AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0961980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961980 MtrunA17_Chr4g0012711 59.824 341 104 11 2 330 10 329 5.33e-116 344
Msa0961980 MtrunA17_Chr6g0481641 58.631 336 109 9 2 323 11 330 1.19e-114 341
Msa0961980 MtrunA17_Chr4g0012751 59.118 340 106 11 2 330 10 327 2.26e-108 324
Msa0961980 MtrunA17_Chr6g0474051 54.412 340 128 7 7 330 47 375 8.16e-107 322
Msa0961980 MtrunA17_Chr6g0477491 55.389 334 123 9 7 330 16 333 1.03e-102 310
Msa0961980 MtrunA17_Chr6g0477501 52.819 337 129 8 7 330 16 335 8.13e-102 308
Msa0961980 MtrunA17_Chr4g0012771 55.294 340 117 10 2 330 10 325 1.24e-101 307
Msa0961980 MtrunA17_Chr6g0481681 55.000 340 126 8 7 330 16 344 3.72e-101 306
Msa0961980 MtrunA17_Chr4g0012741 56.342 339 116 11 2 330 10 326 6.47e-101 305
Msa0961980 MtrunA17_Chr6g0487451 54.054 333 117 11 2 323 14 321 4.02e-99 301
Msa0961980 MtrunA17_Chr4g0073581 53.799 329 122 10 4 323 3 310 4.98e-96 293
Msa0961980 MtrunA17_Chr6g0481501 52.367 338 124 9 2 330 13 322 3.23e-93 285
Msa0961980 MtrunA17_Chr6g0487431 51.327 339 135 12 5 330 103 424 5.03e-86 270
Msa0961980 MtrunA17_Chr7g0222971 51.736 288 89 8 45 324 1 246 1.68e-79 248
Msa0961980 MtrunA17_Chr6g0485611 48.657 335 101 11 3 323 65 342 4.62e-79 250
Msa0961980 MtrunA17_Chr6g0481901 51.379 290 91 9 45 323 1 251 5.90e-78 244
Msa0961980 MtrunA17_Chr6g0481631 47.191 356 111 12 1 323 20 331 3.37e-76 243
Msa0961980 MtrunA17_Chr6g0487441 50.161 311 109 14 45 323 1 297 1.85e-74 236
Msa0961980 MtrunA17_Chr6g0475921 45.588 340 140 13 7 330 18 328 2.74e-70 226
Msa0961980 MtrunA17_Chr4g0027401 43.429 350 144 13 5 330 11 330 3.53e-68 220
Msa0961980 MtrunA17_Chr6g0483001 44.675 338 147 11 2 330 12 318 9.91e-65 212
Msa0961980 MtrunA17_Chr2g0287591 42.373 354 145 17 2 323 11 337 1.74e-64 212
Msa0961980 MtrunA17_Chr3g0080541 43.491 338 144 13 2 330 8 307 1.77e-64 211
Msa0961980 MtrunA17_Chr5g0447481 43.064 346 149 12 8 330 13 333 3.19e-64 211
Msa0961980 MtrunA17_Chr5g0447811 43.978 357 161 16 2 330 12 357 6.12e-64 211
Msa0961980 MtrunA17_Chr6g0479061 49.804 255 92 10 2 240 27 261 8.41e-64 205
Msa0961980 MtrunA17_Chr5g0432381 42.980 349 152 15 2 330 29 350 9.83e-64 210
Msa0961980 MtrunA17_Chr2g0287511 41.477 352 152 16 2 323 11 338 3.96e-63 208
Msa0961980 MtrunA17_Chr6g0483101 43.275 342 151 11 2 330 12 323 5.53e-63 207
Msa0961980 MtrunA17_Chr5g0444211 42.815 341 157 13 3 330 11 326 7.50e-63 207
Msa0961980 MtrunA17_Chr6g0485831 48.864 264 87 9 78 330 2 228 4.62e-61 199
Msa0961980 MtrunA17_Chr5g0432651 41.243 354 140 16 1 322 1 318 6.00e-61 202
Msa0961980 MtrunA17_Chr5g0415621 40.805 348 135 11 1 323 1 302 7.42e-61 201
Msa0961980 MtrunA17_Chr7g0220331 42.342 333 142 12 8 323 18 317 2.18e-60 201
Msa0961980 MtrunA17_Chr2g0294741 41.246 337 133 11 2 323 8 294 5.14e-60 199
Msa0961980 MtrunA17_Chr2g0287581 40.346 347 159 14 7 330 15 336 6.09e-60 199
Msa0961980 MtrunA17_Chr2g0333411 41.520 342 152 13 7 330 13 324 4.45e-59 197
Msa0961980 MtrunA17_Chr6g0481661 49.020 255 97 7 89 330 2 236 7.49e-59 194
Msa0961980 MtrunA17_Chr6g0483081 42.388 335 150 11 2 323 12 316 1.40e-58 196
Msa0961980 MtrunA17_Chr4g0057071 41.003 339 163 13 7 330 17 333 1.41e-58 196
Msa0961980 MtrunA17_Chr6g0483111 41.873 363 162 13 2 340 9 346 1.90e-58 196
Msa0961980 MtrunA17_Chr8g0365821 39.766 342 157 11 2 330 10 315 1.41e-57 193
Msa0961980 MtrunA17_Chr5g0447071 40.181 331 160 10 8 323 18 325 4.66e-57 192
Msa0961980 MtrunA17_Chr3g0089071 40.688 349 158 13 7 330 15 339 5.05e-57 192
Msa0961980 MtrunA17_Chr2g0299051 41.457 357 153 15 1 330 10 337 1.63e-56 191
Msa0961980 MtrunA17_Chr7g0243001 40.059 337 151 15 8 323 14 320 1.74e-56 190
Msa0961980 MtrunA17_Chr5g0447611 40.303 330 143 11 17 330 25 316 1.30e-55 188
Msa0961980 MtrunA17_Chr1g0169071 38.462 338 157 12 4 330 13 310 2.22e-55 187
Msa0961980 MtrunA17_Chr1g0146541 41.543 337 158 13 8 330 12 323 2.93e-55 187
Msa0961980 MtrunA17_Chr5g0407111 40.122 329 154 13 2 319 16 312 1.87e-54 186
Msa0961980 MtrunA17_Chr5g0447601 41.124 338 166 11 5 330 13 329 3.09e-54 185
Msa0961980 MtrunA17_Chr5g0429271 37.076 383 158 13 1 337 19 364 3.62e-54 185
Msa0961980 MtrunA17_Chr8g0361951 36.578 339 165 11 2 330 8 306 7.20e-54 183
Msa0961980 MtrunA17_Chr1g0146521 39.701 335 154 13 7 323 21 325 3.36e-53 182
Msa0961980 MtrunA17_Chr2g0287491 35.447 347 162 12 8 323 12 327 4.61e-53 182
Msa0961980 MtrunA17_Chr1g0169051 39.053 338 155 14 4 330 13 310 6.22e-53 181
Msa0961980 MtrunA17_Chr5g0447271 41.159 345 134 14 5 323 9 310 9.54e-53 178
