Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964960 | A0A396HPT2 | 89.655 | 58 | 6 | 0 | 1 | 58 | 1 | 58 | 1.20e-26 | 103 |
| Msa0964960 | A0A396HPT2 | 98.413 | 63 | 1 | 0 | 64 | 126 | 1 | 63 | 3.66e-35 | 125 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081620 | Msa0964960 | 0.802926 | 4.449286e-49 | -8.615850e-47 |
| Msa0119440 | Msa0964960 | 0.819024 | 1.443340e-52 | -8.615850e-47 |
| Msa0764920 | Msa0964960 | 0.800128 | 1.666947e-48 | -8.615850e-47 |
| Msa0813260 | Msa0964960 | 0.845678 | 3.495491e-59 | -8.615850e-47 |
| Msa0139000 | Msa0964960 | 0.801717 | 7.891328e-49 | -8.615850e-47 |
| Msa0162690 | Msa0964960 | 0.839592 | 1.445300e-57 | -8.615850e-47 |
| Msa0173960 | Msa0964960 | 0.800917 | 1.150638e-48 | -8.615850e-47 |
| Msa0364790 | Msa0964960 | 0.803831 | 2.889075e-49 | -8.615850e-47 |
| Msa0418400 | Msa0964960 | 0.810623 | 1.051192e-50 | -8.615850e-47 |
| Msa0472770 | Msa0964960 | 0.807027 | 6.176648e-50 | -8.615850e-47 |
| Msa0305620 | Msa0964960 | 0.817540 | 3.127479e-52 | -8.615850e-47 |
| Msa0853810 | Msa0964960 | 0.847040 | 1.487268e-59 | -8.615850e-47 |
| Msa0964960 | Msa1225100 | 0.816990 | 4.158578e-52 | -8.615850e-47 |
| Msa0964960 | Msa1246700 | 0.807816 | 4.201019e-50 | -8.615850e-47 |
| Msa0964960 | Msa1285200 | 0.808894 | 2.474387e-50 | -8.615850e-47 |
| Msa0964960 | Msa1329870 | 0.815471 | 9.090467e-52 | -8.615850e-47 |
| Msa0964960 | Msa1376450 | 0.810546 | 1.092564e-50 | -8.615850e-47 |
| Msa0964960 | Msa1389760 | 0.803705 | 3.068176e-49 | -8.615850e-47 |
| Msa0964960 | Msa1391550 | 0.814623 | 1.402139e-51 | -8.615850e-47 |
| Msa0964960 | Msa1405220 | 0.817176 | 3.777883e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964960 | MtrunA17_Chr6g0485321 | 98.413 | 63 | 1 | 0 | 64 | 126 | 1 | 63 | 7.05e-39 | 125 |
| Msa0964960 | MtrunA17_Chr6g0485321 | 89.655 | 58 | 6 | 0 | 1 | 58 | 1 | 58 | 2.31e-30 | 103 |
| Msa0964960 | MtrunA17_Chr6g0485341 | 93.651 | 63 | 4 | 0 | 64 | 126 | 1 | 63 | 1.86e-36 | 119 |
| Msa0964960 | MtrunA17_Chr6g0485341 | 89.655 | 58 | 6 | 0 | 1 | 58 | 1 | 58 | 5.66e-32 | 107 |
| Msa0964960 | MtrunA17_Chr6g0485351 | 76.562 | 64 | 15 | 0 | 63 | 126 | 1 | 64 | 1.06e-29 | 102 |
| Msa0964960 | MtrunA17_Chr6g0485351 | 70.690 | 58 | 17 | 0 | 1 | 58 | 2 | 59 | 2.44e-23 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0964960 | AT3G61640.1 | 46.875 | 64 | 31 | 2 | 64 | 126 | 1 | 62 | 1.68e-11 | 56.2 |
| Msa0964960 | AT2G46330.1 | 50.909 | 55 | 25 | 1 | 72 | 126 | 10 | 62 | 1.88e-11 | 56.2 |
| Msa0964960 | AT5G53250.1 | 43.056 | 72 | 31 | 2 | 55 | 126 | 2 | 63 | 9.56e-11 | 53.9 |
Find 18 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAAGTGATGCTCAGATTT+TGG | 0.158444 | 6_3:+92186566 | Msa0964960:CDS |
