AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0359030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0359030 MtrunA17_Chr3g0096311 89.714 175 18 0 168 342 6 180 7.66e-112 322
Msa0359030 MtrunA17_Chr6g0473401 42.268 97 51 2 48 144 88 179 3.02e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0359030 AT1G06500.3 40.789 152 68 4 189 340 2 131 1.15e-28 108
Msa0359030 AT1G06500.1 40.789 152 68 4 189 340 2 131 1.15e-28 108
Msa0359030 AT1G06500.2 40.789 152 68 4 189 340 2 131 1.15e-28 108
Msa0359030 AT1G06500.4 40.789 152 68 4 189 340 2 131 1.15e-28 108

Find 103 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTGCTCCATCAAATATT+TGG 0.194483 3_1:+45875730 Msa0359030:CDS
ACATTGGATGAATTTAAATA+TGG 0.196305 3_1:+45875415 Msa0359030:CDS
CATGCATCCATCCATGATTT+TGG 0.208551 3_1:-45875763 None:intergenic
CACCTTAGCCTCCATCTTCT+TGG 0.210809 3_1:-45873554 None:intergenic
TTCCTTGTTGATGTGAATTC+TGG 0.218734 3_1:-45875327 None:intergenic
GGATGCATGACTTGTTATTT+AGG 0.221973 3_1:+45875777 Msa0359030:exon
GCCTCTCCTCCACTTTCTTC+TGG 0.244916 3_1:-45875538 None:intergenic
GGAAGAGAAACATTTAAATT+AGG 0.257008 3_1:+45875661 Msa0359030:CDS
TGATCGTTACTGTCTGAAAA+TGG 0.262305 3_1:+45875871 Msa0359030:intron
TTAATCTCAAGTAGTGTCTT+TGG 0.263305 3_1:+45876007 Msa0359030:three_prime_UTR
GATGCCTTGTGCGAGAAATA+TGG 0.274158 3_1:+45873968 Msa0359030:CDS
TTCTCAGGTGCATCGTTTAC+AGG 0.296795 3_1:+45874084 Msa0359030:CDS
TATCGACTACTTCAAATAAA+TGG 0.302615 3_1:+45875455 Msa0359030:CDS
ACACCGTGTTCGGAAAATTC+TGG 0.307317 3_1:-45875375 None:intergenic
TAATCTCAAGTAGTGTCTTT+GGG 0.327001 3_1:+45876008 Msa0359030:three_prime_UTR
GGGCTGGTGTTTGGAACTAA+TGG 0.328127 3_1:+45876028 Msa0359030:three_prime_UTR
ACCTTAGCCTCCATCTTCTT+GGG 0.355883 3_1:-45873553 None:intergenic
ATCCAATGTTGTCATTCCTT+TGG 0.364028 3_1:-45875401 None:intergenic
CATTGGATGAATTTAAATAT+GGG 0.366867 3_1:+45875416 Msa0359030:CDS
TGAAGTAGTCGATAAGCTTT+CGG 0.377284 3_1:-45875446 None:intergenic
AGTGTCTTTGGGCTGGTGTT+TGG 0.380506 3_1:+45876019 Msa0359030:three_prime_UTR
AACTCTGTCATTAGGTAGAT+TGG 0.399038 3_1:+45874844 Msa0359030:intron
AAGGGATAAAAGACCGTTTA+CGG 0.400335 3_1:+45874146 Msa0359030:CDS
GATCTTCATTGCCAAAATCA+TGG 0.401657 3_1:+45875752 Msa0359030:CDS
CCTTTGGCTAACACCGTGTT+CGG 0.405151 3_1:-45875385 None:intergenic
TGGAGGAGAGGCAGAGAAGA+AGG 0.410731 3_1:+45875549 Msa0359030:CDS
ATGCCTTGTGCGAGAAATAT+GGG 0.421654 3_1:+45873969 Msa0359030:CDS
GTACGAGTCTTTAGTTTCTC+AGG 0.423024 3_1:+45874069 Msa0359030:CDS
TGTTATTTAGGATTTAGATT+TGG 0.423298 3_1:+45875789 Msa0359030:three_prime_UTR
ACTGTCTGAAAATGGGAATC+TGG 0.437095 3_1:+45875879 Msa0359030:intron
CGCAGGAGAAGAAATGGAAC+TGG 0.438759 3_1:+45874239 Msa0359030:CDS
TGGATACGCAGGAGAAGAAA+TGG 0.441199 3_1:+45874233 Msa0359030:CDS
CACCGTGTTCGGAAAATTCT+GGG 0.447219 3_1:-45875374 None:intergenic
ATGAAGATCCAAATATTTGA+TGG 0.453836 3_1:-45875738 None:intergenic
TTATCCCTTTCTCGTGTCCA+TGG 0.454238 3_1:-45874132 None:intergenic
GGTGCAGTAATTGCATCTCC+TGG 0.455152 3_1:+45875810 Msa0359030:three_prime_UTR
GTTGACTCTTGCCTCCGTCT+TGG 0.455211 3_1:-45875516 None:intergenic
GTGTAAACAAGCTAGGCAAA+AGG 0.464270 3_1:+45875701 Msa0359030:CDS