Msa0961980 MtrunA17_Chr2g0333391 38.746 351 158 14 7 330 13 333 1.10e-52 181
Msa0961980 MtrunA17_Chr5g0447281 39.181 342 149 12 1 323 10 311 5.34e-52 179
Msa0961980 MtrunA17_Chr1g0169061 38.576 337 149 13 4 323 46 341 5.69e-51 177
Msa0961980 MtrunA17_Chr2g0310541 37.879 330 160 9 5 322 9 305 7.06e-51 176
Msa0961980 MtrunA17_Chr4g0065911 42.606 284 128 9 2 276 12 269 2.08e-50 173
Msa0961980 MtrunA17_Chr5g0424381 37.669 369 156 13 1 330 19 352 2.16e-50 175
Msa0961980 MtrunA17_Chr8g0364691 35.549 346 169 13 4 330 10 320 2.88e-50 174
Msa0961980 MtrunA17_Chr8g0353231 37.764 331 153 11 2 322 7 294 9.84e-50 171
Msa0961980 MtrunA17_Chr2g0310641 37.576 330 166 10 1 322 6 303 1.13e-49 172
Msa0961980 MtrunA17_Chr4g0005431 38.304 342 174 13 2 323 16 340 3.60e-49 172
Msa0961980 MtrunA17_Chr7g0220301 39.766 342 157 15 7 330 17 327 8.64e-48 167
Msa0961980 MtrunA17_Chr5g0433501 39.933 298 144 11 45 330 1 275 2.05e-47 165
Msa0961980 MtrunA17_Chr7g0266381 55.172 174 59 4 5 171 14 175 2.20e-47 160
Msa0961980 MtrunA17_Chr8g0354081 39.496 357 147 15 7 330 14 334 3.37e-47 166
Msa0961980 MtrunA17_Chr7g0249121 36.036 333 147 11 7 323 12 294 4.57e-47 165
Msa0961980 MtrunA17_Chr8g0356061 35.905 337 154 12 1 323 9 297 7.98e-47 164
Msa0961980 MtrunA17_Chr8g0360921 39.222 334 151 15 2 323 7 300 9.62e-47 164
Msa0961980 MtrunA17_Chr1g0174821 36.311 347 169 9 2 324 10 328 1.00e-45 162
Msa0961980 MtrunA17_Chr5g0442941 39.697 330 146 10 7 323 47 336 3.81e-45 161
Msa0961980 MtrunA17_Chr2g0310531 36.254 331 159 12 7 322 11 304 3.94e-44 157
Msa0961980 MtrunA17_Chr3g0143041 92.308 78 6 0 324 401 68 145 4.64e-44 150
Msa0961980 MtrunA17_Chr3g0143031 92.308 78 6 0 324 401 68 145 4.64e-44 150
Msa0961980 MtrunA17_Chr3g0133441 37.982 337 170 14 2 323 17 329 8.64e-44 157
Msa0961980 MtrunA17_Chr8g0339901 37.278 338 159 14 7 323 9 314 1.85e-43 156
Msa0961980 MtrunA17_Chr1g0170981 36.268 284 135 6 5 279 31 277 1.95e-43 153
Msa0961980 MtrunA17_Chr5g0426631 38.658 313 152 13 45 330 1 300 2.91e-43 155
Msa0961980 MtrunA17_Chr5g0418511 34.146 328 131 11 6 327 23 271 1.45e-42 153
Msa0961980 MtrunA17_Chr5g0447881 39.493 276 106 12 4 257 19 255 2.56e-42 149
Msa0961980 MtrunA17_Chr6g0474021 51.807 166 62 4 7 165 47 201 2.28e-41 145
Msa0961980 MtrunA17_Chr8g0350981 36.164 365 165 13 3 330 9 342 5.87e-41 150
Msa0961980 MtrunA17_Chr1g0212311 38.976 254 106 9 8 257 29 237 3.85e-40 143
Msa0961980 MtrunA17_Chr8g0350971 36.522 345 149 14 3 310 9 320 1.16e-39 146
Msa0961980 MtrunA17_Chr4g0002151 36.296 270 114 11 77 323 38 272 1.88e-38 141
Msa0961980 MtrunA17_Chr8g0350891 34.748 377 161 17 2 330 9 348 2.38e-38 143
Msa0961980 MtrunA17_Chr5g0432371 37.075 294 139 12 47 323 1 265 3.12e-38 140
Msa0961980 MtrunA17_Chr8g0355951 34.817 382 155 16 1 330 9 348 5.26e-38 142
Msa0961980 MtrunA17_Chr2g0333381 37.716 289 135 8 8 278 14 275 4.57e-37 136
Msa0961980 MtrunA17_Chr8g0342661 35.161 310 146 12 3 286 9 289 2.04e-36 135
Msa0961980 MtrunA17_Chr3g0142551 85.075 67 10 0 324 390 44 110 1.62e-35 127
Msa0961980 MtrunA17_Chr8g0364721 33.735 332 156 15 9 323 25 309 3.56e-35 134
Msa0961980 MtrunA17_Chr1g0188251 36.400 250 117 7 5 250 15 226 4.11e-35 131
Msa0961980 MtrunA17_Chr4g0051131 62.500 96 29 1 207 295 14 109 4.68e-33 121
Msa0961980 MtrunA17_Chr8g0365751 38.679 212 98 6 2 208 43 227 1.07e-32 123
Msa0961980 MtrunA17_Chr5g0415251 41.202 233 107 8 8 231 18 229 2.20e-32 122
Msa0961980 MtrunA17_Chr3g0083881 45.029 171 73 7 174 330 2 165 4.45e-32 121
Msa0961980 MtrunA17_Chr7g0271461 33.636 330 160 7 7 330 14 290 9.81e-32 124
Msa0961980 MtrunA17_Chr7g0220251 38.813 219 105 9 106 323 11 201 5.56e-30 116
Msa0961980 MtrunA17_Chr2g0310651 32.946 258 126 9 77 322 8 230 3.06e-29 115
Msa0961980 MtrunA17_Chr8g0351001 31.339 351 145 12 2 322 47 331 3.14e-29 117
Msa0961980 MtrunA17_Chr5g0405971 35.430 302 131 14 45 323 1 261 4.60e-29 115
Msa0961980 MtrunA17_Chr4g0006491 37.245 196 77 7 137 323 2 160 2.00e-28 112
Msa0961980 MtrunA17_Chr7g0266391 63.043 92 26 3 235 318 1 92 7.00e-28 106
Msa0961980 MtrunA17_Chr1g0201501 34.956 226 102 6 4 227 15 197 2.96e-26 104
Msa0961980 MtrunA17_Chr5g0439831 35.841 226 103 9 109 330 12 199 7.99e-26 105
Msa0961980 MtrunA17_Chr8g0364681 29.464 336 181 14 5 323 31 327 2.06e-25 107
Msa0961980 MtrunA17_Chr2g0310631 40.506 158 73 5 5 157 9 150 1.78e-24 102
Msa0961980 MtrunA17_Chr8g0364711 31.707 246 126 9 91 330 1 210 6.50e-24 100
Msa0961980 MtrunA17_Chr8g0338991 50.000 116 52 2 217 330 22 133 8.82e-24 97.4
Msa0961980 MtrunA17_Chr5g0447781 38.065 155 74 4 3 153 17 153 3.42e-23 95.1