| TTCTCTTATGTTGGTGGCGC+TGG | 0.343746 | 6_3:+92186605 | Msa0964960:CDS |
| AAAATCTGAGCATCACTTGT+AGG | 0.405205 | 6_3:-92186564 | None:intergenic |
| GTTCATGGCAATTGCTCACA+TGG | 0.420743 | 6_3:+92183754 | Msa0964960:CDS |
| TGCTTATTCTCTTATGTTGG+TGG | 0.427507 | 6_3:+92186599 | Msa0964960:CDS |
| AGACTCTGAGCATCACTTGT+AGG | 0.433902 | 6_3:-92183815 | None:intergenic |
| GTTCATGGCAATTTCTCACA+TGG | 0.474706 | 6_3:+92186503 | Msa0964960:CDS |
| AATTGCTTATTCTCTTATGT+TGG | 0.478265 | 6_3:+92186596 | Msa0964960:CDS |
| ATGAACAAAATAGTGAGAAG+TGG | 0.487628 | 6_3:-92183737 | None:intergenic |
| ATGAACAAAATAGTGAGAAG+TGG | 0.487628 | 6_3:-92186486 | None:intergenic |
| TGAACAAAATAGTGAGAAGT+GGG | 0.570433 | 6_3:-92183736 | None:intergenic |
| TGAACAAAATAGTGAGAAGT+GGG | 0.570433 | 6_3:-92186485 | None:intergenic |
| TCACTTGTAGGAGTAGGTGC+TGG | 0.575206 | 6_3:-92183803 | None:intergenic |
| TCACTTGTAGGAGTAGGTGC+TGG | 0.575206 | 6_3:-92186552 | None:intergenic |
| TGAGCATCACTTGTAGGAGT+AGG | 0.579336 | 6_3:-92186558 | None:intergenic |
| TTCATGGCAATTTCTCACAT+GGG | 0.580435 | 6_3:+92186504 | Msa0964960:CDS |
| TGAGCATCACTTGTAGGAGT+AGG | 0.595784 | 6_3:-92183809 | None:intergenic |
| TTCATGGCAATTGCTCACAT+GGG | 0.600618 | 6_3:+92183755 | Msa0964960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTCTTATAAAAATTT+AGG | - | chr6_3:92186059-92186078 | None:intergenic | 10.0% |
| !! | TTACATATACAAAAATATTC+TGG | - | chr6_3:92183923-92183942 | None:intergenic | 15.0% |
| !! | AACAAGAAAAAAATTGTAAT+AGG | + | chr6_3:92184120-92184139 | Msa0964960:intron | 15.0% |
| !! | CTGAAGAAAAAATAATAATA+AGG | + | chr6_3:92184171-92184190 | Msa0964960:intron | 15.0% |
| !! | AGAAAAAATAATAATAAGGT+CGG | + | chr6_3:92184175-92184194 | Msa0964960:intron | 15.0% |
| !! | TATTGATGAAAAAATCTTTA+AGG | + | chr6_3:92184904-92184923 | Msa0964960:intron | 15.0% |
| !!! | GTAAATTGTTTCTTATAATA+AGG | - | chr6_3:92185863-92185882 | None:intergenic | 15.0% |
| !! | GAAAAATATATCTTGAATTT+AGG | + | chr6_3:92185914-92185933 | Msa0964960:intron | 15.0% |
| !!! | AATTGCTTATTTTCTTATGT+TGG | + | chr6_3:92183847-92183866 | Msa0964960:CDS | 20.0% |
| !!! | TATTATTTTTTCTTCAGATG+TGG | - | chr6_3:92184168-92184187 | None:intergenic | 20.0% |
| !! | ATTAAAAAATGAACTCCTTT+AGG | + | chr6_3:92184226-92184245 | Msa0964960:intron | 20.0% |
| !!! | AATGATTGGCATTTTTTTTT+AGG | + | chr6_3:92184508-92184527 | Msa0964960:intron | 20.0% |
| !! | TGATTACAATCAAGTTTAAT+AGG | - | chr6_3:92185093-92185112 | None:intergenic | 20.0% |
| !!! | AAATTTTCACAAAAGTATGT+TGG | + | chr6_3:92185500-92185519 | Msa0964960:intron | 20.0% |
| !!! | GTTTAATTTCTAGAATTATG+TGG | + | chr6_3:92185638-92185657 | Msa0964960:intron | 20.0% |