GATCGTTACTGTCTGAAAAT+GGG 0.472939 3_1:+45875872 Msa0359030:intron
CTCTCTGTGTTACAACAAGA+TGG 0.474414 3_1:+45874022 Msa0359030:CDS
TCACAATCAAGTTCCGTAAA+CGG 0.476630 3_1:-45874159 None:intergenic
TTCATCCATGGACACGAGAA+AGG 0.480661 3_1:+45874127 Msa0359030:CDS
AGGAAAAGAGCTGTAGAAGA+AGG 0.487958 3_1:+45875640 Msa0359030:CDS
CTCAAGTAGTGTCTTTGGGC+TGG 0.490900 3_1:+45876012 Msa0359030:three_prime_UTR
AAGGAGTTGCTTCTGATGAC+AGG 0.492091 3_1:+45874867 Msa0359030:CDS
TTACGGAACTTGATTGTGAT+GGG 0.498055 3_1:+45874163 Msa0359030:CDS
TCTGACATGGGAAAAGTTGA+AGG 0.498075 3_1:+45873946 Msa0359030:CDS
TTAGGTGTTCTCCGAGGCTA+TGG 0.498800 3_1:+45875679 Msa0359030:CDS
GACAAAAGCACAAGGTGTTA+CGG 0.499816 3_1:+45875300 Msa0359030:CDS
GACTACTTCAAATAAATGGT+GGG 0.503994 3_1:+45875459 Msa0359030:CDS
TCGGATGCCACCCAAGAAGA+TGG 0.505869 3_1:+45873543 None:intergenic
CATAGCACTAGCAGTGGAGA+TGG 0.508492 3_1:+45874213 Msa0359030:CDS
GAGAAGAAGGAATGTGAAAC+CGG 0.508809 3_1:+45875562 Msa0359030:CDS
TTTACGGAACTTGATTGTGA+TGG 0.509459 3_1:+45874162 Msa0359030:CDS
GGAAATAAAAGCGTTGAAAG+TGG 0.510593 3_1:+45875346 Msa0359030:CDS
GATGCGTGTGCAAGCTGCGC+AGG 0.515921 3_1:+45873624 Msa0359030:CDS
CTTCAAATAAATGGTGGGGA+TGG 0.520192 3_1:+45875464 Msa0359030:CDS
AACGTTAGACGGCGACGACC+TGG 0.520612 3_1:+45873801 Msa0359030:intron
GCAACAAGCTTAACATGTCC+TGG 0.527680 3_1:-45874263 None:intergenic
CACGAGCGATCAATCTTGCC+AGG 0.529769 3_1:-45873819 None:intergenic
AGAAGAAATGGAACTGGACC+AGG 0.534568 3_1:+45874245 Msa0359030:CDS
ACCCAAGAAGATGGAGGCTA+AGG 0.535086 3_1:+45873552 Msa0359030:CDS
TGTAAACAAGCTAGGCAAAA+GGG 0.535406 3_1:+45875702 Msa0359030:CDS
TTCATTGCCAAAATCATGGA+TGG 0.547716 3_1:+45875756 Msa0359030:CDS
TCATCCATGGACACGAGAAA+GGG 0.549296 3_1:+45874128 Msa0359030:CDS
GAACTTGATTGTGATGGGTC+TGG 0.549406 3_1:+45874168 Msa0359030:CDS
CGACTACTTCAAATAAATGG+TGG 0.553601 3_1:+45875458 Msa0359030:CDS
CCGAACACGGTGTTAGCCAA+AGG 0.554812 3_1:+45875385 Msa0359030:CDS
TAAGAAGCCATGCAGAATGA+TGG 0.555153 3_1:-45875910 None:intergenic
TATGTTCAGTACTTCATCCA+TGG 0.556949 3_1:+45874115 Msa0359030:CDS
ACCAGAAGAAAGTGGAGGAG+AGG 0.572132 3_1:+45875537 Msa0359030:CDS
TTAGCCTCCATCTTCTTGGG+TGG 0.575518 3_1:-45873550 None:intergenic
CTTGCACACGCATCTCAGCA+AGG 0.588107 3_1:-45873615 None:intergenic
AGCAAGGGTTTGCTTGAGCG+TGG 0.588444 3_1:-45873599 None:intergenic
TTGCACACGCATCTCAGCAA+GGG 0.591574 3_1:-45873614 None:intergenic
CTGTCATTAGGTAGATTGGA+AGG 0.599145 3_1:+45874848 Msa0359030:intron
AGGACGATCAATATCTGACA+TGG 0.601903 3_1:+45873933 Msa0359030:CDS
GCTTGTTTACACCATAGCCT+CGG 0.602789 3_1:-45875690 None:intergenic
GGCTATGGTGTAAACAAGCT+AGG 0.604381 3_1:+45875694 Msa0359030:CDS
AAGAGTCAACCAGAAGAAAG+TGG 0.608610 3_1:+45875529 Msa0359030:CDS
TCTCTGTGTTACAACAAGAT+GGG 0.614747 3_1:+45874023 Msa0359030:CDS
TGCCTTGTGCGAGAAATATG+GGG 0.617144 3_1:+45873970 Msa0359030:CDS
TGTTGTACCATCATTCTGCA+TGG 0.619129 3_1:+45875903 Msa0359030:three_prime_UTR
ACTACTTCAAATAAATGGTG+GGG 0.619643 3_1:+45875460 Msa0359030:CDS
GACAGCTCATGTTACAAACC+AGG 0.629970 3_1:-45875828 None:intergenic
AGCAGTGGAGATGGATACGC+AGG 0.631881 3_1:+45874222 Msa0359030:CDS