Msa0961980 MtrunA17_Chr6g0449251 42.331 163 72 6 175 330 49 196 1.04e-22 96.7
Msa0961980 MtrunA17_Chr3g0084291 32.889 225 90 6 2 221 7 175 8.31e-22 92.0
Msa0961980 MtrunA17_Chr5g0406821 45.763 118 63 1 213 330 6 122 1.47e-21 91.7
Msa0961980 MtrunA17_Chr4g0051141 52.475 101 32 4 245 330 15 114 3.87e-20 86.3
Msa0961980 MtrunA17_Chr6g0452211 38.710 155 83 6 173 323 6 152 4.63e-19 84.7
Msa0961980 MtrunA17_Chr5g0447891 49.533 107 45 3 214 316 19 120 6.58e-19 82.4
Msa0961980 MtrunA17_Chr5g0448541 36.458 192 75 6 134 323 95 241 2.23e-18 84.7
Msa0961980 MtrunA17_Chr2g0312541 39.264 163 79 7 175 323 15 171 1.11e-17 82.4
Msa0961980 MtrunA17_Chr5g0445231 53.191 94 33 6 202 290 17 104 2.33e-17 77.4
Msa0961980 MtrunA17_Chr2g0290061 22.327 318 208 9 3 315 1 284 1.62e-16 80.9
Msa0961980 MtrunA17_Chr8g0355981 47.253 91 46 1 4 92 13 103 3.98e-16 75.1
Msa0961980 MtrunA17_Chr4g0010561 24.204 314 152 12 7 297 43 293 1.26e-15 78.2
Msa0961980 MtrunA17_Chr2g0312551 42.373 118 59 5 7 116 9 125 1.28e-15 73.2
Msa0961980 MtrunA17_Chr4g0010541 25.806 310 152 12 2 297 3 248 4.80e-15 75.9
Msa0961980 MtrunA17_Chr2g0290041 24.161 298 193 10 11 304 9 277 5.98e-15 76.3
Msa0961980 MtrunA17_Chr3g0120931 24.478 335 200 14 8 323 6 306 1.12e-14 75.5
Msa0961980 MtrunA17_Chr2g0290021 24.671 304 192 11 16 311 14 288 1.38e-14 75.1
Msa0961980 MtrunA17_Chr5g0444221 48.193 83 37 2 249 330 1 78 5.69e-14 68.9
Msa0961980 MtrunA17_Chr4g0075791 21.631 282 175 9 6 284 2 240 6.01e-14 72.8
Msa0961980 MtrunA17_Chr6g0481691 63.793 58 20 1 267 323 24 81 8.25e-14 68.9
Msa0961980 MtrunA17_Chr3g0079611 24.214 318 169 12 11 312 45 306 6.15e-13 69.7
Msa0961980 MtrunA17_Chr3g0096301 45.349 86 40 4 217 302 5 83 7.62e-13 63.9
Msa0961980 MtrunA17_Chr2g0289991 23.611 288 177 9 8 286 6 259 7.81e-13 69.7
Msa0961980 MtrunA17_Chr1g0201051 26.718 262 144 10 8 269 16 229 1.26e-12 68.9
Msa0961980 MtrunA17_Chr1g0182421 25.574 305 175 12 11 309 7 265 1.43e-12 68.6
Msa0961980 MtrunA17_Chr1g0199281 27.083 288 155 12 4 288 53 288 2.14e-12 68.2
Msa0961980 MtrunA17_Chr2g0289011 24.382 283 161 11 6 284 2 235 3.54e-12 67.4
Msa0961980 MtrunA17_Chr2g0303011 24.306 288 174 11 7 290 27 274 3.80e-12 67.4
Msa0961980 MtrunA17_Chr2g0291131 25.316 316 188 12 6 315 2 275 4.48e-12 67.0
Msa0961980 MtrunA17_Chr2g0291141 23.220 323 205 12 5 315 2 293 4.80e-12 67.4
Msa0961980 MtrunA17_Chr4g0013651 23.355 304 171 10 3 284 25 288 1.06e-11 65.9
Msa0961980 MtrunA17_Chr1g0182401 24.286 280 164 9 8 284 4 238 1.46e-11 65.5
Msa0961980 MtrunA17_Chr2g0293311 22.680 291 168 10 3 285 1 242 1.67e-11 65.5
Msa0961980 MtrunA17_Chr1g0182431 24.510 306 184 10 6 309 2 262 1.88e-11 65.1
Msa0961980 MtrunA17_Chr8g0355991 38.017 121 64 4 212 330 14 125 3.15e-11 62.4
Msa0961980 MtrunA17_Chr8g0339911 24.194 248 147 7 11 256 4 212 4.12e-11 63.2
Msa0961980 MtrunA17_Chr5g0447741 42.574 101 47 5 225 323 6 97 4.32e-11 60.5
Msa0961980 MtrunA17_Chr8g0361601 24.497 298 167 14 2 290 26 274 4.69e-11 63.5
Msa0961980 MtrunA17_Chr2g0289621 23.264 288 191 10 3 284 1 264 5.02e-11 63.9
Msa0961980 MtrunA17_Chr5g0429741 27.698 278 126 13 1 257 4 227 7.14e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 76 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCGTTATGGACGTATTA+TGG 0.122954 6_3:+84676510 Msa0961980:CDS
TTATATACCTCTATATTATT+TGG 0.137041 6_3:+84676552 Msa0961980:CDS
GAAAATGTTTGTATTGAATT+TGG 0.213557 6_3:+84676805 Msa0961980:CDS
TTGAATGTGTTTGCAAATTA+TGG 0.226590 6_3:+84676029 Msa0961980:CDS
CGGTGAGAGGTTTGAGAATA+AGG 0.253939 6_3:+84676189 Msa0961980:CDS
TGGTATTATCTTCATGGATT+TGG 0.280602 6_3:+84676457 Msa0961980:CDS
ATAAATCTTTAGAACCATTC+TGG 0.288847 6_3:+84676578 Msa0961980:CDS
AGCTTGGCCATTTGGGTACT+TGG 0.292283 6_3:-84676358 None:intergenic
ATAAACTTGGTGGTGTTAAA+TGG 0.297336 6_3:+84676835 Msa0961980:CDS
ACCGGGCATTCGAATTCTTT+TGG 0.306903 6_3:-84678731 None:intergenic
ACTGTTTGGTATTATCTTCA+TGG 0.309105 6_3:+84676451 Msa0961980:CDS
TGTCATACCCGTCTTCTTGA+TGG 0.321370 6_3:-84676318 None:intergenic
TGACATTATAGTCATTTATA+AGG 0.325065 6_3:-84676489 None:intergenic
AGAGATGCACCGACATAATA+AGG 0.333877 6_3:-84676112 None:intergenic
TTCAATGTCTCTGCGTAAAC+CGG 0.337520 6_3:-84678749 None:intergenic
TATATACCTCTATATTATTT+GGG 0.341316 6_3:+84676553 Msa0961980:CDS
GAGGAAGAAGCTTGGCCATT+TGG 0.344148 6_3:-84676366 None:intergenic
CTAGATCAAGATGAAGATTA+TGG 0.348133 6_3:+84676286 Msa0961980:CDS
CTTGCCTCATCAGGTAGAAT+TGG 0.357179 6_3:-84678915 None:intergenic
GACTATAATGTCATTCGTTA+TGG 0.364442 6_3:+84676499 Msa0961980:CDS