| !! | TGCAAAATTAATATTTCCTT+CGG | + | chr6_3:92185836-92185855 | Msa0964960:intron | 20.0% |
| !! | AAATATATCTTGAATTTAGG+AGG | + | chr6_3:92185917-92185936 | Msa0964960:intron | 20.0% |
| !!! | AAAAATTTAGGATTAGAGAA+TGG | - | chr6_3:92186047-92186066 | None:intergenic | 20.0% |
| !! | TCTAGAAAATTATTGCATAT+AGG | - | chr6_3:92186105-92186124 | None:intergenic | 20.0% |
| !! | ATTTGAATAACTTAACTATG+AGG | - | chr6_3:92186401-92186420 | None:intergenic | 20.0% |
| !!! | ATTGTCTTCATAATTTTCTT+GGG | - | chr6_3:92186450-92186469 | None:intergenic | 20.0% |
| !! | TGTTATTTGTCCTATGATTA+TGG | + | chr6_3:92184327-92184346 | Msa0964960:intron | 25.0% |
| ! | GTTATTTGTCCTATGATTAT+GGG | + | chr6_3:92184328-92184347 | Msa0964960:intron | 25.0% |
| ! | GAGATAATTGCTTTAATAAC+TGG | - | chr6_3:92184627-92184646 | None:intergenic | 25.0% |
| !! | GAAAAAATCTTTAAGGAACA+AGG | + | chr6_3:92184911-92184930 | Msa0964960:intron | 25.0% |
| ! | ACATAAATGCAAATACAACT+TGG | + | chr6_3:92184978-92184997 | Msa0964960:intron | 25.0% |
| ! | TAAACTTGATTGTAATCAAG+TGG | + | chr6_3:92185095-92185114 | Msa0964960:intron | 25.0% |
| !! | AATTGATTCAAACATGGAAT+TGG | - | chr6_3:92185148-92185167 | None:intergenic | 25.0% |
| !! | ATCAAGAATTGATTCAAACA+TGG | - | chr6_3:92185154-92185173 | None:intergenic | 25.0% |
| !!! | CGACACTTATTTTAAAGTTT+TGG | - | chr6_3:92185203-92185222 | None:intergenic | 25.0% |
| ! | ATTTGTGCATTTACAATTTG+CGG | + | chr6_3:92185383-92185402 | Msa0964960:intron | 25.0% |
| !!! | TTTGGTAATGAATTGTAGAA+TGG | + | chr6_3:92185563-92185582 | Msa0964960:intron | 25.0% |
| !!! | TTGGTAATGAATTGTAGAAT+GGG | + | chr6_3:92185564-92185583 | Msa0964960:intron | 25.0% |
| ! | TCTAGAAATTAAACCTTTGT+GGG | - | chr6_3:92185632-92185651 | None:intergenic | 25.0% |
| !! | TTCTAGAAATTAAACCTTTG+TGG | - | chr6_3:92185633-92185652 | None:intergenic | 25.0% |
| !!! | TAATTTCTAGAATTATGTGG+TGG | + | chr6_3:92185641-92185660 | Msa0964960:intron | 25.0% |
| ! | ATAGGAGTAATTTCTGTTTA+AGG | - | chr6_3:92186087-92186106 | None:intergenic | 25.0% |
| ! | TATTTATAGGTAGAGAAAGA+AGG | - | chr6_3:92186295-92186314 | None:intergenic | 25.0% |
| ! | AAGGGAAAAGTGATATTTAT+AGG | - | chr6_3:92186308-92186327 | None:intergenic | 25.0% |
| !! | TTGATATGAGTTTGAGTTAA+GGG | - | chr6_3:92186326-92186345 | None:intergenic | 25.0% |
| !! | TTTGATATGAGTTTGAGTTA+AGG | - | chr6_3:92186327-92186346 | None:intergenic | 25.0% |
| ! | TGAGAAAATCTTGAAGTTAA+AGG | - | chr6_3:92186375-92186394 | None:intergenic | 25.0% |
| !! | CATTGTCTTCATAATTTTCT+TGG | - | chr6_3:92186451-92186470 | None:intergenic | 25.0% |
| ! | AATTGCTTATTCTCTTATGT+TGG | + | chr6_3:92186596-92186615 | Msa0964960:CDS | 25.0% |
