Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420790 | XP_003601522.1 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 846 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420790 | sp|Q9SSE5|COL9_ARATH | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 9.24e-142 | 411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420790 | G7J8U1 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 846 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0420790 | TF | C2C2-CO-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001810 | Msa0420790 | 0.896630 | 3.068939e-76 | -8.615850e-47 |
| Msa0140630 | Msa0420790 | 0.802405 | 5.698379e-49 | -8.615850e-47 |
| Msa0369210 | Msa0420790 | 0.808273 | 3.359200e-50 | -8.615850e-47 |
| Msa0381500 | Msa0420790 | 0.814334 | 1.624240e-51 | -8.615850e-47 |
| Msa0387830 | Msa0420790 | 0.927056 | 1.998563e-91 | -8.615850e-47 |
| Msa0402210 | Msa0420790 | 0.819654 | 1.036568e-52 | -8.615850e-47 |
| Msa0420790 | Msa0438470 | 0.952108 | 4.914666e-110 | -8.615850e-47 |
| Msa0420790 | Msa0483770 | 0.828865 | 7.090207e-55 | -8.615850e-47 |
| Msa0420790 | Msa0512350 | 0.930855 | 8.904674e-94 | -8.615850e-47 |
| Msa0420790 | Msa0519950 | 0.812275 | 4.601805e-51 | -8.615850e-47 |
| Msa0420790 | Msa0550130 | 0.869947 | 2.113340e-66 | -8.615850e-47 |
| Msa0420790 | Msa0550150 | 0.835208 | 1.918153e-56 | -8.615850e-47 |
| Msa0420790 | Msa0574910 | 0.910970 | 1.031660e-82 | -8.615850e-47 |
| Msa0420790 | Msa0605630 | 0.830795 | 2.400771e-55 | -8.615850e-47 |
| Msa0420790 | Msa0605640 | 0.833829 | 4.259413e-56 | -8.615850e-47 |
| Msa0420790 | Msa0646580 | 0.838865 | 2.230830e-57 | -8.615850e-47 |
| Msa0420790 | Msa0686220 | 0.824312 | 8.642925e-54 | -8.615850e-47 |
| Msa0420790 | Msa0686230 | 0.856822 | 2.480460e-62 | -8.615850e-47 |
| Msa0420790 | Msa0837930 | -0.836989 | 6.771942e-57 | -8.615850e-47 |
| Msa0420790 | Msa0867720 | 0.878556 | 2.552811e-69 | -8.615850e-47 |
| Msa0420790 | Msa0867730 | 0.825685 | 4.096165e-54 | -8.615850e-47 |
| Msa0420790 | Msa0930760 | 0.898231 | 6.497216e-77 | -8.615850e-47 |
| Msa0420790 | Msa0959480 | 0.802333 | 5.896541e-49 | -8.615850e-47 |
| Msa0420790 | Msa0968610 | 0.812410 | 4.299763e-51 | -8.615850e-47 |
| Msa0420790 | Msa1128260 | 0.805522 | 1.281801e-49 | -8.615850e-47 |
| Msa0420790 | Msa1130820 | -0.883650 | 3.750053e-71 | -8.615850e-47 |
| Msa0420790 | Msa1212190 | 0.873259 | 1.689551e-67 | -8.615850e-47 |
| Msa0420790 | Msa1212270 | 0.873527 | 1.372606e-67 | -8.615850e-47 |
| Msa0420790 | Msa1259910 | 0.870083 | 1.907657e-66 | -8.615850e-47 |
| Msa0420790 | Msa1406670 | -0.882757 | 7.966366e-71 | -8.615850e-47 |
| Msa0420790 | Msa1448870 | -0.880664 | 4.557750e-70 | -8.615850e-47 |
| Msa0355140 | Msa0420790 | 0.821320 | 4.299239e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420790 | MtrunA17_Chr3g0120711 | 99.270 | 411 | 3 | 0 | 1 | 411 | 1 | 411 | 0.0 | 846 |
| Msa0420790 | MtrunA17_Chr5g0429341 | 68.916 | 415 | 118 | 7 | 1 | 410 | 1 | 409 | 0.0 | 514 |
| Msa0420790 | MtrunA17_Chr2g0322941 | 51.818 | 110 | 52 | 1 | 1 | 110 | 40 | 148 | 8.10e-33 | 124 |
| Msa0420790 | MtrunA17_Chr7g0268691 | 48.544 | 103 | 53 | 0 | 5 | 107 | 20 | 122 | 1.84e-29 | 117 |
| Msa0420790 | MtrunA17_Chr7g0268691 | 62.500 | 48 | 18 | 0 | 348 | 395 | 322 | 369 | 7.35e-12 | 66.6 |
| Msa0420790 | MtrunA17_Chr1g0209071 | 44.860 | 107 | 57 | 1 | 1 | 107 | 1 | 105 | 1.03e-24 | 103 |
| Msa0420790 | MtrunA17_Chr2g0322951 | 49.550 | 111 | 40 | 3 | 303 | 405 | 41 | 143 | 1.45e-24 | 98.6 |
| Msa0420790 | MtrunA17_Chr7g0251781 | 35.971 | 139 | 81 | 2 | 1 | 132 | 1 | 138 | 9.29e-22 | 96.3 |
| Msa0420790 | MtrunA17_Chr7g0251781 | 56.061 | 66 | 29 | 0 | 331 | 396 | 318 | 383 | 1.34e-14 | 75.1 |
| Msa0420790 | MtrunA17_Chr1g0150471 | 44.048 | 84 | 46 | 1 | 4 | 86 | 5 | 88 | 4.71e-17 | 81.6 |
| Msa0420790 | MtrunA17_Chr3g0136701 | 39.216 | 102 | 61 | 1 | 4 | 104 | 5 | 106 | 4.19e-16 | 78.2 |
| Msa0420790 | MtrunA17_Chr3g0136701 | 45.833 | 72 | 36 | 1 | 333 | 401 | 208 | 279 | 3.44e-11 | 63.5 |
| Msa0420790 | MtrunA17_Chr4g0072871 | 38.889 | 90 | 54 | 1 | 4 | 92 | 21 | 110 | 4.02e-15 | 76.3 |
| Msa0420790 | MtrunA17_Chr7g0220721 | 41.758 | 91 | 52 | 1 | 5 | 94 | 26 | 116 | 1.39e-14 | 75.1 |
| Msa0420790 | MtrunA17_Chr4g0033641 | 38.542 | 96 | 49 | 2 | 1 | 86 | 1 | 96 | 9.46e-14 | 70.5 |
| Msa0420790 | MtrunA17_Chr5g0405151 | 38.095 | 84 | 44 | 1 | 1 | 76 | 1 | 84 | 1.94e-11 | 62.8 |
| Msa0420790 | MtrunA17_Chr1g0155811 | 34.021 | 97 | 53 | 2 | 1 | 86 | 1 | 97 | 3.07e-11 | 63.5 |
| Msa0420790 | MtrunA17_Chr4g0035651 | 35.052 | 97 | 52 | 2 | 1 | 86 | 1 | 97 | 4.30e-11 | 62.4 |
| Msa0420790 | MtrunA17_Chr3g0142221 | 33.673 | 98 | 53 | 2 | 1 | 86 | 1 | 98 | 6.76e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0420790 | AT3G07650.3 | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 9.40e-143 | 411 |
| Msa0420790 | AT3G07650.2 | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 9.40e-143 | 411 |
| Msa0420790 | AT3G07650.4 | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 9.40e-143 | 411 |
| Msa0420790 | AT3G07650.1 | 52.955 | 423 | 136 | 10 | 1 | 411 | 1 | 372 | 9.40e-143 | 411 |
