AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0973100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973100 MtrunA17_Chr6g0452021 81.793 357 48 2 33 389 117 456 0.0 583
Msa0973100 MtrunA17_Chr6g0452021 37.419 310 101 10 1 308 1 219 1.08e-23 102
Msa0973100 MtrunA17_Chr6g0452001 65.672 335 59 5 66 351 157 484 6.95e-129 402
Msa0973100 MtrunA17_Chr6g0452001 46.825 126 45 2 2 120 15 125 2.79e-15 78.2
Msa0973100 MtrunA17_Chr8g0364231 38.043 368 141 7 66 349 136 500 1.89e-56 200
Msa0973100 MtrunA17_Chr8g0364231 36.975 119 48 3 2 120 13 104 2.53e-11 65.9
Msa0973100 MtrunA17_Chr5g0415031 35.372 376 157 9 57 351 128 498 8.72e-46 169
Msa0973100 MtrunA17_Chr8g0362641 37.302 126 75 1 161 282 64 189 1.14e-17 82.8
Msa0973100 MtrunA17_Chr8g0362641 38.298 94 58 0 204 297 192 285 9.44e-15 74.3
Msa0973100 MtrunA17_Chr7g0218901 43.636 55 31 0 66 120 1 55 3.25e-12 61.2
Msa0973100 MtrunA17_Chr5g0415081 42.667 75 30 1 46 120 23 84 1.72e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973100 AT5G15020.2 49.552 335 118 7 66 351 144 476 4.04e-84 280
Msa0973100 AT5G15020.2 45.833 120 45 4 2 120 14 114 8.81e-14 73.9
Msa0973100 AT5G15020.1 49.552 335 118 7 66 351 144 476 4.57e-84 280
Msa0973100 AT5G15020.1 45.833 120 45 4 2 120 14 114 8.75e-14 73.9
Msa0973100 AT3G01320.1 49.249 333 121 8 66 351 150 481 5.42e-80 268
Msa0973100 AT3G01320.1 37.190 121 59 2 2 120 14 119 1.45e-12 70.1
Msa0973100 AT3G01320.2 47.147 333 116 9 66 351 150 469 2.69e-73 249
Msa0973100 AT3G01320.2 37.190 121 59 2 2 120 14 119 1.56e-12 70.1
Msa0973100 AT1G24190.2 36.858 331 158 10 66 349 108 434 1.86e-52 188
Msa0973100 AT1G24190.3 36.858 331 158 10 66 349 108 434 1.99e-52 188
Msa0973100 AT1G24190.1 36.119 335 159 11 66 349 108 438 2.21e-49 179
Msa0973100 AT1G70060.2 34.493 345 164 6 66 349 109 452 5.48e-46 170
Msa0973100 AT1G70060.1 34.493 345 164 6 66 349 109 452 5.48e-46 170
Msa0973100 AT1G24200.1 65.455 55 19 0 66 120 105 159 1.10e-16 78.2
Msa0973100 AT1G10450.2 55.556 72 31 1 66 136 125 196 2.06e-16 82.0
Msa0973100 AT1G10450.1 55.556 72 31 1 66 136 125 196 2.06e-16 82.0
Msa0973100 AT1G10450.3 55.556 72 31 1 66 136 176 247 2.43e-16 81.6
Msa0973100 AT1G59890.1 62.500 56 21 0 66 121 137 192 5.22e-15 77.8
Msa0973100 AT1G59890.2 62.500 56 21 0 66 121 137 192 5.27e-15 77.4
Msa0973100 AT1G59890.3 62.500 56 21 0 66 121 137 192 5.41e-15 77.4
Msa0973100 AT1G59890.4 62.500 56 21 0 66 121 137 192 5.50e-15 77.4
Msa0973100 AT1G70030.1 50.909 55 26 1 66 120 104 157 8.28e-11 60.5

Find 83 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCGAATTCAATGATTATT+TGG 0.184994 6_4:-5440433 Msa0973100:CDS
AATCACTATGGTCCTTAAAA+AGG 0.198941 6_4:+5441870 None:intergenic
TGTAAACATGCTCGTCATTT+TGG 0.199549 6_4:+5442091 None:intergenic
AAAGAATGATTTACAAAATA+TGG 0.232835 6_4:-5440701 Msa0973100:intron
GCATGTTTACAAATCATTCT+TGG 0.291056 6_4:-5442079 Msa0973100:CDS
ATCAATGGTTGTCAGCTTCC+TGG 0.311201 6_4:+5442587 None:intergenic
TGTCTACGAAGCTCTGAAAA+TGG 0.317697 6_4:-5442663 Msa0973100:intron
TCCACTCAACATGCTTCATT+TGG 0.357826 6_4:-5441800 Msa0973100:CDS
GGTGAAGGTGGAGTTGTTAA+TGG 0.358574 6_4:-5442630 Msa0973100:CDS
GGAGTTCACTAGATTCTTAC+CGG 0.365960 6_4:-5441840 Msa0973100:CDS
CGCTACTGATGGTCATTTAT+CGG 0.366830 6_4:-5440123 Msa0973100:CDS
AGCAAAGGAAACGTGAGATC+AGG 0.374268 6_4:-5441712 Msa0973100:CDS
AAAGTATGACATGTTCCTTC+AGG 0.383357 6_4:-5442514 Msa0973100:intron
TTGGAGCGTTGTGAAAATAC+TGG 0.388042 6_4:-5440414 Msa0973100:intron
GAAGGCACTTCAAGAATGTT+TGG 0.395784 6_4:+5440749 None:intergenic
TTTGCAGACGGGTTTCTTGC+TGG 0.396888 6_4:-5440313 Msa0973100:intron
ACTGCCTCCACAGTGATTGC+TGG 0.397139 6_4:+5439724 None:intergenic
ACATCCATCCATCTCACGCT+TGG 0.419117 6_4:+5440064 None:intergenic
GTTAAGAAGGCTGAAGCTAA+TGG 0.427895 6_4:-5441635 Msa0973100:CDS
AAGTTTATGTGCGAAAGTTA+AGG 0.441373 6_4:-5440797 Msa0973100:CDS
TGATGCTTTATCTTATTTGA+AGG 0.444496 6_4:-5442568 Msa0973100:CDS
AACGTGAGATCAGGGATATA+AGG 0.446943 6_4:-5441703 Msa0973100:CDS
CATCCATCCATCTCACGCTT+GGG 0.450025 6_4:+5440065 None:intergenic
TTTCAGGTGACTGATTTACT+TGG 0.452643 6_4:-5440474 Msa0973100:intron
GAGTGTTGAACATCCTGATC+TGG 0.452673 6_4:-5441765 Msa0973100:CDS
CGTCGGCAAACATTGTTCTC+CGG 0.456875 6_4:-5439979 Msa0973100:CDS
CAAATAAGATAAAGCATCAA+TGG 0.460162 6_4:+5442572 None:intergenic
TTTCTGATGTAGGCCTAAGC+TGG 0.463724 6_4:-5439808 Msa0973100:intron
GCTAAGGTCAAGTTCTTGAA+TGG 0.463830 6_4:+5440001 None:intergenic
GGTGGAGTTGTTAATGGCGG+TGG 0.467292 6_4:-5442624 Msa0973100:CDS
TCAAGATGATGTGGCTTCAA+TGG 0.467579 6_4:+5438068 None:intergenic