| TGAACAAAATAGTGAGAAGT+GGG | - | chr6_3:92183739-92183758 | None:intergenic | 30.0% | |
| ATGAACAAAATAGTGAGAAG+TGG | - | chr6_3:92183740-92183759 | None:intergenic | 30.0% | |
| ! | ACTTCTCACTATTTTGTTCA+TGG | + | chr6_3:92183739-92183758 | Msa0964960:CDS | 30.0% |
| !! | TGCTTATTTTCTTATGTTGG+TGG | + | chr6_3:92183850-92183869 | Msa0964960:CDS | 30.0% |
| !!! | GCTTCATTGATTTTTGTAGA+AGG | + | chr6_3:92183892-92183911 | Msa0964960:intron | 30.0% |
| !! | ATAGGTTATTTTGTTCTGAG+TGG | + | chr6_3:92184138-92184157 | Msa0964960:intron | 30.0% |
| !!! | ATTTTTTCTTCAGATGTGGT+AGG | - | chr6_3:92184164-92184183 | None:intergenic | 30.0% |
| CATCATGTTTAATAGTGATG+TGG | + | chr6_3:92184424-92184443 | Msa0964960:intron | 30.0% | |
| AGAAGTCGTATGAAAATGAT+TGG | + | chr6_3:92184494-92184513 | Msa0964960:intron | 30.0% | |
| !!! | TTTTTTTAGGTGTGTTGAGT+TGG | + | chr6_3:92184521-92184540 | Msa0964960:intron | 30.0% |
| ACGAAAATAATGAGTTCTTG+AGG | - | chr6_3:92184649-92184668 | None:intergenic | 30.0% | |
| ! | TTATTTTCGTCATGACTTTG+TGG | + | chr6_3:92184659-92184678 | Msa0964960:intron | 30.0% |
| TTTGGAAGAGAATGAATTGA+TGG | + | chr6_3:92184686-92184705 | Msa0964960:intron | 30.0% | |
| TTTAAGGAACAAGGTTGTTA+AGG | + | chr6_3:92184920-92184939 | Msa0964960:intron | 30.0% | |
| ! | AATAAGAGGCTTGGTAATTT+GGG | + | chr6_3:92185054-92185073 | Msa0964960:intron | 30.0% |
| AAATCACCTTGAAAAGAATG+AGG | - | chr6_3:92185467-92185486 | None:intergenic | 30.0% | |
| AAGTTAATGTTGTTGAGTCT+TGG | + | chr6_3:92185526-92185545 | Msa0964960:intron | 30.0% | |
| TAATGAATTGTAGAATGGGT+AGG | + | chr6_3:92185568-92185587 | Msa0964960:intron | 30.0% | |
| GAAGACCAAGATACAAAAAA+GGG | - | chr6_3:92185596-92185615 | None:intergenic | 30.0% | |
| TGTATGAAAAGTAGACTGAT+TGG | + | chr6_3:92185666-92185685 | Msa0964960:intron | 30.0% | |
| GTATGAAAAGTAGACTGATT+GGG | + | chr6_3:92185667-92185686 | Msa0964960:intron | 30.0% | |
| TTTCTTATAATAAGGACCGA+AGG | - | chr6_3:92185855-92185874 | None:intergenic | 30.0% | |
| ! | TATGTTTCTGACTTTAGATC+AGG | + | chr6_3:92186018-92186037 | Msa0964960:intron | 30.0% |
| ! | ATGTTTCTGACTTTAGATCA+GGG | + | chr6_3:92186019-92186038 | Msa0964960:intron | 30.0% |
| AAAGAAGGAAGAGTAAAATG+TGG | - | chr6_3:92186280-92186299 | None:intergenic | 30.0% | |
| TGAATAACTTAACTATGAGG+AGG | - | chr6_3:92186398-92186417 | None:intergenic | 30.0% | |
| TGAACAAAATAGTGAGAAGT+GGG | - | chr6_3:92183739-92183758 | None:intergenic | 30.0% | |
| ATGAACAAAATAGTGAGAAG+TGG | - | chr6_3:92183740-92183759 | None:intergenic | 30.0% | |
| ! | ACTTCTCACTATTTTGTTCA+TGG | + | chr6_3:92183739-92183758 | Msa0964960:CDS | 30.0% |
| !! | CATTCTAGAGTTATGTGATG+TGG | - | chr6_3:92184201-92184220 | None:intergenic | 35.0% |
