AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075470 MtrunA17_Chr2g0318541 90.909 66 6 0 42 107 498 563 4.90e-32 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 111 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAGTTACTATCATATTT+AGG 0.140806 1_2:-50897669 Msa0075470:three_prime_UTR
CCTGAATGACATTGATATTC+TGG 0.189504 1_2:+50898153 None:intergenic
ATCATCATCATAACTGTTAA+TGG 0.198865 1_2:-50899145 Msa0075470:three_prime_UTR
AAGAACAGTATACATGTAAA+TGG 0.205118 1_2:+50897420 None:intergenic
ATTAGTTACTATCATATTTA+GGG 0.265584 1_2:-50897668 Msa0075470:three_prime_UTR
TGCACTTTGTTGAATTGTTT+TGG 0.271540 1_2:-50897623 Msa0075470:three_prime_UTR
TTACTAGCTTAAGACATAAA+TGG 0.278661 1_2:-50898623 Msa0075470:three_prime_UTR
ATTAAGGCTTGGTTTCATTA+AGG 0.279842 1_2:-50900018 Msa0075470:intron
CCAACGTTCATTGATTATAA+TGG 0.304555 1_2:-50897948 Msa0075470:three_prime_UTR
CCAGAATATCAATGTCATTC+AGG 0.310628 1_2:-50898153 Msa0075470:three_prime_UTR
AGTTGAACTATGCGACATTA+AGG 0.318921 1_2:-50900034 Msa0075470:CDS
CACGATATTAGTCTTCTCTT+TGG 0.320611 1_2:-50899359 Msa0075470:CDS
CTGAGGATACTGTGTTCTTC+CGG 0.331177 1_2:-50898788 Msa0075470:three_prime_UTR
AAGTCTCTGGTATGTAAAAT+TGG 0.342123 1_2:-50898981 Msa0075470:three_prime_UTR
AGAAGAACAATACTTTGCTT+TGG 0.343698 1_2:-50897818 Msa0075470:three_prime_UTR
GAAGAACAATACTTTGCTTT+GGG 0.348116 1_2:-50897817 Msa0075470:three_prime_UTR
TCTAATTCTTGCTGTTACTA+AGG 0.349277 1_2:-50898907 Msa0075470:three_prime_UTR
ACGCAGCTCCTGCCCTGGTC+AGG 0.375956 1_2:-50899104 Msa0075470:three_prime_UTR
TGAAATTTAAGTGTAGAATC+AGG 0.382944 1_2:-50897482 Msa0075470:three_prime_UTR
TGAGGATACTGTGTTCTTCC+GGG 0.383874 1_2:-50898787 Msa0075470:three_prime_UTR
TCAATGAACGTTGGTGTAGC+TGG 0.388479 1_2:+50897957 None:intergenic
CTGATACATGTATCTCCTAT+TGG 0.389711 1_2:+50897734 None:intergenic
TCCTGTTTGTTATAGCCATA+AGG 0.397282 1_2:+50898015 None:intergenic
TCTTGGTGCTCAGTCCTTTG+AGG 0.398508 1_2:-50899650 Msa0075470:intron
ACAAAATAGAGCTGGGTGCC+TGG 0.399485 1_2:-50898070 Msa0075470:three_prime_UTR
TCTGTGAATAACCATATGAT+TGG 0.408436 1_2:-50898816 Msa0075470:three_prime_UTR
CTGCACTCTCTGAACTAATC+AGG 0.411911 1_2:-50897517 Msa0075470:three_prime_UTR
TGTGTCATGGTTTATTGTAA+TGG 0.412851 1_2:-50897560 Msa0075470:three_prime_UTR
TAATTTATCCTGCTCTTCAC+TGG 0.416641 1_2:+50897687 None:intergenic
TCTCCTATTGGCACCGTCAA+TGG 0.417525 1_2:+50897746 None:intergenic
ATGACATTGATATTCTGGTT+TGG 0.423705 1_2:+50898158 None:intergenic
TATTTAGGGTCATGGTGTGC+AGG 0.430442 1_2:-50897654 Msa0075470:three_prime_UTR
TGGCTATAACAAACAGGAAA+GGG 0.435466 1_2:-50898010 Msa0075470:three_prime_UTR
ATTTATGAGCGTTATGAGAC+TGG 0.439540 1_2:-50899232 Msa0075470:three_prime_UTR
AGTGAATTGTGAAGATTCCT+TGG 0.446636 1_2:+50899672 None:intergenic
CCTCAGCTTGCCCAATCATA+TGG 0.450278 1_2:+50898805 None:intergenic
GTATCCGAATCTACTCCTTA+TGG 0.451663 1_2:-50898030 Msa0075470:three_prime_UTR
AGGGTCATGGTGTGCAGGGT+TGG 0.456110 1_2:-50897649 Msa0075470:three_prime_UTR
CCTTTCCGACCTCTAGTGCT+TGG 0.456216 1_2:+50899410 None:intergenic