TCAATGGTTGTCAGCTTCCT+GGG 0.471642 6_4:+5442588 None:intergenic
GTTTCGTCGTCATCCAGATC+AGG 0.486043 6_4:+5441752 None:intergenic
AATGGAGGTGGCAGTGGTGA+AGG 0.491542 6_4:-5442645 Msa0973100:CDS
GTCTTCGTCGTCCTCCACCT+TGG 0.506749 6_4:+5440094 None:intergenic
GTCGGCAAACATTGTTCTCC+GGG 0.512223 6_4:-5439978 Msa0973100:CDS
AACAATGTTTGCCGACGCTA+AGG 0.513153 6_4:+5439985 None:intergenic
TTCCATTGCTAAAATCATGA+AGG 0.516038 6_4:+5440731 None:intergenic
GGAGGTGGCAGTGGTGAAGG+TGG 0.519872 6_4:-5442642 Msa0973100:CDS
GGTGACAAGTCAGCCGTCGC+AGG 0.523912 6_4:-5439762 Msa0973100:CDS
CAAAGAACCCAAGCGTGAGA+TGG 0.525550 6_4:-5440072 Msa0973100:CDS
GTAGGTAGAAGCTGGTAGCC+CGG 0.528926 6_4:+5439960 None:intergenic
GGAGTTGTTAATGGCGGTGG+AGG 0.530443 6_4:-5442621 Msa0973100:CDS
GAAGGTTCTAGTGAATTATC+CGG 0.534759 6_4:+5441821 None:intergenic
GAACCCAAGCGTGAGATGGA+TGG 0.540388 6_4:-5440068 Msa0973100:CDS
ATCAGCACGTGATGAACCTA+CGG 0.547401 6_4:+5443281 None:intergenic
ACTCCTCAAGCAAATCACTA+TGG 0.556751 6_4:+5441858 None:intergenic
TGAACTTGTGCAAGGAGCAA+AGG 0.558619 6_4:-5441727 Msa0973100:CDS
TCTGAAAATGGAGGTGGCAG+TGG 0.559504 6_4:-5442651 Msa0973100:CDS
GCAAAGGAAACGTGAGATCA+GGG 0.565159 6_4:-5441711 Msa0973100:CDS
AATGAAGCATGTTGAGTGGA+AGG 0.569039 6_4:+5441803 None:intergenic
GGACCATAGTGATTTGCTTG+AGG 0.570203 6_4:-5441861 Msa0973100:CDS
TGTCGTCAGTAGGTAGAAGC+TGG 0.571961 6_4:+5439952 None:intergenic
TCAGCCGTCGCAGGTTGCAG+CGG 0.572026 6_4:-5439753 Msa0973100:CDS
ATCGGAATCATCCAAGGTGG+AGG 0.575755 6_4:-5440105 Msa0973100:CDS
TATGTGCGAAAGTTAAGGAG+AGG 0.576086 6_4:-5440792 Msa0973100:CDS
AACATACAAGGAGAAATACA+TGG 0.576965 6_4:-5440030 Msa0973100:CDS
GTGGAGGTGCAAGTACTCCC+AGG 0.577879 6_4:-5442605 Msa0973100:CDS
CGAAGCTCTGAAAATGGAGG+TGG 0.578837 6_4:-5442657 Msa0973100:intron
CTCACTGTAAACCTCAGTAA+TGG 0.592350 6_4:+5442023 None:intergenic
TGTATAACAATGTCCAGCTT+AGG 0.593330 6_4:+5439795 None:intergenic
TCAGAGCCACTCGCTACTGA+TGG 0.597556 6_4:-5440134 Msa0973100:intron
AGCTTCTACCTACTGACGAC+AGG 0.599591 6_4:-5439950 Msa0973100:intron
CAAGAACTTGACCTTAGCGT+CGG 0.605982 6_4:-5439996 Msa0973100:CDS
TCATTTATCGGAATCATCCA+AGG 0.613554 6_4:-5440111 Msa0973100:CDS
ACGACCGCTGCAACCTGCGA+CGG 0.621416 6_4:+5439749 None:intergenic
ATGAAATTCAAACGTCCCGT+AGG 0.623131 6_4:-5443297 Msa0973100:CDS
CGAAACAATGAACTTGTGCA+AGG 0.629579 6_4:-5441735 Msa0973100:CDS
TGAAGAGAAAGAAACATACA+AGG 0.631772 6_4:-5440042 Msa0973100:CDS
GAAGGTGGAGTTGTTAATGG+CGG 0.639574 6_4:-5442627 Msa0973100:CDS
ACCAAATGAAGCATGTTGAG+TGG 0.642539 6_4:+5441799 None:intergenic
GGAGAGGTTGAGCAGCGCTG+AGG 0.647893 6_4:-5440776 Msa0973100:CDS
CTACGAAGCTCTGAAAATGG+AGG 0.662448 6_4:-5442660 Msa0973100:intron
TCAGCACGTGATGAACCTAC+GGG 0.664578 6_4:+5443282 None:intergenic
GTAGCCAGCAATCACTGTGG+AGG 0.664908 6_4:-5439728 Msa0973100:CDS
ACATACAAGGAGAAATACAT+GGG 0.670004 6_4:-5440029 Msa0973100:CDS
TAGGATGCATCAAGATGATG+TGG 0.672188 6_4:+5438059 None:intergenic
AAATGACCATCAGTAGCGAG+TGG 0.680516 6_4:+5440128 None:intergenic
CATTACTGAGGTTTACAGTG+AGG 0.688498 6_4:-5442022 Msa0973100:intron
AGAACACAAGACCATTACTG+AGG 0.690770 6_4:-5442034 Msa0973100:CDS
TTTATCGGAATCATCCAAGG+TGG 0.715628 6_4:-5440108 Msa0973100:CDS
ATTGTTATACACATTGCGCG+CGG 0.726992 6_4:-5439783 Msa0973100:CDS
GTCGTAGCCAGCAATCACTG+TGG 0.732284 6_4:-5439731 Msa0973100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATAAATATTTTAATTTA+AGG + chr6_4:5438866-5438885 None:intergenic 0.0%
!! AAATATTTATAAAAAAAAAA+TGG - chr6_4:5438873-5438892 Msa0973100:intron 0.0%
!!! AATATTATCAATTTTGATAT+TGG - chr6_4:5439638-5439657 Msa0973100:intron 10.0%
!!! ATTTTCTTTAAAAAATGTTT+TGG - chr6_4:5440432-5440451 Msa0973100:CDS 10.0%
!!! ATCTATTTTTATTACATTTT+AGG - chr6_4:5440866-5440885 Msa0973100:intron 10.0%
!!! TAAATAACAAATTTTAGAAT+TGG + chr6_4:5441524-5441543 None:intergenic 10.0%
!! ACTATATGTTTATTATATTT+AGG + chr6_4:5444246-5444265 None:intergenic 10.0%
!!! AATTAATTTTCGTTTCAATT+TGG + chr6_4:5438265-5438284 None:intergenic 15.0%
!! ATTGAAACGAAAATTAATTA+TGG - chr6_4:5438266-5438285 Msa0973100:intron 15.0%
!! ATGAAACTTATAATTAGTTA+AGG - chr6_4:5438297-5438316 Msa0973100:intron 15.0%
!! ATCACTTATTTCAATAAAAA+GGG + chr6_4:5438474-5438493 None:intergenic 15.0%
!! AATCACTTATTTCAATAAAA+AGG + chr6_4:5438475-5438494 None:intergenic 15.0%
!! ATATATGAATTCAAATTCAA+CGG + chr6_4:5439239-5439258 None:intergenic 15.0%
!!! AATTTTTATTGAGTTTCATT+AGG - chr6_4:5439283-5439302 Msa0973100:intron 15.0%
!!! ATTTTTATTGAGTTTCATTA+GGG - chr6_4:5439284-5439303 Msa0973100:intron 15.0%
