Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404020 | AES94187.2 | 65.891 | 129 | 30 | 4 | 91 | 210 | 166 | 289 | 7.39e-36 | 143 |
Msa1404020 | AES94187.2 | 70.085 | 117 | 30 | 1 | 8 | 124 | 3 | 114 | 3.49e-41 | 157 |
Msa1404020 | AES94187.2 | 90.050 | 201 | 15 | 2 | 172 | 368 | 93 | 292 | 9.18e-115 | 345 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404020 | sp|Q8VYJ2|AHL1_ARATH | 53.988 | 163 | 71 | 2 | 206 | 364 | 155 | 317 | 3.03e-46 | 164 |
Msa1404020 | sp|Q8VYJ2|AHL1_ARATH | 40.870 | 230 | 64 | 6 | 51 | 209 | 89 | 317 | 3.33e-36 | 137 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404020 | G7KG59 | 65.891 | 129 | 30 | 4 | 91 | 210 | 166 | 289 | 3.53e-36 | 143 |
Msa1404020 | G7KG59 | 70.085 | 117 | 30 | 1 | 8 | 124 | 3 | 114 | 1.67e-41 | 157 |
Msa1404020 | G7KG59 | 90.050 | 201 | 15 | 2 | 172 | 368 | 93 | 292 | 4.38e-115 | 345 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0017510 | Msa1404020 | 0.808562 | 2.914567e-50 | -8.615850e-47 |
Msa0095970 | Msa1404020 | 0.974920 | 5.178415e-139 | -8.615850e-47 |
Msa1397860 | Msa1404020 | 0.805113 | 1.561132e-49 | -8.615850e-47 |
Msa0701010 | Msa1404020 | 0.823704 | 1.199906e-53 | -8.615850e-47 |
Msa0731940 | Msa1404020 | 0.821443 | 4.027882e-53 | -8.615850e-47 |
Msa0810220 | Msa1404020 | 0.815747 | 7.889110e-52 | -8.615850e-47 |
Msa0833290 | Msa1404020 | 0.856494 | 3.097537e-62 | -8.615850e-47 |
Msa0833300 | Msa1404020 | 0.860300 | 2.273562e-63 | -8.615850e-47 |
Msa0153910 | Msa1404020 | 0.813030 | 3.145070e-51 | -8.615850e-47 |
Msa0157290 | Msa1404020 | 0.808813 | 2.575817e-50 | -8.615850e-47 |
Msa0180500 | Msa1404020 | 0.804863 | 1.760755e-49 | -8.615850e-47 |
Msa0188460 | Msa1404020 | 0.806253 | 9.000584e-50 | -8.615850e-47 |
Msa0208090 | Msa1404020 | 0.807666 | 4.522514e-50 | -8.615850e-47 |
Msa0231000 | Msa1404020 | 0.817692 | 2.889965e-52 | -8.615850e-47 |
Msa1249490 | Msa1404020 | 0.805015 | 1.636893e-49 | -8.615850e-47 |
Msa1276890 | Msa1404020 | 0.823729 | 1.183904e-53 | -8.615850e-47 |
Msa1285930 | Msa1404020 | 0.802098 | 6.591423e-49 | -8.615850e-47 |
Msa0402290 | Msa1404020 | 0.821662 | 3.584215e-53 | -8.615850e-47 |
Msa0414410 | Msa1404020 | 0.803849 | 2.864896e-49 | -8.615850e-47 |
Msa0424320 | Msa1404020 | 0.834338 | 3.174894e-56 | -8.615850e-47 |
Msa0436780 | Msa1404020 | 0.801581 | 8.417720e-49 | -8.615850e-47 |
Msa0998690 | Msa1404020 | 0.819874 | 9.232853e-53 | -8.615850e-47 |
Msa1014540 | Msa1404020 | 0.813395 | 2.615933e-51 | -8.615850e-47 |
Msa1016280 | Msa1404020 | 0.813353 | 2.671682e-51 | -8.615850e-47 |
Msa1085740 | Msa1404020 | 0.800627 | 1.318757e-48 | -8.615850e-47 |
Msa1100980 | Msa1404020 | 0.801218 | 9.990121e-49 | -8.615850e-47 |
Msa0275000 | Msa1404020 | 0.804674 | 1.928428e-49 | -8.615850e-47 |
Msa0321310 | Msa1404020 | 0.810197 | 1.299094e-50 | -8.615850e-47 |
Msa0355220 | Msa1404020 | 0.811711 | 6.105871e-51 | -8.615850e-47 |
Msa1109440 | Msa1404020 | 0.823963 | 1.043350e-53 | -8.615850e-47 |
Msa1121200 | Msa1404020 | 0.812322 | 4.494734e-51 | -8.615850e-47 |
Msa1136090 | Msa1404020 | 0.802871 | 4.567214e-49 | -8.615850e-47 |
Msa1137570 | Msa1404020 | 0.809589 | 1.756345e-50 | -8.615850e-47 |
Msa1149360 | Msa1404020 | 0.801116 | 1.047986e-48 | -8.615850e-47 |
Msa1174910 | Msa1404020 | 0.840344 | 9.202952e-58 | -8.615850e-47 |
Msa1184420 | Msa1404020 | 0.802512 | 5.417678e-49 | -8.615850e-47 |
Msa0498650 | Msa1404020 | 0.808676 | 2.755362e-50 | -8.615850e-47 |
Msa0523940 | Msa1404020 | 0.817638 | 2.972041e-52 | -8.615850e-47 |
Msa0529040 | Msa1404020 | 0.813674 | 2.271109e-51 | -8.615850e-47 |
Msa0534540 | Msa1404020 | 0.802724 | 4.897395e-49 | -8.615850e-47 |
Msa0598780 | Msa1404020 | 0.829366 | 5.360061e-55 | -8.615850e-47 |
Msa0857680 | Msa1404020 | 0.808533 | 2.955639e-50 | -8.615850e-47 |
Msa0877250 | Msa1404020 | 0.830889 | 2.277182e-55 | -8.615850e-47 |
Msa0880140 | Msa1404020 | 0.802577 | 5.250948e-49 | -8.615850e-47 |
Msa0885280 | Msa1404020 | 0.802630 | 5.121593e-49 | -8.615850e-47 |
Msa0888420 | Msa1404020 | 0.803938 | 2.744468e-49 | -8.615850e-47 |
Msa0907260 | Msa1404020 | 0.843897 | 1.056013e-58 | -8.615850e-47 |
Msa0914760 | Msa1404020 | 0.823371 | 1.435907e-53 | -8.615850e-47 |
Msa0947660 | Msa1404020 | 0.801177 | 1.018239e-48 | -8.615850e-47 |
Msa0956270 | Msa1404020 | 0.843457 | 1.384798e-58 | -8.615850e-47 |
Msa0961980 | Msa1404020 | 0.804862 | 1.761857e-49 | -8.615850e-47 |
Msa0976670 | Msa1404020 | 0.802937 | 4.425196e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404020 | MtrunA17_Chr5g0398621 | 92.638 | 163 | 7 | 2 | 210 | 368 | 86 | 247 | 4.06e-99 | 294 |
Msa1404020 | MtrunA17_Chr5g0398621 | 63.563 | 247 | 41 | 5 | 8 | 210 | 3 | 244 | 1.91e-88 | 266 |
Msa1404020 | MtrunA17_Chr5g0398601 | 77.358 | 106 | 24 | 0 | 135 | 240 | 1 | 106 | 8.46e-45 | 161 |
Msa1404020 | MtrunA17_Chr5g0398601 | 68.000 | 75 | 18 | 2 | 295 | 365 | 4 | 76 | 1.57e-18 | 87.0 |
Msa1404020 | MtrunA17_Chr7g0245841 | 53.261 | 184 | 77 | 2 | 165 | 347 | 78 | 253 | 9.42e-42 | 149 |
Msa1404020 | MtrunA17_Chr7g0245841 | 39.773 | 264 | 90 | 7 | 10 | 213 | 28 | 282 | 3.29e-30 | 118 |
Msa1404020 | MtrunA17_Chr4g0056761 | 47.619 | 210 | 100 | 3 | 152 | 360 | 84 | 284 | 4.51e-39 | 142 |
Msa1404020 | MtrunA17_Chr4g0056761 | 40.217 | 276 | 86 | 6 | 11 | 208 | 17 | 291 | 4.10e-32 | 123 |