AGGAAGAAGCTTGGCCATTT+GGG 0.366595 6_3:-84676365 None:intergenic
ATTCGTTATGGACGTATTAT+GGG 0.387496 6_3:+84676511 Msa0961980:CDS
AATCGCTTGAAAGATTTAAG+AGG 0.392334 6_3:-84676007 None:intergenic
TACAATATCATCAGATATAT+AGG 0.393050 6_3:-84675963 None:intergenic
TCTCTAACAGCATGCATACT+TGG 0.418938 6_3:+84679007 Msa0961980:intron
TAAATCTTTAGAACCATTCT+GGG 0.432860 6_3:+84676579 Msa0961980:CDS
GAACCCAAGTGTACATGAAT+GGG 0.442157 6_3:+84676677 Msa0961980:CDS
ACATGAATGGGGTGTGTCAT+TGG 0.458677 6_3:+84676689 Msa0961980:CDS
GAAAACGAGCGTCTTGAGAA+AGG 0.460841 6_3:+84679104 Msa0961980:CDS
AAAGAGGAGCTGTTACTGAT+AGG 0.462033 6_3:+84679128 Msa0961980:CDS
TGTGTCATTGGTTGTGCGAA+TGG 0.468192 6_3:+84676701 Msa0961980:CDS
ACAAAATCCTTAGCAACGTA+TGG 0.472257 6_3:-84676421 None:intergenic
CACAATAGATTGAACCGGAC+TGG 0.473594 6_3:-84676389 None:intergenic
GCTTGGCCATTTGGGTACTT+GGG 0.475719 6_3:-84676357 None:intergenic
CAAGCTTCTTCCTCCCAGTC+CGG 0.477058 6_3:+84676375 Msa0961980:CDS
GCCAAAAGAATTCGAATGCC+CGG 0.478137 6_3:+84678730 Msa0961980:CDS
ACACCCCATTCATGTACACT+TGG 0.491127 6_3:-84676681 None:intergenic
GACGACACAATAGATTGAAC+CGG 0.492821 6_3:-84676394 None:intergenic
AAGCTATATTTCTCCCAGAA+TGG 0.494828 6_3:-84676592 None:intergenic
GGAACCCAAGTGTACATGAA+TGG 0.499324 6_3:+84676676 Msa0961980:CDS
TAAACTTGGTGGTGTTAAAT+GGG 0.508589 6_3:+84676836 Msa0961980:CDS
GTGGAACCCAAGTACCCAAA+TGG 0.516306 6_3:+84676351 Msa0961980:CDS
AAAACGAGCGTCTTGAGAAA+GGG 0.518552 6_3:+84679105 Msa0961980:CDS
TCTTCACATTCCAGAGAAAA+CGG 0.518776 6_3:-84676652 None:intergenic
GTGTCATTGGTTGTGCGAAT+GGG 0.527872 6_3:+84676702 Msa0961980:CDS
TTTATTCTCTTTCCGGTGAG+AGG 0.528265 6_3:+84676176 Msa0961980:CDS
CTTCGTCGGAAAATATTGTC+TGG 0.529266 6_3:+84676729 Msa0961980:CDS
GCGTCTTGAGAAAGGGAAAG+AGG 0.529863 6_3:+84679112 Msa0961980:CDS
ACAATAGATTGAACCGGACT+GGG 0.534091 6_3:-84676388 None:intergenic
TTTGTATTGAATTTGGAGCA+TGG 0.541268 6_3:+84676812 Msa0961980:CDS
ATCAATCTCCATCAAGAAGA+CGG 0.544345 6_3:+84676310 Msa0961980:CDS
GTCTATCCCATACGTTGCTA+AGG 0.548141 6_3:+84676414 Msa0961980:CDS
TTATCTCCCAAATAATATAG+AGG 0.556804 6_3:-84676559 None:intergenic
TCAATGTCTCTGCGTAAACC+GGG 0.557347 6_3:-84678748 None:intergenic
ATTTGGAGCATGGATAAACT+TGG 0.558416 6_3:+84676822 Msa0961980:CDS
CAAAATCCTTAGCAACGTAT+GGG 0.573774 6_3:-84676420 None:intergenic
TCAATCTCCATCAAGAAGAC+GGG 0.575424 6_3:+84676311 Msa0961980:CDS
ATGATATGAGATGAATGCAA+TGG 0.578517 6_3:-84676860 None:intergenic
TAGATACAATAGACCTCAAG+TGG 0.580845 6_3:+84678889 Msa0961980:CDS
CGGACTGGGAGGAAGAAGCT+TGG 0.587358 6_3:-84676374 None:intergenic
TGCGAATGGGATAGCTTCGT+CGG 0.587622 6_3:+84676715 Msa0961980:CDS
CACCCCATTCATGTACACTT+GGG 0.600305 6_3:-84676680 None:intergenic
CTTATTCTCAAACCTCTCAC+CGG 0.611811 6_3:-84676188 None:intergenic
GATTAGAAAATAAATTGTTG+CGG 0.616666 6_3:-84676090 None:intergenic
GTGTCCAATTCTACCTGATG+AGG 0.627182 6_3:+84678911 Msa0961980:CDS
TGGAGCATGGATAAACTTGG+TGG 0.630900 6_3:+84676825 Msa0961980:CDS
GAGGTATATAACCTTCGTCA+AGG 0.639248 6_3:-84676540 None:intergenic
GTTTACGCAGAGACATTGAA+AGG 0.646133 6_3:+84678752 Msa0961980:CDS
GTAGAATTGGACACCACTTG+AGG 0.653962 6_3:-84678902 None:intergenic
ATAGCTTTAGAAGTAACTCG+TGG 0.664155 6_3:+84676608 Msa0961980:CDS
ATGGGCGACCACCTTGACGA+AGG 0.675010 6_3:+84676529 Msa0961980:CDS
GCTTTAGAAGTAACTCGTGG+AGG 0.675099 6_3:+84676611 Msa0961980:CDS
AACCCAAGTGTACATGAATG+GGG 0.678437 6_3:+84676678 Msa0961980:CDS
GTATATAACCTTCGTCAAGG+TGG 0.690688 6_3:-84676537 None:intergenic
ATAGATTGAACCGGACTGGG+AGG 0.699276 6_3:-84676385 None:intergenic
AATATCATCAGATATATAGG+CGG 0.716629 6_3:-84675960 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAATTTAAACAAAAAATA+AGG - chr6_3:84677674-84677693 None:intergenic 10.0%
!! AAATATTGGAATAATTAAAA+GGG - chr6_3:84678575-84678594 None:intergenic 10.0%
!! AAAATATTGGAATAATTAAA+AGG - chr6_3:84678576-84678595 None:intergenic 10.0%
!! TTATATACCTCTATATTATT+TGG + chr6_3:84676552-84676571 Msa0961980:CDS 15.0%
!! TATATACCTCTATATTATTT+GGG + chr6_3:84676553-84676572 Msa0961980:CDS 15.0%
!!! TACTTTTTACATATCAATTT+TGG + chr6_3:84676894-84676913 Msa0961980:CDS 15.0%
!!! ACTTTTTACATATCAATTTT+GGG + chr6_3:84676895-84676914 Msa0961980:CDS 15.0%
!! ATATTATCTTGTATATAAAG+TGG + chr6_3:84677206-84677225 Msa0961980:intron 15.0%
!!! ACATTTAATTTTCTTATGTT+AGG + chr6_3:84677782-84677801 Msa0961980:intron 15.0%
!! AAATGTAAGAAGAAAAATAT+TGG - chr6_3:84678589-84678608 None:intergenic 15.0%
!!! ATTTTCAGTAAAATTAAACA+AGG + chr6_3:84678654-84678673 Msa0961980:intron 15.0%
!! TACAATATCATCAGATATAT+AGG - chr6_3:84675966-84675985 None:intergenic 20.0%