!!! TTTTTTACATAAAAATCTCT+AGG - chr6_4:5440483-5440502 Msa0973100:intron 15.0%
!! AAAGAATGATTTACAAAATA+TGG - chr6_4:5441682-5441701 Msa0973100:CDS 15.0%
!! AAAAATTGCAATGATATTTA+TGG + chr6_4:5442123-5442142 None:intergenic 15.0%
!!! TTTAGTTTTTTTAAGATATC+AGG - chr6_4:5442760-5442779 Msa0973100:intron 15.0%
!!! TTAGTTTTTTTAAGATATCA+GGG - chr6_4:5442761-5442780 Msa0973100:intron 15.0%
!! ATTTAAATGATATAATGATG+TGG - chr6_4:5442800-5442819 Msa0973100:intron 15.0%
!!! ATTATCTATCTATTTCTTTT+AGG + chr6_4:5443003-5443022 None:intergenic 15.0%
!! AAATAGATAGATAATACTTA+AGG - chr6_4:5443008-5443027 Msa0973100:intron 15.0%
!!! TGTATATACATATATTTTCT+GGG + chr6_4:5444019-5444038 None:intergenic 15.0%
!!! TTGTATATACATATATTTTC+TGG + chr6_4:5444020-5444039 None:intergenic 15.0%
!! ATAATAAAAGTCATGAAATA+TGG + chr6_4:5444163-5444182 None:intergenic 15.0%
!! ACTAATTATAAGTTTCATGT+TGG + chr6_4:5438295-5438314 None:intergenic 20.0%
!! TTGTTTATCTTGCTAAAAAT+TGG - chr6_4:5438657-5438676 Msa0973100:intron 20.0%
!! AAAATGAATGATATTGTCAT+GGG + chr6_4:5438806-5438825 None:intergenic 20.0%
!! AAAAATGAATGATATTGTCA+TGG + chr6_4:5438807-5438826 None:intergenic 20.0%
!!! AAAAAAAAATGGATTTGAAC+TGG - chr6_4:5438884-5438903 Msa0973100:intron 20.0%
!! TTATACTTTATGAATTTCAC+AGG + chr6_4:5438989-5439008 None:intergenic 20.0%
!!! CAATTGAATTGTTCATTTTT+TGG - chr6_4:5439047-5439066 Msa0973100:intron 20.0%
!!! ATTTTTTGTTTCACTGTTTT+TGG - chr6_4:5439191-5439210 Msa0973100:intron 20.0%
!! TAATGCAAATCAATATGATT+TGG + chr6_4:5439390-5439409 None:intergenic 20.0%
!! ATGTTGAAATTAACACAATT+TGG - chr6_4:5439449-5439468 Msa0973100:intron 20.0%
!!! TTGTTAGTTTGTTGATATTT+TGG - chr6_4:5439539-5439558 Msa0973100:intron 20.0%
!!! TCAAAATTGATAATATTCCA+GGG + chr6_4:5439635-5439654 None:intergenic 20.0%
!!! ATCAAAATTGATAATATTCC+AGG + chr6_4:5439636-5439655 None:intergenic 20.0%
!!! TTAACAGATTTCTTTTTGTT+AGG + chr6_4:5440733-5440752 None:intergenic 20.0%
!! GATTATAAATACACAATACT+TGG - chr6_4:5441129-5441148 Msa0973100:intron 20.0%
!!! ATGCATCTAAAATGATATAA+CGG + chr6_4:5441325-5441344 None:intergenic 20.0%
!! ATGCATAAAACTTAACTATT+AGG - chr6_4:5441339-5441358 Msa0973100:intron 20.0%
!! ATGAAATTAACATTCAACAT+TGG + chr6_4:5441366-5441385 None:intergenic 20.0%
!!! ATGCAATGTTATTTTTATCA+AGG - chr6_4:5441792-5441811 Msa0973100:CDS 20.0%
!! ACTTTCGAAATATATATTTC+AGG - chr6_4:5441893-5441912 Msa0973100:intron 20.0%
!!! TTCATTTTAAGACAAAACAA+TGG + chr6_4:5442518-5442537 None:intergenic 20.0%
!! TTAAATAAGTCAATTCAAAC+CGG - chr6_4:5443313-5443332 Msa0973100:intron 20.0%
!! ATACTTTAGTATCATGATAT+TGG - chr6_4:5443374-5443393 Msa0973100:intron 20.0%
!! TCATAAGCTATATTCTATTA+TGG - chr6_4:5443569-5443588 Msa0973100:intron 20.0%
!! TAAGAGCTAATAGATATATT+TGG - chr6_4:5443833-5443852 Msa0973100:intron 20.0%
!!! AGTTAGTTTTTCAATTCTAA+TGG - chr6_4:5443952-5443971 Msa0973100:intron 20.0%
!!! TAGTTGTTTATTTTCAAGAT+TGG + chr6_4:5444124-5444143 None:intergenic 20.0%
!!! CACTTTATTTGATAGTTTTA+CGG - chr6_4:5444186-5444205 Msa0973100:intron 20.0%
! TAATTCAAAAAAGGTTACCT+TGG + chr6_4:5438199-5438218 None:intergenic 25.0%
! CCATCTGTTTAATTCAAAAA+AGG + chr6_4:5438208-5438227 None:intergenic 25.0%
!!! CCTTTTTTGAATTAAACAGA+TGG - chr6_4:5438205-5438224 Msa0973100:intron 25.0%
! ACAGATGGAATGAATTTATT+TGG - chr6_4:5438220-5438239 Msa0973100:intron 25.0%
! GAATGAATTTATTTGGTAGA+CGG - chr6_4:5438227-5438246 Msa0973100:intron 25.0%
! TTGTTTGTCTTGCTAAAATT+TGG - chr6_4:5438573-5438592 Msa0973100:intron 25.0%
! CATTGAATTGAAAGTGAAAA+GGG + chr6_4:5439019-5439038 None:intergenic 25.0%
! ACATTGAATTGAAAGTGAAA+AGG + chr6_4:5439020-5439039 None:intergenic 25.0%
!!! TTTTTTGGATTTGATTTTGC+AGG - chr6_4:5439062-5439081 Msa0973100:intron 25.0%
!!! TTTTTGGATTTGATTTTGCA+GGG - chr6_4:5439063-5439082 Msa0973100:intron 25.0%
!!! TTTTTTAAAAACTCGGTATC+CGG - chr6_4:5439339-5439358 Msa0973100:intron 25.0%
! ACAAGAGTTCATAATATTCT+AGG + chr6_4:5439523-5439542 None:intergenic 25.0%
!! CAAATAAGATAAAGCATCAA+TGG + chr6_4:5439814-5439833 None:intergenic 25.0%
!! TGATGCTTTATCTTATTTGA+AGG - chr6_4:5439815-5439834 Msa0973100:intron 25.0%
!! TCATACTTTTCTTTTTGATC+CGG + chr6_4:5439858-5439877 None:intergenic 25.0%
! CATCACAAAACGTAAAAATA+AGG + chr6_4:5439932-5439951 None:intergenic 25.0%
! AACATTGTACTTACAATCAA+GGG - chr6_4:5439966-5439985 Msa0973100:CDS 25.0%
!! AATTCAACCTTTTTCTTTTG+AGG + chr6_4:5440148-5440167 None:intergenic 25.0%
! CAAAAAGAAATCTGTTAAGA+AGG - chr6_4:5440735-5440754 Msa0973100:CDS 25.0%
! TCATAAAGTAGTATGATTGT+CGG - chr6_4:5440963-5440982 Msa0973100:intron 25.0%
