Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411790 | sp|Q9FZ33|AXR4_ARATH | 52.846 | 492 | 205 | 10 | 1 | 489 | 1 | 468 | 7.14e-159 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411790 | G7KYN0 | 92.972 | 498 | 27 | 3 | 1 | 494 | 1 | 494 | 0.0 | 866 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000560 | Msa1411790 | 0.838521 | 2.736925e-57 | -8.615850e-47 |
| Msa0003080 | Msa1411790 | 0.827719 | 1.339716e-54 | -8.615850e-47 |
| Msa0014770 | Msa1411790 | 0.813216 | 2.863063e-51 | -8.615850e-47 |
| Msa0025160 | Msa1411790 | 0.835964 | 1.234555e-56 | -8.615850e-47 |
| Msa0050660 | Msa1411790 | 0.845659 | 3.538340e-59 | -8.615850e-47 |
| Msa0050700 | Msa1411790 | 0.845592 | 3.689743e-59 | -8.615850e-47 |
| Msa0050790 | Msa1411790 | 0.841340 | 5.043398e-58 | -8.615850e-47 |
| Msa0072520 | Msa1411790 | 0.826541 | 2.563777e-54 | -8.615850e-47 |
| Msa0078500 | Msa1411790 | 0.824486 | 7.865185e-54 | -8.615850e-47 |
| Msa0087450 | Msa1411790 | 0.806948 | 6.417614e-50 | -8.615850e-47 |
| Msa0089950 | Msa1411790 | 0.803445 | 3.473741e-49 | -8.615850e-47 |
| Msa1393780 | Msa1411790 | 0.862093 | 6.466751e-64 | -8.615850e-47 |
| Msa1410160 | Msa1411790 | 0.813585 | 2.376041e-51 | -8.615850e-47 |
| Msa1411790 | Msa1431480 | 0.978942 | 6.823301e-147 | -8.615850e-47 |
| Msa1411790 | Msa1440630 | 0.840622 | 7.783903e-58 | -8.615850e-47 |
| Msa1411790 | Msa1441570 | 0.819545 | 1.097927e-52 | -8.615850e-47 |
| Msa0607800 | Msa1411790 | 0.801996 | 6.918396e-49 | -8.615850e-47 |
| Msa0644410 | Msa1411790 | 0.808548 | 2.933966e-50 | -8.615850e-47 |
| Msa0652650 | Msa1411790 | 0.831590 | 1.531469e-55 | -8.615850e-47 |
| Msa0675330 | Msa1411790 | 0.802671 | 5.023056e-49 | -8.615850e-47 |
| Msa0684220 | Msa1411790 | 0.807989 | 3.860730e-50 | -8.615850e-47 |
| Msa0687090 | Msa1411790 | 0.831900 | 1.284475e-55 | -8.615850e-47 |
| Msa0692790 | Msa1411790 | 0.800930 | 1.143698e-48 | -8.615850e-47 |
| Msa0756490 | Msa1411790 | 0.801406 | 9.141163e-49 | -8.615850e-47 |
| Msa0126210 | Msa1411790 | 0.836411 | 9.509384e-57 | -8.615850e-47 |
| Msa0137880 | Msa1411790 | 0.810506 | 1.114394e-50 | -8.615850e-47 |
| Msa0146650 | Msa1411790 | 0.836674 | 8.146376e-57 | -8.615850e-47 |
| Msa0161930 | Msa1411790 | 0.806821 | 6.827085e-50 | -8.615850e-47 |
| Msa0176060 | Msa1411790 | 0.805180 | 1.511610e-49 | -8.615850e-47 |
| Msa0213610 | Msa1411790 | 0.806068 | 9.842380e-50 | -8.615850e-47 |
| Msa1262590 | Msa1411790 | 0.841495 | 4.591547e-58 | -8.615850e-47 |
| Msa1315130 | Msa1411790 | 0.827459 | 1.546034e-54 | -8.615850e-47 |
| Msa1315160 | Msa1411790 | 0.835038 | 2.117720e-56 | -8.615850e-47 |
| Msa0367520 | Msa1411790 | 0.809842 | 1.549625e-50 | -8.615850e-47 |
| Msa0380670 | Msa1411790 | 0.805678 | 1.188511e-49 | -8.615850e-47 |
| Msa0426530 | Msa1411790 | 0.837218 | 5.918644e-57 | -8.615850e-47 |
| Msa0430300 | Msa1411790 | 0.815546 | 8.744966e-52 | -8.615850e-47 |
| Msa0440430 | Msa1411790 | 0.814600 | 1.418303e-51 | -8.615850e-47 |
| Msa0472950 | Msa1411790 | 0.815434 | 9.262841e-52 | -8.615850e-47 |
| Msa1021590 | Msa1411790 | 0.811594 | 6.475910e-51 | -8.615850e-47 |
| Msa1034600 | Msa1411790 | 0.802469 | 5.527410e-49 | -8.615850e-47 |
| Msa1039220 | Msa1411790 | 0.949832 | 5.713698e-108 | -8.615850e-47 |
| Msa1042160 | Msa1411790 | 0.849185 | 3.802738e-60 | -8.615850e-47 |
| Msa1042190 | Msa1411790 | 0.849151 | 3.886505e-60 | -8.615850e-47 |
| Msa1044680 | Msa1411790 | 0.804742 | 1.866613e-49 | -8.615850e-47 |
| Msa1072960 | Msa1411790 | 0.811469 | 6.891932e-51 | -8.615850e-47 |
| Msa1074600 | Msa1411790 | 0.802486 | 5.483876e-49 | -8.615850e-47 |
| Msa1080000 | Msa1411790 | 0.819260 | 1.275279e-52 | -8.615850e-47 |
| Msa1083590 | Msa1411790 | 0.852705 | 3.873261e-61 | -8.615850e-47 |
| Msa1104110 | Msa1411790 | 0.832150 | 1.114144e-55 | -8.615850e-47 |
| Msa1105640 | Msa1411790 | 0.816518 | 5.307136e-52 | -8.615850e-47 |
| Msa0284800 | Msa1411790 | 0.811622 | 6.385889e-51 | -8.615850e-47 |
| Msa0293040 | Msa1411790 | 0.805409 | 1.353612e-49 | -8.615850e-47 |
| Msa0307280 | Msa1411790 | 0.808658 | 2.779233e-50 | -8.615850e-47 |
| Msa0330520 | Msa1411790 | 0.822553 | 2.227909e-53 | -8.615850e-47 |
| Msa0331110 | Msa1411790 | 0.806738 | 7.109806e-50 | -8.615850e-47 |
| Msa1123210 | Msa1411790 | 0.841681 | 4.099675e-58 | -8.615850e-47 |
| Msa1130280 | Msa1411790 | 0.835131 | 2.006161e-56 | -8.615850e-47 |
| Msa1147700 | Msa1411790 | 0.809393 | 1.935163e-50 | -8.615850e-47 |
| Msa1160910 | Msa1411790 | 0.817502 | 3.189637e-52 | -8.615850e-47 |
| Msa1161970 | Msa1411790 | 0.814838 | 1.256146e-51 | -8.615850e-47 |
| Msa1166190 | Msa1411790 | 0.810463 | 1.138679e-50 | -8.615850e-47 |
| Msa1167470 | Msa1411790 | 0.856514 | 3.056698e-62 | -8.615850e-47 |
| Msa1216110 | Msa1411790 | 0.817163 | 3.802574e-52 | -8.615850e-47 |
| Msa1217050 | Msa1411790 | 0.822172 | 2.730350e-53 | -8.615850e-47 |
| Msa0484570 | Msa1411790 | 0.805910 | 1.062467e-49 | -8.615850e-47 |
| Msa0517250 | Msa1411790 | 0.859698 | 3.455261e-63 | -8.615850e-47 |
| Msa0541300 | Msa1411790 | 0.807928 | 3.977863e-50 | -8.615850e-47 |
| Msa0541310 | Msa1411790 | 0.802535 | 5.358238e-49 | -8.615850e-47 |