!! GATTAGAAAATAAATTGTTG+CGG - chr6_3:84676093-84676112 None:intergenic 20.0%
!!! TTTTCTAATCCTTATTATGT+CGG + chr6_3:84676103-84676122 Msa0961980:CDS 20.0%
!!! TTTTGTTTTGGTAGTATTAA+TGG + chr6_3:84676253-84676272 Msa0961980:CDS 20.0%
!! TGACATTATAGTCATTTATA+AGG - chr6_3:84676492-84676511 None:intergenic 20.0%
!! GAAAATGTTTGTATTGAATT+TGG + chr6_3:84676805-84676824 Msa0961980:CDS 20.0%
!!! TTTTATCGTGAATATTACTT+TGG + chr6_3:84677290-84677309 Msa0961980:intron 20.0%
!!! TATAATTTTATTGTTTGCTC+AGG - chr6_3:84678548-84678567 None:intergenic 20.0%
!! ATATAATACTAACTACTAGA+TGG + chr6_3:84678701-84678720 Msa0961980:intron 20.0%
!!! TGTGCATATTTTAATTCTTT+AGG + chr6_3:84678975-84678994 Msa0961980:intron 20.0%
! AATATCATCAGATATATAGG+CGG - chr6_3:84675963-84675982 None:intergenic 25.0%
! TTGAATGTGTTTGCAAATTA+TGG + chr6_3:84676029-84676048 Msa0961980:CDS 25.0%
!!! TACGTTTTTTATTCTCTTTC+CGG + chr6_3:84676169-84676188 Msa0961980:CDS 25.0%
!!! TGTCGTAGAATTTTTTGTTT+TGG + chr6_3:84676241-84676260 Msa0961980:CDS 25.0%
!!! ATTTTGTAAGTGTTACTGTT+TGG + chr6_3:84676437-84676456 Msa0961980:CDS 25.0%
! TTATCTCCCAAATAATATAG+AGG - chr6_3:84676562-84676581 None:intergenic 25.0%
!!! ATAAATCTTTAGAACCATTC+TGG + chr6_3:84676578-84676597 Msa0961980:CDS 25.0%
!!! TAAATCTTTAGAACCATTCT+GGG + chr6_3:84676579-84676598 Msa0961980:CDS 25.0%
!! ATACAAACATTTTCATCTGA+GGG - chr6_3:84676799-84676818 None:intergenic 25.0%
!! AATACAAACATTTTCATCTG+AGG - chr6_3:84676800-84676819 None:intergenic 25.0%
! GAAAAGATAAAGAACTAGTT+TGG + chr6_3:84677023-84677042 Msa0961980:intron 25.0%
! AAGTAGTGAATTATGTCAAT+CGG + chr6_3:84677086-84677105 Msa0961980:intron 25.0%
! CAAGGAAAAATTCTTTCAAA+TGG + chr6_3:84677120-84677139 Msa0961980:intron 25.0%
! ACTTATATGATTGTGCTTAT+TGG + chr6_3:84677182-84677201 Msa0961980:intron 25.0%
! CTTATATGATTGTGCTTATT+GGG + chr6_3:84677183-84677202 Msa0961980:intron 25.0%
!!! TGACTTCATTTTTACTAGTA+TGG + chr6_3:84677261-84677280 Msa0961980:intron 25.0%
! TGAATATTACTTTGGTTAGT+TGG + chr6_3:84677298-84677317 Msa0961980:intron 25.0%
! CTAAATTAGACAAACCAATT+TGG - chr6_3:84677385-84677404 None:intergenic 25.0%
!!! CAAATTGGTTTGTCTAATTT+AGG + chr6_3:84677383-84677402 Msa0961980:intron 25.0%
! AGAGTGAATATAGCAATAAA+GGG - chr6_3:84677513-84677532 None:intergenic 25.0%
! AAGAGTGAATATAGCAATAA+AGG - chr6_3:84677514-84677533 None:intergenic 25.0%
!! ATGAACTATTCGTTCATTTT+AGG + chr6_3:84677750-84677769 Msa0961980:intron 25.0%
! TTCTTATGTTAGGCTATTAT+AGG + chr6_3:84677792-84677811 Msa0961980:intron 25.0%
! AACATTGGTAAATCATGATA+AGG - chr6_3:84678325-84678344 None:intergenic 25.0%
! AATGTGAGTATATACAACAT+TGG - chr6_3:84678340-84678359 None:intergenic 25.0%
! TTGTTTATTCTCGTTTCATA+TGG + chr6_3:84678833-84678852 Msa0961980:intron 25.0%
!! AAGAGGCAATTTTGATAGAA+TGG - chr6_3:84675993-84676012 None:intergenic 30.0%
AATCGCTTGAAAGATTTAAG+AGG - chr6_3:84676010-84676029 None:intergenic 30.0%
CTAGATCAAGATGAAGATTA+TGG + chr6_3:84676286-84676305 Msa0961980:CDS 30.0%
!! GGTATGACAAAATTGTTTTG+TGG + chr6_3:84676332-84676351 Msa0961980:CDS 30.0%
ACTGTTTGGTATTATCTTCA+TGG + chr6_3:84676451-84676470 Msa0961980:CDS 30.0%
TGGTATTATCTTCATGGATT+TGG + chr6_3:84676457-84676476 Msa0961980:CDS 30.0%
GACTATAATGTCATTCGTTA+TGG + chr6_3:84676499-84676518 Msa0961980:CDS 30.0%
ATTCGTTATGGACGTATTAT+GGG + chr6_3:84676511-84676530 Msa0961980:CDS 30.0%
! TTTGTATTGAATTTGGAGCA+TGG + chr6_3:84676812-84676831 Msa0961980:CDS 30.0%
!! ATAAACTTGGTGGTGTTAAA+TGG + chr6_3:84676835-84676854 Msa0961980:CDS 30.0%
!! TAAACTTGGTGGTGTTAAAT+GGG + chr6_3:84676836-84676855 Msa0961980:CDS 30.0%
ATGATATGAGATGAATGCAA+TGG - chr6_3:84676863-84676882 None:intergenic 30.0%
!! ATATCAATTTTGGGTGAGTT+TGG + chr6_3:84676904-84676923 Msa0961980:intron 30.0%
CAATCGGATAACAATATACA+AGG + chr6_3:84677102-84677121 Msa0961980:intron 30.0%
GGAAAAATTCTTTCAAATGG+AGG + chr6_3:84677123-84677142 Msa0961980:intron 30.0%
TTGAGCATTCATTTCCAAAT+TGG + chr6_3:84677368-84677387 Msa0961980:intron 30.0%
GTTTGTCTAATTTAGGAAAG+TGG + chr6_3:84677390-84677409 Msa0961980:intron 30.0%
AGTGATCCCTTCTTATAAAA+AGG + chr6_3:84677591-84677610 Msa0961980:intron 30.0%
GTGATCCCTTCTTATAAAAA+GGG + chr6_3:84677592-84677611 Msa0961980:intron 30.0%
ACATAGAGCTATAATAGAGA+GGG - chr6_3:84677729-84677748 None:intergenic 30.0%
ATGAAAGGAAAGAGAGAAAT+CGG + chr6_3:84677893-84677912 Msa0961980:intron 30.0%
! TTTCCCTCTCATATTTTGTT+TGG - chr6_3:84678001-84678020 None:intergenic 30.0%
AAACAAAATATGAGAGGGAA+AGG + chr6_3:84678000-84678019 Msa0961980:intron 30.0%