TGCAACAAGCAAATGATGGG+AGG 0.634860 3_1:+45875278 Msa0359030:CDS
AGCCAAAGGAATGACAACAT+TGG 0.640708 3_1:+45875399 Msa0359030:CDS
CACCAGAATTCACATCAACA+AGG 0.644361 3_1:+45875325 Msa0359030:CDS
TGTGATGGGTCTGGTCACAC+AGG 0.660798 3_1:+45874177 Msa0359030:CDS
GGACGATCAATATCTGACAT+GGG 0.665239 3_1:+45873934 Msa0359030:CDS
GTAGTCGATAAGCTTTCGGA+CGG 0.669763 3_1:-45875442 None:intergenic
GTTGAACATAGCACTAGCAG+TGG 0.672584 3_1:+45874207 Msa0359030:CDS
CATCTTTGTTGAGATCTGTG+AGG 0.675369 3_1:+45875620 Msa0359030:CDS
AAGCTGCGCAGGATCATGAG+CGG 0.675501 3_1:+45873635 Msa0359030:CDS
AGTCAACCAGAAGAAAGTGG+AGG 0.675616 3_1:+45875532 Msa0359030:CDS
AGTAGTGAAGAAACTCGTCA+AGG 0.678227 3_1:+45875595 Msa0359030:CDS
GCCTTGTGCGAGAAATATGG+GGG 0.682618 3_1:+45873971 Msa0359030:CDS
CGTACTGACACAAACCAAGA+CGG 0.693330 3_1:+45875502 Msa0359030:CDS
GATGCCACCCAAGAAGATGG+AGG 0.700602 3_1:+45873546 None:intergenic
GATGGGAGGACAAAAGCACA+AGG 0.714490 3_1:+45875292 Msa0359030:CDS
TTTAAATTAGGTGTTCTCCG+AGG 0.721425 3_1:+45875673 Msa0359030:CDS
ACTGACACAAACCAAGACGG+AGG 0.740979 3_1:+45875505 Msa0359030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAATTACAAATTCTATA+TGG - chr3_1:45875113-45875132 None:intergenic 15.0%
!! ACGATAAATGTTAATTGATA+TGG + chr3_1:45875175-45875194 Msa0359030:intron 20.0%
!! ACATTGGATGAATTTAAATA+TGG + chr3_1:45875415-45875434 Msa0359030:CDS 20.0%
!! CATTGGATGAATTTAAATAT+GGG + chr3_1:45875416-45875435 Msa0359030:CDS 20.0%
!!! TGTTATTTAGGATTTAGATT+TGG + chr3_1:45875789-45875808 Msa0359030:three_prime_UTR 20.0%
!!! CTGTGTTATTGGATTTTTTT+GGG - chr3_1:45874785-45874804 None:intergenic 25.0%
!!! ACTGTGTTATTGGATTTTTT+TGG - chr3_1:45874786-45874805 None:intergenic 25.0%
! AAAAAAATCCAATAACACAG+TGG + chr3_1:45874785-45874804 Msa0359030:intron 25.0%
! AAAAGATGTGGATAGAAAAT+AGG + chr3_1:45874930-45874949 Msa0359030:intron 25.0%
! AAATGGAACATAGAATGTTT+AGG + chr3_1:45874960-45874979 Msa0359030:intron 25.0%
! ATTCTATATGGTATCATAGT+AGG - chr3_1:45875101-45875120 None:intergenic 25.0%
!! TATCGACTACTTCAAATAAA+TGG + chr3_1:45875455-45875474 Msa0359030:CDS 25.0%
! GGAAGAGAAACATTTAAATT+AGG + chr3_1:45875661-45875680 Msa0359030:CDS 25.0%
! ATATTGCTCCATCAAATATT+TGG + chr3_1:45875730-45875749 Msa0359030:CDS 25.0%
! ATGAAGATCCAAATATTTGA+TGG - chr3_1:45875741-45875760 None:intergenic 25.0%
AAACAACAAAGTTGTAGCTA+TGG + chr3_1:45874315-45874334 Msa0359030:intron 30.0%
!! AGTTTTCTGGAAGATTTCTA+AGG + chr3_1:45874378-45874397 Msa0359030:intron 30.0%
AACAGCATAACAGTCATATA+TGG + chr3_1:45874654-45874673 Msa0359030:intron 30.0%
AATAACACAGTGGAATTGAT+CGG + chr3_1:45874795-45874814 Msa0359030:intron 30.0%
TGAAGTGATCATAAAAGATG+TGG + chr3_1:45874918-45874937 Msa0359030:intron 30.0%
AGAAAATAGGCTATTGGAAA+TGG + chr3_1:45874943-45874962 Msa0359030:intron 30.0%
TTTCGATAATGTAATCAGTG+AGG - chr3_1:45875078-45875097 None:intergenic 30.0%
! TTTTGCAACAAGCAAATGAT+GGG + chr3_1:45875275-45875294 Msa0359030:CDS 30.0%
GACTACTTCAAATAAATGGT+GGG + chr3_1:45875459-45875478 Msa0359030:CDS 30.0%
ACTACTTCAAATAAATGGTG+GGG + chr3_1:45875460-45875479 Msa0359030:CDS 30.0%
! TTCACTACTTTCAACTTTTC+CGG - chr3_1:45875584-45875603 None:intergenic 30.0%