| Msa0597270 | Msa1411790 | 0.813503 | 2.476227e-51 | -8.615850e-47 |
| Msa0945260 | Msa1411790 | 0.815347 | 9.685559e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411790 | MtrunA17_Chr7g0272801 | 92.972 | 498 | 27 | 3 | 1 | 494 | 1 | 494 | 0.0 | 866 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411790 | AT1G54990.1 | 52.846 | 492 | 205 | 10 | 1 | 489 | 1 | 468 | 7.26e-160 | 462 |
Find 153 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAAACCCATTATCTTTC+TGG | 0.188044 | tig0023841:-62839 | Msa1411790:CDS |
| GCAAAGTTTGTTACTCATTC+TGG | 0.188700 | tig0023841:-61781 | Msa1411790:CDS |
| GAGGGGTTGGATGGGATCTT+TGG | 0.196734 | tig0023841:-62450 | Msa1411790:CDS |
| GTTGTTGGTTGGGGTGAATT+TGG | 0.200935 | tig0023841:+62670 | None:intergenic |
| GGTTTCTGAGAATTTAAATT+TGG | 0.212168 | tig0023841:-62178 | Msa1411790:CDS |
| GTGAATAAACCTATTGATTT+AGG | 0.213075 | tig0023841:-62306 | Msa1411790:CDS |
| TGAAGAGATTGGAAAAGTTT+TGG | 0.215909 | tig0023841:-62280 | Msa1411790:CDS |
| AGGTGGATGGGTTGTTGGTT+GGG | 0.231660 | tig0023841:+62660 | None:intergenic |
| CTTTAGGGTTTACTGCAAAT+TGG | 0.234894 | tig0023841:-62200 | Msa1411790:CDS |
| TGTTGTTGGCCTTTGGGTTT+TGG | 0.239927 | tig0023841:+62878 | None:intergenic |
| TGTTATTGCCATCGACCTTC+CGG | 0.265741 | tig0023841:-62511 | Msa1411790:CDS |
| AGGGGTTGGATGGGATCTTT+GGG | 0.268507 | tig0023841:-62449 | Msa1411790:CDS |
| CATCCATGAAGCTGGTTATA+TGG | 0.272529 | tig0023841:-60108 | Msa1411790:CDS |
| TTTGATCAAATTGTTGAAAC+TGG | 0.289054 | tig0023841:-62375 | Msa1411790:CDS |
| GCCCGTGCCACCTTCAAATT+CGG | 0.300130 | tig0023841:-62130 | Msa1411790:CDS |
| GTTGTGTTGTTGTTGGCCTT+TGG | 0.306265 | tig0023841:+62871 | None:intergenic |
| TGTTGTTGTTGTTGATGATC+TGG | 0.318059 | tig0023841:+62957 | None:intergenic |
| AGGATTAGCTCCTGTTCATT+TGG | 0.321069 | tig0023841:-62238 | Msa1411790:CDS |
| GGGTTGCTGGTGCTCTTCCT+TGG | 0.322738 | tig0023841:-61804 | Msa1411790:CDS |
| AAATATCTTAATTATTTAGA+TGG | 0.323157 | tig0023841:-59803 | Msa1411790:three_prime_UTR |
| GGAGAGGTTATTGCTACATT+AGG | 0.331260 | tig0023841:-62258 | Msa1411790:CDS |
| AAGTAGAACCAGAAAGATAA+TGG | 0.337907 | tig0023841:+62831 | None:intergenic |
| GAAACTGTTCTCATTCTTCA+TGG | 0.338779 | tig0023841:-62597 | Msa1411790:CDS |
| GGTGGATGGGTTGTTGGTTG+GGG | 0.340133 | tig0023841:+62661 | None:intergenic |
| TTCTGTATGTGGTCTGGGAT+AGG | 0.340544 | tig0023841:+60203 | None:intergenic |
| AAGAAGTGAAGAGGAAGAAA+AGG | 0.344078 | tig0023841:+62784 | None:intergenic |
| TTGTGTTGTTGTTGGCCTTT+GGG | 0.345222 | tig0023841:+62872 | None:intergenic |
| GGAACATCCAAAACCCAAAT+AGG | 0.346484 | tig0023841:+62099 | None:intergenic |
| GTTATTGCCATCGACCTTCC+GGG | 0.348441 | tig0023841:-62510 | Msa1411790:CDS |
| TCTGTATGTGGTCTGGGATA+GGG | 0.353068 | tig0023841:+60204 | None:intergenic |
| CATCCATATAACCAGCTTCA+TGG | 0.356193 | tig0023841:+60105 | None:intergenic |
| AACATCTTCTGTATGTGGTC+TGG | 0.357775 | tig0023841:+60197 | None:intergenic |
| TTGTGTTTGGATTTAGGAAC+AGG | 0.359522 | tig0023841:-59861 | Msa1411790:three_prime_UTR |
| CATAGGGTGCTGTTGAAGTC+TGG | 0.362685 | tig0023841:-61979 | Msa1411790:CDS |
| TCTTCAGGACCTAAATCAAT+AGG | 0.364136 | tig0023841:+62297 | None:intergenic |
| GGTTGCTGGTGCTCTTCCTT+GGG | 0.365766 | tig0023841:-61803 | Msa1411790:CDS |
| GATCACTTTCACCAATCATT+TGG | 0.367733 | tig0023841:+60062 | None:intergenic |
| AAGTGATCACTGAATATTAC+TGG | 0.373728 | tig0023841:-60047 | Msa1411790:three_prime_UTR |
| TAGCTTTGATTTAGCTGAAT+GGG | 0.376044 | tig0023841:-61911 | Msa1411790:CDS |
| TACTCATTCTGGAGGCCGTT+GGG | 0.379063 | tig0023841:-61770 | Msa1411790:CDS |
| TTATCTGAAAATCCGCTTCC+CGG | 0.379993 | tig0023841:+62492 | None:intergenic |
| TTTAGGGTTTACTGCAAATT+GGG | 0.387005 | tig0023841:-62199 | Msa1411790:CDS |
| TGAAGAGGTGGATGGGTTGT+TGG | 0.390818 | tig0023841:+62655 | None:intergenic |
| GAGGTGGATGGGTTGTTGGT+TGG | 0.397941 | tig0023841:+62659 | None:intergenic |
| AGGAAAGCGGTTGTGGCTAT+TGG | 0.398736 | tig0023841:-61949 | Msa1411790:CDS |
| CTGTATGTGGTCTGGGATAG+GGG | 0.404408 | tig0023841:+60205 | None:intergenic |
| GAGAACAGTTTCTGTAGGAT+TGG | 0.410614 | tig0023841:+62608 | None:intergenic |
| GGTTGGATGGGATCTTTGGG+AGG | 0.414023 | tig0023841:-62446 | Msa1411790:CDS |
| TTCTAAGAGAATTGGTGGTT+TGG | 0.414206 | tig0023841:-62013 | Msa1411790:CDS |
| CCCGTGCCACCTTCAAATTC+GGG | 0.415386 | tig0023841:-62129 | Msa1411790:CDS |
| AATGGAGCCGCGAAGGGAAT+CGG | 0.417456 | tig0023841:-61825 | Msa1411790:CDS |
| TGGGAATGGTGGGGTCCAGC+TGG | 0.419291 | tig0023841:+62628 | None:intergenic |
| TGAGGTGGTTGTGTTGTTGT+TGG | 0.425120 | tig0023841:+62864 | None:intergenic |
| TATAGTGAGATTCAAGAAAA+GGG | 0.425324 | tig0023841:-62411 | Msa1411790:CDS |
| TTATAGTGAGATTCAAGAAA+AGG | 0.427517 | tig0023841:-62412 | Msa1411790:CDS |
| ACATCTTCTGTATGTGGTCT+GGG | 0.430738 | tig0023841:+60198 | None:intergenic |
| GATTTAGGTCCTGAAGAGAT+TGG | 0.432271 | tig0023841:-62291 | Msa1411790:CDS |
| AACTGGACAAATTCCTTATG+AGG | 0.434249 | tig0023841:-62358 | Msa1411790:CDS |
| AGAACAGTTTCTGTAGGATT+GGG | 0.436036 | tig0023841:+62609 | None:intergenic |
| CAGCAACCCGATTCCCTTCG+CGG | 0.436325 | tig0023841:+61818 | None:intergenic |
| TACTGTTCTAAGAGAATTGG+TGG | 0.443206 | tig0023841:-62018 | Msa1411790:CDS |