| Msa0420790 | AT5G48250.1 | 53.699 | 419 | 140 | 10 | 1 | 411 | 1 | 373 | 1.37e-140 | 406 |
| Msa0420790 | AT3G21880.3 | 34.063 | 411 | 210 | 11 | 5 | 408 | 9 | 365 | 2.21e-61 | 203 |
| Msa0420790 | AT3G21880.2 | 34.063 | 411 | 210 | 11 | 5 | 408 | 9 | 365 | 2.21e-61 | 203 |
| Msa0420790 | AT3G21880.1 | 34.063 | 411 | 210 | 11 | 5 | 408 | 5 | 361 | 2.28e-61 | 202 |
| Msa0420790 | AT4G15250.1 | 53.153 | 111 | 50 | 2 | 5 | 115 | 5 | 113 | 6.87e-34 | 129 |
| Msa0420790 | AT4G15250.1 | 51.020 | 98 | 45 | 1 | 307 | 404 | 232 | 326 | 8.63e-20 | 90.1 |
| Msa0420790 | AT2G33500.1 | 47.170 | 106 | 55 | 1 | 5 | 109 | 12 | 117 | 2.85e-30 | 120 |
| Msa0420790 | AT2G33500.1 | 60.784 | 51 | 20 | 0 | 346 | 396 | 349 | 399 | 1.43e-12 | 69.3 |
| Msa0420790 | AT2G33500.2 | 47.170 | 106 | 55 | 1 | 5 | 109 | 12 | 117 | 2.99e-30 | 120 |
| Msa0420790 | AT2G33500.2 | 60.784 | 51 | 20 | 0 | 346 | 396 | 348 | 398 | 1.42e-12 | 69.3 |
| Msa0420790 | AT1G28050.1 | 39.041 | 146 | 86 | 2 | 5 | 147 | 9 | 154 | 5.62e-29 | 117 |
| Msa0420790 | AT1G28050.1 | 61.111 | 54 | 21 | 0 | 346 | 399 | 377 | 430 | 4.42e-13 | 70.9 |
| Msa0420790 | AT1G68190.1 | 46.847 | 111 | 57 | 2 | 1 | 110 | 10 | 119 | 5.83e-29 | 116 |
| Msa0420790 | AT1G68190.3 | 46.847 | 111 | 57 | 2 | 1 | 110 | 10 | 119 | 5.83e-29 | 116 |
| Msa0420790 | AT1G68190.2 | 46.847 | 111 | 57 | 2 | 1 | 110 | 39 | 148 | 1.03e-28 | 116 |
| Msa0420790 | AT2G47890.2 | 35.795 | 176 | 103 | 4 | 4 | 177 | 12 | 179 | 8.86e-26 | 105 |
| Msa0420790 | AT2G47890.3 | 36.420 | 162 | 95 | 3 | 4 | 165 | 12 | 165 | 3.20e-25 | 105 |
| Msa0420790 | AT2G47890.1 | 36.420 | 162 | 95 | 3 | 4 | 165 | 12 | 165 | 4.10e-25 | 105 |
| Msa0420790 | AT5G24930.1 | 43.333 | 90 | 50 | 1 | 4 | 92 | 5 | 94 | 4.10e-17 | 82.8 |
| Msa0420790 | AT5G24930.1 | 55.769 | 52 | 23 | 0 | 344 | 395 | 285 | 336 | 3.22e-11 | 64.7 |
| Msa0420790 | AT2G24790.1 | 42.222 | 90 | 51 | 1 | 4 | 92 | 7 | 96 | 8.61e-16 | 77.8 |
| Msa0420790 | AT2G24790.1 | 50.877 | 57 | 28 | 0 | 347 | 403 | 222 | 278 | 5.18e-11 | 63.5 |
| Msa0420790 | AT2G24790.2 | 42.222 | 90 | 51 | 1 | 4 | 92 | 7 | 96 | 8.70e-16 | 76.6 |
| Msa0420790 | AT5G15840.1 | 43.956 | 91 | 50 | 1 | 5 | 94 | 20 | 110 | 9.50e-15 | 75.9 |
| Msa0420790 | AT5G15840.2 | 43.956 | 91 | 50 | 1 | 5 | 94 | 20 | 110 | 1.60e-14 | 73.9 |
| Msa0420790 | AT5G15850.1 | 44.186 | 86 | 47 | 1 | 5 | 89 | 12 | 97 | 2.49e-14 | 74.3 |
| Msa0420790 | AT3G02380.1 | 40.000 | 100 | 53 | 2 | 5 | 97 | 16 | 115 | 1.44e-13 | 72.0 |
| Msa0420790 | AT3G02380.1 | 62.500 | 48 | 18 | 0 | 348 | 395 | 272 | 319 | 5.26e-12 | 67.0 |
| Msa0420790 | AT5G57660.1 | 30.216 | 139 | 92 | 2 | 5 | 142 | 22 | 156 | 2.34e-12 | 68.2 |
| Msa0420790 | AT2G31380.1 | 36.458 | 96 | 51 | 2 | 1 | 86 | 1 | 96 | 2.45e-12 | 66.6 |
| Msa0420790 | AT1G06040.2 | 37.500 | 96 | 50 | 2 | 1 | 86 | 1 | 96 | 3.92e-12 | 65.1 |
| Msa0420790 | AT1G06040.1 | 37.500 | 96 | 50 | 2 | 1 | 86 | 1 | 96 | 4.27e-12 | 66.2 |
| Msa0420790 | AT2G21320.1 | 39.286 | 84 | 43 | 1 | 1 | 76 | 1 | 84 | 5.81e-11 | 61.6 |
| Msa0420790 | AT4G38960.1 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 6.10e-11 | 61.6 |
| Msa0420790 | AT4G38960.6 | 36.905 | 84 | 45 | 1 | 1 | 76 | 1 | 84 | 6.10e-11 | 61.6 |
| Msa0420790 | AT1G75540.1 | 34.343 | 99 | 52 | 2 | 1 | 86 | 1 | 99 | 8.86e-11 | 63.2 |
Find 92 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGATTTAACAGTTTATT+TGG | 0.095234 | 3_2:+69545700 | Msa0420790:CDS |
| GTGGATTTAACAGTTTATTT+GGG | 0.284402 | 3_2:+69545701 | Msa0420790:CDS |
| CGCGGTTCTTTGCTTGATTC+GGG | 0.298118 | 3_2:-69545255 | None:intergenic |
| AGCTACTGATCTACCTGATT+TGG | 0.310422 | 3_2:+69545203 | Msa0420790:CDS |
| TCATCATCATCACTTGCTTC+AGG | 0.322324 | 3_2:-69545571 | None:intergenic |
| ACGCGGTTCTTTGCTTGATT+CGG | 0.327280 | 3_2:-69545256 | None:intergenic |
| CGGCCGAACTTTCTTCGATA+TGG | 0.346888 | 3_2:+69545052 | Msa0420790:CDS |
| GGATGAAATGGATATAAATA+TGG | 0.347846 | 3_2:+69545618 | Msa0420790:CDS |
| CGATTTCGATATGGATGAAA+TGG | 0.355447 | 3_2:+69545606 | Msa0420790:CDS |
| TACCTTTGGTACACATTCAT+TGG | 0.361210 | 3_2:-69545304 | None:intergenic |
| GATGCTGCAGTGCTGCATGC+TGG | 0.368884 | 3_2:-69546210 | None:intergenic |
| TATGTTCAGGGTTCATCAAT+TGG | 0.370264 | 3_2:+69546168 | Msa0420790:intron |
| ATTATACACTCAGTAGCTTC+TGG | 0.377897 | 3_2:-69546894 | None:intergenic |
| ACCGGCCCTTCACGCGCCTT+CGG | 0.385614 | 3_2:-69546826 | None:intergenic |
| GATCGTTTGCCTCTTATGAT+TGG | 0.395417 | 3_2:-69545004 | None:intergenic |
| CACTTTGTCAGAATTGTGAT+TGG | 0.398736 | 3_2:+69544956 | Msa0420790:CDS |
| TTTGCTTGATTCGGGCTTTG+AGG | 0.401934 | 3_2:-69545247 | None:intergenic |
| ATGCAGTTCACAACCTGCTT+TGG | 0.404101 | 3_2:+69544909 | Msa0420790:CDS |
| CCTCAGCAGCATTAGCATCT+TGG | 0.411307 | 3_2:-69545756 | None:intergenic |
| GTTCACAACCTGCTTTGGTT+AGG | 0.412214 | 3_2:+69544914 | Msa0420790:CDS |
| TAGCTTCTGGTTTGGCTCAA+AGG | 0.415587 | 3_2:-69546881 | None:intergenic |
| ACACTCAGTAGCTTCTGGTT+TGG | 0.416653 | 3_2:-69546889 | None:intergenic |
| CATTCATTGGTAGATCCATC+TGG | 0.421154 | 3_2:-69545291 | None:intergenic |
| AGCTTCTTCAATGCTTCTCA+TGG | 0.422785 | 3_2:+69546359 | Msa0420790:CDS |
