AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139000 MtrunA17_Chr1g0194191 97.949 390 8 0 1 390 1 390 0.0 785
Msa0139000 MtrunA17_Chr2g0293811 56.589 387 149 3 1 387 1 368 1.21e-152 435
Msa0139000 MtrunA17_Chr5g0407161 50.943 318 134 3 73 386 79 378 3.58e-110 328
Msa0139000 MtrunA17_Chr3g0144111 52.333 300 96 4 92 385 1 259 4.47e-104 308
Msa0139000 MtrunA17_Chr4g0065141 47.904 334 146 6 62 385 68 383 2.07e-99 300
Msa0139000 MtrunA17_Chr3g0138281 47.230 343 154 8 50 385 55 377 1.18e-93 285
Msa0139000 MtrunA17_Chr4g0068971 65.625 160 54 1 228 387 110 268 3.02e-69 219
Msa0139000 MtrunA17_Chr4g0068971 37.815 119 63 3 1 116 1 111 1.37e-14 73.6
Msa0139000 MtrunA17_Chr1g0150451 34.058 276 148 8 87 357 85 331 1.04e-42 152
Msa0139000 MtrunA17_Chr3g0136711 33.216 283 154 9 87 364 42 294 4.00e-41 147
Msa0139000 MtrunA17_Chr5g0426141 35.000 240 128 6 114 347 62 279 2.21e-37 136
Msa0139000 MtrunA17_Chr1g0150071 31.595 326 149 10 77 347 21 327 2.12e-36 135
Msa0139000 MtrunA17_Chr3g0115851 35.833 240 126 7 114 347 62 279 4.34e-36 133
Msa0139000 MtrunA17_Chr3g0136811 31.142 289 130 6 78 316 22 291 9.97e-36 134
Msa0139000 MtrunA17_Chr1g0212961 35.470 234 125 8 117 347 125 335 1.25e-35 133
Msa0139000 MtrunA17_Chr4g0001761 29.973 367 169 11 59 363 10 350 5.02e-35 132
Msa0139000 MtrunA17_Chr2g0279151 34.694 245 131 7 109 347 57 278 8.05e-35 129
Msa0139000 MtrunA17_Chr4g0050381 35.021 237 126 7 117 347 60 274 1.34e-34 129
Msa0139000 MtrunA17_Chr1g0171571 30.347 346 186 12 32 356 340 651 3.03e-34 134
Msa0139000 MtrunA17_Chr6g0483411 31.959 291 164 9 78 349 43 318 1.00e-33 127
Msa0139000 MtrunA17_Chr5g0430481 31.868 273 155 8 83 349 127 374 1.60e-33 128
Msa0139000 MtrunA17_Chr3g0127091 30.225 311 170 8 76 353 57 353 3.08e-32 125
Msa0139000 MtrunA17_Chr3g0105371 32.000 275 152 8 83 349 91 338 4.55e-32 124
Msa0139000 MtrunA17_Chr3g0105351 31.273 275 154 8 83 349 67 314 7.77e-32 122
Msa0139000 MtrunA17_Chr1g0150781 32.394 284 146 10 113 368 285 550 3.27e-31 124
Msa0139000 MtrunA17_Chr1g0158781 31.285 358 202 13 10 349 48 379 1.38e-30 120
Msa0139000 MtrunA17_Chr4g0070871 30.508 295 164 10 86 352 225 506 1.69e-30 122
Msa0139000 MtrunA17_Chr2g0317021 33.054 239 132 9 117 349 116 332 1.02e-28 114
Msa0139000 MtrunA17_Chr3g0126511 30.159 252 147 8 118 364 125 352 2.14e-28 114
Msa0139000 MtrunA17_Chr8g0360351 31.646 237 134 9 117 347 65 279 9.56e-28 110
Msa0139000 MtrunA17_Chr5g0396731 33.065 248 141 8 81 319 74 305 3.35e-27 110
Msa0139000 MtrunA17_Chr3g0112291 29.866 298 148 9 87 347 100 373 4.61e-27 110