TCATCATCGCTGAAGGAAAC+CGG 0.458878 1_2:+50899461 None:intergenic
CACAGAAGCCTGACCAGGGC+AGG 0.462409 1_2:+50899096 None:intergenic
ATCACTTTCATTGATTATTG+TGG 0.462962 1_2:-50899044 Msa0075470:three_prime_UTR
CAATAGGAGATACATGTATC+AGG 0.463833 1_2:-50897733 Msa0075470:three_prime_UTR
CGCATATGTCAGGCAAATCC+AGG 0.467174 1_2:+50898052 None:intergenic
ATCTATCTGTGATTTGTTCG+TGG 0.469798 1_2:-50898867 Msa0075470:three_prime_UTR
GAATCTTCACAATTCACTCT+TGG 0.470201 1_2:-50899667 Msa0075470:CDS
TCCTTATGGCTATAACAAAC+AGG 0.471089 1_2:-50898016 Msa0075470:three_prime_UTR
TACTATCATATTTAGGGTCA+TGG 0.476367 1_2:-50897662 Msa0075470:three_prime_UTR
AGTCCATTGACGGTGCCAAT+AGG 0.481728 1_2:-50897749 Msa0075470:three_prime_UTR
TTCGCAGAACAAGGCTAGAA+TGG 0.483429 1_2:-50898240 Msa0075470:intron
TTCGTTGTCCAGTGAAGAGC+AGG 0.484634 1_2:-50897695 Msa0075470:three_prime_UTR
TGCAGCTGGAGCTGATAGTC+CGG 0.486818 1_2:-50899480 Msa0075470:CDS
CTCACATCTCCACTCGCATT+CGG 0.488988 1_2:+50897856 None:intergenic
GTGTCAGCATGCATTTCCCT+TGG 0.489277 1_2:-50897909 Msa0075470:three_prime_UTR
CTGTGAATAACCATATGATT+GGG 0.489653 1_2:-50898815 Msa0075470:three_prime_UTR
TTTGTTCTAGGAACGTGTTA+AGG 0.492658 1_2:-50899710 Msa0075470:intron
AGAGCAAGACAAAACCTTCC+CGG 0.495380 1_2:+50898769 None:intergenic
TTTCAACGCAGCTCCTGCCC+TGG 0.495691 1_2:-50899109 Msa0075470:three_prime_UTR
AACTATGCGACATTAAGGCT+TGG 0.498825 1_2:-50900029 Msa0075470:CDS
TGCAGCAATAATTCAAAGAC+AGG 0.499476 1_2:+50897535 None:intergenic
AGAACAGTATACATGTAAAT+GGG 0.499738 1_2:+50897421 None:intergenic
AGAGTTCTACAAAATAGAGC+TGG 0.500119 1_2:-50898078 Msa0075470:three_prime_UTR
TTTCAAGGCAGAAGTGCAGC+TGG 0.505124 1_2:-50899494 Msa0075470:CDS
CGGTTTGCACCAGAACTTGG+TGG 0.505268 1_2:-50898673 Msa0075470:intron
GCATTCTTTGACAAAACAGT+TGG 0.510162 1_2:+50898217 None:intergenic
ATTTAGGGTCATGGTGTGCA+GGG 0.511669 1_2:-50897653 Msa0075470:three_prime_UTR
ATTTGTTGGGTTTACCTCAA+AGG 0.513130 1_2:+50899636 None:intergenic
TGGAATGGAATTTGTTGGGT+AGG 0.516364 1_2:+50897977 None:intergenic
GATTCGGATACGCATATGTC+AGG 0.519976 1_2:+50898042 None:intergenic
TGTAAAATTGGAGGTGAGTG+GGG 0.520147 1_2:-50898969 Msa0075470:three_prime_UTR
TGTGCAAGTACACAAGTCTC+TGG 0.520349 1_2:-50898994 Msa0075470:three_prime_UTR
ATAGCCATAAGGAGTAGATT+CGG 0.520589 1_2:+50898026 None:intergenic
TTTATGTCTTAAGCTAGTAA+AGG 0.520978 1_2:+50898626 None:intergenic
ACAATACTTTGCTTTGGGTG+AGG 0.521540 1_2:-50897812 Msa0075470:three_prime_UTR
ATGTAAAATTGGAGGTGAGT+GGG 0.523440 1_2:-50898970 Msa0075470:three_prime_UTR
TAGCTGGAATGGAATTTGTT+GGG 0.523834 1_2:+50897973 None:intergenic
TCTGTGACAAAGTTGAACTA+TGG 0.533338 1_2:-50900068 Msa0075470:CDS
AGTTAGCATACTATCTTCCA+AGG 0.534470 1_2:+50897892 None:intergenic
GTTCGTGGACCATGCGATGA+TGG 0.536080 1_2:-50898852 Msa0075470:three_prime_UTR
GTAGCTGGAATGGAATTTGT+TGG 0.537737 1_2:+50897972 None:intergenic
CTGGACAACGAATGAGATGC+AGG 0.540409 1_2:+50897706 None:intergenic
GAACGTTGGTGTAGCTGGAA+TGG 0.542196 1_2:+50897962 None:intergenic
GATACTGTGTTCTTCCGGGA+AGG 0.549324 1_2:-50898783 Msa0075470:intron