| GTTTCAGTTGAGGGGTTGGA+TGG | 0.444135 | tig0023841:-62459 | Msa1411790:CDS |
| GACTTTGATTGTGCGGCCAT+TGG | 0.445718 | tig0023841:+62692 | None:intergenic |
| TCTGTAGGATTGGGAATGGT+GGG | 0.446740 | tig0023841:+62618 | None:intergenic |
| TTCTGTAGGATTGGGAATGG+TGG | 0.450396 | tig0023841:+62617 | None:intergenic |
| TCAGTAGAAGTTTCAGTTGA+GGG | 0.452271 | tig0023841:-62468 | Msa1411790:CDS |
| AATGGGTTTGTTTGTTGAGG+TGG | 0.455092 | tig0023841:+62849 | None:intergenic |
| AGAAGTTTCAGTTGAGGGGT+TGG | 0.455575 | tig0023841:-62463 | Msa1411790:CDS |
| TTACTCATTCTGGAGGCCGT+TGG | 0.460405 | tig0023841:-61771 | Msa1411790:CDS |
| CTAGCTAGAACTTCCTCATA+AGG | 0.463412 | tig0023841:+62345 | None:intergenic |
| TCATGCAAAACCAAATGAAC+AGG | 0.463756 | tig0023841:+62228 | None:intergenic |
| GCTGGTTATATGGATGCATA+TGG | 0.467345 | tig0023841:-60098 | Msa1411790:CDS |
| ATAGGGTGCTGTTGAAGTCT+GGG | 0.467959 | tig0023841:-61978 | Msa1411790:CDS |
| ATGGAGCCGCGAAGGGAATC+GGG | 0.469235 | tig0023841:-61824 | Msa1411790:CDS |
| CTAGCTTTGATTTAGCTGAA+TGG | 0.469276 | tig0023841:-61912 | Msa1411790:CDS |
| GCTGAATGGGGTGGTTCTGA+TGG | 0.473143 | tig0023841:-61898 | Msa1411790:CDS |
| GGATGGAAGGAAAGCGGTTG+TGG | 0.475697 | tig0023841:-61956 | Msa1411790:CDS |
| ATATGCCAATGCAACTGATC+TGG | 0.483350 | tig0023841:-61867 | Msa1411790:CDS |
| AGAAGTGAAGAGGAAGAAAA+GGG | 0.485080 | tig0023841:+62785 | None:intergenic |
| GCCATCGACCTTCCGGGAAG+CGG | 0.485321 | tig0023841:-62504 | Msa1411790:CDS |
| GATAATGGGTTTGTTTGTTG+AGG | 0.488583 | tig0023841:+62846 | None:intergenic |
| CCACCTCTTCACCTTCCAGC+TGG | 0.496092 | tig0023841:-62643 | Msa1411790:CDS |
| AGTAGAACCAGAAAGATAAT+GGG | 0.498545 | tig0023841:+62832 | None:intergenic |
| CCCGAATTTGAAGGTGGCAC+GGG | 0.505835 | tig0023841:+62129 | None:intergenic |
| CTGAAAATCCGCTTCCCGGA+AGG | 0.507613 | tig0023841:+62496 | None:intergenic |
| CATCAAACATCTTCTGTATG+TGG | 0.517131 | tig0023841:+60192 | None:intergenic |
| CCCTGTGCATAATTGTTACA+AGG | 0.517495 | tig0023841:+59914 | None:intergenic |
| GGAAAAGCACCCGAATTTGA+AGG | 0.517603 | tig0023841:+62120 | None:intergenic |
| GATCAAAGAATTAGAAAGAA+GGG | 0.518896 | tig0023841:+63111 | None:intergenic |
| TGTATGTGGTCTGGGATAGG+GGG | 0.520587 | tig0023841:+60206 | None:intergenic |
| GATGCATATGGGCTTGGTCA+TGG | 0.526973 | tig0023841:-60086 | Msa1411790:CDS |
| AATGGTGGGGTCCAGCTGGA+AGG | 0.527781 | tig0023841:+62632 | None:intergenic |
| AACTGATCTGGTCTAGTGAT+TGG | 0.528070 | tig0023841:-61855 | Msa1411790:CDS |
| CTAGTGATTGGTCTGTAGAA+TGG | 0.528994 | tig0023841:-61843 | Msa1411790:CDS |
| TTGGTCATGGACCAAATGAT+TGG | 0.531729 | tig0023841:-60073 | Msa1411790:CDS |
| TTTGGATGCTGATGCACATA+GGG | 0.533671 | tig0023841:-61995 | Msa1411790:CDS |
| ACCTTGTAACAATTATGCAC+AGG | 0.534279 | tig0023841:-59915 | Msa1411790:three_prime_UTR |
| TTTCAGTTGAGGGGTTGGAT+GGG | 0.534699 | tig0023841:-62458 | Msa1411790:CDS |
| AAAGAGATGAAGAAGTGAAG+AGG | 0.535653 | tig0023841:+62775 | None:intergenic |
| TATATGGATGCATATGGGCT+TGG | 0.541175 | tig0023841:-60092 | Msa1411790:CDS |
| GGATCAAAGAATTAGAAAGA+AGG | 0.541760 | tig0023841:+63110 | None:intergenic |
| TCCGCTTCCCGGAAGGTCGA+TGG | 0.542399 | tig0023841:+62503 | None:intergenic |
| GGCCATTGGAGTAGTGTTGA+CGG | 0.544197 | tig0023841:+62706 | None:intergenic |
| AGCTTTGATTTAGCTGAATG+GGG | 0.545831 | tig0023841:-61910 | Msa1411790:CDS |
| CTTCTTCCTCACCACAACAA+TGG | 0.546383 | tig0023841:-62752 | Msa1411790:CDS |
| GATGAAGCTAAAAGTGATGA+TGG | 0.551240 | tig0023841:-60173 | Msa1411790:CDS |
| TAGTGTTGACGGAGAGTGGT+GGG | 0.551242 | tig0023841:+62717 | None:intergenic |
| TTAATCACACTCTCATCTCA+TGG | 0.552844 | tig0023841:-63003 | Msa1411790:exon |
| CTAGACCAGATCAGTTGCAT+TGG | 0.554156 | tig0023841:+61862 | None:intergenic |
| GTTTGGATGCTGATGCACAT+AGG | 0.560246 | tig0023841:-61996 | Msa1411790:CDS |
| CTGGAAGGTGAAGAGGTGGA+TGG | 0.563184 | tig0023841:+62647 | None:intergenic |
| CTGTAGAATGGAGCCGCGAA+GGG | 0.564253 | tig0023841:-61831 | Msa1411790:CDS |
| GAAGCTCACATCCATGAAGC+TGG | 0.565704 | tig0023841:-60116 | Msa1411790:CDS |
| GGTCCAGCTGGAAGGTGAAG+AGG | 0.567156 | tig0023841:+62640 | None:intergenic |
| AGTTTCTGTAGGATTGGGAA+TGG | 0.569909 | tig0023841:+62614 | None:intergenic |
| ACCCGAATTTGAAGGTGGCA+CGG | 0.569982 | tig0023841:+62128 | None:intergenic |
| ATCAGTAGAAGTTTCAGTTG+AGG | 0.570619 | tig0023841:-62469 | Msa1411790:CDS |
| CAGTAGAAGTTTCAGTTGAG+GGG | 0.576596 | tig0023841:-62467 | Msa1411790:CDS |
| AAAACTACCTCTCTAATCAA+AGG | 0.579564 | tig0023841:+62078 | None:intergenic |
| GACAGCATCATTGCATAGCA+TGG | 0.582426 | tig0023841:+63134 | None:intergenic |
| GGATGTTCCTTTGATTAGAG+AGG | 0.589634 | tig0023841:-62085 | Msa1411790:CDS |
| CTCCGTCAACACTACTCCAA+TGG | 0.591347 | tig0023841:-62708 | Msa1411790:CDS |
| GTGCTGTTGAAGTCTGGGGA+TGG | 0.594356 | tig0023841:-61973 | Msa1411790:CDS |
| AGTGATGATGGTCATGATCA+TGG | 0.595237 | tig0023841:-60161 | Msa1411790:CDS |
| TTTGATTTAGCTGAATGGGG+TGG | 0.595613 | tig0023841:-61907 | Msa1411790:CDS |
| CTGGTTATATGGATGCATAT+GGG | 0.596389 | tig0023841:-60097 | Msa1411790:CDS |
| AGAATGAGAACAGTTTCTGT+AGG | 0.599638 | tig0023841:+62603 | None:intergenic |