Msa0139000 MtrunA17_Chr2g0299981 33.482 224 115 7 118 314 267 483 9.58e-27 111
Msa0139000 MtrunA17_Chr3g0135961 31.298 262 146 8 118 351 286 541 2.05e-26 110
Msa0139000 MtrunA17_Chr4g0051661 32.068 237 132 9 117 347 182 395 1.50e-25 107
Msa0139000 MtrunA17_Chr5g0435721 29.070 258 143 6 77 317 190 424 2.65e-23 101
Msa0139000 MtrunA17_Chr8g0389921 29.153 295 177 7 81 351 150 436 2.89e-22 97.8
Msa0139000 MtrunA17_Chr2g0295401 32.714 269 139 11 120 352 94 356 6.15e-22 95.9
Msa0139000 MtrunA17_Chr6g0486661 28.146 302 142 12 118 364 124 405 9.30e-20 91.7
Msa0139000 MtrunA17_Chr4g0066371 29.167 288 131 10 118 357 86 348 2.01e-19 89.4
Msa0139000 MtrunA17_Chr1g0207571 29.316 307 139 11 112 357 54 343 3.16e-19 88.6
Msa0139000 MtrunA17_Chr3g0089721 28.926 242 115 9 118 317 68 294 4.74e-19 87.8
Msa0139000 MtrunA17_Chr7g0256771 26.939 245 124 7 114 317 66 296 8.24e-19 86.3
Msa0139000 MtrunA17_Chr1g0209451 30.293 307 173 15 76 366 32 313 9.42e-19 87.4
Msa0139000 MtrunA17_Chr4g0067711 26.812 276 160 8 118 357 91 360 1.42e-18 86.3
Msa0139000 MtrunA17_Chr3g0089711 28.279 244 118 9 116 317 66 294 1.75e-18 86.3
Msa0139000 MtrunA17_Chr5g0394181 30.337 267 148 12 110 353 350 601 9.05e-18 85.1
Msa0139000 MtrunA17_Chr1g0151781 30.263 228 121 9 117 312 67 288 1.99e-17 82.8
Msa0139000 MtrunA17_Chr1g0175381 26.493 268 136 9 108 334 69 316 2.19e-17 83.2
Msa0139000 MtrunA17_Chr2g0324061 30.833 240 115 11 118 312 90 323 2.67e-17 83.2
Msa0139000 MtrunA17_Chr7g0256751 28.151 238 122 10 118 317 69 295 4.10e-17 82.8
Msa0139000 MtrunA17_Chr7g0263281 26.518 313 166 13 103 361 57 359 6.24e-17 81.6
Msa0139000 MtrunA17_Chr1g0153671 29.213 267 150 12 117 366 64 308 6.62e-17 82.0
Msa0139000 MtrunA17_Chr7g0243571 29.119 261 133 9 118 335 92 343 2.18e-16 80.5
Msa0139000 MtrunA17_Chr2g0294291 27.165 254 136 9 118 335 75 315 3.63e-16 79.3
Msa0139000 MtrunA17_Chr1g0213351 26.552 290 144 10 118 351 80 356 8.01e-16 78.2
Msa0139000 MtrunA17_Chr2g0286951 26.667 285 145 11 118 358 87 351 1.17e-15 78.2
Msa0139000 MtrunA17_Chr1g0181901 28.226 248 123 10 103 312 67 297 1.34e-15 77.8
Msa0139000 MtrunA17_Chr7g0271971 29.119 261 151 11 117 361 67 309 1.95e-15 77.4
Msa0139000 MtrunA17_Chr7g0249421 28.906 256 118 9 116 312 94 344 2.03e-15 77.8
Msa0139000 MtrunA17_Chr7g0272061 26.277 274 152 10 80 312 57 321 5.91e-15 75.9
Msa0139000 MtrunA17_Chr4g0063111 26.190 294 154 12 109 350 65 347 6.49e-15 76.3
Msa0139000 MtrunA17_Chr1g0211251 25.087 287 154 10 117 351 80 357 7.21e-15 75.5
Msa0139000 MtrunA17_Chr1g0192421 29.437 231 118 11 118 312 89 310 7.61e-15 75.1