| ! | CACATCACATAACTCTAGAA+TGG | + | chr6_3:92184199-92184218 | Msa0964960:intron | 35.0% |
| AAATGAACTCCTTTAGGTCT+TGG | + | chr6_3:92184232-92184251 | Msa0964960:intron | 35.0% | |
| TTGTCCTATGATTATGGGAA+CGG | + | chr6_3:92184333-92184352 | Msa0964960:intron | 35.0% | |
| GGTCAATTATATCGTTTACC+AGG | - | chr6_3:92184366-92184385 | None:intergenic | 35.0% | |
| TGCAAATACAACTTGGTACA+AGG | + | chr6_3:92184985-92185004 | Msa0964960:intron | 35.0% | |
| GCAAATACAACTTGGTACAA+GGG | + | chr6_3:92184986-92185005 | Msa0964960:intron | 35.0% | |
| ! | CAATAAGAGGCTTGGTAATT+TGG | + | chr6_3:92185053-92185072 | Msa0964960:intron | 35.0% |
| GCTTGTTCATTTGTAAGCTA+AGG | + | chr6_3:92185242-92185261 | Msa0964960:intron | 35.0% | |
| !!! | AGGATCCCTTTTTTGTATCT+TGG | + | chr6_3:92185588-92185607 | Msa0964960:intron | 35.0% |
| GGAAGACCAAGATACAAAAA+AGG | - | chr6_3:92185597-92185616 | None:intergenic | 35.0% | |
| ! | TTGTATCTTGGTCTTCCTAT+TGG | + | chr6_3:92185600-92185619 | Msa0964960:intron | 35.0% |
| !! | ATCTTTGGTGTTAGAGTTTG+TGG | + | chr6_3:92185695-92185714 | Msa0964960:intron | 35.0% |
| !! | TGGTGTTTGGTTTGATGTTA+TGG | + | chr6_3:92185726-92185745 | Msa0964960:intron | 35.0% |
| TGATGTTATGGTAGAGTCTA+TGG | + | chr6_3:92185738-92185757 | Msa0964960:intron | 35.0% | |
| ! | AACAAAGAGCTATTTCGACA+CGG | - | chr6_3:92186237-92186256 | None:intergenic | 35.0% |
| TTCATGGCAATTTCTCACAT+GGG | + | chr6_3:92186504-92186523 | Msa0964960:CDS | 35.0% | |
| AAAATCTGAGCATCACTTGT+AGG | - | chr6_3:92186567-92186586 | None:intergenic | 35.0% | |
| ! | TACAAGTGATGCTCAGATTT+TGG | + | chr6_3:92186566-92186585 | Msa0964960:CDS | 35.0% |
| TGCTTATTCTCTTATGTTGG+TGG | + | chr6_3:92186599-92186618 | Msa0964960:CDS | 35.0% | |
| TTCATGGCAATTGCTCACAT+GGG | + | chr6_3:92183755-92183774 | Msa0964960:CDS | 40.0% | |
| ! | GAACGTTTGAAAGCACAAGA+AGG | - | chr6_3:92183993-92184012 | None:intergenic | 40.0% |
| !! | CTTGGATTGGTGATGAAGAA+CGG | + | chr6_3:92184299-92184318 | Msa0964960:intron | 40.0% |
| !! | TTGGATTGGTGATGAAGAAC+GGG | + | chr6_3:92184300-92184319 | Msa0964960:intron | 40.0% |
| TTCTCCGTTCCCATAATCAT+AGG | - | chr6_3:92184340-92184359 | None:intergenic | 40.0% | |
| TTGACCAAAATACACATGCG+TGG | + | chr6_3:92184380-92184399 | Msa0964960:intron | 40.0% | |
| ! | TCTTCCACGCATGTGTATTT+TGG | - | chr6_3:92184387-92184406 | None:intergenic | 40.0% |
| TGATGTGGAAGACAAACTCA+AGG | + | chr6_3:92184439-92184458 | Msa0964960:intron | 40.0% | |
| TCATGTAACGATCACTACAC+TGG | - | chr6_3:92184468-92184487 | None:intergenic | 40.0% | |
| AGGTCTTTCGCATATTATCC+AGG | + | chr6_3:92184563-92184582 | Msa0964960:intron | 40.0% | |
| GCATATTATCCAGGAGAACT+TGG | + | chr6_3:92184572-92184591 | Msa0964960:intron | 40.0% | |