Msa1404020 | MtrunA17_Chr8g0351761 | 56.115 | 139 | 60 | 1 | 210 | 347 | 131 | 269 | 9.79e-37 | 136 |
Msa1404020 | MtrunA17_Chr8g0351761 | 40.191 | 209 | 63 | 4 | 51 | 197 | 71 | 279 | 1.59e-27 | 111 |
Msa1404020 | MtrunA17_Chr1g0179461 | 43.590 | 156 | 85 | 2 | 207 | 359 | 131 | 286 | 3.12e-35 | 132 |
Msa1404020 | MtrunA17_Chr1g0179461 | 32.721 | 272 | 103 | 9 | 51 | 255 | 69 | 327 | 4.02e-27 | 110 |
Msa1404020 | MtrunA17_Chr1g0188211 | 55.172 | 145 | 63 | 2 | 213 | 356 | 126 | 269 | 1.20e-32 | 125 |
Msa1404020 | MtrunA17_Chr1g0188211 | 39.035 | 228 | 66 | 5 | 51 | 205 | 49 | 276 | 4.45e-28 | 112 |
Msa1404020 | MtrunA17_Chr8g0386741 | 36.646 | 161 | 90 | 2 | 210 | 359 | 155 | 314 | 7.41e-28 | 112 |
Msa1404020 | MtrunA17_Chr8g0386741 | 34.322 | 236 | 91 | 6 | 49 | 221 | 95 | 329 | 2.28e-26 | 107 |
Msa1404020 | MtrunA17_Chr6g0476061 | 45.070 | 142 | 74 | 1 | 219 | 360 | 128 | 265 | 2.36e-27 | 110 |
Msa1404020 | MtrunA17_Chr6g0476061 | 48.624 | 109 | 51 | 1 | 93 | 196 | 156 | 264 | 6.40e-21 | 92.0 |
Msa1404020 | MtrunA17_Chr5g0398591 | 62.500 | 96 | 24 | 3 | 275 | 366 | 13 | 100 | 5.20e-27 | 103 |
Msa1404020 | MtrunA17_Chr5g0398591 | 58.065 | 93 | 36 | 1 | 121 | 213 | 13 | 102 | 1.31e-25 | 100 |
Msa1404020 | MtrunA17_Chr5g0397551 | 42.969 | 128 | 72 | 1 | 210 | 337 | 123 | 249 | 5.36e-27 | 108 |
Msa1404020 | MtrunA17_Chr5g0397551 | 35.533 | 197 | 73 | 4 | 35 | 178 | 54 | 249 | 1.63e-24 | 102 |
Msa1404020 | MtrunA17_Chr4g0054661 | 45.299 | 117 | 63 | 1 | 221 | 337 | 142 | 257 | 2.77e-26 | 107 |
Msa1404020 | MtrunA17_Chr4g0054661 | 33.862 | 189 | 66 | 4 | 51 | 181 | 73 | 260 | 4.17e-20 | 90.1 |
Msa1404020 | MtrunA17_Chr7g0247431 | 38.095 | 147 | 91 | 0 | 206 | 352 | 142 | 288 | 9.63e-26 | 106 |
Msa1404020 | MtrunA17_Chr7g0247431 | 32.227 | 211 | 83 | 4 | 40 | 193 | 81 | 288 | 2.83e-17 | 82.0 |
Msa1404020 | MtrunA17_Chr8g0349091 | 37.356 | 174 | 96 | 3 | 206 | 367 | 140 | 312 | 1.31e-25 | 105 |
Msa1404020 | MtrunA17_Chr8g0349091 | 34.247 | 219 | 79 | 5 | 49 | 202 | 87 | 305 | 3.09e-20 | 90.5 |
Msa1404020 | MtrunA17_Chr1g0190011 | 38.043 | 184 | 61 | 5 | 47 | 177 | 39 | 222 | 1.26e-22 | 97.1 |
Msa1404020 | MtrunA17_Chr1g0190011 | 43.902 | 123 | 64 | 3 | 221 | 341 | 109 | 228 | 8.49e-22 | 94.7 |
Msa1404020 | MtrunA17_Chr7g0274821 | 47.863 | 117 | 58 | 1 | 221 | 337 | 143 | 256 | 1.84e-20 | 91.7 |
Msa1404020 | MtrunA17_Chr7g0274821 | 52.174 | 92 | 42 | 1 | 95 | 184 | 171 | 262 | 5.72e-16 | 78.6 |
Msa1404020 | MtrunA17_Chr4g0027331 | 37.778 | 135 | 81 | 2 | 206 | 337 | 4 | 138 | 2.87e-20 | 85.9 |
Msa1404020 | MtrunA17_Chr4g0027331 | 41.593 | 113 | 58 | 2 | 73 | 178 | 27 | 138 | 2.24e-16 | 75.1 |
Msa1404020 | MtrunA17_Chr4g0027351 | 40.157 | 127 | 73 | 2 | 206 | 331 | 4 | 128 | 1.19e-19 | 84.3 |
Msa1404020 | MtrunA17_Chr4g0027351 | 48.544 | 103 | 49 | 3 | 73 | 172 | 27 | 128 | 9.90e-18 | 79.0 |
Msa1404020 | MtrunA17_Chr4g0027371 | 35.172 | 145 | 91 | 2 | 206 | 347 | 4 | 148 | 7.65e-19 | 84.7 |
Msa1404020 | MtrunA17_Chr4g0027371 | 36.029 | 136 | 79 | 2 | 73 | 201 | 27 | 161 | 1.67e-14 | 72.4 |
Msa1404020 | MtrunA17_Chr6g0476241 | 41.667 | 132 | 72 | 4 | 214 | 345 | 170 | 296 | 4.39e-18 | 84.0 |
Msa1404020 | MtrunA17_Chr6g0476241 | 45.833 | 96 | 49 | 2 | 93 | 186 | 202 | 296 | 3.81e-14 | 72.4 |
Msa1404020 | MtrunA17_Chr1g0165101 | 38.571 | 140 | 66 | 4 | 214 | 336 | 142 | 278 | 9.98e-18 | 83.6 |
Msa1404020 | MtrunA17_Chr4g0027301 | 36.986 | 146 | 76 | 5 | 193 | 331 | 3 | 139 | 3.74e-15 | 72.0 |
Msa1404020 | MtrunA17_Chr4g0027301 | 38.318 | 107 | 58 | 2 | 73 | 172 | 34 | 139 | 2.10e-11 | 61.2 |
Msa1404020 | MtrunA17_Chr3g0133051 | 36.449 | 107 | 60 | 3 | 94 | 194 | 128 | 232 | 1.01e-13 | 70.9 |
Msa1404020 | MtrunA17_Chr3g0133051 | 29.688 | 128 | 89 | 1 | 221 | 347 | 101 | 228 | 3.75e-13 | 69.3 |
Msa1404020 | MtrunA17_Chr5g0417581 | 31.667 | 120 | 80 | 2 | 212 | 330 | 10 | 128 | 7.16e-12 | 63.9 |
Msa1404020 | MtrunA17_Chr5g0427311 | 28.662 | 157 | 106 | 4 | 201 | 353 | 60 | 214 | 4.49e-11 | 62.4 |
Msa1404020 | MtrunA17_Chr3g0112131 | 44.086 | 93 | 49 | 2 | 95 | 185 | 134 | 225 | 6.62e-11 | 62.8 |
Msa1404020 | MtrunA17_Chr3g0112131 | 34.513 | 113 | 71 | 1 | 224 | 336 | 109 | 218 | 6.68e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1404020 | AT4G12080.1 | 53.988 | 163 | 71 | 2 | 206 | 364 | 155 | 317 | 3.08e-47 | 164 |
Msa1404020 | AT4G12080.1 | 40.870 | 230 | 64 | 6 | 51 | 209 | 89 | 317 | 3.39e-37 | 137 |
Msa1404020 | AT4G22770.2 | 47.030 | 202 | 104 | 2 | 163 | 363 | 94 | 293 | 2.74e-39 | 142 |
Msa1404020 | AT4G22770.2 | 37.668 | 223 | 70 | 6 | 49 | 202 | 70 | 292 | 5.34e-23 | 98.6 |
Msa1404020 | AT4G22770.1 | 47.030 | 202 | 104 | 2 | 163 | 363 | 94 | 293 | 2.74e-39 | 142 |
Msa1404020 | AT4G22770.1 | 37.668 | 223 | 70 | 6 | 49 | 202 | 70 | 292 | 5.34e-23 | 98.6 |
Msa1404020 | AT4G25320.1 | 51.748 | 143 | 67 | 1 | 204 | 344 | 147 | 289 | 1.37e-37 | 140 |
Msa1404020 | AT4G25320.1 | 34.783 | 207 | 65 | 4 | 51 | 187 | 86 | 292 | 8.82e-27 | 110 |
Msa1404020 | AT5G62260.1 | 50.365 | 137 | 68 | 0 | 213 | 349 | 152 | 288 | 3.64e-37 | 139 |
Msa1404020 | AT5G62260.1 | 38.605 | 215 | 59 | 5 | 49 | 190 | 74 | 288 | 7.34e-31 | 121 |
Msa1404020 | AT5G62260.3 | 50.365 | 137 | 68 | 0 | 213 | 349 | 152 | 288 | 3.64e-37 | 139 |
