGCATGGTACTATA+AGG + chr1_2:4785199-4785218 None:intergenic 40.0%
TATCACAACACACACAAGCA+TGG + chr1_2:4785209-4785228 None:intergenic 40.0%
AGTGGATGTCACTAAAAGTG+GGG - chr1_2:4785311-4785330 Msa0050790:intron 40.0%
CTCAAGATTAGAATTGGGAG+TGG - chr1_2:4785477-4785496 Msa0050790:CDS 40.0%
TGGGAGTGGTTTCAAAAGTA+TGG - chr1_2:4785491-4785510 Msa0050790:CDS 40.0%
AGTATGGTAATTGGCAAGCA+TGG - chr1_2:4785507-4785526 Msa0050790:CDS 40.0%
! CTTAAACGGGGTCATCATTT+TGG - chr1_2:4785558-4785577 Msa0050790:CDS 40.0%
ATAATGACCTAGATGCATGC+TGG - chr1_2:4785625-4785644 Msa0050790:CDS 40.0%
AGGAAAAGAAAGGTGGGAAG+TGG + chr1_2:4782538-4782557 None:intergenic 45.0%
ACCAGCATAACCAAACTGCA+GGG + chr1_2:4782750-4782769 None:intergenic 45.0%
AACCAGCATAACCAAACTGC+AGG + chr1_2:4782751-4782770 None:intergenic 45.0%
GTGCAGCTCTTGAAACAACA+TGG + chr1_2:4782775-4782794 None:intergenic 45.0%
GTCTGTCCTTCCTGAACAAA+AGG + chr1_2:4783307-4783326 None:intergenic 45.0%
CGAGAAAAAAGAACTGGCAG+AGG + chr1_2:4783349-4783368 None:intergenic 45.0%
AGGTTTCTACTTGCTTGGGT+TGG - chr1_2:4783616-4783635 Msa0050790:intron 45.0%
CCCTGCCATTACATTTCTCA+TGG - chr1_2:4783682-4783701 Msa0050790:intron 45.0%
GCCATGAGAAATGTAATGGC+AGG + chr1_2:4783686-4783705 None:intergenic 45.0%
GCAGGATACTTCTTAAGGAC+AGG + chr1_2:4784099-4784118 None:intergenic 45.0%
GACGAGCAGGATACTTCTTA+AGG + chr1_2:4784104-4784123 None:intergenic 45.0%
! CAGGCTTGGATTTTTCACTC+TGG - chr1_2:4784201-4784220 Msa0050790:CDS 45.0%
! GCTTGGATTTTTCACTCTGG+TGG - chr1_2:4784204-4784223 Msa0050790:CDS 45.0%
ACTTTAGGTCATTCCGAAGG+CGG + chr1_2:4784626-4784645 None:intergenic 45.0%
CTCACTTTAGGTCATTCCGA+AGG + chr1_2:4784629-4784648 None:intergenic 45.0%
CTGGACTATACTTTGTGCTG+TGG - chr1_2:4785007-4785026 Msa0050790:intron 45.0%
GGACTATACTTTGTGCTGTG+GGG - chr1_2:4785009-4785028 Msa0050790:intron 45.0%
!! AACGGGGTCATCATTTTGGT+CGG - chr1_2:4785562-4785581 Msa0050790:CDS 45.0%
!!! AGTTTTTTTTTTTTTTTTAT+GGG - chr1_2:4785275-4785294 Msa0050790:intron 5.0%
GAAGTGACAGAAAGACGAGC+AGG + chr1_2:4784117-4784136 None:intergenic 50.0%
GGAGAAGAGTTCTACTTGGG+CGG - chr1_2:4784467-4784486 Msa0050790:CDS 50.0%
GAGAAGAGTTCTACTTGGGC+GGG - chr1_2:4784468-4784487 Msa0050790:CDS 50.0%
!! GGTGCAGTGTTGATAGTAGC+TGG - chr1_2:4784988-4785007 Msa0050790:intron 50.0%
TGATGCTTTAGCGTGGCTTG+CGG + chr1_2:4785109-4785128 None:intergenic 50.0%
GAGTGAGTGATGCTTTAGCG+TGG + chr1_2:4785116-4785135 None:intergenic 50.0%
TCAGCTGCATGTGGCCATGT+TGG - chr1_2:4782724-4782743 Msa0050790:three_prime_UTR 55.0%
ACCAAACTGCAGGGCCAACA+TGG + chr1_2:4782741-4782760 None:intergenic 55.0%
GCCCTGCAGTTTGGTTATGC+TGG - chr1_2:4782746-4782765 Msa0050790:three_prime_UTR 55.0%
! GATGCTTTAGCGTGGCTTGC+GGG + chr1_2:4785108-4785127 None:intergenic 55.0%
GCCATGTTGGCCCTGCAGTT+TGG - chr1_2:4782737-4782756 Msa0050790:three_prime_UTR 60.0%
TTGCAGGGAGTGGTGGCATC+TGG - chr1_2:4784332-4784351 Msa0050790:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 4782534 4785782 4782534 ID=Msa0050790;Name=Msa0050790
chr1_2 mRNA 4782534 4785782 4782534 ID=Msa0050790-mRNA-1;Parent=Msa0050790;Name=Msa0050790-mRNA-1;_AED=0.05;_eAED=0.05;_QI=131|1|1|1|1|1|6|612|395
chr1_2 exon 4782534 4783335 4782534 ID=Msa0050790-mRNA-1:exon:1290;Parent=Msa0050790-mRNA-1
chr1_2 exon 4783827 4783978 4783827 ID=Msa0050790-mRNA-1:exon:1289;Parent=Msa0050790-mRNA-1
chr1_2 exon 4784065 4784509 4784065 ID=Msa0050790-mRNA-1:exon:1288;Parent=Msa0050790-mRNA-1
chr1_2 exon 4784599 4784715 4784599 ID=Msa0050790-mRNA-1:exon:1287;Parent=Msa0050790-mRNA-1
chr1_2 exon 4784938 4785000 4784938 ID=Msa0050790-mRNA-1:exon:1286;Parent=Msa0050790-mRNA-1
chr1_2 exon 4785431 4785782 4785431 ID=Msa0050790-mRNA-1:exon:1285;Parent=Msa0050790-mRNA-1
chr1_2 five_prime_UTR 4785652 4785782 4785652 ID=Msa0050790-mRNA-1:five_prime_utr;Parent=Msa0050790-mRNA-1
chr1_2 CDS 4785431 4785651 4785431 ID=Msa0050790-mRNA-1:cds;Parent=Msa0050790-mRNA-1
chr1_2 CDS 4784938 4785000 4784938 ID=Msa0050790-mRNA-1:cds;Parent=Msa0050790-mRNA-1
chr1_2 CDS 4784599 4784715 4784599 ID=Msa0050790-mRNA-1:cds;Parent=Msa0050790-mRNA-1
chr1_2 CDS 4784065 4784509 4784065 ID=Msa0050790-mRNA-1:cds;Parent=Msa0050790-mRNA-1
chr1_2 CDS 4783827 4783978 4783827 ID=Msa0050790-mRNA-1:cds;Parent=Msa0050790-mRNA-1
chr1_2 CDS 4783146 4783335 4783146 ID=Msa0050790-mRNA-1:cds;Parent=Msa0050790-mRNA-1
chr1_2 three_prime_UTR 4782534 4783145 4782534 ID=Msa0050790-mRNA-1:three_prime_utr;Parent=Msa0050790-mRNA-1
Gene Sequence