| GAGAACTTGGAAACTAAGGA+TGG | + | chr6_3:92184585-92184604 | Msa0964960:intron | 40.0% | |
| TCATGACTTTGTGGTGCATT+TGG | + | chr6_3:92184668-92184687 | Msa0964960:intron | 40.0% | |
| TCAACGCATCCCAATTCAAA+TGG | + | chr6_3:92184736-92184755 | Msa0964960:intron | 40.0% | |
| CATCTCACGCCATTTGAATT+GGG | - | chr6_3:92184748-92184767 | None:intergenic | 40.0% | |
| ACATCTCACGCCATTTGAAT+TGG | - | chr6_3:92184749-92184768 | None:intergenic | 40.0% | |
| AAGAAAGAGCGAAGAGAACT+AGG | + | chr6_3:92184796-92184815 | Msa0964960:intron | 40.0% | |
| ACGATAACAAGTAAAGACCG+AGG | + | chr6_3:92184839-92184858 | Msa0964960:intron | 40.0% | |
| GTGTGTAGATGTGTCTTAGA+GGG | + | chr6_3:92184942-92184961 | Msa0964960:intron | 40.0% | |
| TGTGTAGATGTGTCTTAGAG+GGG | + | chr6_3:92184943-92184962 | Msa0964960:intron | 40.0% | |
| GGGTTAAAGGAAGCAATAAG+AGG | + | chr6_3:92185040-92185059 | Msa0964960:intron | 40.0% | |
| AAAGGAAGCAATAAGAGGCT+TGG | + | chr6_3:92185045-92185064 | Msa0964960:intron | 40.0% | |
| TGTGCATTTACAATTTGCGG+AGG | + | chr6_3:92185386-92185405 | Msa0964960:intron | 40.0% | |
| !!! | TGCGGAGGACACTTTTTTAT+TGG | + | chr6_3:92185401-92185420 | Msa0964960:intron | 40.0% |
| ! | AGCAGTCCTCATTCTTTTCA+AGG | + | chr6_3:92185458-92185477 | Msa0964960:intron | 40.0% |
| CAAGGTGATTTCAGAACTGA+AGG | + | chr6_3:92185476-92185495 | Msa0964960:intron | 40.0% | |
| TGTTGAGTCTTGGATGTTAG+AGG | + | chr6_3:92185536-92185555 | Msa0964960:intron | 40.0% | |
| GTTGAGTCTTGGATGTTAGA+GGG | + | chr6_3:92185537-92185556 | Msa0964960:intron | 40.0% | |
| TTGGATGTTAGAGGGATCTT+TGG | + | chr6_3:92185545-92185564 | Msa0964960:intron | 40.0% | |
| ! | TATCTTGGTCTTCCTATTGG+TGG | + | chr6_3:92185603-92185622 | Msa0964960:intron | 40.0% |
| TGAAAAGTAGACTGATTGGG+TGG | + | chr6_3:92185670-92185689 | Msa0964960:intron | 40.0% | |
| TAGAGTTTGTGGCACATCTT+TGG | + | chr6_3:92185706-92185725 | Msa0964960:intron | 40.0% | |
| ! | ATTCCGCTAATGTCGTTTGA+AGG | + | chr6_3:92185952-92185971 | Msa0964960:intron | 40.0% |
| TCTCCTTCAAACGACATTAG+CGG | - | chr6_3:92185958-92185977 | None:intergenic | 40.0% | |
| GTGGCGTCTAAGAAATTTCA+AGG | - | chr6_3:92186261-92186280 | None:intergenic | 40.0% | |
| GTTCATGGCAATTTCTCACA+TGG | + | chr6_3:92186503-92186522 | Msa0964960:CDS | 40.0% | |
| ! | GATGCTCAGATTTTGGATCA+AGG | + | chr6_3:92186573-92186592 | Msa0964960:CDS | 40.0% |
| GTTCATGGCAATTGCTCACA+TGG | + | chr6_3:92183754-92183773 | Msa0964960:CDS | 45.0% | |
| TGAGCATCACTTGTAGGAGT+AGG | - | chr6_3:92183812-92183831 | None:intergenic | 45.0% | |
| AGACTCTGAGCATCACTTGT+AGG | - | chr6_3:92183818-92183837 | None:intergenic | 45.0% | |
| !!! | TTTTCTTATGTTGGTGGCGC+TGG | + | chr6_3:92183856-92183875 | Msa0964960:CDS | 45.0% |