TTAATCTCAAGTAGTGTCTT+TGG + chr3_1:45876007-45876026 Msa0359030:three_prime_UTR 30.0%
TAATCTCAAGTAGTGTCTTT+GGG + chr3_1:45876008-45876027 Msa0359030:three_prime_UTR 30.0%
! TTAGATATTTTCGTCAGCCT+TGG + chr3_1:45873711-45873730 Msa0359030:intron 35.0%
AATAGATGAGTTTCGTCAAG+CGG + chr3_1:45873748-45873767 Msa0359030:intron 35.0%
TCTAACGTTGGAAGTTCAAT+TGG - chr3_1:45873790-45873809 None:intergenic 35.0%
ATTGAACTTCCAACGTTAGA+CGG + chr3_1:45873790-45873809 Msa0359030:intron 35.0%
TTGTAATCCCATCCATGAAA+AGG - chr3_1:45873889-45873908 None:intergenic 35.0%
!! GTTTTTCAAAGCCTTATCAG+AGG + chr3_1:45873913-45873932 Msa0359030:intron 35.0%
ATATTGATCGTCCTCTGATA+AGG - chr3_1:45873927-45873946 None:intergenic 35.0%
TCTCTGTGTTACAACAAGAT+GGG + chr3_1:45874023-45874042 Msa0359030:CDS 35.0%
TATGTTCAGTACTTCATCCA+TGG + chr3_1:45874115-45874134 Msa0359030:CDS 35.0%
AAGGGATAAAAGACCGTTTA+CGG + chr3_1:45874146-45874165 Msa0359030:CDS 35.0%
TCACAATCAAGTTCCGTAAA+CGG - chr3_1:45874162-45874181 None:intergenic 35.0%
TTTACGGAACTTGATTGTGA+TGG + chr3_1:45874162-45874181 Msa0359030:CDS 35.0%
TTACGGAACTTGATTGTGAT+GGG + chr3_1:45874163-45874182 Msa0359030:CDS 35.0%
!! ACATGTTAAGCTTGTTGCAA+TGG + chr3_1:45874268-45874287 Msa0359030:intron 35.0%
!! CATGTTAAGCTTGTTGCAAT+GGG + chr3_1:45874269-45874288 Msa0359030:intron 35.0%
! TTTCTGGAAGATTTCTAAGG+TGG + chr3_1:45874381-45874400 Msa0359030:intron 35.0%
!! ATGTGGTGGTTTTTAGGAAT+AGG + chr3_1:45874404-45874423 Msa0359030:intron 35.0%
! TCGAATTGTTTCAGTCTTGT+AGG + chr3_1:45874477-45874496 Msa0359030:intron 35.0%
! ATTGTTTCAGTCTTGTAGGA+AGG + chr3_1:45874481-45874500 Msa0359030:intron 35.0%
! TTGTTTCAGTCTTGTAGGAA+GGG + chr3_1:45874482-45874501 Msa0359030:intron 35.0%
!! CCATTGTTTCTCTTTTCCAT+CGG - chr3_1:45874548-45874567 None:intergenic 35.0%
CCTGCTGAGAAAATTTAGTT+TGG - chr3_1:45874576-45874595 None:intergenic 35.0%
! CCAAACTAAATTTTCTCAGC+AGG + chr3_1:45874573-45874592 Msa0359030:intron 35.0%
GCATAACAGTCATATATGGT+CGG + chr3_1:45874658-45874677 Msa0359030:intron 35.0%
!!! ATTTTTTTGGGTCTCTTGCA+TGG - chr3_1:45874773-45874792 None:intergenic 35.0%
GATCAATTCCACTGTGTTAT+TGG - chr3_1:45874796-45874815 None:intergenic 35.0%
AACTCTGTCATTAGGTAGAT+TGG + chr3_1:45874844-45874863 Msa0359030:intron 35.0%
! TTTTGTCAGCAGTTAAGTAG+TGG + chr3_1:45874894-45874913 Msa0359030:intron 35.0%
GTGGATAGAAAATAGGCTAT+TGG + chr3_1:45874937-45874956 Msa0359030:intron 35.0%
!! GTAGAAGCGCTGAAATAATA+TGG + chr3_1:45875002-45875021 Msa0359030:intron 35.0%
AACTTGTCAGAAAGCTGTTA+TGG + chr3_1:45875026-45875045 Msa0359030:intron 35.0%
AAAGCTGTTATGGTGACATT+CGG + chr3_1:45875036-45875055 Msa0359030:intron 35.0%
GTTAGAGATAGAAGTGAATG+TGG - chr3_1:45875151-45875170 None:intergenic 35.0%
! GTTTTGCAACAAGCAAATGA+TGG + chr3_1:45875274-45875293 Msa0359030:CDS 35.0%
TTCCTTGTTGATGTGAATTC+TGG - chr3_1:45875330-45875349 None:intergenic 35.0%
!! GGAAATAAAAGCGTTGAAAG+TGG + chr3_1:45875346-45875365 Msa0359030:CDS 35.0%
ATCCAATGTTGTCATTCCTT+TGG - chr3_1:45875404-45875423 None:intergenic 35.0%
TGAAGTAGTCGATAAGCTTT+CGG - chr3_1:45875449-45875468 None:intergenic 35.0%
CGACTACTTCAAATAAATGG+TGG + chr3_1:45875458-45875477 Msa0359030:CDS 35.0%