| AGCTTCTGGTTTGGCTCAAA+GGG | 0.425533 | 3_2:-69546880 | None:intergenic |
| CTACATCTTCCAATCATAAG+AGG | 0.437225 | 3_2:+69544995 | Msa0420790:CDS |
| CAGAAAAGGAAAGGCTCGAT+TGG | 0.437549 | 3_2:-69546293 | None:intergenic |
| AGCATTAGCATCTTGGCAAT+TGG | 0.442849 | 3_2:-69545749 | None:intergenic |
| TGTCAGAATTGTGATTGGTT+AGG | 0.444655 | 3_2:+69544961 | Msa0420790:CDS |
| GCGAAAGACTTATCCAAATC+AGG | 0.451210 | 3_2:-69545216 | None:intergenic |
| TGTAGTTGTAGCTCATTCTC+AGG | 0.468722 | 3_2:-69546408 | None:intergenic |
| CATCATCATCACTTGCTTCA+GGG | 0.475636 | 3_2:-69545570 | None:intergenic |
| GTCATAATCGTAGGCCTCGC+CGG | 0.482944 | 3_2:-69546858 | None:intergenic |
| TCCGAAGGCGCGTGAAGGGC+CGG | 0.483385 | 3_2:+69546825 | Msa0420790:CDS |
| TTTGCAGTAATACAAAGATT+CGG | 0.484517 | 3_2:-69546264 | None:intergenic |
| GGGGCAAAAGCCATGTCTGC+TGG | 0.484909 | 3_2:+69545721 | Msa0420790:CDS |
| TAATGAGAATAGGAGTGCTT+GGG | 0.485947 | 3_2:+69545143 | Msa0420790:CDS |
| TTCTCATGGGAGAACCTCCT+TGG | 0.487490 | 3_2:+69546373 | Msa0420790:CDS |
| TCATGAGTATTAATGAGAAT+AGG | 0.491713 | 3_2:+69545133 | Msa0420790:CDS |
| TCTGTATGGCGATTTCGATA+TGG | 0.492638 | 3_2:+69545597 | Msa0420790:CDS |
| AGACCATATCGAAGAAAGTT+CGG | 0.494435 | 3_2:-69545055 | None:intergenic |
| GCTTCAGGGCAATTTGTAGC+AGG | 0.495109 | 3_2:-69545556 | None:intergenic |
| AGAAAAGGAAAGGCTCGATT+GGG | 0.501130 | 3_2:-69546292 | None:intergenic |
| TTAATGAGAATAGGAGTGCT+TGG | 0.501567 | 3_2:+69545142 | Msa0420790:CDS |
| ATTAATGAAGACGGTGGTGC+TGG | 0.505210 | 3_2:+69546318 | Msa0420790:CDS |
| GTCTTCATTAATACCAGAAA+AGG | 0.513355 | 3_2:-69546307 | None:intergenic |
| CCCTTGCTCGAAGACATTCA+AGG | 0.516832 | 3_2:+69544869 | Msa0420790:CDS |
| ATATGCCTCTCGCAAGGAAA+GGG | 0.519345 | 3_2:+69546796 | Msa0420790:CDS |
| CAAACGATCAATTGCTACTC+AGG | 0.524349 | 3_2:+69545018 | Msa0420790:CDS |
| CCTCGCCGGCTTTAACAAAC+CGG | 0.526175 | 3_2:-69546844 | None:intergenic |
| ACTACATGTGAGCAAGAACT+AGG | 0.526382 | 3_2:+69545108 | Msa0420790:CDS |
| TTGTGGAGATCAACGGTCCA+TGG | 0.528039 | 3_2:+69544780 | Msa0420790:CDS |
| TCCTTGAATGTCTTCGAGCA+AGG | 0.533062 | 3_2:-69544870 | None:intergenic |
| TTCGGGCTTTGAGGATGTAC+CGG | 0.533096 | 3_2:-69545238 | None:intergenic |
| AAGGGCCGGTTTGTTAAAGC+CGG | 0.538044 | 3_2:+69546839 | Msa0420790:CDS |
| CGTATGCTCGACCGCCCAGA+TGG | 0.548257 | 3_2:+69545276 | Msa0420790:CDS |
| AGATGTCCGAAGGCGCGTGA+AGG | 0.558015 | 3_2:+69546820 | Msa0420790:CDS |
| AATTGTGATTGGTTAGGTCA+TGG | 0.558365 | 3_2:+69544967 | Msa0420790:CDS |
| CTACTCAGGTTGCCCTTCGT+CGG | 0.563208 | 3_2:+69545032 | Msa0420790:CDS |
| ATCTGCCCTTTCCTTGCGAG+AGG | 0.563504 | 3_2:-69546801 | None:intergenic |
| ATTGGAATCTCCAGCAGACA+TGG | 0.566425 | 3_2:-69545731 | None:intergenic |
| GCTTCTTCAATGCTTCTCAT+GGG | 0.566506 | 3_2:+69546360 | Msa0420790:CDS |
| TCAGAACACCTAACCAAAGC+AGG | 0.567607 | 3_2:-69544922 | None:intergenic |
| GATGTCCGAAGGCGCGTGAA+GGG | 0.569243 | 3_2:+69546821 | Msa0420790:CDS |
| AAGAAAGTTCGGCCGACGAA+GGG | 0.569995 | 3_2:-69545044 | None:intergenic |
| CATGTAGTTTCACTCAGAGA+AGG | 0.576596 | 3_2:-69545093 | None:intergenic |
| TAGTGCTGTTATGCGATACA+AGG | 0.579883 | 3_2:+69546446 | Msa0420790:CDS |
| TACCAATGAATGTGTACCAA+AGG | 0.580738 | 3_2:+69545302 | Msa0420790:CDS |
| CCTTGAATGTCTTCGAGCAA+GGG | 0.583830 | 3_2:-69544869 | None:intergenic |
| GATATGCCTCTCGCAAGGAA+AGG | 0.586037 | 3_2:+69546795 | Msa0420790:CDS |
| TGGATTTAACAGTTTATTTG+GGG | 0.588596 | 3_2:+69545702 | Msa0420790:CDS |
| GATTTGGATAAGTCTTTCGC+CGG | 0.589605 | 3_2:+69545219 | Msa0420790:CDS |
| CATTAATACCAGAAAAGGAA+AGG | 0.592524 | 3_2:-69546302 | None:intergenic |
| GAAGAAAGTTCGGCCGACGA+AGG | 0.593920 | 3_2:-69545045 | None:intergenic |
| ATGTAGTTTCACTCAGAGAA+GGG | 0.599442 | 3_2:-69545092 | None:intergenic |
| CCAAGATGCTAATGCTGCTG+AGG | 0.599606 | 3_2:+69545756 | Msa0420790:CDS |
| AGGAAAGGGCAGATGTCCGA+AGG | 0.608225 | 3_2:+69546810 | Msa0420790:CDS |
| GCTCAAAGGGTCATAATCGT+AGG | 0.609995 | 3_2:-69546867 | None:intergenic |
| ATTCATTGGTAGATCCATCT+GGG | 0.610627 | 3_2:-69545290 | None:intergenic |
| AAAGCTCTTCAGAATGAGTG+AGG | 0.617795 | 3_2:-69545669 | None:intergenic |
| AGTGAGATATGCCTCTCGCA+AGG | 0.618457 | 3_2:+69546790 | Msa0420790:CDS |
| GCTGGAGACTATCAAGATTG+TGG | 0.619737 | 3_2:+69546336 | Msa0420790:CDS |
| TCTGGTATTAATGAAGACGG+TGG | 0.629157 | 3_2:+69546312 | Msa0420790:CDS |
| TCAGGACATGTGTTTAACCA+AGG | 0.635746 | 3_2:-69546390 | None:intergenic |
| CCGGTTTGTTAAAGCCGGCG+AGG | 0.638136 | 3_2:+69546844 | Msa0420790:CDS |
| GGTGTACTGTCGCTCAGATG+CGG | 0.641096 | 3_2:+69544801 | Msa0420790:CDS |
| TCTGGGCGGTCGAGCATACG+CGG | 0.641340 | 3_2:-69545273 | None:intergenic |
| AAGCTCTTCAGAATGAGTGA+GGG | 0.667176 | 3_2:-69545668 | None:intergenic |
| GGACATGTGTTTAACCAAGG+AGG | 0.698616 | 3_2:-69546387 | None:intergenic |
| ATCGCATAACAGCACTACAG+CGG | 0.734007 | 3_2:-69546440 | None:intergenic |
| ATCTGAGCGACAGTACACCA+TGG | 0.755518 | 3_2:-69544797 | None:intergenic |
| CATTGGTAGATCCATCTGGG+CGG | 0.761162 | 3_2:-69545287 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAATTTGATAAAAATGTA+AGG | - | chr3_2:69545500-69545519 | None:intergenic | 15.0% |