ACATGTTCACTGTTGTGTCA+TGG 0.552124 1_2:-50897573 Msa0075470:three_prime_UTR
GGAGCGATCTACGCGCTCCA+AGG 0.554334 1_2:-50899689 Msa0075470:CDS
ATGGCTATAACAAACAGGAA+AGG 0.562348 1_2:-50898011 Msa0075470:three_prime_UTR
GGCATCTTCATCATCGCTGA+AGG 0.569407 1_2:+50899454 None:intergenic
TTCTTGCTGTTACTAAGGAG+AGG 0.577976 1_2:-50898902 Msa0075470:three_prime_UTR
TTATAATGGTGAAACTAGCT+TGG 0.578050 1_2:-50897934 Msa0075470:three_prime_UTR
TCTTGCTGTTACTAAGGAGA+GGG 0.578245 1_2:-50898901 Msa0075470:three_prime_UTR
TCTCTGGTATGTAAAATTGG+AGG 0.581652 1_2:-50898978 Msa0075470:three_prime_UTR
GTGCTTGTGAAGTCCATTGA+CGG 0.581942 1_2:-50897759 Msa0075470:three_prime_UTR
AGCTCAAAACCAAGCACTAG+AGG 0.589923 1_2:-50899419 Msa0075470:CDS
CCATTATAATCAATGAACGT+TGG 0.604275 1_2:+50897948 None:intergenic
CCAAGCACTAGAGGTCGGAA+AGG 0.605138 1_2:-50899410 Msa0075470:CDS
GAGTTCTACAAAATAGAGCT+GGG 0.606882 1_2:-50898077 Msa0075470:three_prime_UTR
AGACTGGTGTACATCTATGA+TGG 0.607195 1_2:-50899216 Msa0075470:three_prime_UTR
AGAAGCTAACAAATCTGCAA+AGG 0.609630 1_2:+50899324 None:intergenic
ACTTGGTGGTGATATTGACT+TGG 0.615160 1_2:-50898659 Msa0075470:three_prime_UTR
TATGTAAAATTGGAGGTGAG+TGG 0.623493 1_2:-50898971 Msa0075470:three_prime_UTR
GGCTATAACAAACAGGAAAG+GGG 0.627042 1_2:-50898009 Msa0075470:three_prime_UTR
TGATGATTATTACACTGAAG+TGG 0.627147 1_2:+50897783 None:intergenic
TAATGGTGAAACTAGCTTGG+TGG 0.627473 1_2:-50897931 Msa0075470:three_prime_UTR
AGAGAAGACTAATATCGTGA+TGG 0.628417 1_2:+50899363 None:intergenic
AGATACTCTCCATCATCGCA+TGG 0.629329 1_2:+50898843 None:intergenic
CCATATGATTGGGCAAGCTG+AGG 0.633601 1_2:-50898805 Msa0075470:three_prime_UTR
AAGCACGCAAGTTTGTCGAA+TGG 0.635080 1_2:-50898935 Msa0075470:three_prime_UTR
CAAAACCAAGCACTAGAGGT+CGG 0.637760 1_2:-50899415 Msa0075470:CDS
TTGATCATGCCGAATGCGAG+TGG 0.644627 1_2:-50897865 Msa0075470:three_prime_UTR
ATGACACAACAGTGAACATG+TGG 0.658159 1_2:+50897575 None:intergenic
GTTAGCATACTATCTTCCAA+GGG 0.666617 1_2:+50897893 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTCAATTTTTTATTATTTTT+TGG - chr1_2:50898765-50898784 Msa0075470:intron 10.0%
!!! TTTATTTGTTATTACTATAT+AGG - chr1_2:50899212-50899231 Msa0075470:three_prime_UTR 10.0%
!! AATGTATAATATCATTTGTT+GGG + chr1_2:50897884-50897903 None:intergenic 15.0%
!! ATTGAAAGAAAGAAAAAAAA+AGG + chr1_2:50898223-50898242 None:intergenic 15.0%
!! AATTACATTTATTACTTGAT+GGG + chr1_2:50899116-50899135 None:intergenic 15.0%
!! AAATTACATTTATTACTTGA+TGG + chr1_2:50899117-50899136 None:intergenic 15.0%
!! AATTAGTTACTATCATATTT+AGG - chr1_2:50899835-50899854 Msa0075470:intron 15.0%
!! ATTAGTTACTATCATATTTA+GGG - chr1_2:50899836-50899855 Msa0075470:intron 15.0%
!!! AATCAGGTTATTTAAATTTT+TGG - chr1_2:50900038-50900057 Msa0075470:CDS 15.0%
!!! TCATTTTTCAAGCAATTTTA+TGG - chr1_2:50897412-50897431 Msa0075470:three_prime_UTR 20.0%
!! TTGTCATCAGAATTATTTAA+TGG - chr1_2:50897526-50897545 Msa0075470:three_prime_UTR 20.0%
!!! TTGTGATCAGAATTATTTTA+TGG - chr1_2:50897733-50897752 Msa0075470:three_prime_UTR 20.0%