Msa1404020 | AT5G62260.3 | 38.605 | 215 | 59 | 5 | 49 | 190 | 74 | 288 | 7.34e-31 | 121 |
Msa1404020 | AT4G00200.2 | 54.545 | 143 | 64 | 1 | 219 | 361 | 121 | 262 | 1.06e-36 | 135 |
Msa1404020 | AT4G00200.2 | 58.716 | 109 | 39 | 2 | 91 | 193 | 147 | 255 | 4.11e-22 | 95.9 |
Msa1404020 | AT4G00200.1 | 54.545 | 143 | 64 | 1 | 219 | 361 | 121 | 262 | 1.06e-36 | 135 |
Msa1404020 | AT4G00200.1 | 58.716 | 109 | 39 | 2 | 91 | 193 | 147 | 255 | 4.11e-22 | 95.9 |
Msa1404020 | AT5G51590.1 | 55.645 | 124 | 55 | 0 | 214 | 337 | 171 | 294 | 2.97e-36 | 136 |
Msa1404020 | AT5G51590.1 | 57.447 | 94 | 35 | 1 | 91 | 179 | 202 | 295 | 4.77e-24 | 102 |
Msa1404020 | AT2G33620.1 | 54.400 | 125 | 57 | 0 | 221 | 345 | 163 | 287 | 4.10e-36 | 134 |
Msa1404020 | AT2G33620.1 | 38.860 | 193 | 63 | 4 | 49 | 186 | 95 | 287 | 2.31e-28 | 114 |
Msa1404020 | AT2G33620.4 | 54.400 | 125 | 57 | 0 | 221 | 345 | 163 | 287 | 4.10e-36 | 134 |
Msa1404020 | AT2G33620.4 | 38.860 | 193 | 63 | 4 | 49 | 186 | 95 | 287 | 2.31e-28 | 114 |
Msa1404020 | AT2G33620.2 | 54.400 | 125 | 57 | 0 | 221 | 345 | 163 | 287 | 4.10e-36 | 134 |
Msa1404020 | AT2G33620.2 | 38.860 | 193 | 63 | 4 | 49 | 186 | 95 | 287 | 2.31e-28 | 114 |
Msa1404020 | AT2G33620.3 | 54.400 | 125 | 57 | 0 | 221 | 345 | 163 | 287 | 4.10e-36 | 134 |
Msa1404020 | AT2G33620.3 | 38.860 | 193 | 63 | 4 | 49 | 186 | 95 | 287 | 2.31e-28 | 114 |
Msa1404020 | AT5G62260.2 | 48.800 | 125 | 64 | 0 | 213 | 337 | 152 | 276 | 7.34e-33 | 124 |
Msa1404020 | AT5G62260.2 | 37.037 | 216 | 59 | 6 | 49 | 191 | 74 | 285 | 2.94e-27 | 109 |
Msa1404020 | AT2G45850.1 | 44.697 | 132 | 73 | 0 | 206 | 337 | 147 | 278 | 1.03e-31 | 122 |
Msa1404020 | AT2G45850.1 | 35.545 | 211 | 82 | 5 | 49 | 206 | 96 | 305 | 8.00e-26 | 106 |
Msa1404020 | AT2G45850.2 | 44.697 | 132 | 73 | 0 | 206 | 337 | 147 | 278 | 1.03e-31 | 122 |
Msa1404020 | AT2G45850.2 | 35.545 | 211 | 82 | 5 | 49 | 206 | 96 | 305 | 8.00e-26 | 106 |
Msa1404020 | AT2G45850.3 | 42.748 | 131 | 75 | 0 | 206 | 336 | 147 | 277 | 1.18e-28 | 113 |
Msa1404020 | AT2G45850.3 | 35.714 | 182 | 64 | 4 | 49 | 177 | 96 | 277 | 1.72e-22 | 96.3 |
Msa1404020 | AT4G17950.1 | 44.000 | 150 | 79 | 3 | 221 | 365 | 221 | 370 | 2.00e-28 | 115 |
Msa1404020 | AT4G17950.1 | 42.857 | 154 | 72 | 5 | 49 | 186 | 194 | 347 | 3.15e-23 | 100 |
Msa1404020 | AT1G63470.1 | 40.909 | 132 | 77 | 1 | 206 | 337 | 162 | 292 | 6.38e-26 | 107 |
Msa1404020 | AT1G63470.1 | 33.862 | 189 | 63 | 4 | 51 | 178 | 105 | 292 | 2.08e-20 | 92.0 |
Msa1404020 | AT1G63480.5 | 38.356 | 146 | 85 | 2 | 206 | 351 | 139 | 279 | 6.86e-25 | 104 |
Msa1404020 | AT1G63480.5 | 34.375 | 224 | 83 | 8 | 51 | 211 | 93 | 315 | 5.20e-18 | 84.7 |
Msa1404020 | AT1G63480.7 | 38.356 | 146 | 85 | 2 | 206 | 351 | 139 | 279 | 6.86e-25 | 104 |
Msa1404020 | AT1G63480.7 | 34.375 | 224 | 83 | 8 | 51 | 211 | 93 | 315 | 5.20e-18 | 84.7 |
Msa1404020 | AT1G63480.4 | 38.356 | 146 | 85 | 2 | 206 | 351 | 139 | 279 | 6.86e-25 | 104 |
Msa1404020 | AT1G63480.4 | 34.375 | 224 | 83 | 8 | 51 | 211 | 93 | 315 | 5.20e-18 | 84.7 |
Msa1404020 | AT1G63480.3 | 38.356 | 146 | 85 | 2 | 206 | 351 | 139 | 279 | 6.86e-25 | 104 |
Msa1404020 | AT1G63480.3 | 34.375 | 224 | 83 | 8 | 51 | 211 | 93 | 315 | 5.20e-18 | 84.7 |
Msa1404020 | AT1G63480.6 | 38.356 | 146 | 85 | 2 | 206 | 351 | 139 | 279 | 6.86e-25 | 104 |
Msa1404020 | AT1G63480.6 | 34.375 | 224 | 83 | 8 | 51 | 211 | 93 | 315 | 5.20e-18 | 84.7 |
Msa1404020 | AT1G63480.2 | 38.356 | 146 | 85 | 2 | 206 | 351 | 145 | 285 | 7.75e-25 | 104 |
Msa1404020 | AT1G63480.2 | 34.375 | 224 | 83 | 8 | 51 | 211 | 99 | 321 | 5.28e-18 | 84.7 |
Msa1404020 | AT1G63480.1 | 38.356 | 146 | 85 | 2 | 206 | 351 | 145 | 285 | 7.75e-25 | 104 |
Msa1404020 | AT1G63480.1 | 34.375 | 224 | 83 | 8 | 51 | 211 | 99 | 321 | 5.28e-18 | 84.7 |
Msa1404020 | AT3G61310.1 | 40.909 | 132 | 78 | 0 | 206 | 337 | 149 | 280 | 9.20e-25 | 103 |
Msa1404020 | AT3G61310.1 | 37.500 | 208 | 71 | 7 | 51 | 204 | 101 | 303 | 1.40e-20 | 92.0 |
Msa1404020 | AT3G04590.1 | 44.828 | 116 | 61 | 1 | 221 | 336 | 171 | 283 | 5.54e-24 | 100 |
Msa1404020 | AT3G04590.1 | 43.000 | 100 | 55 | 1 | 87 | 184 | 191 | 290 | 2.31e-18 | 85.1 |
Msa1404020 | AT3G04590.2 | 44.828 | 116 | 61 | 1 | 221 | 336 | 171 | 283 | 1.89e-23 | 100 |
Msa1404020 | AT3G04590.2 | 40.769 | 130 | 73 | 3 | 87 | 214 | 191 | 318 | 7.16e-19 | 87.8 |
Msa1404020 | AT5G46640.1 | 42.236 | 161 | 86 | 2 | 205 | 358 | 162 | 322 | 9.70e-23 | 98.6 |
Msa1404020 | AT5G46640.1 | 43.448 | 145 | 68 | 5 | 49 | 179 | 153 | 297 | 6.69e-14 | 72.8 |
Msa1404020 | AT2G36560.1 | 44.167 | 120 | 65 | 2 | 221 | 338 | 105 | 224 | 3.70e-21 | 95.5 |
Msa1404020 | AT5G49700.1 | 32.353 | 136 | 80 | 4 | 221 | 345 | 83 | 217 | 4.35e-14 | 72.4 |
Msa1404020 | AT5G49700.1 | 36.937 | 111 | 59 | 3 | 95 | 196 | 111 | 219 | 2.17e-13 | 70.1 |
Msa1404020 | AT3G60870.1 | 41.379 | 87 | 47 | 2 | 93 | 177 | 112 | 196 | 4.56e-13 | 68.9 |
Msa1404020 | AT3G60870.1 | 28.221 | 163 | 105 | 4 | 174 | 336 | 46 | 196 | 6.87e-12 | 65.5 |
Msa1404020 | AT1G14490.1 | 29.814 | 161 | 100 | 4 | 216 | 365 | 25 | 183 | 6.77e-12 | 64.7 |
Msa1404020 | AT1G14490.1 | 33.333 | 171 | 72 | 7 | 52 | 193 | 6 | 163 | 3.93e-11 | 62.4 |
Msa1404020 | AT1G14490.2 | 29.814 | 161 | 100 | 4 | 216 | 365 | 44 | 202 | 1.07e-11 | 64.3 |