| GAACTCCTTTAGGTCTTGGA+TGG | + | chr6_3:92184236-92184255 | Msa0964960:intron | 45.0% | |
| AAACGCCATCCAAGACCTAA+AGG | - | chr6_3:92184244-92184263 | None:intergenic | 45.0% | |
| TTAGGTCTTGGATGGCGTTT+AGG | + | chr6_3:92184244-92184263 | Msa0964960:intron | 45.0% | |
| TAGGTCTTGGATGGCGTTTA+GGG | + | chr6_3:92184245-92184264 | Msa0964960:intron | 45.0% | |
| CGTTCTTCATCACCAATCCA+AGG | - | chr6_3:92184301-92184320 | None:intergenic | 45.0% | |
| GAAGCAATGTGAGAAGTAGC+AGG | + | chr6_3:92184543-92184562 | Msa0964960:intron | 45.0% | |
| CCTTAGTTTCCAAGTTCTCC+TGG | - | chr6_3:92184584-92184603 | None:intergenic | 45.0% | |
| CCAGGAGAACTTGGAAACTA+AGG | + | chr6_3:92184581-92184600 | Msa0964960:intron | 45.0% | |
| CTCTTCGCTCTTTCTTGTCA+AGG | - | chr6_3:92184792-92184811 | None:intergenic | 45.0% | |
| TATCCCTTTGCCGAACTTCT+TGG | - | chr6_3:92184872-92184891 | None:intergenic | 45.0% | |
| AAGAAGTTCGGCAAAGGGAT+AGG | + | chr6_3:92184871-92184890 | Msa0964960:intron | 45.0% | |
| GGTGTGTAGATGTGTCTTAG+AGG | + | chr6_3:92184941-92184960 | Msa0964960:intron | 45.0% | |
| ACCTCATGAGACTGAAGCAA+TGG | + | chr6_3:92185018-92185037 | Msa0964960:intron | 45.0% | |
| CCTCATGAGACTGAAGCAAT+GGG | + | chr6_3:92185019-92185038 | Msa0964960:intron | 45.0% | |
| CTCATGAGACTGAAGCAATG+GGG | + | chr6_3:92185020-92185039 | Msa0964960:intron | 45.0% | |
| GACTGAAGCAATGGGGTTAA+AGG | + | chr6_3:92185027-92185046 | Msa0964960:intron | 45.0% | |
| ACTGATTGGGTGGACATCTT+TGG | + | chr6_3:92185680-92185699 | Msa0964960:intron | 45.0% | |
| !! | TGTGGCACATCTTTGGTGTT+TGG | + | chr6_3:92185713-92185732 | Msa0964960:intron | 45.0% |
| TAGAGTCTATGGCAGATCTC+TGG | + | chr6_3:92185749-92185768 | Msa0964960:intron | 45.0% | |
| TATGGCAGATCTCTGGTGTT+TGG | + | chr6_3:92185756-92185775 | Msa0964960:intron | 45.0% | |
| ATCTCTGGTGTTTGGTCCAA+CGG | + | chr6_3:92185764-92185783 | Msa0964960:intron | 45.0% | |
| ! | AAGAGCTATTTCGACACGGT+TGG | - | chr6_3:92186233-92186252 | None:intergenic | 45.0% |
| TGAGCATCACTTGTAGGAGT+AGG | - | chr6_3:92183812-92183831 | None:intergenic | 45.0% | |
| TCACTTGTAGGAGTAGGTGC+TGG | - | chr6_3:92183806-92183825 | None:intergenic | 50.0% | |
| TCCAAACGCGTGAGATTGCT+AGG | + | chr6_3:92184036-92184055 | Msa0964960:intron | 50.0% | |
| ACCTAGCAATCTCACGCGTT+TGG | - | chr6_3:92184040-92184059 | None:intergenic | 50.0% | |
| AGGTCTTGGATGGCGTTTAG+GGG | + | chr6_3:92184246-92184265 | Msa0964960:intron | 50.0% | |
| TTGGATGGCGTTTAGGGGAT+AGG | + | chr6_3:92184251-92184270 | Msa0964960:intron | 50.0% | |
| TAGGGGATAGGTCGAAGACA+AGG | + | chr6_3:92184263-92184282 | Msa0964960:intron | 50.0% | |
| AGGGGATAGGTCGAAGACAA+GGG | + | chr6_3:92184264-92184283 | Msa0964960:intron | 50.0% | |