!! CAATGTATAATATCATTTGT+TGG + chr1_2:50897885-50897904 None:intergenic 20.0%
!! TTGAAAATTATGTAAAAAGC+AGG - chr1_2:50897922-50897941 Msa0075470:three_prime_UTR 20.0%
!! TGAAAATTATGTAAAAAGCA+GGG - chr1_2:50897923-50897942 Msa0075470:three_prime_UTR 20.0%
!!! TGTAATTTGCTTATATGTTT+TGG - chr1_2:50899129-50899148 Msa0075470:three_prime_UTR 20.0%
! AAGAAATAAGCTAAGAATGA+AGG + chr1_2:50897975-50897994 None:intergenic 25.0%
!! TTATTTCTTTATTCCGTACA+GGG - chr1_2:50897986-50898005 Msa0075470:three_prime_UTR 25.0%
! ATCATCATCATAACTGTTAA+TGG - chr1_2:50898359-50898378 Msa0075470:intron 25.0%
!! ATCACTTTCATTGATTATTG+TGG - chr1_2:50898460-50898479 Msa0075470:intron 25.0%
!!! ATTTTTTGGTTCTGATATGT+TGG - chr1_2:50898779-50898798 Msa0075470:intron 25.0%
! TTTATGTCTTAAGCTAGTAA+AGG + chr1_2:50898881-50898900 None:intergenic 25.0%
!! TTACTAGCTTAAGACATAAA+TGG - chr1_2:50898881-50898900 Msa0075470:three_prime_UTR 25.0%
!! GAAGTCTTCTAAATTAGTTT+AGG - chr1_2:50898982-50899001 Msa0075470:three_prime_UTR 25.0%
! AGATACACATGAAAAAATGA+GGG + chr1_2:50899167-50899186 None:intergenic 25.0%
! TAGATACACATGAAAAAATG+AGG + chr1_2:50899168-50899187 None:intergenic 25.0%
! TCATGTGTATCTATTTAACT+TGG - chr1_2:50899175-50899194 Msa0075470:three_prime_UTR 25.0%
!!! GTATCTATTTAACTTGGTTT+TGG - chr1_2:50899181-50899200 Msa0075470:three_prime_UTR 25.0%
! TGAAATTTAAGTGTAGAATC+AGG - chr1_2:50900022-50900041 Msa0075470:CDS 25.0%
! AGAACAGTATACATGTAAAT+GGG + chr1_2:50900086-50900105 None:intergenic 25.0%
! AAGAACAGTATACATGTAAA+TGG + chr1_2:50900087-50900106 None:intergenic 25.0%
! CGGAAAAATGGAAATTAATA+TGG + chr1_2:50900121-50900140 None:intergenic 25.0%
! ATTAAGGCTTGGTTTCATTA+AGG - chr1_2:50897486-50897505 Msa0075470:three_prime_UTR 30.0%
AAAGCCAACAAATGACATTA+AGG - chr1_2:50897677-50897696 Msa0075470:three_prime_UTR 30.0%
! ATTAAGGCTTGGTTTCATTA+AGG - chr1_2:50897486-50897505 Msa0075470:three_prime_UTR 30.0%
ATAATAGTATGATCAGTGAC+TGG - chr1_2:50897758-50897777 Msa0075470:three_prime_UTR 30.0%
! ATCGTTCTTCTTTTTGTTCT+AGG - chr1_2:50897782-50897801 Msa0075470:three_prime_UTR 30.0%
! TTATGTAAAAAGCAGGGTTT+TGG - chr1_2:50897929-50897948 Msa0075470:three_prime_UTR 30.0%
! TATGTAAAAAGCAGGGTTTT+GGG - chr1_2:50897930-50897949 Msa0075470:three_prime_UTR 30.0%
! CTTATTTCTTTATTCCGTAC+AGG - chr1_2:50897985-50898004 Msa0075470:three_prime_UTR 30.0%
GAAAGAAAAAAAAAGGTGAG+AGG + chr1_2:50898216-50898235 None:intergenic 30.0%
AAGTCTCTGGTATGTAAAAT+TGG - chr1_2:50898523-50898542 Msa0075470:intron 30.0%
!! TCTAATTCTTGCTGTTACTA+AGG - chr1_2:50898597-50898616 Msa0075470:intron 30.0%
TCTGTGAATAACCATATGAT+TGG - chr1_2:50898688-50898707 Msa0075470:intron 30.0%
CTGTGAATAACCATATGATT+GGG - chr1_2:50898689-50898708 Msa0075470:intron 30.0%
! ATGACACTAATATCCTTTTC+CGG - chr1_2:50898811-50898830 Msa0075470:three_prime_UTR 30.0%
TATAAACCAAGAGTGGAATT+TGG + chr1_2:50899074-50899093 None:intergenic 30.0%
TCCACTCTTGGTTTATATTA+AGG - chr1_2:50899077-50899096 Msa0075470:three_prime_UTR 30.0%
ACCTTAATATAAACCAAGAG+TGG + chr1_2:50899081-50899100 None:intergenic 30.0%