Msa1404020 | AT1G14490.2 | 33.333 | 171 | 72 | 7 | 52 | 193 | 25 | 182 | 4.07e-11 | 62.8 |
Find 95 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCGTCTGGTCCATACTTTC+TGG | 0.172462 | tig0022985:+65727 | None:intergenic |
AAGATAGGCTGTTATGTATT+TGG | 0.193670 | tig0022985:+62886 | None:intergenic |
TTCCAGGTACTTACATTTAC+AGG | 0.203699 | tig0022985:+64612 | None:intergenic |
TGGATTCTCCAACTCGAATT+TGG | 0.209769 | tig0022985:+65649 | None:intergenic |
TATGAAATTCGAACTTTATC+TGG | 0.233802 | tig0022985:-63391 | Msa1404020:CDS |
TATGAAATTATATCTTTATC+TGG | 0.243485 | tig0022985:-64744 | Msa1404020:CDS |
GACCAGGTACTTACATTTAC+AGG | 0.268526 | tig0022985:+63244 | None:intergenic |
ATTCCAGTTCTTGGTGCTGC+AGG | 0.307459 | tig0022985:+65848 | None:intergenic |
CGCGGAAGGCGGAGTATATC+TGG | 0.344559 | tig0022985:-63346 | Msa1404020:CDS |
AGGGGTCGCCCCAGAAAGTA+TGG | 0.356183 | tig0022985:-65737 | Msa1404020:CDS |
CCGTCTGGTCCATACTTTCT+GGG | 0.367431 | tig0022985:+65728 | None:intergenic |
GATAGAATGCATATGGCTTC+TGG | 0.380389 | tig0022985:+63640 | None:intergenic |
TGGCATGAGTGTTTCTTTAG+TGG | 0.383981 | tig0022985:-63323 | Msa1404020:CDS |
AAAGCTGGGATTCCAGTTCT+TGG | 0.386982 | tig0022985:+65839 | None:intergenic |
TTCTGCTCATGTTGTTCACT+TGG | 0.400794 | tig0022985:+62970 | None:intergenic |
GTTTCTTTAGCGGGTCTAGA+TGG | 0.404137 | tig0022985:-64681 | Msa1404020:CDS |
ATCGTTGGAGGTTGCGTAGC+TGG | 0.408342 | tig0022985:-64654 | Msa1404020:CDS |
ACCAGACGGGTCTTTAATCT+TGG | 0.410529 | tig0022985:-65714 | Msa1404020:CDS |
GATAGAATGCATATAGCTTC+TGG | 0.411982 | tig0022985:+64978 | None:intergenic |
CCACCACTGCGACTTTCGTT+TGG | 0.412733 | tig0022985:+64711 | None:intergenic |
AACCCTGCAGCACCAAGAAC+TGG | 0.424961 | tig0022985:-65851 | Msa1404020:CDS |
GCAGTAGACATGGGAGCAGC+TGG | 0.426144 | tig0022985:+62913 | None:intergenic |
GTGGGTCCATCGGCAAAAGC+TGG | 0.432662 | tig0022985:+65824 | None:intergenic |
CACAGCTGATTCGACATCTC+AGG | 0.441577 | tig0022985:-65804 | Msa1404020:CDS |
TGGCGCCAGCAAAGAGGAAA+AGG | 0.445228 | tig0022985:-65757 | Msa1404020:CDS |
GGTATGAGTGTTTCTTTAGC+GGG | 0.447972 | tig0022985:-64690 | Msa1404020:CDS |
GTTGTTGGCGGTCGTGTAGC+TGG | 0.449009 | tig0022985:-63286 | Msa1404020:CDS |
TAACTGAGCTTGCAAGCAAT+TGG | 0.450726 | tig0022985:+63958 | None:intergenic |
GGCGCCACCATTTGCAGCGG+TGG | 0.453790 | tig0022985:+65773 | None:intergenic |
AGGCATTCCACCGCTGCAAA+TGG | 0.457742 | tig0022985:-65780 | Msa1404020:CDS |
ATCTGGTTTGTTCATGCCAA+AGG | 0.459811 | tig0022985:-63374 | Msa1404020:CDS |
ATTCACAGATAGAATGCATA+TGG | 0.464355 | tig0022985:+63633 | None:intergenic |
GCTGCTCCCATGTCTACTGC+TGG | 0.473409 | tig0022985:-62910 | Msa1404020:CDS |
GGCGCCAGCAAAGAGGAAAA+GGG | 0.481838 | tig0022985:-65756 | Msa1404020:CDS |
ATATGCATTCTATCTGCAAA+TGG | 0.495626 | tig0022985:-64969 | Msa1404020:CDS |
ATGGAGGGTGCTAGCAATAG+TGG | 0.502183 | tig0022985:-65896 | Msa1404020:CDS |
GGTGCTGCAGGGTTATCTGT+TGG | 0.503393 | tig0022985:+65860 | None:intergenic |
TTCCAGTTCTTGGTGCTGCA+GGG | 0.504119 | tig0022985:+65849 | None:intergenic |
ATGGAGCTAGATGTTGGCTT+GGG | 0.508152 | tig0022985:+65683 | None:intergenic |
TCGAACATTATTCACGTATG+AGG | 0.511504 | tig0022985:-63569 | Msa1404020:intron |
GATGCTCCCGTGTCTACTGC+TGG | 0.518304 | tig0022985:-64253 | Msa1404020:intron |
AGACGATTGAGGCTGACTAA+TGG | 0.522248 | tig0022985:+64929 | None:intergenic |
TTGCCGATGGAGCTAGATGT+TGG | 0.522643 | tig0022985:+65677 | None:intergenic |
AATAATGTTCGAGACGATTG+AGG | 0.525993 | tig0022985:+63580 | None:intergenic |
CTGAGATGTCGAATCAGCTG+TGG | 0.534004 | tig0022985:+65805 | None:intergenic |
GTTTCTTTAGTGGATCTACA+TGG | 0.535434 | tig0022985:-63313 | Msa1404020:CDS |
ATATGCATTCTATCTGTGAA+TGG | 0.536186 | tig0022985:-63631 | Msa1404020:CDS |
GCATTCACAATGAAAATATG+AGG | 0.537005 | tig0022985:+63921 | None:intergenic |
TGGTATGAGTGTTTCTTTAG+CGG | 0.540533 | tig0022985:-64691 | Msa1404020:CDS |
ACAGGACTTGCAGCCACCAA+TGG | 0.541015 | tig0022985:+63262 | None:intergenic |
CGAATCAGCTGTGGGTCCAT+CGG | 0.541484 | tig0022985:+65814 | None:intergenic |
CATTCCACCGCTGCAAATGG+TGG | 0.541527 | tig0022985:-65777 | Msa1404020:CDS |
GATGGAGCTAGATGTTGGCT+TGG | 0.542943 | tig0022985:+65682 | None:intergenic |
CGGTCGTGTAGCTGGTCCAT+TGG | 0.545745 | tig0022985:-63278 | Msa1404020:CDS |
GAAATGCTTCACCTCATATG+TGG | 0.547537 | tig0022985:+64896 | None:intergenic |
ACAGGACTTGCAGCTACCAA+TGG | 0.547952 | tig0022985:+64630 | None:intergenic |
GAATTTGGCAGCTTTGCCGA+TGG | 0.548498 | tig0022985:+65664 | None:intergenic |
TCGTGTAGCTGGTCCATTGG+TGG | 0.554685 | tig0022985:-63275 | Msa1404020:CDS |
GGTCTAGATGGACATATCGT+TGG | 0.556357 | tig0022985:-64669 | Msa1404020:CDS |
TGCCAAAGGAAAAGCGCGGA+AGG | 0.557420 | tig0022985:-63360 | Msa1404020:CDS |
TGGGTCCATCGGCAAAAGCT+GGG | 0.559063 | tig0022985:+65825 | None:intergenic |
GCCAAGATTAAAGACCCGTC+TGG | 0.560561 | tig0022985:+65713 | None:intergenic |
CAAAGCTGCCAAATTCGAGT+TGG | 0.564111 | tig0022985:-65657 | Msa1404020:CDS |
GATCTACATGGACATGTTGT+TGG | 0.565136 | tig0022985:-63301 | Msa1404020:CDS |
CTAGATGGACATATCGTTGG+AGG | 0.567496 | tig0022985:-64666 | Msa1404020:CDS |
GACACGGGAGCATCTGCCGT+TGG | 0.568071 | tig0022985:+64262 | None:intergenic |
TTTCATTGTGAATGCTGGAG+AGG | 0.570869 | tig0022985:-63913 | Msa1404020:intron |