!!! CTTCTTAATTTTTTACGTGT+TGG + chr6_4:5440997-5441016 None:intergenic 25.0%
! ACACGTAAAAAATTAAGAAG+AGG - chr6_4:5440997-5441016 Msa0973100:intron 25.0%
!!! CAATTCACTTTTCATCTATT+TGG - chr6_4:5442197-5442216 Msa0973100:intron 25.0%
!!! TTTTTAAGCTTATGCAAAAC+AGG - chr6_4:5443140-5443159 Msa0973100:intron 25.0%
! TAGCTATTAGTATCCTATTT+AGG - chr6_4:5443484-5443503 Msa0973100:intron 25.0%
! ATTATGAATGTTTATGTCAG+TGG - chr6_4:5443621-5443640 Msa0973100:intron 25.0%
! TTATGAATGTTTATGTCAGT+GGG - chr6_4:5443622-5443641 Msa0973100:intron 25.0%
! CTATTTGAGAGAGTTTAATT+AGG + chr6_4:5443704-5443723 None:intergenic 25.0%
!! AGTACTAAGAGTACATTTAA+TGG - chr6_4:5444263-5444282 Msa0973100:intron 25.0%
AATGATGAAGAAGAAACTAG+GGG + chr6_4:5438383-5438402 None:intergenic 30.0%
GAATGATGAAGAAGAAACTA+GGG + chr6_4:5438384-5438403 None:intergenic 30.0%
TGAATGATGAAGAAGAAACT+AGG + chr6_4:5438385-5438404 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + chr6_4:5438765-5438784 None:intergenic 30.0%
TATTGCTATGTTATATGGGT+CGG + chr6_4:5438924-5438943 None:intergenic 30.0%
GGGTTATTGCTATGTTATAT+GGG + chr6_4:5438928-5438947 None:intergenic 30.0%
TTGAACACTATCAGTGAAAA+AGG + chr6_4:5439265-5439284 None:intergenic 30.0%
TCAACATTAGTCGTATTACT+TGG + chr6_4:5439436-5439455 None:intergenic 30.0%
TATGTCTTTGCATGTATTTG+TGG - chr6_4:5439594-5439613 Msa0973100:intron 30.0%
CAATGACAATTTCAGATATC+CGG + chr6_4:5439695-5439714 None:intergenic 30.0%
! GTTTTGTGATGAGTTTGAAA+CGG - chr6_4:5439941-5439960 Msa0973100:intron 30.0%
!! TTTTGTGATGAGTTTGAAAC+GGG - chr6_4:5439942-5439961 Msa0973100:intron 30.0%
GAACATTGTACTTACAATCA+AGG - chr6_4:5439965-5439984 Msa0973100:CDS 30.0%
!!! TGAAGATGCTATTAGTTTTG+TGG - chr6_4:5440168-5440187 Msa0973100:intron 30.0%
!!! GAAGATGCTATTAGTTTTGT+GGG - chr6_4:5440169-5440188 Msa0973100:intron 30.0%
CAAATTTACCAATTACAGCT+AGG + chr6_4:5440254-5440273 None:intergenic 30.0%
GCATGTTTACAAATCATTCT+TGG - chr6_4:5440304-5440323 Msa0973100:CDS 30.0%
!! ACAAAGTGCTGAAAGTATAT+AGG + chr6_4:5440400-5440419 None:intergenic 30.0%
ATCACTATGGTCCTTAAAAA+GGG + chr6_4:5440515-5440534 None:intergenic 30.0%
AATCACTATGGTCCTTAAAA+AGG + chr6_4:5440516-5440535 None:intergenic 30.0%
TAAGCTATCATACTATGCTT+TGG - chr6_4:5440819-5440838 Msa0973100:CDS 30.0%
GTTTAACAAGAGAACTATAG+TGG - chr6_4:5441236-5441255 Msa0973100:intron 30.0%
GAAACTTCAAGAAATCGAAA+TGG + chr6_4:5441426-5441445 None:intergenic 30.0%
CAATCAAGAAAGATGTTAAC+AGG + chr6_4:5441468-5441487 None:intergenic 30.0%
AAGTTTATGTGCGAAAGTTA+AGG - chr6_4:5441586-5441605 Msa0973100:intron 30.0%
TTCCATTGCTAAAATCATGA+AGG + chr6_4:5441655-5441674 None:intergenic 30.0%
! TGCTATGTAGTATTCCATTT+TGG - chr6_4:5441750-5441769 Msa0973100:CDS 30.0%
TGAGACCTATTTCAATGAAT+CGG + chr6_4:5441819-5441838 None:intergenic 30.0%
GAGCGAATTCAATGATTATT+TGG - chr6_4:5441950-5441969 Msa0973100:intron 30.0%
TGAAGAGAAAGAAACATACA+AGG - chr6_4:5442341-5442360 Msa0973100:intron 30.0%
AACATACAAGGAGAAATACA+TGG - chr6_4:5442353-5442372 Msa0973100:intron 30.0%
ACATACAAGGAGAAATACAT+GGG - chr6_4:5442354-5442373 Msa0973100:intron 30.0%
! AAATGTGTTGACATGCATTT+AGG - chr6_4:5442536-5442555 Msa0973100:CDS 30.0%
!! GACATTGTTATTTCTGATGT+AGG - chr6_4:5442565-5442584 Msa0973100:CDS 30.0%
GTAGACATCTATATAAGCTT+TGG - chr6_4:5442830-5442849 Msa0973100:intron 30.0%
TTGTAATCAACAGCTAATCA+AGG + chr6_4:5442885-5442904 None:intergenic 30.0%
!! AAGGCAAAAAGTACTTATGT+AGG + chr6_4:5443094-5443113 None:intergenic 30.0%
!!! ATATATTTTGAAGCTAGCCA+TGG + chr6_4:5443347-5443366 None:intergenic 30.0%
! ATTGGTCATTGTAGTCATTT+TGG - chr6_4:5443392-5443411 Msa0973100:intron 30.0%
!! TTGGTCATTGTAGTCATTTT+GGG - chr6_4:5443393-5443412 Msa0973100:intron 30.0%
AGAAATAGCTTCAATCCTTA+AGG - chr6_4:5443435-5443454 Msa0973100:intron 30.0%
TTATCCACACAATCCTAAAT+AGG + chr6_4:5443500-5443519 None:intergenic 30.0%
! TACCTTTTTCTTGTTGATGT+TGG - chr6_4:5443874-5443893 Msa0973100:intron 30.0%
! AAATATTAGCCTCACAATAG+TGG + chr6_4:5444101-5444120 None:intergenic 30.0%
TGACATGTCAAGATTAGGTT+GGG + chr6_4:5438163-5438182 None:intergenic 35.0%
TGAATTTATTTGGTAGACGG+AGG - chr6_4:5438230-5438249 Msa0973100:intron 35.0%
TTCTTCATCATTCACCAAAG+AGG - chr6_4:5438391-5438410 Msa0973100:intron 35.0%
AAAGAGAAAAACGAGCTAGA+GGG + chr6_4:5438451-5438470 None:intergenic 35.0%
AAGGTTTGCGATTTGAATCT+CGG + chr6_4:5438746-5438765 None:intergenic 35.0%
ATTGCTATGTTATATGGGTC+GGG + chr6_4:5438923-5438942 None:intergenic 35.0%
GGGGTTATTGCTATGTTATA+TGG + chr6_4:5438929-5438948 None:intergenic 35.0%