| AAGTTTGTTACTCATTCTGG+AGG | 0.604446 | tig0023841:-61778 | Msa1411790:CDS |
| ATCAAAGAATTAGAAAGAAG+GGG | 0.605039 | tig0023841:+63112 | None:intergenic |
| TGGAAGGTGAAGAGGTGGAT+GGG | 0.608088 | tig0023841:+62648 | None:intergenic |
| TTCTAGCTAGAATGTCAAAG+AGG | 0.614198 | tig0023841:-62332 | Msa1411790:CDS |
| CCAGCTGGAAGGTGAAGAGG+TGG | 0.614774 | tig0023841:+62643 | None:intergenic |
| CCTTGTAACAATTATGCACA+GGG | 0.617284 | tig0023841:-59914 | Msa1411790:three_prime_UTR |
| TGTTGAAGTCTGGGGATGGA+AGG | 0.618688 | tig0023841:-61969 | Msa1411790:CDS |
| CTGTAGGATTGGGAATGGTG+GGG | 0.619120 | tig0023841:+62619 | None:intergenic |
| GAATTTGGACTTTGATTGTG+CGG | 0.619782 | tig0023841:+62685 | None:intergenic |
| GGTCACGGACATGATCGCCT+TGG | 0.628231 | tig0023841:-60140 | Msa1411790:CDS |
| GTCTGGGGATGGAAGGAAAG+CGG | 0.630612 | tig0023841:-61962 | Msa1411790:CDS |
| TGAGTAACAAACTTTGCCCA+AGG | 0.635006 | tig0023841:+61787 | None:intergenic |
| TTGTGCACACCTGAGCCCAA+CGG | 0.637219 | tig0023841:+61755 | None:intergenic |
| AAACCAAATCCAAAACCCAA+AGG | 0.638219 | tig0023841:-62887 | Msa1411790:CDS |
| GGAGTAGTGTTGACGGAGAG+TGG | 0.642866 | tig0023841:+62713 | None:intergenic |
| GTAGTGTTGACGGAGAGTGG+TGG | 0.662724 | tig0023841:+62716 | None:intergenic |
| TAAAATAACATACAACACGT+CGG | 0.676180 | tig0023841:+59986 | None:intergenic |
| GGAGAGTGGTGGGTAAAGTG+AGG | 0.677652 | tig0023841:+62727 | None:intergenic |
| ATTCAATCTCTTAGCACACA+AGG | 0.684118 | tig0023841:-62540 | Msa1411790:CDS |
| AAAGCACCCGAATTTGAAGG+TGG | 0.688232 | tig0023841:+62123 | None:intergenic |
| CGATAAGAATATGAACTGAG+AGG | 0.689494 | tig0023841:+62570 | None:intergenic |
| GAGGAACCATTGTTGTGGTG+AGG | 0.690028 | tig0023841:+62746 | None:intergenic |
| TAGGGTGCTGTTGAAGTCTG+GGG | 0.693836 | tig0023841:-61977 | Msa1411790:CDS |
| CATGGATGTGAGCTTCACCA+AGG | 0.699492 | tig0023841:+60123 | None:intergenic |
| GATGGTCATGATCATGGTCA+CGG | 0.699879 | tig0023841:-60155 | Msa1411790:CDS |
| AAAGTGAGGAACCATTGTTG+TGG | 0.772546 | tig0023841:+62741 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATCTTAATTATTTAGA+TGG | - | tig0023841:63041-63060 | Msa1411790:five_prime_UTR | 10.0% |
| !!! | AAATTTTAGTAAAAAAGCTA+GGG | + | tig0023841:59765-59784 | None:intergenic | 15.0% |
| !!! | GAAATTTTAGTAAAAAAGCT+AGG | + | tig0023841:59766-59785 | None:intergenic | 20.0% |
| !! | AACAAATGTGTTTCTTTAAT+GGG | + | tig0023841:61513-61532 | None:intergenic | 20.0% |
| !!! | AAAGTTTTAGCAATAGAAAA+GGG | + | tig0023841:61641-61660 | None:intergenic | 20.0% |
| !!! | AAAGTTTTAGCAATAGAAAA+GGG | + | tig0023841:61641-61660 | None:intergenic | 20.0% |
| !!! | ATTAGTTTTCTCTTATACTT+TGG | - | tig0023841:61941-61960 | Msa1411790:CDS | 20.0% |
| !!! | TTAGTTTTCTCTTATACTTT+GGG | - | tig0023841:61942-61961 | Msa1411790:CDS | 20.0% |
| !! | AATATTAGATACAGAATGAA+AGG | - | tig0023841:62187-62206 | Msa1411790:CDS | 20.0% |
| !! | TTATCAATGAATCAACTAAT+GGG | + | tig0023841:62241-62260 | None:intergenic | 20.0% |
| !! | TTTATCAATGAATCAACTAA+TGG | + | tig0023841:62242-62261 | None:intergenic | 20.0% |
| !! | TTGATTCATTGATAAATTCA+AGG | - | tig0023841:62246-62265 | Msa1411790:CDS | 20.0% |
| !! | ATGTTCAAATATGATATTTG+AGG | - | tig0023841:62306-62325 | Msa1411790:CDS | 20.0% |
| !!! | ATTTTTTTTCATATCCCATT+CGG | - | tig0023841:62424-62443 | Msa1411790:CDS | 20.0% |
| !! | ATATACACAAATAAACGATT+CGG | + | tig0023841:62473-62492 | None:intergenic | 20.0% |
| !!! | ACTTTTTTCAAAATCTTTGA+AGG | - | tig0023841:62889-62908 | Msa1411790:CDS | 20.0% |
| !!! | CTTTTTTCAAAATCTTTGAA+GGG | - | tig0023841:62890-62909 | Msa1411790:CDS | 20.0% |
| !!! | ACTTTTAAAATTGAACATCT+TGG | - | tig0023841:63121-63140 | Msa1411790:five_prime_UTR | 20.0% |
| ! | ATCAAAGAATTAGAAAGAAG+GGG | + | tig0023841:59735-59754 | None:intergenic | 25.0% |
| ! | GATCAAAGAATTAGAAAGAA+GGG | + | tig0023841:59736-59755 | None:intergenic | 25.0% |
| ! | TTATAGTGAGATTCAAGAAA+AGG | - | tig0023841:60432-60451 | Msa1411790:intron | 25.0% |
| ! | TATAGTGAGATTCAAGAAAA+GGG | - | tig0023841:60433-60452 | Msa1411790:intron | 25.0% |
| !!! | TTCAAGAAAAGGGTTTTTTT+TGG | - | tig0023841:60443-60462 | Msa1411790:intron | 25.0% |
| !!! | TCAAGAAAAGGGTTTTTTTT+GGG | - | tig0023841:60444-60463 | Msa1411790:intron | 25.0% |
| ! | TTTGATCAAATTGTTGAAAC+TGG | - | tig0023841:60469-60488 | Msa1411790:intron | 25.0% |
| !!! | GTGAATAAACCTATTGATTT+AGG | - | tig0023841:60538-60557 | Msa1411790:intron | 25.0% |
| !! | GGTTTCTGAGAATTTAAATT+TGG | - | tig0023841:60666-60685 | Msa1411790:intron | 25.0% |
| !!! | TTTTACTGTTCTAAGAGAAT+TGG | - | tig0023841:60823-60842 | Msa1411790:intron | 25.0% |
| ! | GTTGTGTAGAATTGTTTAAT+TGG | - | tig0023841:61166-61185 | Msa1411790:intron | 25.0% |
| ! | AATTGGATTGAAATGAATAC+TGG | - | tig0023841:61183-61202 | Msa1411790:intron | 25.0% |
| ! | AAGTCAACATTGATATTTGA+TGG | + | tig0023841:61473-61492 | None:intergenic | 25.0% |
| ! | CAACAAATGTGTTTCTTTAA+TGG | + | tig0023841:61514-61533 | None:intergenic | 25.0% |
| !! | TTTGCACAATTAGTTTATGT+AGG | - | tig0023841:61549-61568 | Msa1411790:intron | 25.0% |
| !!! | CAAAGTTTTAGCAATAGAAA+AGG | + | tig0023841:61642-61661 | None:intergenic | 25.0% |
| !!! | CAAAGTTTTAGCAATAGAAA+AGG | + | tig0023841:61642-61661 | None:intergenic | 25.0% |