Msa0139000 MtrunA17_Chr7g0221691 28.740 254 123 10 116 317 127 374 2.46e-14 74.3
Msa0139000 MtrunA17_Chr4g0039061 26.190 252 144 8 118 334 202 446 3.31e-14 73.9
Msa0139000 MtrunA17_Chr8g0371321 25.874 286 151 9 118 351 79 355 3.33e-14 73.6
Msa0139000 MtrunA17_Chr4g0022171 28.030 264 134 11 118 335 96 349 4.57e-14 73.6
Msa0139000 MtrunA17_Chr4g0004971 25.828 302 170 11 55 318 24 309 1.20e-13 71.6
Msa0139000 MtrunA17_Chr7g0250061 26.400 250 144 8 117 335 75 315 1.28e-13 71.6
Msa0139000 MtrunA17_Chr3g0089691 27.979 193 98 6 163 317 19 208 1.70e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139000 AT3G62260.1 61.224 392 137 8 1 386 1 383 9.32e-166 469
Msa0139000 AT3G62260.2 61.224 392 138 8 1 386 1 384 1.90e-165 469
Msa0139000 AT3G62260.3 68.243 296 91 2 92 386 1 294 1.19e-149 425
Msa0139000 AT1G48040.1 58.376 394 138 11 1 386 7 382 3.43e-145 417
Msa0139000 AT3G17250.1 55.495 364 142 10 34 386 68 422 1.06e-129 379
Msa0139000 AT2G33700.1 53.605 319 125 3 73 386 78 378 4.78e-117 345
Msa0139000 AT3G51470.2 49.524 315 132 4 74 384 23 314 1.65e-105 314
Msa0139000 AT3G51470.1 49.524 315 132 4 74 384 67 358 6.24e-105 314
Msa0139000 AT2G25620.1 46.087 345 157 7 53 386 63 389 5.03e-95 290
Msa0139000 AT2G25620.2 46.087 345 157 7 53 386 63 389 5.03e-95 290
Msa0139000 AT5G10740.1 35.294 272 142 8 81 347 35 277 4.41e-44 156
Msa0139000 AT5G10740.2 35.294 272 142 8 81 347 35 277 4.41e-44 156
Msa0139000 AT4G31750.1 34.962 266 139 8 87 347 41 277 8.09e-43 152
Msa0139000 AT4G31750.3 34.962 266 139 8 87 347 41 277 8.09e-43 152
Msa0139000 AT4G31750.2 34.962 266 139 8 87 347 41 277 8.34e-43 152
Msa0139000 AT5G24940.1 34.191 272 145 8 81 347 35 277 3.01e-42 154
Msa0139000 AT2G25070.1 30.564 337 160 6 78 359 22 339 3.88e-41 149
Msa0139000 AT2G25070.2 30.564 337 160 6 78 359 22 339 3.88e-41 149
Msa0139000 AT1G07160.1 33.574 277 154 7 83 352 126 379 6.79e-38 140
Msa0139000 AT1G43900.1 33.704 270 136 10 87 347 131 366 3.98e-37 138
Msa0139000 AT4G31860.1 29.204 339 166 6 78 361 22 341 1.87e-36 136
Msa0139000 AT1G78200.1 34.601 263 138 8 99 347 38 280 5.14e-36 133
Msa0139000 AT1G78200.3 34.601 263 138 8 99 347 38 280 5.14e-36 133
Msa0139000 AT1G78200.2 34.601 263 138 8 99 347 38 280 5.14e-36 133
Msa0139000 AT1G78200.5 34.661 251 136 8 105 347 5 235 8.36e-36 131
Msa0139000 AT1G78200.4 34.661 251 136 8 105 347 5 235 8.36e-36 131
Msa0139000 AT1G22280.3 33.333 237 136 6 117 347 64 284 3.12e-35 131
Msa0139000 AT4G31860.3 30.796 289 131 5 78 316 22 291 7.35e-35 130
Msa0139000 AT2G30020.1 32.482 274 154 8 83 349 143 392 3.26e-34 131