| !!! | ATTGATTGTTATTATCTTTT+AGG | + | chr3_2:69546756-69546775 | Msa0420790:intron | 15.0% |
| !! | TCTAATTTGATAAAAATGTA+AGG | - | chr3_2:69545500-69545519 | None:intergenic | 15.0% |
| !!! | ATTGATTGTTATTATCTTTT+AGG | + | chr3_2:69546756-69546775 | Msa0420790:intron | 15.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | - | chr3_2:69545923-69545942 | None:intergenic | 20.0% |
| !!! | TACATCTAATTTTTATGTTC+AGG | + | chr3_2:69546155-69546174 | Msa0420790:intron | 20.0% |
| !!! | ACATCTAATTTTTATGTTCA+GGG | + | chr3_2:69546156-69546175 | Msa0420790:intron | 20.0% |
| !!! | TCAGATCTTATATCTTTTAA+GGG | - | chr3_2:69546581-69546600 | None:intergenic | 20.0% |
| !!! | TTCAGATCTTATATCTTTTA+AGG | - | chr3_2:69546582-69546601 | None:intergenic | 20.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | - | chr3_2:69545923-69545942 | None:intergenic | 20.0% |
| !!! | TACATCTAATTTTTATGTTC+AGG | + | chr3_2:69546155-69546174 | Msa0420790:intron | 20.0% |
| !!! | ACATCTAATTTTTATGTTCA+GGG | + | chr3_2:69546156-69546175 | Msa0420790:intron | 20.0% |
| !!! | TCAGATCTTATATCTTTTAA+GGG | - | chr3_2:69546581-69546600 | None:intergenic | 20.0% |
| !!! | TTCAGATCTTATATCTTTTA+AGG | - | chr3_2:69546582-69546601 | None:intergenic | 20.0% |
| ! | TCATGAGTATTAATGAGAAT+AGG | + | chr3_2:69545133-69545152 | Msa0420790:CDS | 25.0% |
| ! | AACATTCAGATATATACCTT+TGG | - | chr3_2:69545321-69545340 | None:intergenic | 25.0% |
| ! | GGATGAAATGGATATAAATA+TGG | + | chr3_2:69545618-69545637 | Msa0420790:CDS | 25.0% |
| ! | GTGGATTTAACAGTTTATTT+GGG | + | chr3_2:69545701-69545720 | Msa0420790:CDS | 25.0% |
| ! | TGGATTTAACAGTTTATTTG+GGG | + | chr3_2:69545702-69545721 | Msa0420790:CDS | 25.0% |
| ! | TTATATATTAGCATAAGCAC+TGG | + | chr3_2:69545854-69545873 | Msa0420790:intron | 25.0% |
| ! | ATACAAATTGTTTACACCTT+CGG | + | chr3_2:69546105-69546124 | Msa0420790:intron | 25.0% |
| ! | TTTGCAGTAATACAAAGATT+CGG | - | chr3_2:69546267-69546286 | None:intergenic | 25.0% |
| !!! | TTTTCTGGTATTAATGAAGA+CGG | + | chr3_2:69546309-69546328 | Msa0420790:CDS | 25.0% |
| ! | TCATGAGTATTAATGAGAAT+AGG | + | chr3_2:69545133-69545152 | Msa0420790:CDS | 25.0% |
| ! | AACATTCAGATATATACCTT+TGG | - | chr3_2:69545321-69545340 | None:intergenic | 25.0% |
| ! | GGATGAAATGGATATAAATA+TGG | + | chr3_2:69545618-69545637 | Msa0420790:CDS | 25.0% |
| ! | GTGGATTTAACAGTTTATTT+GGG | + | chr3_2:69545701-69545720 | Msa0420790:CDS | 25.0% |
| ! | TGGATTTAACAGTTTATTTG+GGG | + | chr3_2:69545702-69545721 | Msa0420790:CDS | 25.0% |
| ! | TTATATATTAGCATAAGCAC+TGG | + | chr3_2:69545854-69545873 | Msa0420790:intron | 25.0% |
| ! | ATACAAATTGTTTACACCTT+CGG | + | chr3_2:69546105-69546124 | Msa0420790:intron | 25.0% |
| ! | TTTGCAGTAATACAAAGATT+CGG | - | chr3_2:69546267-69546286 | None:intergenic | 25.0% |
| !!! | TTTTCTGGTATTAATGAAGA+CGG | + | chr3_2:69546309-69546328 | Msa0420790:CDS | 25.0% |
| ! | GGTTACATATGTGATTTTTG+TGG | + | chr3_2:69544763-69544782 | Msa0420790:CDS | 30.0% |
| ATGATTAAGCTATTGCTCTA+TGG | - | chr3_2:69545395-69545414 | None:intergenic | 30.0% | |
| TAGAGCAATAGCTTAATCAT+TGG | + | chr3_2:69545395-69545414 | Msa0420790:intron | 30.0% | |
| GGATTTCAATTATAAACCTC+AGG | - | chr3_2:69545479-69545498 | None:intergenic | 30.0% | |
| ! | GAGAACTATGATGAACTTTT+TGG | + | chr3_2:69545640-69545659 | Msa0420790:CDS | 30.0% |
| !! | CTATGATGAACTTTTTGGTA+TGG | + | chr3_2:69545645-69545664 | Msa0420790:CDS | 30.0% |
| !! | TCTGAAGAGCTTTTTGAAAA+TGG | + | chr3_2:69545679-69545698 | Msa0420790:CDS | 30.0% |
| ! | GGTGGATTTAACAGTTTATT+TGG | + | chr3_2:69545700-69545719 | Msa0420790:CDS | 30.0% |
| ACGCAATCAAATGATAGAAA+AGG | - | chr3_2:69545820-69545839 | None:intergenic | 30.0% | |
| TTTCTATCATTTGATTGCGT+TGG | + | chr3_2:69545820-69545839 | Msa0420790:intron | 30.0% | |
| ! | CTGTTTTCATAAGCTTATCT+TGG | - | chr3_2:69545958-69545977 | None:intergenic | 30.0% |
| !! | TTCAGTTTTAGTGCTCAATA+TGG | - | chr3_2:69546244-69546263 | None:intergenic | 30.0% |
| CATTAATACCAGAAAAGGAA+AGG | - | chr3_2:69546305-69546324 | None:intergenic | 30.0% | |
| GTCTTCATTAATACCAGAAA+AGG | - | chr3_2:69546310-69546329 | None:intergenic | 30.0% | |
| AGAGGAAAAACACATTCATT+AGG | - | chr3_2:69546544-69546563 | None:intergenic | 30.0% | |
| ! | ATGAATGTGTTTTTCCTCTT+TGG | + | chr3_2:69546545-69546564 | Msa0420790:intron | 30.0% |
| ! | TGAATGTGTTTTTCCTCTTT+GGG | + | chr3_2:69546546-69546565 | Msa0420790:intron | 30.0% |
| TGAAAAGAGTTTCTAAACAG+TGG | + | chr3_2:69546598-69546617 | Msa0420790:intron | 30.0% | |
| ! | GGTTACATATGTGATTTTTG+TGG | + | chr3_2:69544763-69544782 | Msa0420790:CDS | 30.0% |
| ATGATTAAGCTATTGCTCTA+TGG | - | chr3_2:69545395-69545414 | None:intergenic | 30.0% | |
| TAGAGCAATAGCTTAATCAT+TGG | + | chr3_2:69545395-69545414 | Msa0420790:intron | 30.0% | |
| GGATTTCAATTATAAACCTC+AGG | - | chr3_2:69545479-69545498 | None:intergenic | 30.0% | |
| ! | GAGAACTATGATGAACTTTT+TGG | + | chr3_2:69545640-69545659 | Msa0420790:CDS | 30.0% |
| !! | CTATGATGAACTTTTTGGTA+TGG | + | chr3_2:69545645-69545664 | Msa0420790:CDS | 30.0% |
| !! | TCTGAAGAGCTTTTTGAAAA+TGG | + | chr3_2:69545679-69545698 | Msa0420790:CDS | 30.0% |
| ! | GGTGGATTTAACAGTTTATT+TGG | + | chr3_2:69545700-69545719 | Msa0420790:CDS | 30.0% |