| !! | GTTTTCATGGAATTTGTAAA+TGG | - | tig0023841:61967-61986 | Msa1411790:CDS | 25.0% |
| ! | TAGGAAAGTCTTTATAGAAT+TGG | - | tig0023841:62042-62061 | Msa1411790:CDS | 25.0% |
| !! | TTGATTTTTACTTTCAACCT+TGG | - | tig0023841:62083-62102 | Msa1411790:CDS | 25.0% |
| ! | ATGGGATATGAAAAAAAATC+AGG | + | tig0023841:62423-62442 | None:intergenic | 25.0% |
| ! | TAAAATAACATACAACACGT+CGG | + | tig0023841:62861-62880 | None:intergenic | 25.0% |
| !!! | ATTTAGGAACAGGTTTTTTA+CGG | - | tig0023841:62993-63012 | Msa1411790:exon | 25.0% |
| GGATCAAAGAATTAGAAAGA+AGG | + | tig0023841:59737-59756 | None:intergenic | 30.0% | |
| !! | GAAAAACTTGCTAATCTCAA+AGG | - | tig0023841:59816-59835 | Msa1411790:three_prime_UTR | 30.0% |
| !! | GTTTTGTTGGAATGTTGTTT+AGG | + | tig0023841:59941-59960 | None:intergenic | 30.0% |
| AAACAAACCCATTATCTTTC+TGG | - | tig0023841:60005-60024 | Msa1411790:three_prime_UTR | 30.0% | |
| AGTAGAACCAGAAAGATAAT+GGG | + | tig0023841:60015-60034 | None:intergenic | 30.0% | |
| AAGTAGAACCAGAAAGATAA+TGG | + | tig0023841:60016-60035 | None:intergenic | 30.0% | |
| ! | AAAACTTTTCCAATCTCTTC+AGG | + | tig0023841:60565-60584 | None:intergenic | 30.0% |
| ! | TGAAGAGATTGGAAAAGTTT+TGG | - | tig0023841:60564-60583 | Msa1411790:intron | 30.0% |
| ! | GAAGAGATTGGAAAAGTTTT+GGG | - | tig0023841:60565-60584 | Msa1411790:intron | 30.0% |
| ! | TTTTGCATGATTCAGCTTTA+GGG | - | tig0023841:60629-60648 | Msa1411790:intron | 30.0% |
| ! | TTTAGGGTTTACTGCAAATT+GGG | - | tig0023841:60645-60664 | Msa1411790:intron | 30.0% |
| AAAACTACCTCTCTAATCAA+AGG | + | tig0023841:60769-60788 | None:intergenic | 30.0% | |
| ! | TTGATTAGAGAGGTAGTTTT+AGG | - | tig0023841:60769-60788 | Msa1411790:intron | 30.0% |
| !! | TGATTAGAGAGGTAGTTTTA+GGG | - | tig0023841:60770-60789 | Msa1411790:intron | 30.0% |
| !! | TCCTTATGTTTTTGCAAAAG+TGG | - | tig0023841:60795-60814 | Msa1411790:intron | 30.0% |
| !! | ACCACTTTTGCAAAAACATA+AGG | + | tig0023841:60799-60818 | None:intergenic | 30.0% |
| !! | TAGCTTTGATTTAGCTGAAT+GGG | - | tig0023841:60933-60952 | Msa1411790:intron | 30.0% |
| GTAATGCTTGAATTAAGAAC+AGG | + | tig0023841:61291-61310 | None:intergenic | 30.0% | |
| TTCTTAATTCAAGCATTACG+TGG | - | tig0023841:61292-61311 | Msa1411790:intron | 30.0% | |
| CTCTATAAATAATGCATGAC+AGG | + | tig0023841:61337-61356 | None:intergenic | 30.0% | |
| TCGAAATCTCTCATAATTCA+TGG | - | tig0023841:61367-61386 | Msa1411790:intron | 30.0% | |
| CTTACATTACCAAGTAGAAA+AGG | - | tig0023841:61419-61438 | Msa1411790:intron | 30.0% | |
| ! | AACATTGATATTTGATGGCA+CGG | + | tig0023841:61468-61487 | None:intergenic | 30.0% |
| ! | TGTTTCTTTAATGGGTGTAT+AGG | + | tig0023841:61505-61524 | None:intergenic | 30.0% |
| !!! | TCACTAGACTAGTTTTAAGT+TGG | + | tig0023841:61610-61629 | None:intergenic | 30.0% |
| ! | ACTTAAAACTAGTCTAGTGA+AGG | - | tig0023841:61610-61629 | Msa1411790:intron | 30.0% |
| !!! | TCACTAGACTAGTTTTAAGT+TGG | + | tig0023841:61610-61629 | None:intergenic | 30.0% |
| ! | ACTTAAAACTAGTCTAGTGA+AGG | - | tig0023841:61610-61629 | Msa1411790:intron | 30.0% |
| !!! | TATACTTTGGGATGTTTTCA+TGG | - | tig0023841:61954-61973 | Msa1411790:CDS | 30.0% |
| GTATGTTACAACAAAGAACT+AGG | - | tig0023841:62023-62042 | Msa1411790:CDS | 30.0% | |
| AATTCAAGGAGTAATGATCT+TGG | - | tig0023841:62260-62279 | Msa1411790:CDS | 30.0% | |
| GGATATGAAAAAAAATCAGG+AGG | + | tig0023841:62420-62439 | None:intergenic | 30.0% | |
| !!! | TTTTCTGTTTGCTGTTTCTT+AGG | - | tig0023841:62532-62551 | Msa1411790:CDS | 30.0% |
| ! | TCAACTTTTCTGACAGTTTT+TGG | + | tig0023841:62611-62630 | None:intergenic | 30.0% |
| AAGTGATCACTGAATATTAC+TGG | - | tig0023841:62797-62816 | Msa1411790:CDS | 30.0% | |
| !! | ACAAAAACCAGTTTTTCAGT+TGG | + | tig0023841:62967-62986 | None:intergenic | 30.0% |
| !!! | GAAAAACTGGTTTTTGTGTT+TGG | - | tig0023841:62970-62989 | Msa1411790:CDS | 30.0% |
| ! | TGGTTTTTGTGTTTGGATTT+AGG | - | tig0023841:62977-62996 | Msa1411790:CDS | 30.0% |
| !!! | TTTAGGAACAGGTTTTTTAC+GGG | - | tig0023841:62994-63013 | Msa1411790:exon | 30.0% |
| AGTAAAAAAGCTAGGGAATC+TGG | + | tig0023841:59758-59777 | None:intergenic | 35.0% | |
| TTAATCACACTCTCATCTCA+TGG | - | tig0023841:59841-59860 | Msa1411790:three_prime_UTR | 35.0% | |
| !! | TGTTGTTGTTGTTGATGATC+TGG | + | tig0023841:59890-59909 | None:intergenic | 35.0% |
| !!! | GGTTTTGGATTTGGTTTTGT+TGG | + | tig0023841:59954-59973 | None:intergenic | 35.0% |
| AAACCAAATCCAAAACCCAA+AGG | - | tig0023841:59957-59976 | Msa1411790:three_prime_UTR | 35.0% | |
| !! | GATAATGGGTTTGTTTGTTG+AGG | + | tig0023841:60001-60020 | None:intergenic | 35.0% |
| AGAAGTGAAGAGGAAGAAAA+GGG | + | tig0023841:60062-60081 | None:intergenic | 35.0% | |
| AAGAAGTGAAGAGGAAGAAA+AGG | + | tig0023841:60063-60082 | None:intergenic | 35.0% | |
| AAAGAGATGAAGAAGTGAAG+AGG | + | tig0023841:60072-60091 | None:intergenic | 35.0% | |
| GAATTTGGACTTTGATTGTG+CGG | + | tig0023841:60162-60181 | None:intergenic | 35.0% | |
| AGAACAGTTTCTGTAGGATT+GGG | + | tig0023841:60238-60257 | None:intergenic | 35.0% | |
| AGAATGAGAACAGTTTCTGT+AGG | + | tig0023841:60244-60263 | None:intergenic | 35.0% | |
| GAAACTGTTCTCATTCTTCA+TGG | - | tig0023841:60247-60266 | Msa1411790:CDS | 35.0% | |