Msa0139000 AT1G67820.2 31.746 252 144 6 87 334 92 319 6.97e-34 130
Msa0139000 AT1G67820.1 31.746 252 144 6 87 334 128 355 1.96e-33 130
Msa0139000 AT5G53140.1 32.051 234 135 6 118 347 132 345 4.59e-33 128
Msa0139000 AT5G53140.2 32.051 234 135 6 118 347 132 345 4.59e-33 128
Msa0139000 AT1G22280.1 32.489 237 132 6 117 347 64 278 5.19e-33 125
Msa0139000 AT2G40180.1 32.226 301 177 9 58 352 109 388 7.33e-33 127
Msa0139000 AT2G20630.2 31.799 239 135 9 117 349 62 278 9.20e-33 124
Msa0139000 AT1G34750.2 32.636 239 133 6 117 349 65 281 1.79e-32 124
Msa0139000 AT1G34750.1 32.636 239 133 6 117 349 65 281 1.79e-32 124
Msa0139000 AT1G34750.3 32.636 239 133 6 117 349 65 281 1.79e-32 124
Msa0139000 AT4G26080.1 29.700 367 207 13 35 359 75 432 2.09e-32 127
Msa0139000 AT2G20630.1 31.646 237 134 9 117 347 62 276 2.77e-32 123
Msa0139000 AT2G40860.1 30.368 326 182 10 47 356 359 655 3.13e-32 128
Msa0139000 AT2G40860.4 30.368 326 182 10 47 356 261 557 3.70e-32 127
Msa0139000 AT4G28400.3 32.068 237 133 9 117 347 44 258 5.66e-31 119
Msa0139000 AT4G28400.1 32.068 237 133 9 117 347 66 280 9.54e-31 119
Msa0139000 AT1G18030.1 30.903 288 163 9 85 352 80 351 1.00e-30 120
Msa0139000 AT4G31860.2 30.037 273 122 5 78 300 22 275 6.67e-30 116
Msa0139000 AT2G29380.1 31.250 304 160 10 75 347 73 358 1.15e-29 118
Msa0139000 AT2G40860.2 30.363 303 166 10 47 333 359 632 1.63e-28 117
Msa0139000 AT5G57050.2 32.569 218 135 5 102 314 104 314 1.74e-28 115
Msa0139000 AT5G57050.1 34.158 202 121 5 118 314 160 354 1.97e-28 115
Msa0139000 AT1G07430.1 28.826 281 164 7 49 318 105 360 2.18e-28 115
Msa0139000 AT3G15260.2 30.380 237 137 7 117 347 72 286 2.80e-28 112
Msa0139000 AT3G15260.1 30.380 237 137 7 117 347 72 286 2.80e-28 112
Msa0139000 AT4G27800.1 31.212 330 172 11 72 366 52 361 4.99e-28 114
Msa0139000 AT5G51760.2 31.008 258 147 6 81 317 80 327 8.25e-27 110
Msa0139000 AT5G51760.1 31.008 258 147 6 81 317 110 357 1.18e-26 110
Msa0139000 AT3G11410.1 31.538 260 147 6 75 317 102 347 4.56e-26 108
Msa0139000 AT1G18030.2 31.224 237 128 8 85 302 80 300 3.06e-25 104
Msa0139000 AT4G27800.2 31.313 297 155 9 72 334 52 333 5.32e-25 104
Msa0139000 AT1G17550.1 26.897 290 166 7 102 351 220 503 1.95e-24 105
Msa0139000 AT1G17550.2 26.897 290 166 7 102 351 220 503 1.95e-24 105
Msa0139000 AT4G27800.3 31.469 286 147 9 72 323 52 322 3.39e-24 102
Msa0139000 AT1G72770.4 29.304 273 147 8 118 351 238 503 8.11e-24 103
Msa0139000 AT1G72770.1 29.304 273 147 8 118 351 238 503 8.11e-24 103
Msa0139000 AT1G72770.3 29.304 273 147 8 118 351 238 503 8.11e-24 103