| ACGCAATCAAATGATAGAAA+AGG | - | chr3_2:69545820-69545839 | None:intergenic | 30.0% | |
| TTTCTATCATTTGATTGCGT+TGG | + | chr3_2:69545820-69545839 | Msa0420790:intron | 30.0% | |
| ! | CTGTTTTCATAAGCTTATCT+TGG | - | chr3_2:69545958-69545977 | None:intergenic | 30.0% |
| !! | TTCAGTTTTAGTGCTCAATA+TGG | - | chr3_2:69546244-69546263 | None:intergenic | 30.0% |
| CATTAATACCAGAAAAGGAA+AGG | - | chr3_2:69546305-69546324 | None:intergenic | 30.0% | |
| GTCTTCATTAATACCAGAAA+AGG | - | chr3_2:69546310-69546329 | None:intergenic | 30.0% | |
| AGAGGAAAAACACATTCATT+AGG | - | chr3_2:69546544-69546563 | None:intergenic | 30.0% | |
| ! | ATGAATGTGTTTTTCCTCTT+TGG | + | chr3_2:69546545-69546564 | Msa0420790:intron | 30.0% |
| ! | TGAATGTGTTTTTCCTCTTT+GGG | + | chr3_2:69546546-69546565 | Msa0420790:intron | 30.0% |
| TGAAAAGAGTTTCTAAACAG+TGG | + | chr3_2:69546598-69546617 | Msa0420790:intron | 30.0% | |
| ! | GTGATTTTTGTGGAGATCAA+CGG | + | chr3_2:69544773-69544792 | Msa0420790:CDS | 35.0% |
| CACTTTGTCAGAATTGTGAT+TGG | + | chr3_2:69544956-69544975 | Msa0420790:CDS | 35.0% | |
| ! | TGTCAGAATTGTGATTGGTT+AGG | + | chr3_2:69544961-69544980 | Msa0420790:CDS | 35.0% |
| ! | AATTGTGATTGGTTAGGTCA+TGG | + | chr3_2:69544967-69544986 | Msa0420790:CDS | 35.0% |
| CTACATCTTCCAATCATAAG+AGG | + | chr3_2:69544995-69545014 | Msa0420790:CDS | 35.0% | |
| AGACCATATCGAAGAAAGTT+CGG | - | chr3_2:69545058-69545077 | None:intergenic | 35.0% | |
| ATGTAGTTTCACTCAGAGAA+GGG | - | chr3_2:69545095-69545114 | None:intergenic | 35.0% | |
| !! | TTAATGAGAATAGGAGTGCT+TGG | + | chr3_2:69545142-69545161 | Msa0420790:CDS | 35.0% |
| !! | TAATGAGAATAGGAGTGCTT+GGG | + | chr3_2:69545143-69545162 | Msa0420790:CDS | 35.0% |
| ! | TCAGACACGTTCTGATTTTT+CGG | - | chr3_2:69545174-69545193 | None:intergenic | 35.0% |
| ATTCATTGGTAGATCCATCT+GGG | - | chr3_2:69545293-69545312 | None:intergenic | 35.0% | |
| TACCAATGAATGTGTACCAA+AGG | + | chr3_2:69545302-69545321 | Msa0420790:CDS | 35.0% | |
| TACCTTTGGTACACATTCAT+TGG | - | chr3_2:69545307-69545326 | None:intergenic | 35.0% | |
| !! | AACTCTCATTGTTGATTTCC+AGG | + | chr3_2:69545525-69545544 | Msa0420790:intron | 35.0% |
| ! | GATGATGATGATGATCTGTA+TGG | + | chr3_2:69545583-69545602 | Msa0420790:CDS | 35.0% |
| CGATTTCGATATGGATGAAA+TGG | + | chr3_2:69545606-69545625 | Msa0420790:CDS | 35.0% | |
| !! | GAAGAGCTTTTTGAAAATGG+TGG | + | chr3_2:69545682-69545701 | Msa0420790:CDS | 35.0% |
| AGCTTATCTTGGAGAACTTA+TGG | - | chr3_2:69545947-69545966 | None:intergenic | 35.0% | |
| TAGTAGACATAAGCTCTGTT+TGG | - | chr3_2:69546066-69546085 | None:intergenic | 35.0% | |
| ACAGAGCTTATGTCTACTAT+TGG | + | chr3_2:69546067-69546086 | Msa0420790:intron | 35.0% | |
| CTCTACTTAAAATCAACCGA+AGG | - | chr3_2:69546124-69546143 | None:intergenic | 35.0% | |
| TATGTTCAGGGTTCATCAAT+TGG | + | chr3_2:69546168-69546187 | Msa0420790:intron | 35.0% | |
| GCATTACTCACTTTACTAAC+TGG | + | chr3_2:69546620-69546639 | Msa0420790:intron | 35.0% | |
| TGCTAACAAGCTAGGAATTA+CGG | + | chr3_2:69546682-69546701 | Msa0420790:intron | 35.0% | |
| ! | GTGATTTTTGTGGAGATCAA+CGG | + | chr3_2:69544773-69544792 | Msa0420790:CDS | 35.0% |
| CACTTTGTCAGAATTGTGAT+TGG | + | chr3_2:69544956-69544975 | Msa0420790:CDS | 35.0% | |
| ! | TGTCAGAATTGTGATTGGTT+AGG | + | chr3_2:69544961-69544980 | Msa0420790:CDS | 35.0% |
| ! | AATTGTGATTGGTTAGGTCA+TGG | + | chr3_2:69544967-69544986 | Msa0420790:CDS | 35.0% |
| CTACATCTTCCAATCATAAG+AGG | + | chr3_2:69544995-69545014 | Msa0420790:CDS | 35.0% | |
| AGACCATATCGAAGAAAGTT+CGG | - | chr3_2:69545058-69545077 | None:intergenic | 35.0% | |
| ATGTAGTTTCACTCAGAGAA+GGG | - | chr3_2:69545095-69545114 | None:intergenic | 35.0% | |
| !! | TTAATGAGAATAGGAGTGCT+TGG | + | chr3_2:69545142-69545161 | Msa0420790:CDS | 35.0% |
| !! | TAATGAGAATAGGAGTGCTT+GGG | + | chr3_2:69545143-69545162 | Msa0420790:CDS | 35.0% |
| ! | TCAGACACGTTCTGATTTTT+CGG | - | chr3_2:69545174-69545193 | None:intergenic | 35.0% |
| ATTCATTGGTAGATCCATCT+GGG | - | chr3_2:69545293-69545312 | None:intergenic | 35.0% | |
| TACCAATGAATGTGTACCAA+AGG | + | chr3_2:69545302-69545321 | Msa0420790:CDS | 35.0% | |
| TACCTTTGGTACACATTCAT+TGG | - | chr3_2:69545307-69545326 | None:intergenic | 35.0% | |
| !! | AACTCTCATTGTTGATTTCC+AGG | + | chr3_2:69545525-69545544 | Msa0420790:intron | 35.0% |
| ! | GATGATGATGATGATCTGTA+TGG | + | chr3_2:69545583-69545602 | Msa0420790:CDS | 35.0% |
| CGATTTCGATATGGATGAAA+TGG | + | chr3_2:69545606-69545625 | Msa0420790:CDS | 35.0% | |
| !! | GAAGAGCTTTTTGAAAATGG+TGG | + | chr3_2:69545682-69545701 | Msa0420790:CDS | 35.0% |
| AGCTTATCTTGGAGAACTTA+TGG | - | chr3_2:69545947-69545966 | None:intergenic | 35.0% | |
| TAGTAGACATAAGCTCTGTT+TGG | - | chr3_2:69546066-69546085 | None:intergenic | 35.0% | |
| ACAGAGCTTATGTCTACTAT+TGG | + | chr3_2:69546067-69546086 | Msa0420790:intron | 35.0% | |
| CTCTACTTAAAATCAACCGA+AGG | - | chr3_2:69546124-69546143 | None:intergenic | 35.0% | |
| TATGTTCAGGGTTCATCAAT+TGG | + | chr3_2:69546168-69546187 | Msa0420790:intron | 35.0% | |
| GCATTACTCACTTTACTAAC+TGG | + | chr3_2:69546620-69546639 | Msa0420790:intron | 35.0% | |