AAGCCAACATCTAGCTCCAT+CGG | 0.574453 | tig0022985:-65680 | Msa1404020:CDS |
CCCAGAAAGTATGGACCAGA+CGG | 0.575081 | tig0022985:-65728 | Msa1404020:CDS |
AGGTTGCGTAGCTGGTCCAT+TGG | 0.577220 | tig0022985:-64646 | Msa1404020:CDS |
ATTTGGACCAGCAGTAGACA+TGG | 0.578513 | tig0022985:+62903 | None:intergenic |
GCTGGCGCCACCATTTGCAG+CGG | 0.582574 | tig0022985:+65770 | None:intergenic |
TATCAAAAGCAGTCATTAGT+CGG | 0.588120 | tig0022985:-63603 | Msa1404020:CDS |
GAGCTAGATGTTGGCTTGGG+AGG | 0.595395 | tig0022985:+65686 | None:intergenic |
AAATTCGAGTTGGAGAATCC+AGG | 0.596763 | tig0022985:-65647 | Msa1404020:intron |
CTACATGGACATGTTGTTGG+CGG | 0.596833 | tig0022985:-63298 | Msa1404020:CDS |
GACTTCAACGTCAATGCCAA+CGG | 0.603268 | tig0022985:-64278 | Msa1404020:CDS |
GATATGTATCAGGTAGTGGT+AGG | 0.603294 | tig0022985:-63003 | Msa1404020:intron |
TATTGTACCAGCAGTAGACA+CGG | 0.609633 | tig0022985:+64246 | None:intergenic |
CGTCTGGTCCATACTTTCTG+GGG | 0.621397 | tig0022985:+65729 | None:intergenic |
CCAAACGAAAGTCGCAGTGG+TGG | 0.623451 | tig0022985:-64711 | Msa1404020:CDS |
ACAGCTGATTCGACATCTCA+GGG | 0.628768 | tig0022985:-65803 | Msa1404020:CDS |
GCGCCAGCAAAGAGGAAAAG+GGG | 0.629697 | tig0022985:-65755 | Msa1404020:CDS |
TGAGATGTCGAATCAGCTGT+GGG | 0.630120 | tig0022985:+65806 | None:intergenic |
AAATGGTGGCGCCAGCAAAG+AGG | 0.640999 | tig0022985:-65763 | Msa1404020:CDS |
CAAAGGAAAAGCGCGGAAGG+CGG | 0.642169 | tig0022985:-63357 | Msa1404020:CDS |
CGATTGAGGCTGACTAATGG+TGG | 0.644722 | tig0022985:+64932 | None:intergenic |
CCAGAAAGTATGGACCAGAC+GGG | 0.646931 | tig0022985:-65727 | Msa1404020:CDS |
ACTCTAGTGAAGTTCATGGA+GGG | 0.668635 | tig0022985:-65911 | None:intergenic |
TTTGGACCAGCAGTAGACAT+GGG | 0.688042 | tig0022985:+62904 | None:intergenic |
ATTGTACCAGCAGTAGACAC+GGG | 0.698737 | tig0022985:+64247 | None:intergenic |
GTGCCAAACGAAAGTCGCAG+TGG | 0.704907 | tig0022985:-64714 | Msa1404020:CDS |
GGAAGGCGGAGTATATCTGG+TGG | 0.708998 | tig0022985:-63343 | Msa1404020:CDS |
TTCATGCCAAAGGAAAAGCG+CGG | 0.727437 | tig0022985:-63364 | Msa1404020:CDS |
GCTGATTCGACATCTCAGGG+AGG | 0.790272 | tig0022985:-65800 | Msa1404020:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAATATATATCAAGTTAT+TGG | - | tig0022985:64698-64717 | Msa1404020:CDS | 10.0% |
!! | TATCTAATTATGAATATTAT+GGG | + | tig0022985:64950-64969 | None:intergenic | 10.0% |
!! | TTATCTAATTATGAATATTA+TGG | + | tig0022985:64951-64970 | None:intergenic | 10.0% |
!! | TTAATATATATCAAGTGTAT+TGG | - | tig0022985:63284-63303 | Msa1404020:CDS | 15.0% |
!! | TATGAAATTATATCTTTATC+TGG | - | tig0022985:64049-64068 | Msa1404020:intron | 15.0% |
!!! | TATATCTTGATATTTTTAAC+TGG | - | tig0022985:64978-64997 | Msa1404020:CDS | 15.0% |
!! | TAAGATGTAATTGTAAATGT+TGG | - | tig0022985:63325-63344 | Msa1404020:CDS | 20.0% |
!! | ATATCTTCGATATTCATAAT+TGG | - | tig0022985:63643-63662 | Msa1404020:CDS | 20.0% |
!! | TAATGACTGATTAGAATAAA+TGG | - | tig0022985:63726-63745 | Msa1404020:intron | 20.0% |
!! | TAATCTGATAGTAGTATTAT+TGG | - | tig0022985:63922-63941 | Msa1404020:CDS | 20.0% |
!!! | TATTGGTATCAGTTTTAATA+TGG | - | tig0022985:63939-63958 | Msa1404020:CDS | 20.0% |
!! | AATAATGTCAATTGAATTTC+AGG | - | tig0022985:64021-64040 | Msa1404020:intron | 20.0% |
!! | ATAATGTCAATTGAATTTCA+GGG | - | tig0022985:64022-64041 | Msa1404020:intron | 20.0% |
!! | AATATATATCAAGTTATTGG+TGG | - | tig0022985:64701-64720 | Msa1404020:CDS | 20.0% |
!! | TAAGATATAAGTGTAAATGT+TGG | - | tig0022985:64738-64757 | Msa1404020:CDS | 20.0% |
!! | AATAATGCAAATTGAATTTC+AGG | - | tig0022985:65374-65393 | Msa1404020:intron | 20.0% |
!! | ATAATGCAAATTGAATTTCA+GGG | - | tig0022985:65375-65394 | Msa1404020:intron | 20.0% |
! | ATATATATCAAGTGTATTGG+TGG | - | tig0022985:63287-63306 | Msa1404020:CDS | 25.0% |
! | TGTTCATAATTTCCTGATTT+CGG | - | tig0022985:63396-63415 | Msa1404020:CDS | 25.0% |
! | TCAAAAATTATCCACATATG+AGG | - | tig0022985:63886-63905 | Msa1404020:intron | 25.0% |
!!! | TCAGTTTTAATATGGAGTTT+AGG | - | tig0022985:63947-63966 | Msa1404020:CDS | 25.0% |
! | TTAAAGAAACACATCAAAAC+AGG | + | tig0022985:64002-64021 | None:intergenic | 25.0% |
!!! | GAATAGTGTATTTTGTTGTT+TGG | - | tig0022985:64657-64676 | Msa1404020:CDS | 25.0% |
! | TGATGACTAATCAGAATAAA+TGG | - | tig0022985:65064-65083 | Msa1404020:intron | 25.0% |
! | TATGAAATTCGAACTTTATC+TGG | - | tig0022985:65402-65421 | Msa1404020:intron | 25.0% |
! | GCTTATGTAGTTATTTATCT+TGG | - | tig0022985:65618-65637 | Msa1404020:intron | 25.0% |
! | ATGCAATTCTGATAATTTAG+TGG | - | tig0022985:65712-65731 | Msa1404020:CDS | 25.0% |
AGATATTTAATGCCGAAATC+AGG | + | tig0022985:63411-63430 | None:intergenic | 30.0% | |
TTCGGCATTAAATATCTTTG+TGG | - | tig0022985:63414-63433 | Msa1404020:intron | 30.0% | |
! | GTTCTTTCTTTCTTTTTGTC+TGG | - | tig0022985:63463-63482 | Msa1404020:intron | 30.0% |
CAACTGAATTTGCAAGAAAT+TGG | + | tig0022985:63489-63508 | None:intergenic | 30.0% | |
CAATTTCTTGCAAATTCAGT+TGG | - | tig0022985:63487-63506 | Msa1404020:intron | 30.0% | |
AGTAAATTTAGATCCTCATG+AGG | - | tig0022985:63516-63535 | Msa1404020:intron | 30.0% | |
GTAAATTTAGATCCTCATGA+GGG | - | tig0022985:63517-63536 | Msa1404020:intron | 30.0% | |
GTTGAGTTTGATCTTCAATA+GGG | + | tig0022985:63543-63562 | None:intergenic | 30.0% | |
TGTTGAGTTTGATCTTCAAT+AGG | + | tig0022985:63544-63563 | None:intergenic | 30.0% | |