Msa0139000 AT4G28400.2 33.333 192 104 7 117 302 66 239 9.20e-24 99.4
Msa0139000 AT5G59220.1 30.195 308 173 11 32 317 60 347 9.49e-24 102
Msa0139000 AT2G20050.1 29.856 278 132 10 118 352 143 400 3.27e-23 102
Msa0139000 AT2G20050.2 29.856 278 132 10 118 352 143 400 3.39e-23 102
Msa0139000 AT3G06270.1 28.058 278 137 8 118 352 88 345 4.12e-22 96.7
Msa0139000 AT1G34750.4 31.771 192 107 5 117 302 65 238 9.38e-22 93.6
Msa0139000 AT2G34740.1 27.917 240 143 11 117 349 118 334 1.38e-20 92.4
Msa0139000 AT1G68410.4 29.154 319 182 13 62 365 29 318 1.51e-19 90.5
Msa0139000 AT1G68410.3 29.154 319 182 13 62 365 29 318 1.51e-19 90.5
Msa0139000 AT1G68410.1 29.154 319 182 13 62 365 29 318 1.51e-19 90.5
Msa0139000 AT1G68410.2 29.154 319 182 13 62 365 29 318 1.51e-19 90.5
Msa0139000 AT2G40860.3 30.418 263 141 9 47 293 359 595 3.90e-19 89.7
Msa0139000 AT3G16800.2 30.894 246 135 9 117 336 92 328 9.83e-19 87.0
Msa0139000 AT3G16800.1 30.894 246 135 9 117 336 92 328 9.83e-19 87.0
Msa0139000 AT3G16800.3 30.894 246 135 9 117 336 92 328 9.83e-19 87.0
Msa0139000 AT5G02760.1 28.322 286 142 12 117 350 71 345 1.03e-18 87.4
Msa0139000 AT4G08260.1 30.508 236 116 9 117 349 18 208 4.32e-18 82.8
Msa0139000 AT1G09160.2 30.189 265 147 12 116 361 64 309 7.01e-18 85.1
Msa0139000 AT1G09160.1 30.189 265 147 12 116 361 64 309 7.01e-18 85.1
Msa0139000 AT3G16800.4 33.862 189 96 6 168 336 54 233 9.58e-18 82.8
Msa0139000 AT3G16800.6 33.862 189 96 6 168 336 54 233 9.58e-18 82.8
Msa0139000 AT5G06750.3 26.996 263 149 7 108 336 72 325 1.17e-17 84.3
Msa0139000 AT5G06750.1 26.996 263 149 7 108 336 72 325 1.17e-17 84.3
Msa0139000 AT5G26010.1 28.782 271 153 8 66 312 29 283 1.37e-17 83.6
Msa0139000 AT2G34740.2 30.392 204 115 11 117 312 132 316 1.55e-17 83.2
Msa0139000 AT3G12620.2 27.393 303 145 13 108 351 73 359 1.60e-17 84.0
Msa0139000 AT3G12620.1 27.393 303 145 13 108 351 73 359 1.60e-17 84.0
Msa0139000 AT3G17090.1 28.000 250 138 8 117 334 83 322 1.63e-17 84.0
Msa0139000 AT5G57050.3 31.333 150 97 3 118 262 160 308 1.67e-17 82.8
Msa0139000 AT2G34740.3 30.392 204 115 11 117 312 114 298 1.76e-17 82.8
Msa0139000 AT3G17090.2 28.017 232 132 6 117 317 83 310 2.35e-17 82.4
Msa0139000 AT5G27930.1 29.762 252 133 10 118 335 92 333 3.24e-17 82.8
Msa0139000 AT5G27930.2 29.762 252 133 10 118 335 92 333 3.24e-17 82.8
Msa0139000 AT5G19280.1 29.183 257 155 10 109 347 328 575 3.87e-17 83.6
Msa0139000 AT3G05640.2 29.134 254 142 10 110 335 85 328 2.00e-16 80.5
Msa0139000 AT3G05640.1 29.134 254 142 10 110 335 85 328 2.00e-16 80.5