| TGCTAACAAGCTAGGAATTA+CGG | + | chr3_2:69546682-69546701 | Msa0420790:intron | 35.0% | |
| GATCGTTTGCCTCTTATGAT+TGG | - | chr3_2:69545007-69545026 | None:intergenic | 40.0% | |
| CAAACGATCAATTGCTACTC+AGG | + | chr3_2:69545018-69545037 | Msa0420790:CDS | 40.0% | |
| CATGTAGTTTCACTCAGAGA+AGG | - | chr3_2:69545096-69545115 | None:intergenic | 40.0% | |
| ACTACATGTGAGCAAGAACT+AGG | + | chr3_2:69545108-69545127 | Msa0420790:CDS | 40.0% | |
| AGCTACTGATCTACCTGATT+TGG | + | chr3_2:69545203-69545222 | Msa0420790:CDS | 40.0% | |
| GCGAAAGACTTATCCAAATC+AGG | - | chr3_2:69545219-69545238 | None:intergenic | 40.0% | |
| GATTTGGATAAGTCTTTCGC+CGG | + | chr3_2:69545219-69545238 | Msa0420790:CDS | 40.0% | |
| CATTCATTGGTAGATCCATC+TGG | - | chr3_2:69545294-69545313 | None:intergenic | 40.0% | |
| TAAACGAGTTTCACTACCTG+AGG | + | chr3_2:69545460-69545479 | Msa0420790:intron | 40.0% | |
| CATCATCATCACTTGCTTCA+GGG | - | chr3_2:69545573-69545592 | None:intergenic | 40.0% | |
| TCATCATCATCACTTGCTTC+AGG | - | chr3_2:69545574-69545593 | None:intergenic | 40.0% | |
| TCTGTATGGCGATTTCGATA+TGG | + | chr3_2:69545597-69545616 | Msa0420790:CDS | 40.0% | |
| AAGCTCTTCAGAATGAGTGA+GGG | - | chr3_2:69545671-69545690 | None:intergenic | 40.0% | |
| AAAGCTCTTCAGAATGAGTG+AGG | - | chr3_2:69545672-69545691 | None:intergenic | 40.0% | |
| AGCATTAGCATCTTGGCAAT+TGG | - | chr3_2:69545752-69545771 | None:intergenic | 40.0% | |
| AGAAAAGGAAAGGCTCGATT+GGG | - | chr3_2:69546295-69546314 | None:intergenic | 40.0% | |
| TCTGGTATTAATGAAGACGG+TGG | + | chr3_2:69546312-69546331 | Msa0420790:CDS | 40.0% | |
| AGCTTCTTCAATGCTTCTCA+TGG | + | chr3_2:69546359-69546378 | Msa0420790:CDS | 40.0% | |
| GCTTCTTCAATGCTTCTCAT+GGG | + | chr3_2:69546360-69546379 | Msa0420790:CDS | 40.0% | |
| TCAGGACATGTGTTTAACCA+AGG | - | chr3_2:69546393-69546412 | None:intergenic | 40.0% | |
| TGTAGTTGTAGCTCATTCTC+AGG | - | chr3_2:69546411-69546430 | None:intergenic | 40.0% | |
| ! | TAGTGCTGTTATGCGATACA+AGG | + | chr3_2:69546446-69546465 | Msa0420790:CDS | 40.0% |
| !! | TCCTAGCTTGTTAGCAAAGA+CGG | - | chr3_2:69546678-69546697 | None:intergenic | 40.0% |
| GCTAACAAGCTAGGAATTAC+GGG | + | chr3_2:69546683-69546702 | Msa0420790:intron | 40.0% | |
| GATCGTTTGCCTCTTATGAT+TGG | - | chr3_2:69545007-69545026 | None:intergenic | 40.0% | |
| CAAACGATCAATTGCTACTC+AGG | + | chr3_2:69545018-69545037 | Msa0420790:CDS | 40.0% | |
| CATGTAGTTTCACTCAGAGA+AGG | - | chr3_2:69545096-69545115 | None:intergenic | 40.0% | |
| ACTACATGTGAGCAAGAACT+AGG | + | chr3_2:69545108-69545127 | Msa0420790:CDS | 40.0% | |
| AGCTACTGATCTACCTGATT+TGG | + | chr3_2:69545203-69545222 | Msa0420790:CDS | 40.0% | |
| GCGAAAGACTTATCCAAATC+AGG | - | chr3_2:69545219-69545238 | None:intergenic | 40.0% | |
| GATTTGGATAAGTCTTTCGC+CGG | + | chr3_2:69545219-69545238 | Msa0420790:CDS | 40.0% | |
| CATTCATTGGTAGATCCATC+TGG | - | chr3_2:69545294-69545313 | None:intergenic | 40.0% | |
| TAAACGAGTTTCACTACCTG+AGG | + | chr3_2:69545460-69545479 | Msa0420790:intron | 40.0% | |
| CATCATCATCACTTGCTTCA+GGG | - | chr3_2:69545573-69545592 | None:intergenic | 40.0% | |
| TCATCATCATCACTTGCTTC+AGG | - | chr3_2:69545574-69545593 | None:intergenic | 40.0% | |
| TCTGTATGGCGATTTCGATA+TGG | + | chr3_2:69545597-69545616 | Msa0420790:CDS | 40.0% | |
| AAGCTCTTCAGAATGAGTGA+GGG | - | chr3_2:69545671-69545690 | None:intergenic | 40.0% | |
| AAAGCTCTTCAGAATGAGTG+AGG | - | chr3_2:69545672-69545691 | None:intergenic | 40.0% | |
| AGCATTAGCATCTTGGCAAT+TGG | - | chr3_2:69545752-69545771 | None:intergenic | 40.0% | |
| AGAAAAGGAAAGGCTCGATT+GGG | - | chr3_2:69546295-69546314 | None:intergenic | 40.0% | |
| TCTGGTATTAATGAAGACGG+TGG | + | chr3_2:69546312-69546331 | Msa0420790:CDS | 40.0% | |
| AGCTTCTTCAATGCTTCTCA+TGG | + | chr3_2:69546359-69546378 | Msa0420790:CDS | 40.0% | |
| GCTTCTTCAATGCTTCTCAT+GGG | + | chr3_2:69546360-69546379 | Msa0420790:CDS | 40.0% | |
| TCAGGACATGTGTTTAACCA+AGG | - | chr3_2:69546393-69546412 | None:intergenic | 40.0% | |
| TGTAGTTGTAGCTCATTCTC+AGG | - | chr3_2:69546411-69546430 | None:intergenic | 40.0% | |
| ! | TAGTGCTGTTATGCGATACA+AGG | + | chr3_2:69546446-69546465 | Msa0420790:CDS | 40.0% |
| !! | TCCTAGCTTGTTAGCAAAGA+CGG | - | chr3_2:69546678-69546697 | None:intergenic | 40.0% |
| GCTAACAAGCTAGGAATTAC+GGG | + | chr3_2:69546683-69546702 | Msa0420790:intron | 40.0% | |
| CCTTGAATGTCTTCGAGCAA+GGG | - | chr3_2:69544872-69544891 | None:intergenic | 45.0% | |
| TCCTTGAATGTCTTCGAGCA+AGG | - | chr3_2:69544873-69544892 | None:intergenic | 45.0% | |
| ATGCAGTTCACAACCTGCTT+TGG | + | chr3_2:69544909-69544928 | Msa0420790:CDS | 45.0% | |
| GTTCACAACCTGCTTTGGTT+AGG | + | chr3_2:69544914-69544933 | Msa0420790:CDS | 45.0% | |
| TCAGAACACCTAACCAAAGC+AGG | - | chr3_2:69544925-69544944 | None:intergenic | 45.0% | |
| !! | TTTGCTTGATTCGGGCTTTG+AGG | - | chr3_2:69545250-69545269 | None:intergenic | 45.0% |
| ACGCGGTTCTTTGCTTGATT+CGG | - | chr3_2:69545259-69545278 | None:intergenic | 45.0% | |
| AGCTTAATCATTGGCGAAGC+AGG | + | chr3_2:69545404-69545423 | Msa0420790:intron | 45.0% | |
| TTGTAGCAGGACAGTATACC+TGG | - | chr3_2:69545546-69545565 | None:intergenic | 45.0% | |