! | AGAATTAACTGTGATAATGC+GGG | + | tig0022985:63614-63633 | None:intergenic | 30.0% |
! | CAGAATTAACTGTGATAATG+CGG | + | tig0022985:63615-63634 | None:intergenic | 30.0% |
ATATGCATTCTATCTGCAAA+TGG | - | tig0022985:63824-63843 | Msa1404020:intron | 30.0% | |
!!! | GATAATTTTTGAGACGATTG+AGG | + | tig0022985:63878-63897 | None:intergenic | 30.0% |
TAAATGTAAGTACCTGGAAA+GGG | - | tig0022985:64185-64204 | Msa1404020:intron | 30.0% | |
ATACTAAAACACCAATTAGC+AGG | - | tig0022985:64234-64253 | Msa1404020:intron | 30.0% | |
ATTCTCATTACTCTTTCCAA+TGG | - | tig0022985:64409-64428 | Msa1404020:intron | 30.0% | |
!!! | AAGTGCTTTCTTTTTTTCTC+AGG | - | tig0022985:64812-64831 | Msa1404020:intron | 30.0% |
GCATTCACAATGAAAATATG+AGG | + | tig0022985:64875-64894 | None:intergenic | 30.0% | |
! | CATATTTTCATTGTGAATGC+TGG | - | tig0022985:64875-64894 | Msa1404020:intron | 30.0% |
!!! | GGAGAGGTAATATCATTTTT+TGG | - | tig0022985:64896-64915 | Msa1404020:intron | 30.0% |
!!! | ATAATGTCATTTTGTCAGCA+AGG | - | tig0022985:65129-65148 | Msa1404020:intron | 30.0% |
ATTCACAGATAGAATGCATA+TGG | + | tig0022985:65163-65182 | None:intergenic | 30.0% | |
ATATGCATTCTATCTGTGAA+TGG | - | tig0022985:65162-65181 | Msa1404020:intron | 30.0% | |
TATCAAAAGCAGTCATTAGT+CGG | - | tig0022985:65190-65209 | Msa1404020:intron | 30.0% | |
CCACATTAGTACATTGAATT+AGG | + | tig0022985:65297-65316 | None:intergenic | 30.0% | |
CCTAATTCAATGTACTAATG+TGG | - | tig0022985:65294-65313 | Msa1404020:intron | 30.0% | |
AATGTACTAATGTGGAGTTT+AGG | - | tig0022985:65302-65321 | Msa1404020:intron | 30.0% | |
TGAATAACAAACTACTCCTA+AGG | + | tig0022985:65329-65348 | None:intergenic | 30.0% | |
GCTAAAAACACAGAATAATG+AGG | - | tig0022985:65846-65865 | Msa1404020:CDS | 30.0% | |
AAGAGAATTTCTTAGCTACC+TGG | + | tig0022985:63167-63186 | None:intergenic | 35.0% | |
!! | GAATAGTGCACTTTGTTGTT+CGG | - | tig0022985:63242-63261 | Msa1404020:intron | 35.0% |
CGCATTATCACAGTTAATTC+TGG | - | tig0022985:63613-63632 | Msa1404020:CDS | 35.0% | |
! | TATCACAGTTAATTCTGGAG+AGG | - | tig0022985:63618-63637 | Msa1404020:CDS | 35.0% |
! | AATGGCTACTACTTGTCTTT+TGG | - | tig0022985:63744-63763 | Msa1404020:intron | 35.0% |
!!! | GTAATGTCATTTTGTCAGCA+AGG | - | tig0022985:63791-63810 | Msa1404020:intron | 35.0% |
GATAGAATGCATATAGCTTC+TGG | + | tig0022985:63818-63837 | None:intergenic | 35.0% | |
TGGTATGAGTGTTTCTTTAG+CGG | - | tig0022985:64102-64121 | Msa1404020:intron | 35.0% | |
TTCCAGGTACTTACATTTAC+AGG | + | tig0022985:64184-64203 | None:intergenic | 35.0% | |
GTAAATGTAAGTACCTGGAA+AGG | - | tig0022985:64184-64203 | Msa1404020:intron | 35.0% | |
TACCTGGAAAGGGAATAATA+GGG | - | tig0022985:64195-64214 | Msa1404020:intron | 35.0% | |
GATTTAAGCATCCTGCTAAT+TGG | + | tig0022985:64248-64267 | None:intergenic | 35.0% | |
ATAGTAGCAATTTCGTTAGC+AGG | + | tig0022985:64330-64349 | None:intergenic | 35.0% | |
GTAGTAAAACGCAAACTTTG+TGG | - | tig0022985:64357-64376 | Msa1404020:intron | 35.0% | |
CCTGATACATATCAATCCAT+TGG | + | tig0022985:64428-64447 | None:intergenic | 35.0% | |
!! | CCAATGGATTGATATGTATC+AGG | - | tig0022985:64425-64444 | Msa1404020:intron | 35.0% |
GATTGATATGTATCAGGTAG+TGG | - | tig0022985:64431-64450 | Msa1404020:intron | 35.0% | |
GTATTTGTTTCCGTTATCAC+TGG | - | tig0022985:65039-65058 | Msa1404020:intron | 35.0% | |
AGTCATCATTCCAGTGATAA+CGG | + | tig0022985:65052-65071 | None:intergenic | 35.0% | |
!! | ACTTGTCTTTTGATTGTCTC+AGG | - | tig0022985:65092-65111 | Msa1404020:intron | 35.0% |
AATAATGTTCGAGACGATTG+AGG | + | tig0022985:65216-65235 | None:intergenic | 35.0% | |
TCGAACATTATTCACGTATG+AGG | - | tig0022985:65224-65243 | Msa1404020:intron | 35.0% | |
! | GTTTCTTTAGTGGATCTACA+TGG | - | tig0022985:65480-65499 | Msa1404020:intron | 35.0% |
TCTGTTTCCTGCTAAAGAAA+TGG | - | tig0022985:65671-65690 | Msa1404020:CDS | 35.0% | |
! | ATAGTTGCCATTTCTTTAGC+AGG | + | tig0022985:65681-65700 | None:intergenic | 35.0% |
ATTCTCATCACTGTTTCCAA+TGG | - | tig0022985:65764-65783 | Msa1404020:CDS | 35.0% | |
CCTGATACATATCAATCCAT+TGG | + | tig0022985:64428-64447 | None:intergenic | 35.0% | |
!! | CCAATGGATTGATATGTATC+AGG | - | tig0022985:64425-64444 | Msa1404020:intron | 35.0% |
GATTGATATGTATCAGGTAG+TGG | - | tig0022985:64431-64450 | Msa1404020:intron | 35.0% | |
TGGATTCTCCAACTCGAATT+TGG | + | tig0022985:63147-63166 | None:intergenic | 40.0% | |
!! | AAATTCGAGTTGGAGAATCC+AGG | - | tig0022985:63146-63165 | Msa1404020:intron | 40.0% |
!! | CCTTATGCTCTAGTTCTTGA+GGG | + | tig0022985:63567-63586 | None:intergenic | 40.0% |
!! | ACCTTATGCTCTAGTTCTTG+AGG | + | tig0022985:63568-63587 | None:intergenic | 40.0% |
GATGTAAAAGTAGTGCCTTC+TGG | + | tig0022985:63592-63611 | None:intergenic | 40.0% | |
GAAATGCTTCACCTCATATG+TGG | + | tig0022985:63900-63919 | None:intergenic | 40.0% | |
GGTATGAGTGTTTCTTTAGC+GGG | - | tig0022985:64103-64122 | Msa1404020:intron | 40.0% | |
GTCCTGTAAATGTAAGTACC+TGG | - | tig0022985:64179-64198 | Msa1404020:intron | 40.0% | |
GTACCTGGAAAGGGAATAAT+AGG | - | tig0022985:64194-64213 | Msa1404020:intron | 40.0% | |
! | GTTTGCGTTTTACTACACAC+TGG | + | tig0022985:64353-64372 | None:intergenic | 40.0% |
GCTAAAAACGCAGGAAAATG+AGG | - | tig0022985:64491-64510 | Msa1404020:intron | 40.0% | |
TATTGTACCAGCAGTAGACA+CGG | + | tig0022985:64550-64569 | None:intergenic | 40.0% | |