! AACTGTTTTGTCAAAGAATG+CGG - chr1_2:50899289-50899308 Msa0075470:CDS 30.0%
! ATGACATTGATATTCTGGTT+TGG + chr1_2:50899349-50899368 None:intergenic 30.0%
! AAAACGAGAAGGTCTATTTT+CGG - chr1_2:50899383-50899402 Msa0075470:CDS 30.0%
CCATTATAATCAATGAACGT+TGG + chr1_2:50899559-50899578 None:intergenic 30.0%
! CCAACGTTCATTGATTATAA+TGG - chr1_2:50899556-50899575 Msa0075470:intron 30.0%
TTATAATGGTGAAACTAGCT+TGG - chr1_2:50899570-50899589 Msa0075470:intron 30.0%
AGAAGAACAATACTTTGCTT+TGG - chr1_2:50899686-50899705 Msa0075470:CDS 30.0%
GAAGAACAATACTTTGCTTT+GGG - chr1_2:50899687-50899706 Msa0075470:CDS 30.0%
TGATGATTATTACACTGAAG+TGG + chr1_2:50899724-50899743 None:intergenic 30.0%
! TACTATCATATTTAGGGTCA+TGG - chr1_2:50899842-50899861 Msa0075470:intron 30.0%
! TGCACTTTGTTGAATTGTTT+TGG - chr1_2:50899881-50899900 Msa0075470:intron 30.0%
TGTGTCATGGTTTATTGTAA+TGG - chr1_2:50899944-50899963 Msa0075470:intron 30.0%
TCTGTGACAAAGTTGAACTA+TGG - chr1_2:50897436-50897455 Msa0075470:three_prime_UTR 35.0%
AGTTGAACTATGCGACATTA+AGG - chr1_2:50897470-50897489 Msa0075470:three_prime_UTR 35.0%
ACGTAAGTATGATCAATGAC+TGG - chr1_2:50897560-50897579 Msa0075470:three_prime_UTR 35.0%
! GGTAACGTTCTTTTTGTTCT+AGG - chr1_2:50897581-50897600 Msa0075470:three_prime_UTR 35.0%
!! TTTGTTCTAGGAACGTGTTA+AGG - chr1_2:50897593-50897612 Msa0075470:three_prime_UTR 35.0%
!! ATTTGTTGGCTTTACCTCAA+AGG + chr1_2:50897670-50897689 None:intergenic 35.0%
! CAAGCCTTAATGTCATTTGT+TGG + chr1_2:50897684-50897703 None:intergenic 35.0%
CAACAAATGACATTAAGGCT+TGG - chr1_2:50897682-50897701 Msa0075470:three_prime_UTR 35.0%
!! TTTGTTCTAGGAACGTGTTA+AGG - chr1_2:50897593-50897612 Msa0075470:three_prime_UTR 35.0%
AGTGAATTGTGAAGATTCCT+TGG + chr1_2:50897835-50897854 None:intergenic 35.0%
GAATCTTCACAATTCACTCT+TGG - chr1_2:50897837-50897856 Msa0075470:three_prime_UTR 35.0%
! ATTTGTTGGGTTTACCTCAA+AGG + chr1_2:50897871-50897890 None:intergenic 35.0%
AGAGAAGACTAATATCGTGA+TGG + chr1_2:50898144-50898163 None:intergenic 35.0%
!! CACGATATTAGTCTTCTCTT+TGG - chr1_2:50898145-50898164 Msa0075470:three_prime_UTR 35.0%
AGAAGCTAACAAATCTGCAA+AGG + chr1_2:50898183-50898202 None:intergenic 35.0%
ATTTATGAGCGTTATGAGAC+TGG - chr1_2:50898272-50898291 Msa0075470:intron 35.0%
TCTCTGGTATGTAAAATTGG+AGG - chr1_2:50898526-50898545 Msa0075470:intron 35.0%
TATGTAAAATTGGAGGTGAG+TGG - chr1_2:50898533-50898552 Msa0075470:intron 35.0%
ATGTAAAATTGGAGGTGAGT+GGG - chr1_2:50898534-50898553 Msa0075470:intron 35.0%
!! ATCTATCTGTGATTTGTTCG+TGG - chr1_2:50898637-50898656 Msa0075470:three_prime_UTR 35.0%
!!! ATAGGCTAGCTTTTTTGACA+TGG - chr1_2:50899230-50899249 Msa0075470:three_prime_UTR 35.0%
GTATATCATTTCGCAGAACA+AGG - chr1_2:50899255-50899274 Msa0075470:exon 35.0%
GCATTCTTTGACAAAACAGT+TGG + chr1_2:50899290-50899309 None:intergenic 35.0%
CCTGAATGACATTGATATTC+TGG + chr1_2:50899354-50899373 None:intergenic 35.0%
CCAGAATATCAATGTCATTC+AGG - chr1_2:50899351-50899370 Msa0075470:CDS 35.0%
!! GGTTGATAAGAAAAACGAGA+AGG - chr1_2:50899372-50899391 Msa0075470:CDS 35.0%