| ATTGGAATCTCCAGCAGACA+TGG | - | chr3_2:69545734-69545753 | None:intergenic | 45.0% | |
| !! | TAAGCACTGGTGAGACTGTT+TGG | + | chr3_2:69545867-69545886 | Msa0420790:intron | 45.0% |
| !! | AAGCACTGGTGAGACTGTTT+GGG | + | chr3_2:69545868-69545887 | Msa0420790:intron | 45.0% |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr3_2:69545879-69545898 | Msa0420790:intron | 45.0% | |
| CAGAAAAGGAAAGGCTCGAT+TGG | - | chr3_2:69546296-69546315 | None:intergenic | 45.0% | |
| ! | CAATCGAGCCTTTCCTTTTC+TGG | + | chr3_2:69546294-69546313 | Msa0420790:CDS | 45.0% |
| ATTAATGAAGACGGTGGTGC+TGG | + | chr3_2:69546318-69546337 | Msa0420790:CDS | 45.0% | |
| GCTGGAGACTATCAAGATTG+TGG | + | chr3_2:69546336-69546355 | Msa0420790:CDS | 45.0% | |
| GGACATGTGTTTAACCAAGG+AGG | - | chr3_2:69546390-69546409 | None:intergenic | 45.0% | |
| ATCGCATAACAGCACTACAG+CGG | - | chr3_2:69546443-69546462 | None:intergenic | 45.0% | |
| AGGGAAGTTCATTCCCAAAG+AGG | - | chr3_2:69546562-69546581 | None:intergenic | 45.0% | |
| ACCGTCTTTGCTAACAAGCT+AGG | + | chr3_2:69546674-69546693 | Msa0420790:intron | 45.0% | |
| ATATGCCTCTCGCAAGGAAA+GGG | + | chr3_2:69546796-69546815 | Msa0420790:CDS | 45.0% | |
| GCTCAAAGGGTCATAATCGT+AGG | - | chr3_2:69546870-69546889 | None:intergenic | 45.0% | |
| !! | AGCTTCTGGTTTGGCTCAAA+GGG | - | chr3_2:69546883-69546902 | None:intergenic | 45.0% |
| !! | TAGCTTCTGGTTTGGCTCAA+AGG | - | chr3_2:69546884-69546903 | None:intergenic | 45.0% |
| CCTTGAATGTCTTCGAGCAA+GGG | - | chr3_2:69544872-69544891 | None:intergenic | 45.0% | |
| TCCTTGAATGTCTTCGAGCA+AGG | - | chr3_2:69544873-69544892 | None:intergenic | 45.0% | |
| ATGCAGTTCACAACCTGCTT+TGG | + | chr3_2:69544909-69544928 | Msa0420790:CDS | 45.0% | |
| GTTCACAACCTGCTTTGGTT+AGG | + | chr3_2:69544914-69544933 | Msa0420790:CDS | 45.0% | |
| TCAGAACACCTAACCAAAGC+AGG | - | chr3_2:69544925-69544944 | None:intergenic | 45.0% | |
| !! | TTTGCTTGATTCGGGCTTTG+AGG | - | chr3_2:69545250-69545269 | None:intergenic | 45.0% |
| ACGCGGTTCTTTGCTTGATT+CGG | - | chr3_2:69545259-69545278 | None:intergenic | 45.0% | |
| AGCTTAATCATTGGCGAAGC+AGG | + | chr3_2:69545404-69545423 | Msa0420790:intron | 45.0% | |
| TTGTAGCAGGACAGTATACC+TGG | - | chr3_2:69545546-69545565 | None:intergenic | 45.0% | |
| ATTGGAATCTCCAGCAGACA+TGG | - | chr3_2:69545734-69545753 | None:intergenic | 45.0% | |
| !! | TAAGCACTGGTGAGACTGTT+TGG | + | chr3_2:69545867-69545886 | Msa0420790:intron | 45.0% |
| !! | AAGCACTGGTGAGACTGTTT+GGG | + | chr3_2:69545868-69545887 | Msa0420790:intron | 45.0% |
| AGACTGTTTGGGAGAGCTTA+TGG | + | chr3_2:69545879-69545898 | Msa0420790:intron | 45.0% | |
| CAGAAAAGGAAAGGCTCGAT+TGG | - | chr3_2:69546296-69546315 | None:intergenic | 45.0% | |
| ! | CAATCGAGCCTTTCCTTTTC+TGG | + | chr3_2:69546294-69546313 | Msa0420790:CDS | 45.0% |
| ATTAATGAAGACGGTGGTGC+TGG | + | chr3_2:69546318-69546337 | Msa0420790:CDS | 45.0% | |
| GCTGGAGACTATCAAGATTG+TGG | + | chr3_2:69546336-69546355 | Msa0420790:CDS | 45.0% | |
| GGACATGTGTTTAACCAAGG+AGG | - | chr3_2:69546390-69546409 | None:intergenic | 45.0% | |
| ATCGCATAACAGCACTACAG+CGG | - | chr3_2:69546443-69546462 | None:intergenic | 45.0% | |
| AGGGAAGTTCATTCCCAAAG+AGG | - | chr3_2:69546562-69546581 | None:intergenic | 45.0% | |
| ACCGTCTTTGCTAACAAGCT+AGG | + | chr3_2:69546674-69546693 | Msa0420790:intron | 45.0% | |
| ATATGCCTCTCGCAAGGAAA+GGG | + | chr3_2:69546796-69546815 | Msa0420790:CDS | 45.0% | |
| GCTCAAAGGGTCATAATCGT+AGG | - | chr3_2:69546870-69546889 | None:intergenic | 45.0% | |
| !! | AGCTTCTGGTTTGGCTCAAA+GGG | - | chr3_2:69546883-69546902 | None:intergenic | 45.0% |
| !! | TAGCTTCTGGTTTGGCTCAA+AGG | - | chr3_2:69546884-69546903 | None:intergenic | 45.0% |
| TTGTGGAGATCAACGGTCCA+TGG | + | chr3_2:69544780-69544799 | Msa0420790:CDS | 50.0% | |
| ATCTGAGCGACAGTACACCA+TGG | - | chr3_2:69544800-69544819 | None:intergenic | 50.0% | |
| CCCTTGCTCGAAGACATTCA+AGG | + | chr3_2:69544869-69544888 | Msa0420790:CDS | 50.0% | |
| AAGAAAGTTCGGCCGACGAA+GGG | - | chr3_2:69545047-69545066 | None:intergenic | 50.0% | |
| CGGCCGAACTTTCTTCGATA+TGG | + | chr3_2:69545052-69545071 | Msa0420790:CDS | 50.0% | |
| !! | TTCGGGCTTTGAGGATGTAC+CGG | - | chr3_2:69545241-69545260 | None:intergenic | 50.0% |
| CGCGGTTCTTTGCTTGATTC+GGG | - | chr3_2:69545258-69545277 | None:intergenic | 50.0% | |
| CATTGGTAGATCCATCTGGG+CGG | - | chr3_2:69545290-69545309 | None:intergenic | 50.0% | |
| GCTTCAGGGCAATTTGTAGC+AGG | - | chr3_2:69545559-69545578 | None:intergenic | 50.0% | |
| CCTCAGCAGCATTAGCATCT+TGG | - | chr3_2:69545759-69545778 | None:intergenic | 50.0% | |
| CCAAGATGCTAATGCTGCTG+AGG | + | chr3_2:69545756-69545775 | Msa0420790:CDS | 50.0% | |
| TTCTCATGGGAGAACCTCCT+TGG | + | chr3_2:69546373-69546392 | Msa0420790:CDS | 50.0% | |
| AGTGAGATATGCCTCTCGCA+AGG | + | chr3_2:69546790-69546809 | Msa0420790:CDS | 50.0% | |
| GATATGCCTCTCGCAAGGAA+AGG | + | chr3_2:69546795-69546814 | Msa0420790:CDS | 50.0% | |
| !! | AAGGGCCGGTTTGTTAAAGC+CGG | + | chr3_2:69546839-69546858 | Msa0420790:CDS | 50.0% |
| TTGTGGAGATCAACGGTCCA+TGG | + | chr3_2:69544780-69544799 | Msa0420790:CDS | 50.0% | |
| ATCTGAGCGACAGTACACCA+TGG | - | chr3_2:69544800-69544819 | None:intergenic | 50.0% | |