AACAAAATATGAGAGGGAAA+GGG + chr6_3:84678001-84678020 Msa0961980:intron 30.0%
GATAAGGAAACTAAAGCAAT+GGG - chr6_3:84678309-84678328 None:intergenic 30.0%
TGATAAGGAAACTAAAGCAA+TGG - chr6_3:84678310-84678329 None:intergenic 30.0%
! TGGGTAATTCCTAAGATTTT+TGG + chr6_3:84678519-84678538 Msa0961980:intron 30.0%
ATCAATCTCCATCAAGAAGA+CGG + chr6_3:84676310-84676329 Msa0961980:CDS 35.0%
CAAAATCCTTAGCAACGTAT+GGG - chr6_3:84676423-84676442 None:intergenic 35.0%
ACAAAATCCTTAGCAACGTA+TGG - chr6_3:84676424-84676443 None:intergenic 35.0%
CATTCGTTATGGACGTATTA+TGG + chr6_3:84676510-84676529 Msa0961980:CDS 35.0%
AAGCTATATTTCTCCCAGAA+TGG - chr6_3:84676595-84676614 None:intergenic 35.0%
!! ATAGCTTTAGAAGTAACTCG+TGG + chr6_3:84676608-84676627 Msa0961980:CDS 35.0%
TCTTCACATTCCAGAGAAAA+CGG - chr6_3:84676655-84676674 None:intergenic 35.0%
!!! TTTTCTCTGGAATGTGAAGA+GGG + chr6_3:84676655-84676674 Msa0961980:CDS 35.0%
!! ACATTTTCATCTGAGGGTAT+GGG - chr6_3:84676793-84676812 None:intergenic 35.0%
! AACATTTTCATCTGAGGGTA+TGG - chr6_3:84676794-84676813 None:intergenic 35.0%
! ATTTGGAGCATGGATAAACT+TGG + chr6_3:84676822-84676841 Msa0961980:CDS 35.0%
TTTAAGTACCCAAATGATCG+AGG + chr6_3:84677051-84677070 Msa0961980:intron 35.0%
! TGGTTTGTCAATCACTGTTA+TGG + chr6_3:84677226-84677245 Msa0961980:intron 35.0%
CATGTTGTGTAATTGGAACT+AGG - chr6_3:84677475-84677494 None:intergenic 35.0%
CTAGTTCCAATTACACAACA+TGG + chr6_3:84677473-84677492 Msa0961980:intron 35.0%
CAATTACACAACATGGACTT+GGG + chr6_3:84677480-84677499 Msa0961980:intron 35.0%
GTGAATATAGCAATAAAGGG+TGG - chr6_3:84677510-84677529 None:intergenic 35.0%
TCCCTTCTTATAAAAAGGGA+CGG + chr6_3:84677596-84677615 Msa0961980:intron 35.0%
! TCCGTCCCTTTTTATAAGAA+GGG - chr6_3:84677600-84677619 None:intergenic 35.0%
! ATCCGTCCCTTTTTATAAGA+AGG - chr6_3:84677601-84677620 None:intergenic 35.0%
TTCTTATAAAAAGGGACGGA+TGG + chr6_3:84677600-84677619 Msa0961980:intron 35.0%
GACATAGAGCTATAATAGAG+AGG - chr6_3:84677730-84677749 None:intergenic 35.0%
GCTATATTGTGTGAAAATGG+TGG - chr6_3:84677833-84677852 None:intergenic 35.0%
GCAGCTATATTGTGTGAAAA+TGG - chr6_3:84677836-84677855 None:intergenic 35.0%
TCACACAATATAGCTGCTTA+CGG + chr6_3:84677839-84677858 Msa0961980:intron 35.0%
! CAGATGATCTGAGATATGAA+AGG + chr6_3:84677878-84677897 Msa0961980:intron 35.0%
TGAAAGGAAAGAGAGAAATC+GGG + chr6_3:84677894-84677913 Msa0961980:intron 35.0%
! TTGTGTTGATCAAGAATCAG+TGG - chr6_3:84678123-84678142 None:intergenic 35.0%
GATTCTTGATCAACACAATC+TGG + chr6_3:84678125-84678144 Msa0961980:intron 35.0%
TATCTCGTTTACTAAGTGCA+GGG + chr6_3:84678184-84678203 Msa0961980:intron 35.0%
! ATGTTGTTGCTTCTACAAAG+AGG + chr6_3:84678253-84678272 Msa0961980:intron 35.0%
! TGTTGTTGCTTCTACAAAGA+GGG + chr6_3:84678254-84678273 Msa0961980:intron 35.0%
CAATGTTCACGAACATTTGA+AGG + chr6_3:84678371-84678390 Msa0961980:intron 35.0%
TTTGAAGGACACACTCTTAT+TGG + chr6_3:84678386-84678405 Msa0961980:intron 35.0%
!!! GTGGTTTTGGAAAGTCATTT+GGG - chr6_3:84678493-84678512 None:intergenic 35.0%
!!! TGTGGTTTTGGAAAGTCATT+TGG - chr6_3:84678494-84678513 None:intergenic 35.0%
ATGACTTTCCAAAACCACAA+AGG + chr6_3:84678495-84678514 Msa0961980:intron 35.0%
TTTCCAAAACCACAAAGGTT+GGG + chr6_3:84678500-84678519 Msa0961980:intron 35.0%
GAATAAACAACCATAAGCTG+AGG - chr6_3:84678823-84678842 None:intergenic 35.0%
TAGATACAATAGACCTCAAG+TGG + chr6_3:84678889-84678908 Msa0961980:CDS 35.0%
AGCATGAAGAGAAAAAGAAG+CGG + chr6_3:84679063-84679082 Msa0961980:CDS 35.0%
! AGAGATGCACCGACATAATA+AGG - chr6_3:84676115-84676134 None:intergenic 40.0%
TTTATTCTCTTTCCGGTGAG+AGG + chr6_3:84676176-84676195 Msa0961980:CDS 40.0%
CTTATTCTCAAACCTCTCAC+CGG - chr6_3:84676191-84676210 None:intergenic 40.0%
TCAATCTCCATCAAGAAGAC+GGG + chr6_3:84676311-84676330 Msa0961980:CDS 40.0%
ACAATAGATTGAACCGGACT+GGG - chr6_3:84676391-84676410 None:intergenic 40.0%
GACGACACAATAGATTGAAC+CGG - chr6_3:84676397-84676416 None:intergenic 40.0%
GTATATAACCTTCGTCAAGG+TGG - chr6_3:84676540-84676559 None:intergenic 40.0%
GAGGTATATAACCTTCGTCA+AGG - chr6_3:84676543-84676562 None:intergenic 40.0%
!!! GTTTTCTCTGGAATGTGAAG+AGG + chr6_3:84676654-84676673 Msa0961980:CDS 40.0%
GAACCCAAGTGTACATGAAT+GGG + chr6_3:84676677-84676696 Msa0961980:CDS 40.0%
AACCCAAGTGTACATGAATG+GGG + chr6_3:84676678-84676697 Msa0961980:CDS 40.0%
CTTCGTCGGAAAATATTGTC+TGG + chr6_3:84676729-84676748 Msa0961980:CDS 40.0%
!! AATTTTGGGTGAGTTTGGTG+TGG + chr6_3:84676909-84676928 Msa0961980:intron 40.0%
! ACAAGATAACGGTCCAACAA+TGG - chr6_3:84676954-84676973 None:intergenic 40.0%
CCAAGTCCATGTTGTGTAAT+TGG - chr6_3:84677482-84677501 None:intergenic 40.0%