AGAGTTCTACAAAATAGAGC+TGG - chr1_2:50899426-50899445 Msa0075470:CDS 35.0%
GAGTTCTACAAAATAGAGCT+GGG - chr1_2:50899427-50899446 Msa0075470:CDS 35.0%
ATAGCCATAAGGAGTAGATT+CGG + chr1_2:50899481-50899500 None:intergenic 35.0%
TCCTTATGGCTATAACAAAC+AGG - chr1_2:50899488-50899507 Msa0075470:CDS 35.0%
!! TCCTGTTTGTTATAGCCATA+AGG + chr1_2:50899492-50899511 None:intergenic 35.0%
ATGGCTATAACAAACAGGAA+AGG - chr1_2:50899493-50899512 Msa0075470:CDS 35.0%
TGGCTATAACAAACAGGAAA+GGG - chr1_2:50899494-50899513 Msa0075470:CDS 35.0%
! TAGCTGGAATGGAATTTGTT+GGG + chr1_2:50899534-50899553 None:intergenic 35.0%
GTTAGCATACTATCTTCCAA+GGG + chr1_2:50899614-50899633 None:intergenic 35.0%
AGTTAGCATACTATCTTCCA+AGG + chr1_2:50899615-50899634 None:intergenic 35.0%
CTGATACATGTATCTCCTAT+TGG + chr1_2:50899773-50899792 None:intergenic 35.0%
CAATAGGAGATACATGTATC+AGG - chr1_2:50899771-50899790 Msa0075470:intron 35.0%
TAATTTATCCTGCTCTTCAC+TGG + chr1_2:50899820-50899839 None:intergenic 35.0%
TGCAGCAATAATTCAAAGAC+AGG + chr1_2:50899972-50899991 None:intergenic 35.0%
AACTATGCGACATTAAGGCT+TGG - chr1_2:50897475-50897494 Msa0075470:three_prime_UTR 40.0%
GAATATTCACAGTTCACTCC+TGG - chr1_2:50897636-50897655 Msa0075470:three_prime_UTR 40.0%
! TATTCCGTACAGGGTTTTCA+AGG - chr1_2:50897995-50898014 Msa0075470:three_prime_UTR 40.0%
! TTTTGAGCTTGATGTTGGCA+TGG + chr1_2:50898074-50898093 None:intergenic 40.0%
!!! CTTGGTTTTGAGCTTGATGT+TGG + chr1_2:50898079-50898098 None:intergenic 40.0%
AGACTGGTGTACATCTATGA+TGG - chr1_2:50898288-50898307 Msa0075470:intron 40.0%
TGTAAAATTGGAGGTGAGTG+GGG - chr1_2:50898535-50898554 Msa0075470:intron 40.0%
!! TTCTTGCTGTTACTAAGGAG+AGG - chr1_2:50898602-50898621 Msa0075470:intron 40.0%
!! TCTTGCTGTTACTAAGGAGA+GGG - chr1_2:50898603-50898622 Msa0075470:three_prime_UTR 40.0%
TCAATATCACCACCAAGTTC+TGG + chr1_2:50898843-50898862 None:intergenic 40.0%
!! ACTTGGTGGTGATATTGACT+TGG - chr1_2:50898845-50898864 Msa0075470:three_prime_UTR 40.0%
GACTATCCAAATTCCACTCT+TGG - chr1_2:50899065-50899084 Msa0075470:three_prime_UTR 40.0%
CATGAAAAAATGAGGGTCGA+GGG + chr1_2:50899160-50899179 None:intergenic 40.0%
ACATGAAAAAATGAGGGTCG+AGG + chr1_2:50899161-50899180 None:intergenic 40.0%
GTATCCGAATCTACTCCTTA+TGG - chr1_2:50899474-50899493 Msa0075470:CDS 40.0%
GGCTATAACAAACAGGAAAG+GGG - chr1_2:50899495-50899514 Msa0075470:CDS 40.0%
!! TGGAATGGAATTTGTTGGGT+AGG + chr1_2:50899530-50899549 None:intergenic 40.0%
GTAGCTGGAATGGAATTTGT+TGG + chr1_2:50899535-50899554 None:intergenic 40.0%
! TAATGGTGAAACTAGCTTGG+TGG - chr1_2:50899573-50899592 Msa0075470:intron 40.0%
! ACAATACTTTGCTTTGGGTG+AGG - chr1_2:50899692-50899711 Msa0075470:CDS 40.0%
ATGACACAACAGTGAACATG+TGG + chr1_2:50899932-50899951 None:intergenic 40.0%
ACATGTTCACTGTTGTGTCA+TGG - chr1_2:50899931-50899950 Msa0075470:intron 40.0%
!!! TAAAAAGCAGGGTTTTGGGC+AGG - chr1_2:50897934-50897953 Msa0075470:three_prime_UTR 45.0%
TCTGCCTTGAAAACCCTGTA+CGG + chr1_2:50898002-50898021 None:intergenic 45.0%
TCATCATCGCTGAAGGAAAC+CGG + chr1_2:50898046-50898065 None:intergenic 45.0%