GGAAGATGAAGATGAGAGTT+AGG | + | tig0022985:64573-64592 | None:intergenic | 40.0% | |
TCATCTTCATCTTCCTTCCA+CGG | - | tig0022985:64578-64597 | Msa1404020:intron | 40.0% | |
AAGAAAGAGAATCATCTCCG+TGG | + | tig0022985:64598-64617 | None:intergenic | 40.0% | |
TTGTGATCATGCGAGTTTCA+TGG | - | tig0022985:64617-64636 | Msa1404020:intron | 40.0% | |
TAACTGAGCTTGCAAGCAAT+TGG | + | tig0022985:64838-64857 | None:intergenic | 40.0% | |
TTTCATTGTGAATGCTGGAG+AGG | - | tig0022985:64880-64899 | Msa1404020:intron | 40.0% | |
GATAGAATGCATATGGCTTC+TGG | + | tig0022985:65156-65175 | None:intergenic | 40.0% | |
! | AATGTGGAGTTTAGGACCTT+AGG | - | tig0022985:65310-65329 | Msa1404020:intron | 40.0% |
!! | ATCTGGTTTGTTCATGCCAA+AGG | - | tig0022985:65419-65438 | Msa1404020:intron | 40.0% |
TGGCATGAGTGTTTCTTTAG+TGG | - | tig0022985:65470-65489 | Msa1404020:intron | 40.0% | |
GATCTACATGGACATGTTGT+TGG | - | tig0022985:65492-65511 | Msa1404020:intron | 40.0% | |
GTCCTGTAAATGTAAGTACC+TGG | - | tig0022985:64179-64198 | Msa1404020:intron | 40.0% | |
GACCAGGTACTTACATTTAC+AGG | + | tig0022985:65552-65571 | None:intergenic | 40.0% | |
TAAATGTAAGTACCTGGTCC+TGG | - | tig0022985:65553-65572 | Msa1404020:intron | 40.0% | |
AAAAGACATATTCCCTAGCC+AGG | + | tig0022985:65574-65593 | None:intergenic | 40.0% | |
TTCGCAAACTAAAGTCTAGC+AGG | - | tig0022985:65593-65612 | Msa1404020:intron | 40.0% | |
TCGCAAACTAAAGTCTAGCA+GGG | - | tig0022985:65594-65613 | Msa1404020:intron | 40.0% | |
! | GATATGTATCAGGTAGTGGT+AGG | - | tig0022985:64435-64454 | Msa1404020:intron | 40.0% |
TTCTGCTCATGTTGTTCACT+TGG | + | tig0022985:65826-65845 | None:intergenic | 40.0% | |
AAAGCTGGGATTCCAGTTCT+TGG | + | tig0022985:62957-62976 | None:intergenic | 45.0% | |
TGAGATGTCGAATCAGCTGT+GGG | + | tig0022985:62990-63009 | None:intergenic | 45.0% | |
!! | ACAGCTGATTCGACATCTCA+GGG | - | tig0022985:62990-63009 | Msa1404020:CDS | 45.0% |
ACCAGACGGGTCTTTAATCT+TGG | - | tig0022985:63079-63098 | Msa1404020:intron | 45.0% | |
!! | ATGGAGCTAGATGTTGGCTT+GGG | + | tig0022985:63113-63132 | None:intergenic | 45.0% |
! | AAGCCAACATCTAGCTCCAT+CGG | - | tig0022985:63113-63132 | Msa1404020:intron | 45.0% |
CAAAGCTGCCAAATTCGAGT+TGG | - | tig0022985:63136-63155 | Msa1404020:intron | 45.0% | |
CCCTCAAGAACTAGAGCATA+AGG | - | tig0022985:63564-63583 | Msa1404020:intron | 45.0% | |
AGACGATTGAGGCTGACTAA+TGG | + | tig0022985:63867-63886 | None:intergenic | 45.0% | |
! | GTTTCTTTAGCGGGTCTAGA+TGG | - | tig0022985:64112-64131 | Msa1404020:intron | 45.0% |
GGTCTAGATGGACATATCGT+TGG | - | tig0022985:64124-64143 | Msa1404020:intron | 45.0% | |
CTAGATGGACATATCGTTGG+AGG | - | tig0022985:64127-64146 | Msa1404020:intron | 45.0% | |
AGCCCTATTATTCCCTTTCC+AGG | + | tig0022985:64200-64219 | None:intergenic | 45.0% | |
!! | GGTAGTGGTAAGCAGTTTTC+TGG | - | tig0022985:64446-64465 | Msa1404020:intron | 45.0% |
TGAGCAGAAGCTAAAAACGC+AGG | - | tig0022985:64482-64501 | Msa1404020:intron | 45.0% | |
GACTTCAACGTCAATGCCAA+CGG | - | tig0022985:64515-64534 | Msa1404020:intron | 45.0% | |
ATTGTACCAGCAGTAGACAC+GGG | + | tig0022985:64549-64568 | None:intergenic | 45.0% | |
AAGAGAATCATCTCCGTGGA+AGG | + | tig0022985:64594-64613 | None:intergenic | 45.0% | |
TCATGCGAGTTTCATGGTTG+TGG | - | tig0022985:64623-64642 | Msa1404020:intron | 45.0% | |
TTCATGCCAAAGGAAAAGCG+CGG | - | tig0022985:65429-65448 | Msa1404020:intron | 45.0% | |
CTACATGGACATGTTGTTGG+CGG | - | tig0022985:65495-65514 | Msa1404020:intron | 45.0% | |
TTTGGACCAGCAGTAGACAT+GGG | + | tig0022985:65892-65911 | None:intergenic | 45.0% | |
ATTTGGACCAGCAGTAGACA+TGG | + | tig0022985:65893-65912 | None:intergenic | 45.0% | |
!! | ATGGAGGGTGCTAGCAATAG+TGG | - | tig0022985:62897-62916 | Msa1404020:CDS | 50.0% |
!! | TTCCAGTTCTTGGTGCTGCA+GGG | + | tig0022985:62947-62966 | None:intergenic | 50.0% |
!! | ATTCCAGTTCTTGGTGCTGC+AGG | + | tig0022985:62948-62967 | None:intergenic | 50.0% |
CTGAGATGTCGAATCAGCTG+TGG | + | tig0022985:62991-63010 | None:intergenic | 50.0% | |
!! | CACAGCTGATTCGACATCTC+AGG | - | tig0022985:62989-63008 | Msa1404020:CDS | 50.0% |
CGTCTGGTCCATACTTTCTG+GGG | + | tig0022985:63067-63086 | None:intergenic | 50.0% | |
CCGTCTGGTCCATACTTTCT+GGG | + | tig0022985:63068-63087 | None:intergenic | 50.0% | |
! | CCCAGAAAGTATGGACCAGA+CGG | - | tig0022985:63065-63084 | Msa1404020:intron | 50.0% |
! | CCAGAAAGTATGGACCAGAC+GGG | - | tig0022985:63066-63085 | Msa1404020:intron | 50.0% |
GCCAAGATTAAAGACCCGTC+TGG | + | tig0022985:63083-63102 | None:intergenic | 50.0% | |
! | GATGGAGCTAGATGTTGGCT+TGG | + | tig0022985:63114-63133 | None:intergenic | 50.0% |
TTGCCGATGGAGCTAGATGT+TGG | + | tig0022985:63119-63138 | None:intergenic | 50.0% | |
GAATTTGGCAGCTTTGCCGA+TGG | + | tig0022985:63132-63151 | None:intergenic | 50.0% | |
TCTTCAATAGGGCCCTCATG+AGG | + | tig0022985:63532-63551 | None:intergenic | 50.0% | |
! | CTAGAGCATAAGGTGCCAGA+AGG | - | tig0022985:63574-63593 | Msa1404020:CDS | 50.0% |
CGATTGAGGCTGACTAATGG+TGG | + | tig0022985:63864-63883 | None:intergenic | 50.0% | |
ACAGGACTTGCAGCTACCAA+TGG | + | tig0022985:64166-64185 | None:intergenic | 50.0% | |
TGCGAGTTTCATGGTTGTGG+AGG | - | tig0022985:64626-64645 | Msa1404020:CDS | 50.0% | |
TAAGTACCTGGTCCTGGCTA+GGG | - | tig0022985:65559-65578 | Msa1404020:intron | 50.0% | |