CCAATTACACAACATGGACT+TGG + chr6_3:84677479-84677498 Msa0961980:intron 40.0%
CTTACGGAGAGAAAAGATGT+AGG + chr6_3:84677855-84677874 Msa0961980:intron 40.0%
! GGAGAGAAAAACAGAAGTGT+TGG + chr6_3:84677915-84677934 Msa0961980:intron 40.0%
GCGCCAAACAAAATATGAGA+GGG + chr6_3:84677995-84678014 Msa0961980:intron 40.0%
TCTTGATCAACACAATCTGG+TGG + chr6_3:84678128-84678147 Msa0961980:intron 40.0%
CTATCTCGTTTACTAAGTGC+AGG + chr6_3:84678183-84678202 Msa0961980:intron 40.0%
ATCTCGTTTACTAAGTGCAG+GGG + chr6_3:84678185-84678204 Msa0961980:intron 40.0%
GAAACTAAAGCAATGGGCAA+TGG - chr6_3:84678303-84678322 None:intergenic 40.0%
! GATAATTGCAAGAGTGTGAG+AGG - chr6_3:84678423-84678442 None:intergenic 40.0%
TGGTTATGTTGCGTTGTTGT+GGG - chr6_3:84678462-84678481 None:intergenic 40.0%
! AAGTCATTTGGGATGTGAAG+TGG - chr6_3:84678482-84678501 None:intergenic 40.0%
CTTTCCAAAACCACAAAGGT+TGG + chr6_3:84678499-84678518 Msa0961980:intron 40.0%
! TTACCCAACCTTTGTGGTTT+TGG - chr6_3:84678506-84678525 None:intergenic 40.0%
TAGGAATTACCCAACCTTTG+TGG - chr6_3:84678512-84678531 None:intergenic 40.0%
CTCAGGACACCAAAAATCTT+AGG - chr6_3:84678531-84678550 None:intergenic 40.0%
TTCAATGTCTCTGCGTAAAC+CGG - chr6_3:84678752-84678771 None:intergenic 40.0%
GTTTACGCAGAGACATTGAA+AGG + chr6_3:84678752-84678771 Msa0961980:CDS 40.0%
GGTCAAATATCCTCAGCTTA+TGG + chr6_3:84678810-84678829 Msa0961980:intron 40.0%
AGAGAAAAACTTGCCTCATC+AGG - chr6_3:84678927-84678946 None:intergenic 40.0%
TCTCTAACAGCATGCATACT+TGG + chr6_3:84679007-84679026 Msa0961980:intron 40.0%
ATGAAGAGAAAAAGAAGCGG+TGG + chr6_3:84679066-84679085 Msa0961980:CDS 40.0%
AAAACGAGCGTCTTGAGAAA+GGG + chr6_3:84679105-84679124 Msa0961980:CDS 40.0%
AAAGAGGAGCTGTTACTGAT+AGG + chr6_3:84679128-84679147 Msa0961980:CDS 40.0%
CGGTGAGAGGTTTGAGAATA+AGG + chr6_3:84676189-84676208 Msa0961980:CDS 45.0%
TGTCATACCCGTCTTCTTGA+TGG - chr6_3:84676321-84676340 None:intergenic 45.0%
AGGAAGAAGCTTGGCCATTT+GGG - chr6_3:84676368-84676387 None:intergenic 45.0%
CACAATAGATTGAACCGGAC+TGG - chr6_3:84676392-84676411 None:intergenic 45.0%
GTCTATCCCATACGTTGCTA+AGG + chr6_3:84676414-84676433 Msa0961980:CDS 45.0%
!! GCTTTAGAAGTAACTCGTGG+AGG + chr6_3:84676611-84676630 Msa0961980:CDS 45.0%
!!! TGTTGACATGCCGTTTTCTC+TGG + chr6_3:84676642-84676661 Msa0961980:CDS 45.0%
GGAACCCAAGTGTACATGAA+TGG + chr6_3:84676676-84676695 Msa0961980:CDS 45.0%
CACCCCATTCATGTACACTT+GGG - chr6_3:84676683-84676702 None:intergenic 45.0%
ACACCCCATTCATGTACACT+TGG - chr6_3:84676684-84676703 None:intergenic 45.0%
ACATGAATGGGGTGTGTCAT+TGG + chr6_3:84676689-84676708 Msa0961980:CDS 45.0%
! TGTGTCATTGGTTGTGCGAA+TGG + chr6_3:84676701-84676720 Msa0961980:CDS 45.0%
! GTGTCATTGGTTGTGCGAAT+GGG + chr6_3:84676702-84676721 Msa0961980:CDS 45.0%
TGGAGCATGGATAAACTTGG+TGG + chr6_3:84676825-84676844 Msa0961980:CDS 45.0%
!! AGTTTGGTGTGGAGGAATCA+TGG + chr6_3:84676920-84676939 Msa0961980:intron 45.0%
CATGGACCAAACTCCATTGT+TGG + chr6_3:84676938-84676957 Msa0961980:intron 45.0%
AACGGTCCAACAATGGAGTT+TGG - chr6_3:84676947-84676966 None:intergenic 45.0%
GGACGCTCAACACAAGATAA+CGG - chr6_3:84676965-84676984 None:intergenic 45.0%
AAGTACCCAAATGATCGAGG+AGG + chr6_3:84677054-84677073 Msa0961980:intron 45.0%
ACCAACCTCCTCGATCATTT+GGG - chr6_3:84677062-84677081 None:intergenic 45.0%
AACCAACCTCCTCGATCATT+TGG - chr6_3:84677063-84677082 None:intergenic 45.0%
CGCGCCAAACAAAATATGAG+AGG + chr6_3:84677994-84678013 Msa0961980:intron 45.0%
AGAGAGAGAGAAAGCAGTGT+TGG + chr6_3:84678058-84678077 Msa0961980:intron 45.0%
GTGGTGTAAGAGAAACCATG+TGG - chr6_3:84678104-84678123 None:intergenic 45.0%
AACACAATCTGGTGGAGAGA+CGG + chr6_3:84678136-84678155 Msa0961980:intron 45.0%
ACTAAGTGCAGGGGTTTAGT+TGG + chr6_3:84678194-84678213 Msa0961980:intron 45.0%
GGTTATGTTGCGTTGTTGTG+GGG - chr6_3:84678461-84678480 None:intergenic 45.0%
GTGGTTATGTTGCGTTGTTG+TGG - chr6_3:84678463-84678482 None:intergenic 45.0%
GCCAAAAGAATTCGAATGCC+CGG + chr6_3:84678730-84678749 Msa0961980:CDS 45.0%
! ACCGGGCATTCGAATTCTTT+TGG - chr6_3:84678734-84678753 None:intergenic 45.0%
TCAATGTCTCTGCGTAAACC+GGG - chr6_3:84678751-84678770 None:intergenic 45.0%
TCTCTCTCTCTGCTTGCATT+TGG + chr6_3:84678789-84678808 Msa0961980:intron 45.0%
GTAGAATTGGACACCACTTG+AGG - chr6_3:84678905-84678924 None:intergenic 45.0%
GTGTCCAATTCTACCTGATG+AGG + chr6_3:84678911-84678930 Msa0961980:CDS 45.0%
CTTGCCTCATCAGGTAGAAT+TGG - chr6_3:84678918-84678937 None:intergenic 45.0%
GAAAACGAGCGTCTTGAGAA+AGG + chr6_3:84679104-84679123 Msa0961980:CDS 45.0%
GTGGAACCCAAGTACCCAAA+TGG + chr6_3:84676351-84676370 Msa0961980:CDS 50.0%