| TATGGGAACGGAGAACTTCC+TGG | + | chr6_3:92184345-92184364 | Msa0964960:intron | 50.0% | |
| CAAGTAAAGACCGAGGCAGA+TGG | + | chr6_3:92184846-92184865 | Msa0964960:intron | 50.0% | |
| AACTTCTTGGCCATCTGCCT+CGG | - | chr6_3:92184859-92184878 | None:intergenic | 50.0% | |
| AGGCAGATGGCCAAGAAGTT+CGG | + | chr6_3:92184859-92184878 | Msa0964960:intron | 50.0% | |
| ATGGCCAAGAAGTTCGGCAA+AGG | + | chr6_3:92184865-92184884 | Msa0964960:intron | 50.0% | |
| TGGCCAAGAAGTTCGGCAAA+GGG | + | chr6_3:92184866-92184885 | Msa0964960:intron | 50.0% | |
| GCTTCAGTCTCATGAGGTTG+TGG | - | chr6_3:92185016-92185035 | None:intergenic | 50.0% | |
| CCCATTGCTTCAGTCTCATG+AGG | - | chr6_3:92185022-92185041 | None:intergenic | 50.0% | |
| CTTTGTGGGTCTCCACCAAT+AGG | - | chr6_3:92185618-92185637 | None:intergenic | 50.0% | |
| CTATTGGTGGAGACCCACAA+AGG | + | chr6_3:92185616-92185635 | Msa0964960:intron | 50.0% | |
| TCTCTGGTGTTTGGTCCAAC+GGG | + | chr6_3:92185765-92185784 | Msa0964960:intron | 50.0% | |
| ATCAATAGAACCCACCCCGT+TGG | - | chr6_3:92185783-92185802 | None:intergenic | 50.0% | |
| !! | TTGGTGCGACTCGTTGACTT+GGG | - | chr6_3:92186214-92186233 | None:intergenic | 50.0% |
| TCACTTGTAGGAGTAGGTGC+TGG | - | chr6_3:92183806-92183825 | None:intergenic | 50.0% | |
| !! | TTCTCTTATGTTGGTGGCGC+TGG | + | chr6_3:92186605-92186624 | Msa0964960:CDS | 50.0% |
| ATAGGTCGAAGACAAGGGCG+TGG | + | chr6_3:92184269-92184288 | Msa0964960:intron | 55.0% | |
| GCGTGGCATGATCCTTGGAT+TGG | + | chr6_3:92184286-92184305 | Msa0964960:intron | 55.0% | |
| CTCTGGTGTTTGGTCCAACG+GGG | + | chr6_3:92185766-92185785 | Msa0964960:intron | 55.0% | |
| ! | GTTGGTGCGACTCGTTGACT+TGG | - | chr6_3:92186215-92186234 | None:intergenic | 55.0% |
| ! | CAAGGGCGTGGCATGATCCT+TGG | + | chr6_3:92184281-92184300 | Msa0964960:intron | 60.0% |
| TGGTGTTTGGTCCAACGGGG+TGG | + | chr6_3:92185769-92185788 | Msa0964960:intron | 60.0% | |
| GGTGTTTGGTCCAACGGGGT+GGG | + | chr6_3:92185770-92185789 | Msa0964960:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 92183710 | 92186650 | 92183710 | ID=Msa0964960;Name=Msa0964960 |
| chr6_3 | mRNA | 92183710 | 92186650 | 92183710 | ID=Msa0964960-mRNA-1;Parent=Msa0964960;Name=Msa0964960-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|0|0.5|2|0|126 |
| chr6_3 | exon | 92183710 | 92183877 | 92183710 | ID=Msa0964960-mRNA-1:exon:16728;Parent=Msa0964960-mRNA-1 |
| chr6_3 | exon | 92186438 | 92186650 | 92186438 | ID=Msa0964960-mRNA-1:exon:16729;Parent=Msa0964960-mRNA-1 |
| chr6_3 | CDS | 92183710 | 92183877 | 92183710 | ID=Msa0964960-mRNA-1:cds;Parent=Msa0964960-mRNA-1 |
| chr6_3 | CDS | 92186438 | 92186650 | 92186438 | ID=Msa0964960-mRNA-1:cds;Parent=Msa0964960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