AGCTCAAAACCAAGCACTAG+AGG - chr1_2:50898085-50898104 Msa0075470:three_prime_UTR 45.0%
CAAAACCAAGCACTAGAGGT+CGG - chr1_2:50898089-50898108 Msa0075470:three_prime_UTR 45.0%
! TTTTCACAGAAGCCTGACCA+GGG + chr1_2:50898415-50898434 None:intergenic 45.0%
! TTTTTCACAGAAGCCTGACC+AGG + chr1_2:50898416-50898435 None:intergenic 45.0%
TGTGCAAGTACACAAGTCTC+TGG - chr1_2:50898510-50898529 Msa0075470:intron 45.0%
AAGCACGCAAGTTTGTCGAA+TGG - chr1_2:50898569-50898588 Msa0075470:intron 45.0%
AGATACTCTCCATCATCGCA+TGG + chr1_2:50898664-50898683 None:intergenic 45.0%
CTGAGGATACTGTGTTCTTC+CGG - chr1_2:50898716-50898735 Msa0075470:intron 45.0%
TGAGGATACTGTGTTCTTCC+GGG - chr1_2:50898717-50898736 Msa0075470:intron 45.0%
AGAGCAAGACAAAACCTTCC+CGG + chr1_2:50898738-50898757 None:intergenic 45.0%
TTCGCAGAACAAGGCTAGAA+TGG - chr1_2:50899264-50899283 Msa0075470:CDS 45.0%
! GAGAAGGTCTATTTTCGGCA+GGG - chr1_2:50899388-50899407 Msa0075470:CDS 45.0%
GATTCGGATACGCATATGTC+AGG + chr1_2:50899465-50899484 None:intergenic 45.0%
TCAATGAACGTTGGTGTAGC+TGG + chr1_2:50899550-50899569 None:intergenic 45.0%
GTGCTTGTGAAGTCCATTGA+CGG - chr1_2:50899745-50899764 Msa0075470:intron 45.0%
! TATTTAGGGTCATGGTGTGC+AGG - chr1_2:50899850-50899869 Msa0075470:intron 45.0%
! ATTTAGGGTCATGGTGTGCA+GGG - chr1_2:50899851-50899870 Msa0075470:intron 45.0%
CTGCACTCTCTGAACTAATC+AGG - chr1_2:50899987-50900006 Msa0075470:intron 45.0%
!! TCTTGGTGCTCAGTCCTTTG+AGG - chr1_2:50897854-50897873 Msa0075470:three_prime_UTR 50.0%
! TTTCAAGGCAGAAGTGCAGC+TGG - chr1_2:50898010-50898029 Msa0075470:three_prime_UTR 50.0%
GGCATCTTCATCATCGCTGA+AGG + chr1_2:50898053-50898072 None:intergenic 50.0%
CCTCAGCTTGCCCAATCATA+TGG + chr1_2:50898702-50898721 None:intergenic 50.0%
CCATATGATTGGGCAAGCTG+AGG - chr1_2:50898699-50898718 Msa0075470:intron 50.0%
GATACTGTGTTCTTCCGGGA+AGG - chr1_2:50898721-50898740 Msa0075470:intron 50.0%
GTTCTGGTGCAAACCGGAAA+AGG + chr1_2:50898827-50898846 None:intergenic 50.0%
! TTCCGGTTTGCACCAGAACT+TGG - chr1_2:50898828-50898847 Msa0075470:three_prime_UTR 50.0%
! CACCAAGTTCTGGTGCAAAC+CGG + chr1_2:50898833-50898852 None:intergenic 50.0%
! CGAGAAGGTCTATTTTCGGC+AGG - chr1_2:50899387-50899406 Msa0075470:CDS 50.0%
ACAAAATAGAGCTGGGTGCC+TGG - chr1_2:50899434-50899453 Msa0075470:CDS 50.0%
CGCATATGTCAGGCAAATCC+AGG + chr1_2:50899455-50899474 None:intergenic 50.0%
GAACGTTGGTGTAGCTGGAA+TGG + chr1_2:50899545-50899564 None:intergenic 50.0%
GTGTCAGCATGCATTTCCCT+TGG - chr1_2:50899595-50899614 Msa0075470:intron 50.0%
TTGATCATGCCGAATGCGAG+TGG - chr1_2:50899639-50899658 Msa0075470:intron 50.0%
CTCACATCTCCACTCGCATT+CGG + chr1_2:50899651-50899670 None:intergenic 50.0%
! AGTCCATTGACGGTGCCAAT+AGG - chr1_2:50899755-50899774 Msa0075470:intron 50.0%
TCTCCTATTGGCACCGTCAA+TGG + chr1_2:50899761-50899780 None:intergenic 50.0%
CTGGACAACGAATGAGATGC+AGG + chr1_2:50899801-50899820 None:intergenic 50.0%
TTCGTTGTCCAGTGAAGAGC+AGG - chr1_2:50899809-50899828 Msa0075470:intron 50.0%
TCCTGGTGCTCAGTCCTTTG+AGG - chr1_2:50897653-50897672 Msa0075470:three_prime_UTR 55.0%