| CCCTTGCTCGAAGACATTCA+AGG | + | chr3_2:69544869-69544888 | Msa0420790:CDS | 50.0% | |
| AAGAAAGTTCGGCCGACGAA+GGG | - | chr3_2:69545047-69545066 | None:intergenic | 50.0% | |
| CGGCCGAACTTTCTTCGATA+TGG | + | chr3_2:69545052-69545071 | Msa0420790:CDS | 50.0% | |
| !! | TTCGGGCTTTGAGGATGTAC+CGG | - | chr3_2:69545241-69545260 | None:intergenic | 50.0% |
| CGCGGTTCTTTGCTTGATTC+GGG | - | chr3_2:69545258-69545277 | None:intergenic | 50.0% | |
| CATTGGTAGATCCATCTGGG+CGG | - | chr3_2:69545290-69545309 | None:intergenic | 50.0% | |
| GCTTCAGGGCAATTTGTAGC+AGG | - | chr3_2:69545559-69545578 | None:intergenic | 50.0% | |
| CCTCAGCAGCATTAGCATCT+TGG | - | chr3_2:69545759-69545778 | None:intergenic | 50.0% | |
| CCAAGATGCTAATGCTGCTG+AGG | + | chr3_2:69545756-69545775 | Msa0420790:CDS | 50.0% | |
| TTCTCATGGGAGAACCTCCT+TGG | + | chr3_2:69546373-69546392 | Msa0420790:CDS | 50.0% | |
| AGTGAGATATGCCTCTCGCA+AGG | + | chr3_2:69546790-69546809 | Msa0420790:CDS | 50.0% | |
| GATATGCCTCTCGCAAGGAA+AGG | + | chr3_2:69546795-69546814 | Msa0420790:CDS | 50.0% | |
| !! | AAGGGCCGGTTTGTTAAAGC+CGG | + | chr3_2:69546839-69546858 | Msa0420790:CDS | 50.0% |
| GGTGTACTGTCGCTCAGATG+CGG | + | chr3_2:69544801-69544820 | Msa0420790:CDS | 55.0% | |
| ! | CTACTCAGGTTGCCCTTCGT+CGG | + | chr3_2:69545032-69545051 | Msa0420790:CDS | 55.0% |
| GAAGAAAGTTCGGCCGACGA+AGG | - | chr3_2:69545048-69545067 | None:intergenic | 55.0% | |
| ATCTGCCCTTTCCTTGCGAG+AGG | - | chr3_2:69546804-69546823 | None:intergenic | 55.0% | |
| AGGAAAGGGCAGATGTCCGA+AGG | + | chr3_2:69546810-69546829 | Msa0420790:CDS | 55.0% | |
| !! | CCTCGCCGGCTTTAACAAAC+CGG | - | chr3_2:69546847-69546866 | None:intergenic | 55.0% |
| GTCATAATCGTAGGCCTCGC+CGG | - | chr3_2:69546861-69546880 | None:intergenic | 55.0% | |
| GGTGTACTGTCGCTCAGATG+CGG | + | chr3_2:69544801-69544820 | Msa0420790:CDS | 55.0% | |
| ! | CTACTCAGGTTGCCCTTCGT+CGG | + | chr3_2:69545032-69545051 | Msa0420790:CDS | 55.0% |
| GAAGAAAGTTCGGCCGACGA+AGG | - | chr3_2:69545048-69545067 | None:intergenic | 55.0% | |
| ATCTGCCCTTTCCTTGCGAG+AGG | - | chr3_2:69546804-69546823 | None:intergenic | 55.0% | |
| AGGAAAGGGCAGATGTCCGA+AGG | + | chr3_2:69546810-69546829 | Msa0420790:CDS | 55.0% | |
| !! | CCTCGCCGGCTTTAACAAAC+CGG | - | chr3_2:69546847-69546866 | None:intergenic | 55.0% |
| GTCATAATCGTAGGCCTCGC+CGG | - | chr3_2:69546861-69546880 | None:intergenic | 55.0% | |
| GGGGCAAAAGCCATGTCTGC+TGG | + | chr3_2:69545721-69545740 | Msa0420790:CDS | 60.0% | |
| GATGCTGCAGTGCTGCATGC+TGG | - | chr3_2:69546213-69546232 | None:intergenic | 60.0% | |
| ! | AGATGTCCGAAGGCGCGTGA+AGG | + | chr3_2:69546820-69546839 | Msa0420790:CDS | 60.0% |
| ! | GATGTCCGAAGGCGCGTGAA+GGG | + | chr3_2:69546821-69546840 | Msa0420790:CDS | 60.0% |
| !! | CCGGTTTGTTAAAGCCGGCG+AGG | + | chr3_2:69546844-69546863 | Msa0420790:CDS | 60.0% |
| GGGGCAAAAGCCATGTCTGC+TGG | + | chr3_2:69545721-69545740 | Msa0420790:CDS | 60.0% | |
| GATGCTGCAGTGCTGCATGC+TGG | - | chr3_2:69546213-69546232 | None:intergenic | 60.0% | |
| ! | AGATGTCCGAAGGCGCGTGA+AGG | + | chr3_2:69546820-69546839 | Msa0420790:CDS | 60.0% |
| ! | GATGTCCGAAGGCGCGTGAA+GGG | + | chr3_2:69546821-69546840 | Msa0420790:CDS | 60.0% |
| !! | CCGGTTTGTTAAAGCCGGCG+AGG | + | chr3_2:69546844-69546863 | Msa0420790:CDS | 60.0% |
| TCTGGGCGGTCGAGCATACG+CGG | - | chr3_2:69545276-69545295 | None:intergenic | 65.0% | |
| CGTATGCTCGACCGCCCAGA+TGG | + | chr3_2:69545276-69545295 | Msa0420790:CDS | 65.0% | |
| TCTGGGCGGTCGAGCATACG+CGG | - | chr3_2:69545276-69545295 | None:intergenic | 65.0% | |
| CGTATGCTCGACCGCCCAGA+TGG | + | chr3_2:69545276-69545295 | Msa0420790:CDS | 65.0% | |
| ! | TCCGAAGGCGCGTGAAGGGC+CGG | + | chr3_2:69546825-69546844 | Msa0420790:CDS | 70.0% |
| ACCGGCCCTTCACGCGCCTT+CGG | - | chr3_2:69546829-69546848 | None:intergenic | 70.0% | |
| ! | TCCGAAGGCGCGTGAAGGGC+CGG | + | chr3_2:69546825-69546844 | Msa0420790:CDS | 70.0% |
| ACCGGCCCTTCACGCGCCTT+CGG | - | chr3_2:69546829-69546848 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 69544760 | 69546907 | 69544760 | ID=Msa0420790;Name=Msa0420790 |
| chr3_2 | mRNA | 69544760 | 69546907 | 69544760 | ID=Msa0420790-mRNA-1;Parent=Msa0420790;Name=Msa0420790-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.33|0|1|1|1|4|0|411 |
| chr3_2 | exon | 69544760 | 69545323 | 69544760 | ID=Msa0420790-mRNA-1:exon:16526;Parent=Msa0420790-mRNA-1 |
| chr3_2 | exon | 69545547 | 69545777 | 69545547 | ID=Msa0420790-mRNA-1:exon:16527;Parent=Msa0420790-mRNA-1 |
| chr3_2 | exon | 69546177 | 69546487 | 69546177 | ID=Msa0420790-mRNA-1:exon:16528;Parent=Msa0420790-mRNA-1 |
| chr3_2 | exon | 69546778 | 69546907 | 69546778 | ID=Msa0420790-mRNA-1:exon:16529;Parent=Msa0420790-mRNA-1 |
| chr3_2 | CDS | 69544760 | 69545323 | 69544760 | ID=Msa0420790-mRNA-1:cds;Parent=Msa0420790-mRNA-1 |
| chr3_2 | CDS | 69545547 | 69545777 | 69545547 | ID=Msa0420790-mRNA-1:cds;Parent=Msa0420790-mRNA-1 |
| chr3_2 | CDS | 69546177 | 69546487 | 69546177 | ID=Msa0420790-mRNA-1:cds;Parent=Msa0420790-mRNA-1 |
| chr3_2 | CDS | 69546778 | 69546907 | 69546778 | ID=Msa0420790-mRNA-1:cds;Parent=Msa0420790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