TTTAAATTAGGTGTTCTCCG+AGG + chr3_1:45875673-45875692 Msa0359030:CDS 35.0%
TGTAAACAAGCTAGGCAAAA+GGG + chr3_1:45875702-45875721 Msa0359030:CDS 35.0%
GATCTTCATTGCCAAAATCA+TGG + chr3_1:45875752-45875771 Msa0359030:CDS 35.0%
TTCATTGCCAAAATCATGGA+TGG + chr3_1:45875756-45875775 Msa0359030:CDS 35.0%
!! GGATGCATGACTTGTTATTT+AGG + chr3_1:45875777-45875796 Msa0359030:exon 35.0%
TGATCGTTACTGTCTGAAAA+TGG + chr3_1:45875871-45875890 Msa0359030:intron 35.0%
GATCGTTACTGTCTGAAAAT+GGG + chr3_1:45875872-45875891 Msa0359030:intron 35.0%
ATTATTACTCGAAGCTGTGC+AGG + chr3_1:45873667-45873686 Msa0359030:intron 40.0%
GCTTGACGAAACTCATCTAT+TGG - chr3_1:45873749-45873768 None:intergenic 40.0%
GTTTGTCAGGACAGAACTAT+AGG + chr3_1:45873844-45873863 Msa0359030:intron 40.0%
ACTATAGGTGAAGGTGAGTT+TGG + chr3_1:45873859-45873878 Msa0359030:intron 40.0%
AGGACGATCAATATCTGACA+TGG + chr3_1:45873933-45873952 Msa0359030:CDS 40.0%
GGACGATCAATATCTGACAT+GGG + chr3_1:45873934-45873953 Msa0359030:CDS 40.0%
TCTGACATGGGAAAAGTTGA+AGG + chr3_1:45873946-45873965 Msa0359030:CDS 40.0%
ATGCCTTGTGCGAGAAATAT+GGG + chr3_1:45873969-45873988 Msa0359030:CDS 40.0%
CTCTCTGTGTTACAACAAGA+TGG + chr3_1:45874022-45874041 Msa0359030:CDS 40.0%
! GTACGAGTCTTTAGTTTCTC+AGG + chr3_1:45874069-45874088 Msa0359030:CDS 40.0%
CAACAAAGTTGTAGCTATGG+TGG + chr3_1:45874318-45874337 Msa0359030:intron 40.0%
!! GAAGATTTCTAAGGTGGATG+TGG + chr3_1:45874387-45874406 Msa0359030:intron 40.0%
CCGATGGAAAAGAGAAACAA+TGG + chr3_1:45874545-45874564 Msa0359030:intron 40.0%
AACAGTCATATATGGTCGGT+TGG + chr3_1:45874662-45874681 Msa0359030:intron 40.0%
ACAGTCATATATGGTCGGTT+GGG + chr3_1:45874663-45874682 Msa0359030:intron 40.0%
! ATATATGGTCGGTTGGGTTT+TGG + chr3_1:45874669-45874688 Msa0359030:intron 40.0%
! TATATGGTCGGTTGGGTTTT+GGG + chr3_1:45874670-45874689 Msa0359030:intron 40.0%
GTGTGTGAAACTCTGTCATT+AGG + chr3_1:45874836-45874855 Msa0359030:intron 40.0%
CTGTCATTAGGTAGATTGGA+AGG + chr3_1:45874848-45874867 Msa0359030:intron 40.0%
! GACAAAAGCACAAGGTGTTA+CGG + chr3_1:45875300-45875319 Msa0359030:CDS 40.0%
CACCAGAATTCACATCAACA+AGG + chr3_1:45875325-45875344 Msa0359030:CDS 40.0%
AGCCAAAGGAATGACAACAT+TGG + chr3_1:45875399-45875418 Msa0359030:CDS 40.0%
! CTTCAAATAAATGGTGGGGA+TGG + chr3_1:45875464-45875483 Msa0359030:CDS 40.0%
AAGAGTCAACCAGAAGAAAG+TGG + chr3_1:45875529-45875548 Msa0359030:CDS 40.0%
GAGAAGAAGGAATGTGAAAC+CGG + chr3_1:45875562-45875581 Msa0359030:CDS 40.0%
AGTAGTGAAGAAACTCGTCA+AGG + chr3_1:45875595-45875614 Msa0359030:CDS 40.0%
CATCTTTGTTGAGATCTGTG+AGG + chr3_1:45875620-45875639 Msa0359030:CDS 40.0%
AGGAAAAGAGCTGTAGAAGA+AGG + chr3_1:45875640-45875659 Msa0359030:CDS 40.0%
GTGTAAACAAGCTAGGCAAA+AGG + chr3_1:45875701-45875720 Msa0359030:CDS 40.0%
! CATGCATCCATCCATGATTT+TGG - chr3_1:45875766-45875785 None:intergenic 40.0%
CACGACTGTATAACAAAGAG+CGG - chr3_1:45875853-45875872 None:intergenic 40.0%
ACTGTCTGAAAATGGGAATC+TGG + chr3_1:45875879-45875898 Msa0359030:intron 40.0%
TGTTGTACCATCATTCTGCA+TGG + chr3_1:45875903-45875922 Msa0359030:three_prime_UTR 40.0%
TAAGAAGCCATGCAGAATGA+TGG - chr3_1:45875913-45875932 None:intergenic 40.0%
ACCTTAGCCTCCATCTTCTT+GGG - chr3_1:45873556-45873575 None:intergenic 45.0%