AGAAAACAACTTGAGAGAGA+GGG + chr6_4:5438949-5438968 None:intergenic 35.0%
CTTGTTCGTTGTTGATATTC+CGG - chr6_4:5439673-5439692 Msa0973100:intron 35.0%
AAAGTATGACATGTTCCTTC+AGG - chr6_4:5439869-5439888 Msa0973100:intron 35.0%
TGAAATCTTTCATGACCTGA+AGG + chr6_4:5439887-5439906 None:intergenic 35.0%
TCAGGTCATGAAAGATTTCA+AGG - chr6_4:5439887-5439906 Msa0973100:intron 35.0%
AGATTTCAAGGCTCAAAAGT+AGG - chr6_4:5439899-5439918 Msa0973100:intron 35.0%
! TTTGTGATGAGTTTGAAACG+GGG - chr6_4:5439943-5439962 Msa0973100:intron 35.0%
! GGTCACAGCAATTTGATTTA+TGG - chr6_4:5440067-5440086 Msa0973100:CDS 35.0%
! TTATCTCATGTCCTTTTGGT+AGG + chr6_4:5440105-5440124 None:intergenic 35.0%
!! AGTCTTATCTCATGTCCTTT+TGG + chr6_4:5440109-5440128 None:intergenic 35.0%
ACATGAGATAAGACTTGATG+AGG - chr6_4:5440114-5440133 Msa0973100:CDS 35.0%
TGAAGCTCCTCAAAAGAAAA+AGG - chr6_4:5440138-5440157 Msa0973100:intron 35.0%
!!! TAGTTTTGTGGGCAAGATAA+AGG - chr6_4:5440180-5440199 Msa0973100:intron 35.0%
TCAGTTACTAAGCGAGTTTA+CGG - chr6_4:5440216-5440235 Msa0973100:intron 35.0%
CGTTAATTCCTAGCTGTAAT+TGG - chr6_4:5440243-5440262 Msa0973100:intron 35.0%
! TGTAAACATGCTCGTCATTT+TGG + chr6_4:5440295-5440314 None:intergenic 35.0%
AGGTTTACAGTGAGGTAATA+TGG - chr6_4:5440369-5440388 Msa0973100:intron 35.0%
! GAAGGTTCTAGTGAATTATC+CGG + chr6_4:5440565-5440584 None:intergenic 35.0%
ACAGCATATTGAAAACGTGA+TGG + chr6_4:5440922-5440941 None:intergenic 35.0%
!! CACTATTGACTTCTAGAGAA+TGG + chr6_4:5441103-5441122 None:intergenic 35.0%
TAACAAGAGAACTATAGTGG+AGG - chr6_4:5441239-5441258 Msa0973100:intron 35.0%
GAAAGATGTTAACAGGACAA+AGG + chr6_4:5441461-5441480 None:intergenic 35.0%
ATACATGACTGACACGAATA+CGG + chr6_4:5441555-5441574 None:intergenic 35.0%
!! TGCCTTCATGATTTTAGCAA+TGG - chr6_4:5441650-5441669 Msa0973100:CDS 35.0%
TACAACTGAAAACGCCAAAA+TGG + chr6_4:5441767-5441786 None:intergenic 35.0%
AAGGTCCGATTCATTGAAAT+AGG - chr6_4:5441811-5441830 Msa0973100:CDS 35.0%
TGAAATAGGTCTCACTATCT+CGG - chr6_4:5441825-5441844 Msa0973100:CDS 35.0%
! TTTCAGGTGACTGATTTACT+TGG - chr6_4:5441909-5441928 Msa0973100:intron 35.0%
TCATTTATCGGAATCATCCA+AGG - chr6_4:5442272-5442291 Msa0973100:intron 35.0%
TTCCAAAATGAACATTCAGG+AGG + chr6_4:5442495-5442514 None:intergenic 35.0%
TGGTTCCAAAATGAACATTC+AGG + chr6_4:5442498-5442517 None:intergenic 35.0%
TGTATAACAATGTCCAGCTT+AGG + chr6_4:5442591-5442610 None:intergenic 35.0%
GGTTGCACATAAAGAAAAGA+AGG - chr6_4:5443029-5443048 Msa0973100:intron 35.0%
!! AAGTACTTTTTGCCTTGCTT+AGG - chr6_4:5443098-5443117 Msa0973100:intron 35.0%
!! AGTACTTTTTGCCTTGCTTA+GGG - chr6_4:5443099-5443118 Msa0973100:intron 35.0%
!! TGTAGTCATTTTGGGAATCT+AGG - chr6_4:5443401-5443420 Msa0973100:intron 35.0%
!! GTAGTCATTTTGGGAATCTA+GGG - chr6_4:5443402-5443421 Msa0973100:intron 35.0%
GCTTATGTCATTAGTCCTTA+AGG + chr6_4:5443453-5443472 None:intergenic 35.0%
! GTATCCTATTTAGGATTGTG+TGG - chr6_4:5443493-5443512 Msa0973100:intron 35.0%
TATGCAGCATAATTGATACC+TGG + chr6_4:5443790-5443809 None:intergenic 35.0%
TGCCAACATCAACAAGAAAA+AGG + chr6_4:5443879-5443898 None:intergenic 35.0%
! TTTTCTTGTTGATGTTGGCA+TGG - chr6_4:5443879-5443898 Msa0973100:intron 35.0%
AAACTATAGCCACTATTGTG+AGG - chr6_4:5444089-5444108 Msa0973100:intron 35.0%
! CTCGATCATTGATATTTTGC+AGG - chr6_4:5444290-5444309 Msa0973100:intron 35.0%
! TTTAAGGTGGCATAATCGAG+AGG + chr6_4:5438132-5438151 None:intergenic 40.0%
!! TCAAGATTAGGTTGGGGATA+GGG + chr6_4:5438156-5438175 None:intergenic 40.0%
! GACATGTCAAGATTAGGTTG+GGG + chr6_4:5438162-5438181 None:intergenic 40.0%
CTGACATGTCAAGATTAGGT+TGG + chr6_4:5438164-5438183 None:intergenic 40.0%
AAAGGTTACCTTGGCATATG+TGG + chr6_4:5438190-5438209 None:intergenic 40.0%
TGAAGAAGAAACTAGGGGTT+TGG + chr6_4:5438378-5438397 None:intergenic 40.0%
AAGAGAAAAACGAGCTAGAG+GGG + chr6_4:5438450-5438469 None:intergenic 40.0%
GAAAGAGAAAAACGAGCTAG+AGG + chr6_4:5438452-5438471 None:intergenic 40.0%
TATGCATTGTCCCTATCAAC+TGG - chr6_4:5438774-5438793 Msa0973100:intron 40.0%
ATGCATTGTCCCTATCAACT+GGG - chr6_4:5438775-5438794 Msa0973100:intron 40.0%
GAAAACAACTTGAGAGAGAG+GGG + chr6_4:5438948-5438967 None:intergenic 40.0%
GAGAAAACAACTTGAGAGAG+AGG + chr6_4:5438950-5438969 None:intergenic 40.0%
ATGAAATTCAAACGTCCCGT+AGG - chr6_4:5439086-5439105 Msa0973100:intron 40.0%
CAACGGTGCATGCAAAATTA+GGG + chr6_4:5439222-5439241 None:intergenic 40.0%
TCAACGGTGCATGCAAAATT+AGG + chr6_4:5439223-5439242 None:intergenic 40.0%
! ATCAATATGATTTGGCCCCT+CGG + chr6_4:5439382-5439401 None:intergenic 40.0%
TCTGCGTTTGCATGTATTTG+TGG - chr6_4:5439482-5439501 Msa0973100:intron 40.0%