ACCTCAAAGGACTGAGCACC+AGG + chr1_2:50897657-50897676 None:intergenic 55.0%
TGCAGCTGGAGCTGATAGTC+CGG - chr1_2:50898024-50898043 Msa0075470:three_prime_UTR 55.0%
CCTTTCCGACCTCTAGTGCT+TGG + chr1_2:50898097-50898116 None:intergenic 55.0%
CCAAGCACTAGAGGTCGGAA+AGG - chr1_2:50898094-50898113 Msa0075470:three_prime_UTR 55.0%
GTTCGTGGACCATGCGATGA+TGG - chr1_2:50898652-50898671 Msa0075470:three_prime_UTR 55.0%
CGGTTTGCACCAGAACTTGG+TGG - chr1_2:50898831-50898850 Msa0075470:three_prime_UTR 55.0%
GGAGTGATCGACACGCTCGA+AGG - chr1_2:50897614-50897633 Msa0075470:three_prime_UTR 60.0%
TTTCAACGCAGCTCCTGCCC+TGG - chr1_2:50898395-50898414 Msa0075470:intron 60.0%
AGGGTCATGGTGTGCAGGGT+TGG - chr1_2:50899855-50899874 Msa0075470:intron 60.0%
GGAGCGATCTACGCGCTCCA+AGG - chr1_2:50897815-50897834 Msa0075470:three_prime_UTR 65.0%
CACAGAAGCCTGACCAGGGC+AGG + chr1_2:50898411-50898430 None:intergenic 65.0%
ACGCAGCTCCTGCCCTGGTC+AGG - chr1_2:50898400-50898419 Msa0075470:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 50897382 50900144 50897382 ID=Msa0075470;Name=Msa0075470
chr1_2 mRNA 50897382 50900144 50897382 ID=Msa0075470-mRNA-1;Parent=Msa0075470;Name=Msa0075470-mRNA-1;_AED=0.26;_eAED=0.28;_QI=0|1|0.8|1|0.5|0.6|5|1432|151
chr1_2 exon 50897382 50898255 50897382 ID=Msa0075470-mRNA-1:exon:15696;Parent=Msa0075470-mRNA-1
chr1_2 exon 50898603 50898682 50898603 ID=Msa0075470-mRNA-1:exon:15695;Parent=Msa0075470-mRNA-1
chr1_2 exon 50898784 50899519 50898784 ID=Msa0075470-mRNA-1:exon:15694;Parent=Msa0075470-mRNA-1
chr1_2 exon 50899651 50899722 50899651 ID=Msa0075470-mRNA-1:exon:15693;Parent=Msa0075470-mRNA-1
chr1_2 exon 50900019 50900144 50900019 ID=Msa0075470-mRNA-1:exon:15692;Parent=Msa0075470-mRNA-1
chr1_2 CDS 50900019 50900144 50900019 ID=Msa0075470-mRNA-1:cds;Parent=Msa0075470-mRNA-1
chr1_2 CDS 50899651 50899722 50899651 ID=Msa0075470-mRNA-1:cds;Parent=Msa0075470-mRNA-1
chr1_2 CDS 50899262 50899519 50899262 ID=Msa0075470-mRNA-1:cds;Parent=Msa0075470-mRNA-1
chr1_2 three_prime_UTR 50898784 50899261 50898784 ID=Msa0075470-mRNA-1:three_prime_utr;Parent=Msa0075470-mRNA-1
chr1_2 three_prime_UTR 50898603 50898682 50898603 ID=Msa0075470-mRNA-1:three_prime_utr;Parent=Msa0075470-mRNA-1
chr1_2 three_prime_UTR 50897382 50898255 50897382 ID=Msa0075470-mRNA-1:three_prime_utr;Parent=Msa0075470-mRNA-1
Gene Sequence

>Msa0075470

ATGGGTTTAGAAGCTAGTTTATTTCAGAAATCATTTTTCAAGCAATTTTATGGATCTGTGACAAAGTTGAACTATGGATCTGTGACAAAGTTGAACTATGCGACATTAAGGCTTGGTTTCATTAAGGAACGTGTTAAGGAGCGATCTACGCGCTCCAAGGAATCTTCACAATTCACTCTTGGTGCTCAGTCCTTTGAGGGTTTTCAAGGCAGAAGTGCAGCTGGAGCTGATAGTCCGGTTTCCTTCAGCGATGATGAAGATGCCATGCCAACATCAAGCTCAAAACCAAGCACTAGAGGTCGGAAAGGATCTGTTGCATCTAATTGTAAACACCATCACGATATTAGTCTTCTCTTTGGCATTTTGCAAAACCTTTGCAGATTTGTTAGCTTCTATTCAATTCGCCTCTCACCTTTTTTTTTCTTTCTTTCAATTAGAAAAATTGAGTTTTTCTAA

Protein sequence

>Msa0075470

MGLEASLFQKSFFKQFYGSVTKLNYGSVTKLNYATLRLGFIKERVKERSTRSKESSQFTLGAQSFEGFQGRSAAGADSPVSFSDDEDAMPTSSSKPSTRGRKGSVASNCKHHHDISLLFGILQNLCRFVSFYSIRLSPFFFFLSIRKIEFF*