Msa0139000 AT3G05640.3 29.134 254 142 10 110 335 85 328 2.00e-16 80.5
Msa0139000 AT4G03415.1 30.165 242 118 11 117 312 96 332 3.63e-16 80.5
Msa0139000 AT4G03415.3 30.165 242 118 11 117 312 96 332 3.63e-16 80.5
Msa0139000 AT4G03415.2 30.165 242 118 11 117 312 96 332 3.63e-16 80.5
Msa0139000 AT1G16220.1 29.778 225 127 8 150 349 156 374 4.06e-16 80.1
Msa0139000 AT4G32950.1 26.568 271 160 10 117 364 71 325 5.97e-16 78.6
Msa0139000 AT5G36250.1 26.154 325 152 11 116 361 96 411 9.02e-16 79.0
Msa0139000 AT5G19280.2 28.464 267 154 11 109 347 328 585 1.44e-15 79.0
Msa0139000 AT3G02750.2 32.778 180 97 6 152 312 179 353 2.06e-15 78.2
Msa0139000 AT3G02750.1 32.778 180 97 6 152 312 179 353 2.06e-15 78.2
Msa0139000 AT3G51370.1 23.826 298 165 9 117 362 78 365 3.91e-15 76.6
Msa0139000 AT3G51370.3 23.826 298 165 9 117 362 78 365 3.91e-15 76.6
Msa0139000 AT3G27140.1 27.615 239 105 6 114 349 15 188 8.39e-15 73.9
Msa0139000 AT1G79630.6 32.258 186 94 6 187 349 111 287 1.39e-14 75.1
Msa0139000 AT1G79630.3 32.258 186 94 6 187 349 111 287 1.39e-14 75.1
Msa0139000 AT1G79630.4 32.258 186 94 6 187 349 111 287 1.39e-14 75.1
Msa0139000 AT1G79630.5 32.258 186 94 6 187 349 111 287 1.39e-14 75.1
Msa0139000 AT3G55050.1 24.510 306 150 9 116 359 82 368 1.72e-14 74.7
Msa0139000 AT3G55050.2 24.510 306 150 9 116 359 82 368 1.72e-14 74.7
Msa0139000 AT1G79630.2 32.258 186 94 6 187 349 151 327 1.99e-14 74.7
Msa0139000 AT1G79630.7 32.258 186 94 6 187 349 151 327 1.99e-14 74.7
Msa0139000 AT1G79630.8 32.258 186 94 6 187 349 217 393 2.17e-14 75.1
Msa0139000 AT1G79630.1 32.258 186 94 6 187 349 221 397 2.48e-14 74.7
Msa0139000 AT1G22280.2 35.556 135 66 4 117 246 64 182 3.38e-14 71.2
Msa0139000 AT4G38520.2 25.392 319 171 9 82 347 49 353 3.63e-14 73.9
Msa0139000 AT4G38520.1 25.392 319 171 9 82 347 49 353 3.63e-14 73.9
Msa0139000 AT1G03590.1 27.536 276 137 11 83 312 64 322 4.55e-14 73.9
Msa0139000 AT5G59220.2 29.084 251 142 10 32 260 60 296 5.38e-14 72.4
Msa0139000 AT5G01700.1 27.556 225 128 7 118 312 29 248 7.53e-14 72.4
Msa0139000 AT1G72770.2 31.515 165 90 5 118 260 238 401 1.03e-13 72.4
Msa0139000 AT1G72770.5 31.515 165 90 5 118 260 238 401 1.03e-13 72.4
Msa0139000 AT5G01700.2 27.556 225 128 7 118 312 78 297 1.10e-13 72.4
Msa0139000 AT5G36250.2 25.074 339 152 12 116 361 96 425 1.04e-12 69.7
Msa0139000 AT5G66080.1 26.087 253 141 9 117 335 81 321 2.00e-12 68.6
Msa0139000 AT5G06750.2 28.415 183 90 6 188 336 68 243 2.42e-11 64.7
Msa0139000 AT4G32950.2 29.557 203 113 8 117 299 71 263 3.17e-11 63.9