! GGACTAAGATTTTTGAACCC+TGG - chr6_4:5439615-5439634 Msa0973100:intron 40.0%
!! TGTCTACGAAGCTCTGAAAA+TGG - chr6_4:5439720-5439739 Msa0973100:intron 40.0%
GGAAGTGAAAAACACGTTTC+CGG - chr6_4:5439836-5439855 Msa0973100:intron 40.0%
! AGGGATCTCAGTATTTTGTG+TGG - chr6_4:5439985-5440004 Msa0973100:CDS 40.0%
GCTGTCAAGGAACTATTCAA+AGG - chr6_4:5440046-5440065 Msa0973100:CDS 40.0%
TTCAACGCTTACCTACCAAA+AGG - chr6_4:5440091-5440110 Msa0973100:CDS 40.0%
AGAACACAAGACCATTACTG+AGG - chr6_4:5440349-5440368 Msa0973100:intron 40.0%
CTCACTGTAAACCTCAGTAA+TGG + chr6_4:5440363-5440382 None:intergenic 40.0%
CATTACTGAGGTTTACAGTG+AGG - chr6_4:5440361-5440380 Msa0973100:intron 40.0%
! CTAGGTTGCTACCCTTTTTA+AGG - chr6_4:5440501-5440520 Msa0973100:intron 40.0%
ACTCCTCAAGCAAATCACTA+TGG + chr6_4:5440528-5440547 None:intergenic 40.0%
GGAGTTCACTAGATTCTTAC+CGG - chr6_4:5440543-5440562 Msa0973100:intron 40.0%
AATGAAGCATGTTGAGTGGA+AGG + chr6_4:5440583-5440602 None:intergenic 40.0%
TCCACTCAACATGCTTCATT+TGG - chr6_4:5440583-5440602 Msa0973100:intron 40.0%
ACCAAATGAAGCATGTTGAG+TGG + chr6_4:5440587-5440606 None:intergenic 40.0%
CGAAACAATGAACTTGTGCA+AGG - chr6_4:5440648-5440667 Msa0973100:intron 40.0%
AACGTGAGATCAGGGATATA+AGG - chr6_4:5440680-5440699 Msa0973100:intron 40.0%
GTTAAGAAGGCTGAAGCTAA+TGG - chr6_4:5440748-5440767 Msa0973100:CDS 40.0%
TATGTGCGAAAGTTAAGGAG+AGG - chr6_4:5441591-5441610 Msa0973100:CDS 40.0%
!! GAAGGCACTTCAAGAATGTT+TGG + chr6_4:5441637-5441656 None:intergenic 40.0%
GTCAGCAAAGATACACGAAA+AGG + chr6_4:5441717-5441736 None:intergenic 40.0%
!! TCGTGTATCTTTGCTGACTT+TGG - chr6_4:5441719-5441738 Msa0973100:CDS 40.0%
TTACCTTGCGAGTTCTATTG+CGG - chr6_4:5441853-5441872 Msa0973100:CDS 40.0%
!! TTGGAGCGTTGTGAAAATAC+TGG - chr6_4:5441969-5441988 Msa0973100:intron 40.0%
! TCGAATTTTCTCATGCCTTG+AGG - chr6_4:5442027-5442046 Msa0973100:CDS 40.0%
ATACGCAGAATGAAACCTCA+AGG + chr6_4:5442045-5442064 None:intergenic 40.0%
CGCTACTGATGGTCATTTAT+CGG - chr6_4:5442260-5442279 Msa0973100:intron 40.0%
TTTATCGGAATCATCCAAGG+TGG - chr6_4:5442275-5442294 Msa0973100:intron 40.0%
GCTAAGGTCAAGTTCTTGAA+TGG + chr6_4:5442385-5442404 None:intergenic 40.0%
! AAGTTTTACCTGTCGTCAGT+AGG + chr6_4:5442444-5442463 None:intergenic 40.0%
AAAATGAACATTCAGGAGGC+AGG + chr6_4:5442491-5442510 None:intergenic 40.0%
! TGCCTCCTGAATGTTCATTT+TGG - chr6_4:5442490-5442509 Msa0973100:intron 40.0%
ATTGTTATACACATTGCGCG+CGG - chr6_4:5442600-5442619 Msa0973100:CDS 40.0%
! AAGCTTTGGTTGACATGTCA+TGG - chr6_4:5442844-5442863 Msa0973100:intron 40.0%
!! TAATCAAGGTTGATGTGGAC+CGG + chr6_4:5442871-5442890 None:intergenic 40.0%
!! ACAGCTAATCAAGGTTGATG+TGG + chr6_4:5442876-5442895 None:intergenic 40.0%
ATGGCAAAAAGGACGTGTTT+GGG + chr6_4:5443760-5443779 None:intergenic 40.0%
TATGGCAAAAAGGACGTGTT+TGG + chr6_4:5443761-5443780 None:intergenic 40.0%
! ACGTCCTTTTTGCCATAAGT+AGG - chr6_4:5443764-5443783 Msa0973100:intron 40.0%
ATTGATACCTGGCCTACTTA+TGG + chr6_4:5443779-5443798 None:intergenic 40.0%
TGATCCAACTCCAACAAAGA+GGG - chr6_4:5444050-5444069 Msa0973100:intron 40.0%
!!! TTGGGGATAGGGTTTTAAGG+TGG + chr6_4:5438145-5438164 None:intergenic 45.0%
! AGGTTGGGGATAGGGTTTTA+AGG + chr6_4:5438148-5438167 None:intergenic 45.0%
!! GTCAAGATTAGGTTGGGGAT+AGG + chr6_4:5438157-5438176 None:intergenic 45.0%
GACGCTGACATGTCAAGATT+AGG + chr6_4:5438168-5438187 None:intergenic 45.0%
GTGACGACTTACAAGAGAAG+TGG + chr6_4:5438356-5438375 None:intergenic 45.0%
CACCAAAGAGGACTGATCTA+TGG - chr6_4:5438403-5438422 Msa0973100:intron 45.0%
GACCATAGATCAGTCCTCTT+TGG + chr6_4:5438408-5438427 None:intergenic 45.0%
! TGGGCTTAACCCAGTTGATA+GGG + chr6_4:5438787-5438806 None:intergenic 45.0%
ATGGGCTTAACCCAGTTGAT+AGG + chr6_4:5438788-5438807 None:intergenic 45.0%
ATCAGCACGTGATGAACCTA+CGG + chr6_4:5439105-5439124 None:intergenic 45.0%
! TCTAGAACCGACTAATCCGA+GGG - chr6_4:5439363-5439382 Msa0973100:intron 45.0%
!! CTACGAAGCTCTGAAAATGG+AGG - chr6_4:5439723-5439742 Msa0973100:intron 45.0%
GGTGAAGGTGGAGTTGTTAA+TGG - chr6_4:5439753-5439772 Msa0973100:CDS 45.0%
GAAGGTGGAGTTGTTAATGG+CGG - chr6_4:5439756-5439775 Msa0973100:CDS 45.0%
TCAATGGTTGTCAGCTTCCT+GGG + chr6_4:5439798-5439817 None:intergenic 45.0%
ATCAATGGTTGTCAGCTTCC+TGG + chr6_4:5439799-5439818 None:intergenic 45.0%
TTTGTGTGGCGATTGTTTCC+AGG - chr6_4:5439999-5440018 Msa0973100:CDS 45.0%
!! GGACCATAGTGATTTGCTTG+AGG - chr6_4:5440522-5440541 Msa0973100:intron 45.0%
!! GAGTGTTGAACATCCTGATC+TGG - chr6_4:5440618-5440637 Msa0973100:intron 45.0%
TGAACTTGTGCAAGGAGCAA+AGG - chr6_4:5440656-5440675 Msa0973100:intron 45.0%