>Msa0050790

ATGGCTGATTTAGGTTCAGCTTCTTCTAAGAGAATGTGGTGTTCTATCCCTGAAAAATTTCAGCTGCATGTGGCCATGTTGGCCCTGCAGTTTGGTTATGCTGGTTTCCATGTTGTTTCAAGAGCTGCACTTAACATGGGAGTTAGCAAACTTGTTTTCCCTGTCTATAGGAACATCATTGCTTTGCTTCTCCTTCTTCCATTTGCTTATTTCTTGGAAAAGAAGGACAGACCACCGATTAATTTAAACTTCCTCTGCCAGTTCTTTTTTCTCGCACTTATTGGGATTACAGCAAATCAAGGTTTCTACTTGCTTGGGTTGGATAACACATCCCCTACCTTTGCATCAGCAATACAGAACTCTGTCCCTGCCATTACATTTCTCATGGCAGTCATACTAAGGATAGAGCAAGTGAGATTGAATCGAAAGGATGGAATTGCTAAAGTAGCAGGAACAATATTTTGTGTAATTGGGGCATCAGTGATTACATTATATCAGGGACCAACTATATATAGTCCAAGTCCAAGTAGTCACTTAAATAGTGGCATAACAGAAGTAACAACAACAACACCAATGATTGATTTTGGGACAATGTCACTTGGTGATGCAAAGGGAAAAAATTGGACACTTGGATGTCTTTATCTAATTGGACATTGTTTGTCTTGGTCTGCTTGGCTTGTGTTTCAAGCACCTGTCCTTAAGAAGTATCCTGCTCGTCTTTCTGTCACTTCCTATACATGTTTCTTTGGACTTTTGCAATTTCTTCTTATTGCTTTGGTTTTTGAAAGAAATGCTCAGGCTTGGATTTTTCACTCTGGTGGTGAAGCTTTCACCATTTTATACGCGGGAGTGGTGGCATCTGGAATTGCATTTGCAGTACAAATATGGTGCATTGATAGAGGAGGTCCAGTGTTTGTTGCAGTGTATCAACCTGTTCAAACTTTTGTTGTAGCCATCATGGCTTCTATTGCTTTAGGAGAAGAGTTCTACTTGGGCGGGATCATTGGTGCAGTGTTGATAGTAGCTGGACTATACTTTGTGCTGTGGGGTAAAAGTGAAGAGAAGAAATTATTTGCAAAGGAACAGCTTGCAATTGCATCAACAGAACATAGCATCATTAGACCCGCAAGCCACGCTAAAGCATCACTCACTCAACCATTCCTATCTTCTTCAACAGAAAATGTTTGA

Protein sequence

>Msa0050790

MADLGSASSKRMWCSIPEKFQLHVAMLALQFGYAGFHVVSRAALNMGVSKLVFPVYRNIIALLLLLPFAYFLEKKDRPPINLNFLCQFFFLALIGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAVILRIEQVRLNRKDGIAKVAGTIFCVIGASVITLYQGPTIYSPSPSSHLNSGITEVTTTTPMIDFGTMSLGDAKGKNWTLGCLYLIGHCLSWSAWLVFQAPVLKKYPARLSVTSYTCFFGLLQFLLIALVFERNAQAWIFHSGGEAFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVAIMASIALGEEFYLGGIIGAVLIVAGLYFVLWGKSEEKKLFAKEQLAIASTEHSIIRPASHAKASLTQPFLSSSTENV*