| CGATAAGAATATGAACTGAG+AGG | + | tig0023841:60277-60296 | None:intergenic | 35.0% | |
| ATTCAATCTCTTAGCACACA+AGG | - | tig0023841:60304-60323 | Msa1411790:intron | 35.0% | |
| ATCAGTAGAAGTTTCAGTTG+AGG | - | tig0023841:60375-60394 | Msa1411790:intron | 35.0% | |
| TCAGTAGAAGTTTCAGTTGA+GGG | - | tig0023841:60376-60395 | Msa1411790:intron | 35.0% | |
| AACTGGACAAATTCCTTATG+AGG | - | tig0023841:60486-60505 | Msa1411790:intron | 35.0% | |
| ! | TTCTAGCTAGAATGTCAAAG+AGG | - | tig0023841:60512-60531 | Msa1411790:intron | 35.0% |
| TCTTCAGGACCTAAATCAAT+AGG | + | tig0023841:60550-60569 | None:intergenic | 35.0% | |
| TCATGCAAAACCAAATGAAC+AGG | + | tig0023841:60619-60638 | None:intergenic | 35.0% | |
| ! | GTTTTGCATGATTCAGCTTT+AGG | - | tig0023841:60628-60647 | Msa1411790:intron | 35.0% |
| !! | CTTTAGGGTTTACTGCAAAT+TGG | - | tig0023841:60644-60663 | Msa1411790:intron | 35.0% |
| !! | TGCTTTTCCTATTTGGGTTT+TGG | - | tig0023841:60738-60757 | Msa1411790:intron | 35.0% |
| !! | TACTGTTCTAAGAGAATTGG+TGG | - | tig0023841:60826-60845 | Msa1411790:intron | 35.0% |
| ! | TTCTAAGAGAATTGGTGGTT+TGG | - | tig0023841:60831-60850 | Msa1411790:intron | 35.0% |
| !! | CTAGCTTTGATTTAGCTGAA+TGG | - | tig0023841:60932-60951 | Msa1411790:intron | 35.0% |
| ! | AGCTTTGATTTAGCTGAATG+GGG | - | tig0023841:60934-60953 | Msa1411790:intron | 35.0% |
| !! | GCAAAGTTTGTTACTCATTC+TGG | - | tig0023841:61063-61082 | Msa1411790:intron | 35.0% |
| !! | AAGTTTGTTACTCATTCTGG+AGG | - | tig0023841:61066-61085 | Msa1411790:intron | 35.0% |
| ! | CTATCAAAGCCTTTTCTACT+TGG | + | tig0023841:61431-61450 | None:intergenic | 35.0% |
| GGTTCATTCTGTCTCATATT+AGG | + | tig0023841:61580-61599 | None:intergenic | 35.0% | |
| !!! | TAGTTTTAAGTTGGAGCATG+AGG | + | tig0023841:61601-61620 | None:intergenic | 35.0% |
| ! | TAAAACTAGTCTAGTGAAGG+AGG | - | tig0023841:61613-61632 | Msa1411790:intron | 35.0% |
| TATGCGTACATAAATGGAAG+AGG | + | tig0023841:61675-61694 | None:intergenic | 35.0% | |
| GGTTCATTCTGTCTCATATT+AGG | + | tig0023841:61580-61599 | None:intergenic | 35.0% | |
| !!! | TAGTTTTAAGTTGGAGCATG+AGG | + | tig0023841:61601-61620 | None:intergenic | 35.0% |
| ! | TAAAACTAGTCTAGTGAAGG+AGG | - | tig0023841:61613-61632 | Msa1411790:intron | 35.0% |
| TATGCGTACATAAATGGAAG+AGG | + | tig0023841:61675-61694 | None:intergenic | 35.0% | |
| ACTAATGATGAGCTAATGTC+AGG | + | tig0023841:61927-61946 | None:intergenic | 35.0% | |
| AGTAATGATCTTGGTTCCTT+TGG | - | tig0023841:62269-62288 | Msa1411790:CDS | 35.0% | |
| GTAATGATCTTGGTTCCTTT+GGG | - | tig0023841:62270-62289 | Msa1411790:CDS | 35.0% | |
| TAATGATCTTGGTTCCTTTG+GGG | - | tig0023841:62271-62290 | Msa1411790:CDS | 35.0% | |
| CAAGGTTTCTTTGCTTTCAT+TGG | + | tig0023841:62391-62410 | None:intergenic | 35.0% | |
| CATCAAACATCTTCTGTATG+TGG | + | tig0023841:62655-62674 | None:intergenic | 35.0% | |
| GATGAAGCTAAAAGTGATGA+TGG | - | tig0023841:62671-62690 | Msa1411790:CDS | 35.0% | |
| CTGGTTATATGGATGCATAT+GGG | - | tig0023841:62747-62766 | Msa1411790:CDS | 35.0% | |
| GATCACTTTCACCAATCATT+TGG | + | tig0023841:62785-62804 | None:intergenic | 35.0% | |
| ACCTTGTAACAATTATGCAC+AGG | - | tig0023841:62929-62948 | Msa1411790:CDS | 35.0% | |
| CCTTGTAACAATTATGCACA+GGG | - | tig0023841:62930-62949 | Msa1411790:CDS | 35.0% | |
| TTGTGTTTGGATTTAGGAAC+AGG | - | tig0023841:62983-63002 | Msa1411790:CDS | 35.0% | |
| !!! | TTAGGAACAGGTTTTTTACG+GGG | - | tig0023841:62995-63014 | Msa1411790:exon | 35.0% |
| !! | TTGTGTTGTTGTTGGCCTTT+GGG | + | tig0023841:59975-59994 | None:intergenic | 40.0% |
| ! | AATGGGTTTGTTTGTTGAGG+TGG | + | tig0023841:59998-60017 | None:intergenic | 40.0% |
| AAAGTGAGGAACCATTGTTG+TGG | + | tig0023841:60106-60125 | None:intergenic | 40.0% | |
| AGTTTCTGTAGGATTGGGAA+TGG | + | tig0023841:60233-60252 | None:intergenic | 40.0% | |
| GAGAACAGTTTCTGTAGGAT+TGG | + | tig0023841:60239-60258 | None:intergenic | 40.0% | |
| TTATCTGAAAATCCGCTTCC+CGG | + | tig0023841:60355-60374 | None:intergenic | 40.0% | |
| CAGTAGAAGTTTCAGTTGAG+GGG | - | tig0023841:60377-60396 | Msa1411790:intron | 40.0% | |
| CTAGCTAGAACTTCCTCATA+AGG | + | tig0023841:60502-60521 | None:intergenic | 40.0% | |
| GATTTAGGTCCTGAAGAGAT+TGG | - | tig0023841:60553-60572 | Msa1411790:intron | 40.0% | |
| !!! | GATTGGAAAAGTTTTGGGAG+AGG | - | tig0023841:60570-60589 | Msa1411790:intron | 40.0% |
| GGAGAGGTTATTGCTACATT+AGG | - | tig0023841:60586-60605 | Msa1411790:intron | 40.0% | |
| !! | AGGATTAGCTCCTGTTCATT+TGG | - | tig0023841:60606-60625 | Msa1411790:intron | 40.0% |
| ! | ATTCGGGTGCTTTTCCTATT+TGG | - | tig0023841:60731-60750 | Msa1411790:intron | 40.0% |
| ! | TTCGGGTGCTTTTCCTATTT+GGG | - | tig0023841:60732-60751 | Msa1411790:intron | 40.0% |
| GGAACATCCAAAACCCAAAT+AGG | + | tig0023841:60748-60767 | None:intergenic | 40.0% | |
| GGATGTTCCTTTGATTAGAG+AGG | - | tig0023841:60759-60778 | Msa1411790:intron | 40.0% | |
| TTTGGATGCTGATGCACATA+GGG | - | tig0023841:60849-60868 | Msa1411790:intron | 40.0% | |
| ! | TTTGATTTAGCTGAATGGGG+TGG | - | tig0023841:60937-60956 | Msa1411790:intron | 40.0% |
| ATATGCCAATGCAACTGATC+TGG | - | tig0023841:60977-60996 | Msa1411790:intron | 40.0% | |
| AACTGATCTGGTCTAGTGAT+TGG | - | tig0023841:60989-61008 | Msa1411790:intron | 40.0% | |