AGCAAAGGAAACGTGAGATC+AGG - chr6_4:5440671-5440690 Msa0973100:intron 45.0%
GCAAAGGAAACGTGAGATCA+GGG - chr6_4:5440672-5440691 Msa0973100:intron 45.0%
AAATGACCATCAGTAGCGAG+TGG + chr6_4:5442258-5442277 None:intergenic 45.0%
CAAGAACTTGACCTTAGCGT+CGG - chr6_4:5442387-5442406 Msa0973100:intron 45.0%
AACAATGTTTGCCGACGCTA+AGG + chr6_4:5442401-5442420 None:intergenic 45.0%
TTTCTGATGTAGGCCTAAGC+TGG - chr6_4:5442575-5442594 Msa0973100:CDS 45.0%
!! AATCAAGGTTGATGTGGACC+GGG + chr6_4:5442870-5442889 None:intergenic 45.0%
ATCCAAACAGACCCTAAGCA+AGG + chr6_4:5443113-5443132 None:intergenic 45.0%
CTGGCCTACTTATGGCAAAA+AGG + chr6_4:5443771-5443790 None:intergenic 45.0%
! CTTTTTGCCATAAGTAGGCC+AGG - chr6_4:5443769-5443788 Msa0973100:intron 45.0%
CTGATCCAACTCCAACAAAG+AGG - chr6_4:5444049-5444068 Msa0973100:intron 45.0%
GATCCAACTCCAACAAAGAG+GGG - chr6_4:5444051-5444070 Msa0973100:intron 45.0%
!!! TTTTTTTTTTTTTAAAAACT+CGG - chr6_4:5439332-5439351 Msa0973100:intron 5.0%
!!! TAAAAAAATTTATTTTGTTA+CGG + chr6_4:5443992-5444011 None:intergenic 5.0%
TCAGCACGTGATGAACCTAC+GGG + chr6_4:5439104-5439123 None:intergenic 50.0%
!! GGATTAGTCGGTTCTAGAGC+CGG + chr6_4:5439361-5439380 None:intergenic 50.0%
!! CTCTAGAACCGACTAATCCG+AGG - chr6_4:5439362-5439381 Msa0973100:intron 50.0%
CTAGAACCGACTAATCCGAG+GGG - chr6_4:5439364-5439383 Msa0973100:intron 50.0%
!! ATTTGGCCCCTCGGATTAGT+CGG + chr6_4:5439373-5439392 None:intergenic 50.0%
!! CGAAGCTCTGAAAATGGAGG+TGG - chr6_4:5439726-5439745 Msa0973100:CDS 50.0%
TCTGAAAATGGAGGTGGCAG+TGG - chr6_4:5439732-5439751 Msa0973100:CDS 50.0%
TGTGGCGATTGTTTCCAGGA+CGG - chr6_4:5440003-5440022 Msa0973100:CDS 50.0%
!! TGGTGTCATAGCTGCTGTCA+AGG - chr6_4:5440033-5440052 Msa0973100:CDS 50.0%
GTTTCGTCGTCATCCAGATC+AGG + chr6_4:5440634-5440653 None:intergenic 50.0%
AGACCGCAATAGAACTCGCA+AGG + chr6_4:5441859-5441878 None:intergenic 50.0%
ATCGGAATCATCCAAGGTGG+AGG - chr6_4:5442278-5442297 Msa0973100:intron 50.0%
CAAAGAACCCAAGCGTGAGA+TGG - chr6_4:5442311-5442330 Msa0973100:intron 50.0%
CATCCATCCATCTCACGCTT+GGG + chr6_4:5442321-5442340 None:intergenic 50.0%
ACATCCATCCATCTCACGCT+TGG + chr6_4:5442322-5442341 None:intergenic 50.0%
CGTCGGCAAACATTGTTCTC+CGG - chr6_4:5442404-5442423 Msa0973100:intron 50.0%
GTCGGCAAACATTGTTCTCC+GGG - chr6_4:5442405-5442424 Msa0973100:intron 50.0%
TGTCGTCAGTAGGTAGAAGC+TGG + chr6_4:5442434-5442453 None:intergenic 50.0%
AGCTTCTACCTACTGACGAC+AGG - chr6_4:5442433-5442452 Msa0973100:intron 50.0%
TTGGTTGACATGTCATGGCC+CGG - chr6_4:5442849-5442868 Msa0973100:intron 50.0%
TGCCTTGCTTAGGGTCTGTT+TGG - chr6_4:5443108-5443127 Msa0973100:intron 50.0%
GTCAATTCAAACCGGCCCAT+AGG - chr6_4:5443321-5443340 Msa0973100:intron 50.0%
TGAAGCTAGCCATGGCCTAT+GGG + chr6_4:5443339-5443358 None:intergenic 50.0%
TTGAAGCTAGCCATGGCCTA+TGG + chr6_4:5443340-5443359 None:intergenic 50.0%
TTGAGACTGCCCCTCTTTGT+TGG + chr6_4:5444063-5444082 None:intergenic 50.0%
GTCAGCGTCCACATATGCCA+AGG - chr6_4:5438179-5438198 Msa0973100:intron 55.0%
AATGGAGGTGGCAGTGGTGA+AGG - chr6_4:5439738-5439757 Msa0973100:CDS 55.0%
GGTGGAGTTGTTAATGGCGG+TGG - chr6_4:5439759-5439778 Msa0973100:CDS 55.0%
GGAGTTGTTAATGGCGGTGG+AGG - chr6_4:5439762-5439781 Msa0973100:CDS 55.0%
GTTTCCAGGACGGACACTCA+TGG - chr6_4:5440013-5440032 Msa0973100:CDS 55.0%
TCAGAGCCACTCGCTACTGA+TGG - chr6_4:5442249-5442268 Msa0973100:intron 55.0%
GAACCCAAGCGTGAGATGGA+TGG - chr6_4:5442315-5442334 Msa0973100:intron 55.0%
GTAGGTAGAAGCTGGTAGCC+CGG + chr6_4:5442426-5442445 None:intergenic 55.0%
GTCGTAGCCAGCAATCACTG+TGG - chr6_4:5442652-5442671 Msa0973100:CDS 55.0%
GTAGCCAGCAATCACTGTGG+AGG - chr6_4:5442655-5442674 Msa0973100:CDS 55.0%
ACTGCCTCCACAGTGATTGC+TGG + chr6_4:5442662-5442681 None:intergenic 55.0%
CTGCCCCTCTTTGTTGGAGT+TGG + chr6_4:5444057-5444076 None:intergenic 55.0%
! GTGGAGGTGCAAGTACTCCC+AGG - chr6_4:5439778-5439797 Msa0973100:CDS 60.0%
GACACCATGAGTGTCCGTCC+TGG + chr6_4:5440020-5440039 None:intergenic 60.0%
GTCTTCGTCGTCCTCCACCT+TGG + chr6_4:5442292-5442311 None:intergenic 60.0%
TGGAGGCAGTGCGCATGGAT+TGG - chr6_4:5442672-5442691 Msa0973100:intron 60.0%
TCAAACCGGCCCATAGGCCA+TGG - chr6_4:5443327-5443346 Msa0973100:intron 60.0%
GGAGGTGGCAGTGGTGAAGG+TGG - chr6_4:5439741-5439760 Msa0973100:CDS 65.0%
GGAGAGGTTGAGCAGCGCTG+AGG - chr6_4:5441607-5441626 Msa0973100:CDS 65.0%
GGTGACAAGTCAGCCGTCGC+AGG - chr6_4:5442621-5442640 Msa0973100:CDS 65.0%
TCAGCCGTCGCAGGTTGCAG+CGG - chr6_4:5442630-5442649 Msa0973100:CDS 65.0%
ACGACCGCTGCAACCTGCGA+CGG + chr6_4:5442637-5442656 None:intergenic 65.0%