!! ATTGGTCGTCAAGTTGACCA+AGG - chr3_1:45873731-45873750 None:intergenic 45.0%
CAGGACAGAACTATAGGTGA+AGG + chr3_1:45873850-45873869 Msa0359030:intron 45.0%
!! GAGTTTGGCTCACCTTTTCA+TGG + chr3_1:45873874-45873893 Msa0359030:intron 45.0%
! TTGGCTCACCTTTTCATGGA+TGG + chr3_1:45873878-45873897 Msa0359030:intron 45.0%
! TGGCTCACCTTTTCATGGAT+GGG + chr3_1:45873879-45873898 Msa0359030:intron 45.0%
GATGCCTTGTGCGAGAAATA+TGG + chr3_1:45873968-45873987 Msa0359030:CDS 45.0%
TGCCTTGTGCGAGAAATATG+GGG + chr3_1:45873970-45873989 Msa0359030:CDS 45.0%
TTCTCAGGTGCATCGTTTAC+AGG + chr3_1:45874084-45874103 Msa0359030:CDS 45.0%
TTCATCCATGGACACGAGAA+AGG + chr3_1:45874127-45874146 Msa0359030:CDS 45.0%
TCATCCATGGACACGAGAAA+GGG + chr3_1:45874128-45874147 Msa0359030:CDS 45.0%
TTATCCCTTTCTCGTGTCCA+TGG - chr3_1:45874135-45874154 None:intergenic 45.0%
!! GAACTTGATTGTGATGGGTC+TGG + chr3_1:45874168-45874187 Msa0359030:CDS 45.0%
GTTGAACATAGCACTAGCAG+TGG + chr3_1:45874207-45874226 Msa0359030:CDS 45.0%
TGGATACGCAGGAGAAGAAA+TGG + chr3_1:45874233-45874252 Msa0359030:CDS 45.0%
AGAAGAAATGGAACTGGACC+AGG + chr3_1:45874245-45874264 Msa0359030:CDS 45.0%
GCAACAAGCTTAACATGTCC+TGG - chr3_1:45874266-45874285 None:intergenic 45.0%
!! GTTAAGCTTGTTGCAATGGG+TGG + chr3_1:45874272-45874291 Msa0359030:intron 45.0%
GAAATTTGCAGTGTAGCCGA+TGG + chr3_1:45874340-45874359 Msa0359030:intron 45.0%
! TCGACTGTGTTTGCTACCAT+CGG - chr3_1:45874359-45874378 None:intergenic 45.0%
! GCAAACACAGTCGAGTTTTC+TGG + chr3_1:45874365-45874384 Msa0359030:intron 45.0%
!! GATTTCTAAGGTGGATGTGG+TGG + chr3_1:45874390-45874409 Msa0359030:intron 45.0%
! AGGTGGATGTGGTGGTTTTT+AGG + chr3_1:45874398-45874417 Msa0359030:intron 45.0%
CTAGCGATGATTCAACTACC+AGG - chr3_1:45874508-45874527 None:intergenic 45.0%
! TGCTAAGAGAAGTACACCGA+TGG + chr3_1:45874529-45874548 Msa0359030:intron 45.0%
AGATGCTGTGCCATGAAAAC+TGG + chr3_1:45874724-45874743 Msa0359030:intron 45.0%
GTTTCACACACATACGCTGT+TGG - chr3_1:45874827-45874846 None:intergenic 45.0%
AAGGAGTTGCTTCTGATGAC+AGG + chr3_1:45874867-45874886 Msa0359030:CDS 45.0%
! TGCAACAAGCAAATGATGGG+AGG + chr3_1:45875278-45875297 Msa0359030:CDS 45.0%
CACCGTGTTCGGAAAATTCT+GGG - chr3_1:45875377-45875396 None:intergenic 45.0%
ACACCGTGTTCGGAAAATTC+TGG - chr3_1:45875378-45875397 None:intergenic 45.0%
GTAGTCGATAAGCTTTCGGA+CGG - chr3_1:45875445-45875464 None:intergenic 45.0%
! CGTACTGACACAAACCAAGA+CGG + chr3_1:45875502-45875521 Msa0359030:CDS 45.0%
AGTCAACCAGAAGAAAGTGG+AGG + chr3_1:45875532-45875551 Msa0359030:CDS 45.0%
GCTTGTTTACACCATAGCCT+CGG - chr3_1:45875693-45875712 None:intergenic 45.0%
GGCTATGGTGTAAACAAGCT+AGG + chr3_1:45875694-45875713 Msa0359030:CDS 45.0%
GACAGCTCATGTTACAAACC+AGG - chr3_1:45875831-45875850 None:intergenic 45.0%
TTAGCCTCCATCTTCTTGGG+TGG - chr3_1:45873553-45873572 None:intergenic 50.0%
ACCCAAGAAGATGGAGGCTA+AGG + chr3_1:45873552-45873571 Msa0359030:CDS 50.0%
CACCTTAGCCTCCATCTTCT+TGG - chr3_1:45873557-45873576 None:intergenic 50.0%
TTGCACACGCATCTCAGCAA+GGG - chr3_1:45873617-45873636 None:intergenic 50.0%
GCCTTGTGCGAGAAATATGG+GGG + chr3_1:45873971-45873990 Msa0359030:CDS 50.0%