! | GGTGCTGCAGGGTTATCTGT+TGG | + | tig0022985:62936-62955 | None:intergenic | 55.0% |
AACCCTGCAGCACCAAGAAC+TGG | - | tig0022985:62942-62961 | Msa1404020:CDS | 55.0% | |
! | GGAATCCCAGCTTTTGCCGA+TGG | - | tig0022985:62963-62982 | Msa1404020:CDS | 55.0% |
TGGGTCCATCGGCAAAAGCT+GGG | + | tig0022985:62971-62990 | None:intergenic | 55.0% | |
CGAATCAGCTGTGGGTCCAT+CGG | + | tig0022985:62982-63001 | None:intergenic | 55.0% | |
!! | GCTGATTCGACATCTCAGGG+AGG | - | tig0022985:62993-63012 | Msa1404020:CDS | 55.0% |
AGGCATTCCACCGCTGCAAA+TGG | - | tig0022985:63013-63032 | Msa1404020:intron | 55.0% | |
CATTCCACCGCTGCAAATGG+TGG | - | tig0022985:63016-63035 | Msa1404020:intron | 55.0% | |
! | AAATGGTGGCGCCAGCAAAG+AGG | - | tig0022985:63030-63049 | Msa1404020:intron | 55.0% |
TGGCGCCAGCAAAGAGGAAA+AGG | - | tig0022985:63036-63055 | Msa1404020:intron | 55.0% | |
GGCGCCAGCAAAGAGGAAAA+GGG | - | tig0022985:63037-63056 | Msa1404020:intron | 55.0% | |
GCGCCAGCAAAGAGGAAAAG+GGG | - | tig0022985:63038-63057 | Msa1404020:intron | 55.0% | |
! | CGACCCCTTTTCCTCTTTGC+TGG | + | tig0022985:63044-63063 | None:intergenic | 55.0% |
CCCGTCTGGTCCATACTTTC+TGG | + | tig0022985:63069-63088 | None:intergenic | 55.0% | |
!! | GAGCTAGATGTTGGCTTGGG+AGG | + | tig0022985:63110-63129 | None:intergenic | 55.0% |
GTGCCAAACGAAAGTCGCAG+TGG | - | tig0022985:64079-64098 | Msa1404020:intron | 55.0% | |
CCACCACTGCGACTTTCGTT+TGG | + | tig0022985:64085-64104 | None:intergenic | 55.0% | |
CCAAACGAAAGTCGCAGTGG+TGG | - | tig0022985:64082-64101 | Msa1404020:intron | 55.0% | |
ATCGTTGGAGGTTGCGTAGC+TGG | - | tig0022985:64139-64158 | Msa1404020:intron | 55.0% | |
AGGTTGCGTAGCTGGTCCAT+TGG | - | tig0022985:64147-64166 | Msa1404020:intron | 55.0% | |
! | TGCCAAAGGAAAAGCGCGGA+AGG | - | tig0022985:65433-65452 | Msa1404020:intron | 55.0% |
! | CAAAGGAAAAGCGCGGAAGG+CGG | - | tig0022985:65436-65455 | Msa1404020:intron | 55.0% |
GGAAGGCGGAGTATATCTGG+TGG | - | tig0022985:65450-65469 | Msa1404020:intron | 55.0% | |
TCGTGTAGCTGGTCCATTGG+TGG | - | tig0022985:65518-65537 | Msa1404020:intron | 55.0% | |
ACAGGACTTGCAGCCACCAA+TGG | + | tig0022985:65534-65553 | None:intergenic | 55.0% | |
GTAAGTACCTGGTCCTGGCT+AGG | - | tig0022985:65558-65577 | Msa1404020:intron | 55.0% | |
CATATTCCCTAGCCAGGACC+AGG | + | tig0022985:65568-65587 | None:intergenic | 55.0% | |
GTGGGTCCATCGGCAAAAGC+TGG | + | tig0022985:62972-62991 | None:intergenic | 60.0% | |
AGGGGTCGCCCCAGAAAGTA+TGG | - | tig0022985:63056-63075 | Msa1404020:intron | 60.0% | |
GATGCTCCCGTGTCTACTGC+TGG | - | tig0022985:64540-64559 | Msa1404020:intron | 60.0% | |
! | CGCCTTCCGCGCTTTTCCTT+TGG | + | tig0022985:65438-65457 | None:intergenic | 60.0% |
CGCGGAAGGCGGAGTATATC+TGG | - | tig0022985:65447-65466 | Msa1404020:intron | 60.0% | |
GTTGTTGGCGGTCGTGTAGC+TGG | - | tig0022985:65507-65526 | Msa1404020:intron | 60.0% | |
CGGTCGTGTAGCTGGTCCAT+TGG | - | tig0022985:65515-65534 | Msa1404020:intron | 60.0% | |
GCAGTAGACATGGGAGCAGC+TGG | + | tig0022985:65883-65902 | None:intergenic | 60.0% | |
GCTGCTCCCATGTCTACTGC+TGG | - | tig0022985:65883-65902 | Msa1404020:CDS | 60.0% | |
GCTGGCGCCACCATTTGCAG+CGG | + | tig0022985:63026-63045 | None:intergenic | 65.0% | |
!! | GACACGGGAGCATCTGCCGT+TGG | + | tig0022985:64534-64553 | None:intergenic | 65.0% |
GGCGCCACCATTTGCAGCGG+TGG | + | tig0022985:63023-63042 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0022985 | gene | 62897 | 65918 | 62897 | ID=Msa1404020;Name=Msa1404020 |
tig0022985 | mRNA | 62897 | 65918 | 62897 | ID=Msa1404020-mRNA-1;Parent=Msa1404020;Name=Msa1404020-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|8|0|368 |
tig0022985 | exon | 65648 | 65918 | 65648 | ID=Msa1404020-mRNA-1:exon:19585;Parent=Msa1404020-mRNA-1 |
tig0022985 | exon | 64908 | 65002 | 64908 | ID=Msa1404020-mRNA-1:exon:19584;Parent=Msa1404020-mRNA-1 |
tig0022985 | exon | 64626 | 64772 | 64626 | ID=Msa1404020-mRNA-1:exon:19583;Parent=Msa1404020-mRNA-1 |
tig0022985 | exon | 64254 | 64368 | 64254 | ID=Msa1404020-mRNA-1:exon:19582;Parent=Msa1404020-mRNA-1 |
tig0022985 | exon | 63914 | 63981 | 63914 | ID=Msa1404020-mRNA-1:exon:19581;Parent=Msa1404020-mRNA-1 |
tig0022985 | exon | 63570 | 63701 | 63570 | ID=Msa1404020-mRNA-1:exon:19580;Parent=Msa1404020-mRNA-1 |
tig0022985 | exon | 63258 | 63419 | 63258 | ID=Msa1404020-mRNA-1:exon:19579;Parent=Msa1404020-mRNA-1 |
tig0022985 | exon | 62897 | 63013 | 62897 | ID=Msa1404020-mRNA-1:exon:19578;Parent=Msa1404020-mRNA-1 |
tig0022985 | CDS | 65648 | 65918 | 65648 | ID=Msa1404020-mRNA-1:cds;Parent=Msa1404020-mRNA-1 |
tig0022985 | CDS | 64908 | 65002 | 64908 | ID=Msa1404020-mRNA-1:cds;Parent=Msa1404020-mRNA-1 |
tig0022985 | CDS | 64626 | 64772 | 64626 | ID=Msa1404020-mRNA-1:cds;Parent=Msa1404020-mRNA-1 |
tig0022985 | CDS | 64254 | 64368 | 64254 | ID=Msa1404020-mRNA-1:cds;Parent=Msa1404020-mRNA-1 |
tig0022985 | CDS | 63914 | 63981 | 63914 | ID=Msa1404020-mRNA-1:cds;Parent=Msa1404020-mRNA-1 |
tig0022985 | CDS | 63570 | 63701 | 63570 | ID=Msa1404020-mRNA-1:cds;Parent=Msa1404020-mRNA-1 |
tig0022985 | CDS | 63258 | 63419 | 63258 | ID=Msa1404020-mRNA-1:cds;Parent=Msa1404020-mRNA-1 |
tig0022985 | CDS | 62897 | 63013 | 62897 | ID=Msa1404020-mRNA-1:cds;Parent=Msa1404020-mRNA-1 |
Gene Sequence |
Protein sequence |