CACTGTGGAGGCAGTGCGCA+TGG - chr6_4:5442667-5442686 Msa0973100:intron 65.0%
GCTAGCCATGGCCTATGGGC+CGG + chr6_4:5443335-5443354 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 5438071 5444334 5438071 ID=Msa0973100;Name=Msa0973100
chr6_4 mRNA 5438071 5444334 5438071 ID=Msa0973100-mRNA-1;Parent=Msa0973100;Name=Msa0973100-mRNA-1;_AED=0.22;_eAED=0.22;_QI=10|0.33|0.07|0.76|0.5|0.53|13|0|396
chr6_4 exon 5444327 5444334 5444327 ID=Msa0973100-mRNA-1:exon:2354;Parent=Msa0973100-mRNA-1
chr6_4 exon 5443279 5443321 5443279 ID=Msa0973100-mRNA-1:exon:2353;Parent=Msa0973100-mRNA-1
chr6_4 exon 5442515 5442674 5442515 ID=Msa0973100-mRNA-1:exon:2352;Parent=Msa0973100-mRNA-1
chr6_4 exon 5442023 5442121 5442023 ID=Msa0973100-mRNA-1:exon:2351;Parent=Msa0973100-mRNA-1
chr6_4 exon 5441588 5441900 5441588 ID=Msa0973100-mRNA-1:exon:2350;Parent=Msa0973100-mRNA-1
chr6_4 exon 5440702 5440838 5440702 ID=Msa0973100-mRNA-1:exon:2349;Parent=Msa0973100-mRNA-1
chr6_4 exon 5440415 5440490 5440415 ID=Msa0973100-mRNA-1:exon:2348;Parent=Msa0973100-mRNA-1
chr6_4 exon 5440299 5440328 5440299 ID=Msa0973100-mRNA-1:exon:2347;Parent=Msa0973100-mRNA-1
chr6_4 exon 5439951 5440152 5439951 ID=Msa0973100-mRNA-1:exon:2346;Parent=Msa0973100-mRNA-1
chr6_4 exon 5439726 5439818 5439726 ID=Msa0973100-mRNA-1:exon:2345;Parent=Msa0973100-mRNA-1
chr6_4 exon 5439617 5439623 5439617 ID=Msa0973100-mRNA-1:exon:2344;Parent=Msa0973100-mRNA-1
chr6_4 exon 5438198 5438204 5438198 ID=Msa0973100-mRNA-1:exon:2343;Parent=Msa0973100-mRNA-1
chr6_4 exon 5438071 5438093 5438071 ID=Msa0973100-mRNA-1:exon:2342;Parent=Msa0973100-mRNA-1
chr6_4 five_prime_UTR 5444327 5444334 5444327 ID=Msa0973100-mRNA-1:five_prime_utr;Parent=Msa0973100-mRNA-1
chr6_4 five_prime_UTR 5443320 5443321 5443320 ID=Msa0973100-mRNA-1:five_prime_utr;Parent=Msa0973100-mRNA-1
chr6_4 CDS 5443279 5443319 5443279 ID=Msa0973100-mRNA-1:cds;Parent=Msa0973100-mRNA-1
chr6_4 CDS 5442515 5442674 5442515 ID=Msa0973100-mRNA-1:cds;Parent=Msa0973100-mRNA-1
chr6_4 CDS 5442023 5442121 5442023 ID=Msa0973100-mRNA-1:cds;Parent=Msa0973100-mRNA-1
chr6_4 CDS 5441588 5441900 5441588 ID=Msa0973100-mRNA-1:cds;Parent=Msa0973100-mRNA-1
chr6_4 CDS 5440702 5440838 5440702 ID=Msa0973100-mRNA-1:cds;Parent=Msa0973100-mRNA-1
chr6_4 CDS 5440415 5440490 5440415 ID=Msa0973100-mRNA-1:cds;Parent=Msa0973100-mRNA-1
chr6_4 CDS 5440299 5440328 5440299 ID=Msa0973100-mRNA-1:cds;Parent=Msa0973100-mRNA-1
chr6_4 CDS 5439951 5440152 5439951 ID=Msa0973100-mRNA-1:cds;Parent=Msa0973100-mRNA-1
chr6_4 CDS 5439726 5439818 5439726 ID=Msa0973100-mRNA-1:cds;Parent=Msa0973100-mRNA-1
chr6_4 CDS 5439617 5439623 5439617 ID=Msa0973100-mRNA-1:cds;Parent=Msa0973100-mRNA-1
chr6_4 CDS 5438198 5438204 5438198 ID=Msa0973100-mRNA-1:cds;Parent=Msa0973100-mRNA-1
chr6_4 CDS 5438071 5438093 5438071 ID=Msa0973100-mRNA-1:cds;Parent=Msa0973100-mRNA-1
Gene Sequence

>Msa0973100

ATGAAATTCAAACGTCCCGTAGGTTCATCACGTGCTGATTCCTCTGAAAATGGAGGTGGCAGTGGTGAAGGTGGAGTTGTTAATGGCGGTGGAGGTGCAAGTACTCCCAGGAAGCTGACAACCATTGATGCTTTATCTTATTTGAAGGAAGTGAAAAACACGTTTCCGGATCAAAAAGAAAAGTATGACATGTTCCTTCAGCAACAATTCCAAAATGACGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGCAAAGAACACAAGACCATTACTGAGGTTTACAGTGAGGTTGCTACCCTTTTTAAGGACCATAGTGATTTGCTTGAGGAGTTCACTAGATTCTTACCGGATAATTCACTAGAACCTTCCACTCAACATGCTTCATTTGGTCATCGTGATCTGAGTGTTGAACATCCTGATCTGGATGACGACGAAACAATGAACTTGTGCAAGGAGCAAAGGAAACGTGAGATCAGGGATATAAGGAAACATGATTTGAACTCACTACGCTCTCCTAACAAAAAGAAATCTGTTAAGAAGGCTGAAGCTAATGGATTGTCTTCTGACTTAGCTTCTCATGATGATAAAGATGTGTTAAAGATCATGTATAGTCAAGCGTTAAGTTTATGTGCGAAAGTTAAGGAGAGGTTGAGCAGCGCTGAGGACTACCAAACATTCTTGAAGTGCCTTCATGATTTTAGCAATGGAATAATAAAAAAGAATGATTTACAAAATATGGTGACTGATTTACTTGGAAAGCATTCTGATCTCATGAGCGAATTCAATGATTATTTGGAGCGTTGTGAAAATACTGACGGGTTTCTTGCTGGTGTCGCGAGTGAAAAGCCACTCGCTACTGATGGTCATTTATCGGAATCATCCAAGGTGGAGGACGACGAAGACAAAGAACCCAAGCGTGAGATGGATGGATGTGAAGAGAAAGAAACATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGCGTCGGCAAACATTGTTCTCCGGGCTACCAGCTTCTACCTACTGACGACAGGCCTAAGCTGGACATTGTTATACACATTGCGCGCGGTGACAAGTCAGCCGTCGCAGGTTGCAGCGGTCGTAGCCAGCAATCACTGTGGAGGCAGGATTTATTTTACGGCTCCATTGAAGCCACATCATCT

Protein sequence

>Msa0973100

MKFKRPVGSSRADSSENGGGSGEGGVVNGGGGASTPRKLTTIDALSYLKEVKNTFPDQKEKYDMFLQQQFQNDEHVYKSFLDILNMYRKEHKTITEVYSEVATLFKDHSDLLEEFTRFLPDNSLEPSTQHASFGHRDLSVEHPDLDDDETMNLCKEQRKREIRDIRKHDLNSLRSPNKKKSVKKAEANGLSSDLASHDDKDVLKIMYSQALSLCAKVKERLSSAEDYQTFLKCLHDFSNGIIKKNDLQNMVTDLLGKHSDLMSEFNDYLERCENTDGFLAGVASEKPLATDGHLSESSKVEDDEDKEPKREMDGCEEKETYKEKYMGKSIQELDLSVGKHCSPGYQLLPTDDRPKLDIVIHIARGDKSAVAGCSGRSQQSLWRQDLFYGSIEATSS