TCCCCCATATTTCTCGCACA+AGG - chr3_1:45873975-45873994 None:intergenic 50.0%
GAAATATGGGGGACTCAGAG+AGG + chr3_1:45873982-45874001 Msa0359030:CDS 50.0%
CATAGCACTAGCAGTGGAGA+TGG + chr3_1:45874213-45874232 Msa0359030:CDS 50.0%
CGCAGGAGAAGAAATGGAAC+TGG + chr3_1:45874239-45874258 Msa0359030:CDS 50.0%
AGAAACTGTAGCGCATGAGC+TGG + chr3_1:45874436-45874455 Msa0359030:intron 50.0%
GCTGTTGTGCACATCACGTT+AGG - chr3_1:45874640-45874659 None:intergenic 50.0%
TGGCACAGCATCTCTAGCAT+GGG - chr3_1:45874717-45874736 None:intergenic 50.0%
ATGGCACAGCATCTCTAGCA+TGG - chr3_1:45874718-45874737 None:intergenic 50.0%
! GCTTCTCAGGCCAGTTTTCA+TGG - chr3_1:45874737-45874756 None:intergenic 50.0%
! AAACTGGCCTGAGAAGCTGT+CGG + chr3_1:45874740-45874759 Msa0359030:intron 50.0%
GTTATGGTGACATTCGGCTG+CGG + chr3_1:45875042-45875061 Msa0359030:intron 50.0%
! GATGGGAGGACAAAAGCACA+AGG + chr3_1:45875292-45875311 Msa0359030:CDS 50.0%
! CGCCCAGAATTTTCCGAACA+CGG + chr3_1:45875372-45875391 Msa0359030:CDS 50.0%
CCTTTGGCTAACACCGTGTT+CGG - chr3_1:45875388-45875407 None:intergenic 50.0%
ACTGACACAAACCAAGACGG+AGG + chr3_1:45875505-45875524 Msa0359030:CDS 50.0%
ACCAGAAGAAAGTGGAGGAG+AGG + chr3_1:45875537-45875556 Msa0359030:CDS 50.0%
TTAGGTGTTCTCCGAGGCTA+TGG + chr3_1:45875679-45875698 Msa0359030:CDS 50.0%
GGTGCAGTAATTGCATCTCC+TGG + chr3_1:45875810-45875829 Msa0359030:three_prime_UTR 50.0%
CTCAAGTAGTGTCTTTGGGC+TGG + chr3_1:45876012-45876031 Msa0359030:three_prime_UTR 50.0%
!! AGTGTCTTTGGGCTGGTGTT+TGG + chr3_1:45876019-45876038 Msa0359030:three_prime_UTR 50.0%
! GGGCTGGTGTTTGGAACTAA+TGG + chr3_1:45876028-45876047 Msa0359030:three_prime_UTR 50.0%
! AGCAAGGGTTTGCTTGAGCG+TGG - chr3_1:45873602-45873621 None:intergenic 55.0%
CTTGCACACGCATCTCAGCA+AGG - chr3_1:45873618-45873637 None:intergenic 55.0%
AAGCTGCGCAGGATCATGAG+CGG + chr3_1:45873635-45873654 Msa0359030:CDS 55.0%
CACGAGCGATCAATCTTGCC+AGG - chr3_1:45873822-45873841 None:intergenic 55.0%
GATCGCTCGTGCAGTTTGTC+AGG + chr3_1:45873831-45873850 Msa0359030:intron 55.0%
!! TGTGATGGGTCTGGTCACAC+AGG + chr3_1:45874177-45874196 Msa0359030:CDS 55.0%
AGCAGTGGAGATGGATACGC+AGG + chr3_1:45874222-45874241 Msa0359030:CDS 55.0%
! TCAGTCTTGTAGGAAGGGCC+TGG + chr3_1:45874487-45874506 Msa0359030:intron 55.0%
!!! GTTGGGTTTTGGGAGTGGCT+GGG + chr3_1:45874680-45874699 Msa0359030:intron 55.0%
! CCGAACACGGTGTTAGCCAA+AGG + chr3_1:45875385-45875404 Msa0359030:CDS 55.0%
! GTTGACTCTTGCCTCCGTCT+TGG - chr3_1:45875519-45875538 None:intergenic 55.0%
GCCTCTCCTCCACTTTCTTC+TGG - chr3_1:45875541-45875560 None:intergenic 55.0%
TGGAGGAGAGGCAGAGAAGA+AGG + chr3_1:45875549-45875568 Msa0359030:CDS 55.0%
TGCGCAGGATCATGAGCGGT+TGG + chr3_1:45873639-45873658 Msa0359030:intron 60.0%
AGGTCGTCGCCGTCTAACGT+TGG - chr3_1:45873802-45873821 None:intergenic 60.0%
AACGTTAGACGGCGACGACC+TGG + chr3_1:45873801-45873820 Msa0359030:intron 60.0%
TGGGGGACTCAGAGAGGCTA+AGG + chr3_1:45873988-45874007 Msa0359030:CDS 60.0%
!!! GGTCGGTTGGGTTTTGGGAG+TGG + chr3_1:45874675-45874694 Msa0359030:intron 60.0%
!!! GGTTGGGTTTTGGGAGTGGC+TGG + chr3_1:45874679-45874698 Msa0359030:intron 60.0%
!!! GTTTTGGGAGTGGCTGGGCA+TGG + chr3_1:45874685-45874704 Msa0359030:intron 60.0%