| !! | CTAGTGATTGGTCTGTAGAA+TGG | - | tig0023841:61001-61020 | Msa1411790:intron | 40.0% |
| TGAGTAACAAACTTTGCCCA+AGG | + | tig0023841:61060-61079 | None:intergenic | 40.0% | |
| ATAATGCATGACAGGCACTA+TGG | + | tig0023841:61329-61348 | None:intergenic | 40.0% | |
| CCAGCATATGCGTACATAAA+TGG | + | tig0023841:61681-61700 | None:intergenic | 40.0% | |
| CCATTTATGTACGCATATGC+TGG | - | tig0023841:61678-61697 | Msa1411790:intron | 40.0% | |
| !! | CATATGCTGGTTTGATGTTC+TGG | - | tig0023841:61691-61710 | Msa1411790:intron | 40.0% |
| CCAGCATATGCGTACATAAA+TGG | + | tig0023841:61681-61700 | None:intergenic | 40.0% | |
| CCATTTATGTACGCATATGC+TGG | - | tig0023841:61678-61697 | Msa1411790:intron | 40.0% | |
| TCAACCTTGGTGAACTACAA+TGG | - | tig0023841:62096-62115 | Msa1411790:CDS | 40.0% | |
| AAGACCATTGTAGTTCACCA+AGG | + | tig0023841:62103-62122 | None:intergenic | 40.0% | |
| ! | ATAAACGATTCGGATCCATC+AGG | + | tig0023841:62463-62482 | None:intergenic | 40.0% |
| !! | TCTGTTTGCTGTTTCTTAGG+AGG | - | tig0023841:62535-62554 | Msa1411790:CDS | 40.0% |
| ACATCTTCTGTATGTGGTCT+GGG | + | tig0023841:62649-62668 | None:intergenic | 40.0% | |
| AACATCTTCTGTATGTGGTC+TGG | + | tig0023841:62650-62669 | None:intergenic | 40.0% | |
| !! | AGTGATGATGGTCATGATCA+TGG | - | tig0023841:62683-62702 | Msa1411790:CDS | 40.0% |
| CATCCATGAAGCTGGTTATA+TGG | - | tig0023841:62736-62755 | Msa1411790:CDS | 40.0% | |
| CATCCATATAACCAGCTTCA+TGG | + | tig0023841:62742-62761 | None:intergenic | 40.0% | |
| GCTGGTTATATGGATGCATA+TGG | - | tig0023841:62746-62765 | Msa1411790:CDS | 40.0% | |
| TATATGGATGCATATGGGCT+TGG | - | tig0023841:62752-62771 | Msa1411790:CDS | 40.0% | |
| TTGGTCATGGACCAAATGAT+TGG | - | tig0023841:62771-62790 | Msa1411790:CDS | 40.0% | |
| CCCTGTGCATAATTGTTACA+AGG | + | tig0023841:62933-62952 | None:intergenic | 40.0% | |
| GACAGCATCATTGCATAGCA+TGG | + | tig0023841:59713-59732 | None:intergenic | 45.0% | |
| !!! | TGGCCTTTGGGTTTTGGATT+TGG | + | tig0023841:59963-59982 | None:intergenic | 45.0% |
| !!! | TGTTGTTGGCCTTTGGGTTT+TGG | + | tig0023841:59969-59988 | None:intergenic | 45.0% |
| !! | GTTGTGTTGTTGTTGGCCTT+TGG | + | tig0023841:59976-59995 | None:intergenic | 45.0% |
| ! | TGAGGTGGTTGTGTTGTTGT+TGG | + | tig0023841:59983-60002 | None:intergenic | 45.0% |
| CTTCTTCCTCACCACAACAA+TGG | - | tig0023841:60092-60111 | Msa1411790:CDS | 45.0% | |
| ! | GTTGTTGGTTGGGGTGAATT+TGG | + | tig0023841:60177-60196 | None:intergenic | 45.0% |
| TCTGTAGGATTGGGAATGGT+GGG | + | tig0023841:60229-60248 | None:intergenic | 45.0% | |
| TTCTGTAGGATTGGGAATGG+TGG | + | tig0023841:60230-60249 | None:intergenic | 45.0% | |
| TGTTATTGCCATCGACCTTC+CGG | - | tig0023841:60333-60352 | Msa1411790:intron | 45.0% | |
| AGAAGTTTCAGTTGAGGGGT+TGG | - | tig0023841:60381-60400 | Msa1411790:intron | 45.0% | |
| TTTCAGTTGAGGGGTTGGAT+GGG | - | tig0023841:60386-60405 | Msa1411790:intron | 45.0% | |
| ! | AAAGCACCCGAATTTGAAGG+TGG | + | tig0023841:60724-60743 | None:intergenic | 45.0% |
| !! | GGAAAAGCACCCGAATTTGA+AGG | + | tig0023841:60727-60746 | None:intergenic | 45.0% |
| GTTTGGATGCTGATGCACAT+AGG | - | tig0023841:60848-60867 | Msa1411790:intron | 45.0% | |
| !! | ATAGGGTGCTGTTGAAGTCT+GGG | - | tig0023841:60866-60885 | Msa1411790:intron | 45.0% |
| CTAGACCAGATCAGTTGCAT+TGG | + | tig0023841:60985-61004 | None:intergenic | 45.0% | |
| !! | CATATGCTGGTTTGACGTTC+TGG | - | tig0023841:61864-61883 | Msa1411790:CDS | 45.0% |
| ATCTTCTCTTCTCTCCCCAA+AGG | + | tig0023841:62288-62307 | None:intergenic | 45.0% | |
| AAAATCAGGAGGCAAGAGCA+AGG | + | tig0023841:62409-62428 | None:intergenic | 45.0% | |
| ! | TCTGTATGTGGTCTGGGATA+GGG | + | tig0023841:62643-62662 | None:intergenic | 45.0% |
| ! | TTCTGTATGTGGTCTGGGAT+AGG | + | tig0023841:62644-62663 | None:intergenic | 45.0% |
| GATGGTCATGATCATGGTCA+CGG | - | tig0023841:62689-62708 | Msa1411790:CDS | 45.0% | |
| TCTTGCGCCAACTGAAAAAC+TGG | - | tig0023841:62957-62976 | Msa1411790:CDS | 45.0% | |
| GAGGAACCATTGTTGTGGTG+AGG | + | tig0023841:60101-60120 | None:intergenic | 50.0% | |
| !! | TAGTGTTGACGGAGAGTGGT+GGG | + | tig0023841:60130-60149 | None:intergenic | 50.0% |
| CTCCGTCAACACTACTCCAA+TGG | - | tig0023841:60136-60155 | Msa1411790:CDS | 50.0% | |
| ! | GGCCATTGGAGTAGTGTTGA+CGG | + | tig0023841:60141-60160 | None:intergenic | 50.0% |
| GACTTTGATTGTGCGGCCAT+TGG | + | tig0023841:60155-60174 | None:intergenic | 50.0% | |
| !! | AGGTGGATGGGTTGTTGGTT+GGG | + | tig0023841:60187-60206 | None:intergenic | 50.0% |
| !! | TGAAGAGGTGGATGGGTTGT+TGG | + | tig0023841:60192-60211 | None:intergenic | 50.0% |
| TGGAAGGTGAAGAGGTGGAT+GGG | + | tig0023841:60199-60218 | None:intergenic | 50.0% | |
| CTGTAGGATTGGGAATGGTG+GGG | + | tig0023841:60228-60247 | None:intergenic | 50.0% | |
| GTTATTGCCATCGACCTTCC+GGG | - | tig0023841:60334-60353 | Msa1411790:intron | 50.0% | |
| GTTTCAGTTGAGGGGTTGGA+TGG | - | tig0023841:60385-60404 | Msa1411790:intron | 50.0% | |
| AGGGGTTGGATGGGATCTTT+GGG | - | tig0023841:60395-60414 | Msa1411790:intron | 50.0% | |
| ACCCGAATTTGAAGGTGGCA+CGG | + | tig0023841:60719-60738 | None:intergenic | 50.0% | |
| !! | CATAGGGTGCTGTTGAAGTC+TGG | - | tig0023841:60865-60884 | Msa1411790:intron | 50.0% |