GCTTGGCCATTTGGGTACTT+GGG - chr6_3:84676360-84676379 None:intergenic 50.0%
AGCTTGGCCATTTGGGTACT+TGG - chr6_3:84676361-84676380 None:intergenic 50.0%
GAGGAAGAAGCTTGGCCATT+TGG - chr6_3:84676369-84676388 None:intergenic 50.0%
! ATAGATTGAACCGGACTGGG+AGG - chr6_3:84676388-84676407 None:intergenic 50.0%
TGCGAATGGGATAGCTTCGT+CGG + chr6_3:84676715-84676734 Msa0961980:CDS 50.0%
!! TTTGGGTGAGTTTGGTGTGG+AGG + chr6_3:84676912-84676931 Msa0961980:intron 50.0%
TCTTGTGTTGAGCGTCCTCT+TGG + chr6_3:84676968-84676987 Msa0961980:intron 50.0%
ACCCAAATGATCGAGGAGGT+TGG + chr6_3:84677058-84677077 Msa0961980:intron 50.0%
! AAGCAGTGTTGGACTACCTG+CGG + chr6_3:84678069-84678088 Msa0961980:intron 50.0%
TTGTTGTGGGGTCGATTGGT+AGG - chr6_3:84678449-84678468 None:intergenic 50.0%
GCGTCTTGAGAAAGGGAAAG+AGG + chr6_3:84679112-84679131 Msa0961980:CDS 50.0%
CAAGCTTCTTCCTCCCAGTC+CGG + chr6_3:84676375-84676394 Msa0961980:CDS 55.0%
TGTTGAGCGTCCTCTTGGAG+TGG + chr6_3:84676973-84676992 Msa0961980:intron 55.0%
GTTGAGCGTCCTCTTGGAGT+GGG + chr6_3:84676974-84676993 Msa0961980:intron 55.0%
CCTTTCGTTCCCACTCCAAG+AGG - chr6_3:84676986-84677005 None:intergenic 55.0%
CCTCTTGGAGTGGGAACGAA+AGG + chr6_3:84676983-84677002 Msa0961980:intron 55.0%
!! CATGTGGTTTGTTTCGCCGC+AGG - chr6_3:84678088-84678107 None:intergenic 55.0%
CTGCGGCGAAACAAACCACA+TGG + chr6_3:84678086-84678105 Msa0961980:intron 55.0%
ACAATCTGGTGGAGAGACGG+TGG + chr6_3:84678139-84678158 Msa0961980:intron 55.0%
TGCGTTGTTGTGGGGTCGAT+TGG - chr6_3:84678453-84678472 None:intergenic 55.0%
! CGGACTGGGAGGAAGAAGCT+TGG - chr6_3:84676377-84676396 None:intergenic 60.0%
ATGGGCGACCACCTTGACGA+AGG + chr6_3:84676529-84676548 Msa0961980:CDS 60.0%
GGTGGAGAGACGGTGGATCT+CGG + chr6_3:84678146-84678165 Msa0961980:intron 60.0%
GTGGAGAGACGGTGGATCTC+GGG + chr6_3:84678147-84678166 Msa0961980:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 84675947 84679154 84675947 ID=Msa0961980;Name=Msa0961980
chr6_3 mRNA 84675947 84679154 84675947 ID=Msa0961980-mRNA-1;Parent=Msa0961980;Name=Msa0961980-mRNA-1;_AED=0.87;_eAED=0.87;_QI=0|0|0|0.75|1|1|4|0|408
chr6_3 exon 84675947 84676916 84675947 ID=Msa0961980-mRNA-1:exon:15209;Parent=Msa0961980-mRNA-1
chr6_3 exon 84678720 84678773 84678720 ID=Msa0961980-mRNA-1:exon:15210;Parent=Msa0961980-mRNA-1
chr6_3 exon 84678868 84678932 84678868 ID=Msa0961980-mRNA-1:exon:15211;Parent=Msa0961980-mRNA-1
chr6_3 exon 84679017 84679154 84679017 ID=Msa0961980-mRNA-1:exon:15212;Parent=Msa0961980-mRNA-1
chr6_3 CDS 84675947 84676916 84675947 ID=Msa0961980-mRNA-1:cds;Parent=Msa0961980-mRNA-1
chr6_3 CDS 84678720 84678773 84678720 ID=Msa0961980-mRNA-1:cds;Parent=Msa0961980-mRNA-1
chr6_3 CDS 84678868 84678932 84678868 ID=Msa0961980-mRNA-1:cds;Parent=Msa0961980-mRNA-1
chr6_3 CDS 84679017 84679154 84679017 ID=Msa0961980-mRNA-1:cds;Parent=Msa0961980-mRNA-1
Gene Sequence

>Msa0961980

ATGAAGGTGAGCACCGCCTATATATCTGATGATATTGTATTTGCCATTCTATCAAAATTGCCTCTTAAATCTTTCAAGCGATTTGAATGTGTTTGCAAATTATGGTCTCTTTTATTTGAAAACACTTATTTCATGAACATGTGCCGCAACAATTTATTTTCTAATCCTTATTATGTCGGTGCATCTCTACTCTTCAAAGTTAATGATAAAACAATTTGTGATTACGTTTTTTATTCTCTTTCCGGTGAGAGGTTTGAGAATAAGGTCAAATTAGATATCTCTAATTCATTTAACTGTCGTAGAATTTTTTGTTTTGGTAGTATTAATGGCACACTTTGTCTAGATCAAGATGAAGATTATGGCATCAATCTCCATCAAGAAGACGGGTATGACAAAATTGTTTTGTGGAACCCAAGTACCCAAATGGCCAAGCTTCTTCCTCCCAGTCCGGTTCAATCTATTGTGTCGTCTATCCCATACGTTGCTAAGGATTTTGTAAGTGTTACTGTTTGGTATTATCTTCATGGATTTGGCTATGATTACCTTATAAATGACTATAATGTCATTCGTTATGGACGTATTATGGGCGACCACCTTGACGAAGGTTATATACCTCTATATTATTTGGGAGATAAATCTTTAGAACCATTCTGGGAGAAATATAGCTTTAGAAGTAACTCGTGGAGGAAGCTTGATGTTGACATGCCGTTTTCTCTGGAATGTGAAGAGGGAACCCAAGTGTACATGAATGGGGTGTGTCATTGGTTGTGCGAATGGGATAGCTTCGTCGGAAAATATTGTCTGGTATCATTTTACTTGAGCAATGAGATGTTTTTCATAACACCCATACCCTCAGATGAAAATGTTTGTATTGAATTTGGAGCATGGATAAACTTGGTGGTGTTAAATGGGTCCATTGCATTCATCTCATATCATAAAAAGACGACTACTTTTTACATATCAATTTTGGATGGTGAGAAGCCAAAAGAATTCGAATGCCCGGTTTACGCAGAGACATTGAAAGTCTATAACAAGCTGAAAGATATAGATACAATAGACCTCAAGTGGTGTCCAATTCTACCTGATGAGCATGCATACTTGGAGCATGAGAAAGAGTTTGCTGAACTCTTCAAGAAGCATGAAGAGAAAAAGAAGCGGTGGATGCTGATTGAAGAAGAAAACGAGCGTCTTGAGAAAGGGAAAGAGGAGCTGTTACTGATAGGTTGA
Protein sequence

>Msa0961980

MKVSTAYISDDIVFAILSKLPLKSFKRFECVCKLWSLLFENTYFMNMCRNNLFSNPYYVGASLLFKVNDKTICDYVFYSLSGERFENKVKLDISNSFNCRRIFCFGSINGTLCLDQDEDYGINLHQEDGYDKIVLWNPSTQMAKLLPPSPVQSIVSSIPYVAKDFVSVTVWYYLHGFGYDYLINDYNVIRYGRIMGDHLDEGYIPLYYLGDKSLEPFWEKYSFRSNSWRKLDVDMPFSLECEEGTQVYMNGVCHWLCEWDSFVGKYCLVSFYLSNEMFFITPIPSDENVCIEFGAWINLVVLNGSIAFISYHKKTTTFYISILDGEKPKEFECPVYAETLKVYNKLKDIDTIDLKWCPILPDEHAYLEHEKEFAELFKKHEEKKKRWMLIEEENERLEKGKEELLLIG*