TGCGCATCCGACAGCTTCTC+AGG - chr3_1:45874750-45874769 None:intergenic 60.0%
GATGCGTGTGCAAGCTGCGC+AGG + chr3_1:45873624-45873643 Msa0359030:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 45873547 45876058 45873547 ID=Msa0359030;Name=Msa0359030
chr3_1 mRNA 45873547 45876058 45873547 ID=Msa0359030-mRNA-1;Parent=Msa0359030;Name=Msa0359030-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.2|0.33|0.5|0.6|0.5|6|232|342
chr3_1 exon 45873547 45873656 45873547 ID=Msa0359030-mRNA-1:exon:8111;Parent=Msa0359030-mRNA-1
chr3_1 exon 45873809 45873843 45873809 ID=Msa0359030-mRNA-1:exon:8112;Parent=Msa0359030-mRNA-1
chr3_1 exon 45873933 45874271 45873933 ID=Msa0359030-mRNA-1:exon:8113;Parent=Msa0359030-mRNA-1
chr3_1 exon 45874858 45874888 45874858 ID=Msa0359030-mRNA-1:exon:8114;Parent=Msa0359030-mRNA-1
chr3_1 exon 45875273 45875840 45875273 ID=Msa0359030-mRNA-1:exon:8115;Parent=Msa0359030-mRNA-1
chr3_1 exon 45875881 45876058 45875881 ID=Msa0359030-mRNA-1:exon:8116;Parent=Msa0359030-mRNA-1
chr3_1 CDS 45873547 45873656 45873547 ID=Msa0359030-mRNA-1:cds;Parent=Msa0359030-mRNA-1
chr3_1 CDS 45873809 45873843 45873809 ID=Msa0359030-mRNA-1:cds;Parent=Msa0359030-mRNA-1
chr3_1 CDS 45873933 45874271 45873933 ID=Msa0359030-mRNA-1:cds;Parent=Msa0359030-mRNA-1
chr3_1 CDS 45874858 45874888 45874858 ID=Msa0359030-mRNA-1:cds;Parent=Msa0359030-mRNA-1
chr3_1 CDS 45875273 45875786 45875273 ID=Msa0359030-mRNA-1:cds;Parent=Msa0359030-mRNA-1
chr3_1 three_prime_UTR 45875787 45875840 45875787 ID=Msa0359030-mRNA-1:three_prime_utr;Parent=Msa0359030-mRNA-1
chr3_1 three_prime_UTR 45875881 45876058 45875881 ID=Msa0359030-mRNA-1:three_prime_utr;Parent=Msa0359030-mRNA-1
Gene Sequence

>Msa0359030

ATGCCACCCAAGAAGATGGAGGCTAAGGTGAATGCAGTAACAAGTGAAGTTGCCACGCTCAAGCAAACCCTTGCTGAGATGCGTGTGCAAGCTGCGCAGGATCATGAGCGACGGCGACGACCTGGCAAGATTGATCGCTCGTGCAAGGACGATCAATATCTGACATGGGAAAAGTTGAAGGATGCCTTGTGCGAGAAATATGGGGGACTCAGAGAGGCTAAGGTATATGAACAACTCTCTGTGTTACAACAAGATGGGAGTGTTGATGAATACATCAGAGAGTACGAGTCTTTAGTTTCTCAGGTGCATCGTTTACAGGAAGCGCAGTATGTTCAGTACTTCATCCATGGACACGAGAAAGGGATAAAAGACCGTTTACGGAACTTGATTGTGATGGGTCTGGTCACACAGGCAAAATTGTTGAACATAGCACTAGCAGTGGAGATGGATACGCAGGAGAAGAAATGGAACTGGACCAGGACATGTAGATTGGAAGGAGTTGCTTCTGATGACAGTGTTTTGCAACAAGCAAATGATGGGAGGACAAAAGCACAAGGTGTTACGGTGCACCAGAATTCACATCAACAAGGAAATAAAAGCGTTGAAAGTGGACGCGCCCAGAATTTTCCGAACACGGTGTTAGCCAAAGGAATGACAACATTGGATGAATTTAAATATGGGTTTCCGTCCGAAAGCTTATCGACTACTTCAAATAAATGGTGGGGATGGAGTGATTCTGACGATCGTACTGACACAAACCAAGACGGAGGCAAGAGTCAACCAGAAGAAAGTGGAGGAGAGGCAGAGAAGAAGGAATGTGAAACCGGAAAAGTTGAAAGTAGTGAAGAAACTCGTCAAGGTTCATCTTTGTTGAGATCTGTGAGGAAAAGAGCTGTAGAAGAAGGAAGAGAAACATTTAAATTAGGTGTTCTCCGAGGCTATGGTGTAAACAAGCTAGGCAAAAGGGAGAAAATATTGCTCCATCAAATATTTGGATCTTCATTGCCAAAATCATGGATGGATGCATGA

Protein sequence

>Msa0359030

MPPKKMEAKVNAVTSEVATLKQTLAEMRVQAAQDHERRRRPGKIDRSCKDDQYLTWEKLKDALCEKYGGLREAKVYEQLSVLQQDGSVDEYIREYESLVSQVHRLQEAQYVQYFIHGHEKGIKDRLRNLIVMGLVTQAKLLNIALAVEMDTQEKKWNWTRTCRLEGVASDDSVLQQANDGRTKAQGVTVHQNSHQQGNKSVESGRAQNFPNTVLAKGMTTLDEFKYGFPSESLSTTSNKWWGWSDSDDRTDTNQDGGKSQPEESGGEAEKKECETGKVESSEETRQGSSLLRSVRKRAVEEGRETFKLGVLRGYGVNKLGKREKILLHQIFGSSLPKSWMDA*