| !! | TAGGGTGCTGTTGAAGTCTG+GGG | - | tig0023841:60867-60886 | Msa1411790:intron | 50.0% |
| TGTTGAAGTCTGGGGATGGA+AGG | - | tig0023841:60875-60894 | Msa1411790:intron | 50.0% | |
| AGGAAAGCGGTTGTGGCTAT+TGG | - | tig0023841:60895-60914 | Msa1411790:intron | 50.0% | |
| ! | TTACTCATTCTGGAGGCCGT+TGG | - | tig0023841:61073-61092 | Msa1411790:intron | 50.0% |
| ! | TACTCATTCTGGAGGCCGTT+GGG | - | tig0023841:61074-61093 | Msa1411790:intron | 50.0% |
| GAGTAGGCGAATAGCCGAAT+GGG | + | tig0023841:62441-62460 | None:intergenic | 50.0% | |
| GATTCGGATCCATCAGGAGT+AGG | + | tig0023841:62457-62476 | None:intergenic | 50.0% | |
| ! | TGTATGTGGTCTGGGATAGG+GGG | + | tig0023841:62641-62660 | None:intergenic | 50.0% |
| ! | CTGTATGTGGTCTGGGATAG+GGG | + | tig0023841:62642-62661 | None:intergenic | 50.0% |
| CATGGATGTGAGCTTCACCA+AGG | + | tig0023841:62724-62743 | None:intergenic | 50.0% | |
| GAAGCTCACATCCATGAAGC+TGG | - | tig0023841:62728-62747 | Msa1411790:CDS | 50.0% | |
| ! | GATGCATATGGGCTTGGTCA+TGG | - | tig0023841:62758-62777 | Msa1411790:CDS | 50.0% |
| !! | GGAGAGTGGTGGGTAAAGTG+AGG | + | tig0023841:60120-60139 | None:intergenic | 55.0% |
| !! | GTAGTGTTGACGGAGAGTGG+TGG | + | tig0023841:60131-60150 | None:intergenic | 55.0% |
| !! | GGAGTAGTGTTGACGGAGAG+TGG | + | tig0023841:60134-60153 | None:intergenic | 55.0% |
| !! | GGTGGATGGGTTGTTGGTTG+GGG | + | tig0023841:60186-60205 | None:intergenic | 55.0% |
| !! | GAGGTGGATGGGTTGTTGGT+TGG | + | tig0023841:60188-60207 | None:intergenic | 55.0% |
| CTGGAAGGTGAAGAGGTGGA+TGG | + | tig0023841:60200-60219 | None:intergenic | 55.0% | |
| CTGAAAATCCGCTTCCCGGA+AGG | + | tig0023841:60351-60370 | None:intergenic | 55.0% | |
| GAGGGGTTGGATGGGATCTT+TGG | - | tig0023841:60394-60413 | Msa1411790:intron | 55.0% | |
| GGTTGGATGGGATCTTTGGG+AGG | - | tig0023841:60398-60417 | Msa1411790:intron | 55.0% | |
| GCCCGTGCCACCTTCAAATT+CGG | - | tig0023841:60714-60733 | Msa1411790:intron | 55.0% | |
| CCCGAATTTGAAGGTGGCAC+GGG | + | tig0023841:60718-60737 | None:intergenic | 55.0% | |
| CCCGTGCCACCTTCAAATTC+GGG | - | tig0023841:60715-60734 | Msa1411790:intron | 55.0% | |
| ! | GTGCTGTTGAAGTCTGGGGA+TGG | - | tig0023841:60871-60890 | Msa1411790:intron | 55.0% |
| GTCTGGGGATGGAAGGAAAG+CGG | - | tig0023841:60882-60901 | Msa1411790:intron | 55.0% | |
| GGATGGAAGGAAAGCGGTTG+TGG | - | tig0023841:60888-60907 | Msa1411790:intron | 55.0% | |
| !! | GCTGAATGGGGTGGTTCTGA+TGG | - | tig0023841:60946-60965 | Msa1411790:intron | 55.0% |
| TCTGTAGAATGGAGCCGCGA+AGG | - | tig0023841:61012-61031 | Msa1411790:intron | 55.0% | |
| CTGTAGAATGGAGCCGCGAA+GGG | - | tig0023841:61013-61032 | Msa1411790:intron | 55.0% | |
| AATGGAGCCGCGAAGGGAAT+CGG | - | tig0023841:61019-61038 | Msa1411790:intron | 55.0% | |
| GGTTGCTGGTGCTCTTCCTT+GGG | - | tig0023841:61041-61060 | Msa1411790:intron | 55.0% | |
| TTGTGCACACCTGAGCCCAA+CGG | + | tig0023841:61092-61111 | None:intergenic | 55.0% | |
| GGAGTAGGCGAATAGCCGAA+TGG | + | tig0023841:62442-62461 | None:intergenic | 55.0% | |
| GGCTATTCGCCTACTCCTGA+TGG | - | tig0023841:62445-62464 | Msa1411790:CDS | 55.0% | |
| CCAGCTGGAAGGTGAAGAGG+TGG | + | tig0023841:60204-60223 | None:intergenic | 60.0% | |
| CCACCTCTTCACCTTCCAGC+TGG | - | tig0023841:60201-60220 | Msa1411790:CDS | 60.0% | |
| GGTCCAGCTGGAAGGTGAAG+AGG | + | tig0023841:60207-60226 | None:intergenic | 60.0% | |
| ! | AATGGTGGGGTCCAGCTGGA+AGG | + | tig0023841:60215-60234 | None:intergenic | 60.0% |
| ATGGAGCCGCGAAGGGAATC+GGG | - | tig0023841:61020-61039 | Msa1411790:intron | 60.0% | |
| CAGCAACCCGATTCCCTTCG+CGG | + | tig0023841:61029-61048 | None:intergenic | 60.0% | |
| GGGTTGCTGGTGCTCTTCCT+TGG | - | tig0023841:61040-61059 | Msa1411790:intron | 60.0% | |
| GGTCACGGACATGATCGCCT+TGG | - | tig0023841:62704-62723 | Msa1411790:CDS | 60.0% | |
| ! | TGGGAATGGTGGGGTCCAGC+TGG | + | tig0023841:60219-60238 | None:intergenic | 65.0% |
| GCCATCGACCTTCCGGGAAG+CGG | - | tig0023841:60340-60359 | Msa1411790:intron | 65.0% | |
| TCCGCTTCCCGGAAGGTCGA+TGG | + | tig0023841:60344-60363 | None:intergenic | 65.0% | |
| ! | CGCGAAGGGAATCGGGTTGC+TGG | - | tig0023841:61027-61046 | Msa1411790:intron | 65.0% |
| ! | TTCTGGAGGCCGTTGGGCTC+AGG | - | tig0023841:61080-61099 | Msa1411790:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023841 | gene | 59709 | 63157 | 59709 | ID=Msa1411790;Name=Msa1411790 |
| tig0023841 | mRNA | 59709 | 63157 | 59709 | ID=Msa1411790-mRNA-1;Parent=Msa1411790;Name=Msa1411790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=151|1|1|1|1|1|2|361|494 |
| tig0023841 | exon | 59709 | 60312 | 59709 | ID=Msa1411790-mRNA-1:exon:20278;Parent=Msa1411790-mRNA-1 |
| tig0023841 | exon | 61765 | 63157 | 61765 | ID=Msa1411790-mRNA-1:exon:20277;Parent=Msa1411790-mRNA-1 |
| tig0023841 | five_prime_UTR | 63007 | 63157 | 63007 | ID=Msa1411790-mRNA-1:five_prime_utr;Parent=Msa1411790-mRNA-1 |
| tig0023841 | CDS | 61765 | 63006 | 61765 | ID=Msa1411790-mRNA-1:cds;Parent=Msa1411790-mRNA-1 |
| tig0023841 | CDS | 60070 | 60312 | 60070 | ID=Msa1411790-mRNA-1:cds;Parent=Msa1411790-mRNA-1 |
| tig0023841 | three_prime_UTR | 59709 | 60069 | 59709 | ID=Msa1411790-mRNA-1:three_prime_utr;Parent=Msa1411790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