Find 118 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTACTGCTTTGATATT+TGG 0.143776 1_3:-72219484 Msa0139000:CDS
GTTGAGGATGGTTATCTTAA+TGG 0.188453 1_3:-72218956 Msa0139000:CDS
AAATCCCTGGCGCACTTCTC+TGG 0.265688 1_3:+72218722 None:intergenic
CCATAAAAGGCACTTGGTTT+AGG 0.274695 1_3:+72219798 None:intergenic
CTTATATACGCTGCAGCTTC+AGG 0.274755 1_3:+72219673 None:intergenic
TCATAGGATGCGACGGCATC+TGG 0.286067 1_3:-72218808 Msa0139000:CDS
CCAAAAGAAAAGCCTTTCTA+AGG 0.291213 1_3:+72219560 None:intergenic
AAAGCTCATTACCCCATAAA+AGG 0.322934 1_3:+72219785 None:intergenic
TGATTATTGCTCCCTTTATT+CGG 0.324053 1_3:+72220958 None:intergenic
TGCTTCTTTCAGGCTTCTAA+TGG 0.327203 1_3:-72219101 Msa0139000:intron
CTCCGCTCTGATGGATAAAT+AGG 0.332580 1_3:+72219004 None:intergenic
AGATGATTTGTCATCTCATC+TGG 0.348517 1_3:-72219838 Msa0139000:CDS
TGTTCTAAAATTCTTCTTTG+AGG 0.363877 1_3:-72219644 Msa0139000:CDS
CTCAATTTCCGTTGGGGAGG+TGG 0.372037 1_3:+72218605 None:intergenic
GCCTCTCCTCCCTTGACCAT+GGG 0.399297 1_3:-72218643 Msa0139000:CDS
ACATGGAAGATGAACATATA+AGG 0.401510 1_3:-72219863 Msa0139000:CDS
TTTGTCCCCTCCATCCGTTC+CGG 0.407179 1_3:-72219915 Msa0139000:CDS
CAAATGTATCAGGTATTTGA+TGG 0.410247 1_3:-72219706 Msa0139000:intron
TGTACATATCCCAGGGTTAG+AGG 0.423945 1_3:-72218398 Msa0139000:three_prime_UTR
TTGTAGCTTGAGAAGCTTGT+TGG 0.428662 1_3:-72218555 Msa0139000:CDS
ATTTAGTTATGGAGGCATTA+CGG 0.434702 1_3:-72218703 Msa0139000:CDS
AGCAATGTGAACACTTCATC+AGG 0.438598 1_3:-72219514 Msa0139000:CDS
GGTAGAGAATTCCCTTAGAA+AGG 0.439506 1_3:-72219572 Msa0139000:CDS
GTGCGCCAGGGATTTAGTTA+TGG 0.439518 1_3:-72218714 Msa0139000:CDS
TTCCGTTGGGGAGGTGGTGA+TGG 0.442729 1_3:+72218611 None:intergenic
ACAGCATCTCAATTTCCGTT+GGG 0.444872 1_3:+72218598 None:intergenic
GCCTTGTTCGTAAAGGTTTG+AGG 0.452873 1_3:-72218757 Msa0139000:CDS
TCTGTTGATGTACATATCCC+AGG 0.456114 1_3:-72218406 Msa0139000:three_prime_UTR
TTACGAGAGCACTAGGGGAC+TGG 0.457323 1_3:-72218922 Msa0139000:CDS
TTGACATGTCTCAAGATCAT+AGG 0.464758 1_3:-72219027 Msa0139000:CDS
TCAACTCGCCTCCGCTCTGA+TGG 0.483657 1_3:+72218995 None:intergenic
CTTCTAATGGTGGCAAATGC+CGG 0.483674 1_3:-72219088 Msa0139000:CDS
TTATCAGTTACGAGAGCACT+AGG 0.490748 1_3:-72218929 Msa0139000:CDS
CCCAATGTCGGCAAAACTAC+CGG 0.492205 1_3:+72219896 None:intergenic
TACAGCATCTCAATTTCCGT+TGG 0.495681 1_3:+72218597 None:intergenic
TGCCTCTCCTCCCTTGACCA+TGG 0.496106 1_3:-72218644 Msa0139000:CDS
AATCCCTGGCGCACTTCTCT+GGG 0.496285 1_3:+72218723 None:intergenic
CATTGGGCCACGTAGATACA+TGG 0.506610 1_3:-72219880 Msa0139000:CDS
ACACCACCATCCTCTAACCC+TGG 0.507049 1_3:+72218388 None:intergenic
ATGACCCAGAGAAGTGCGCC+AGG 0.512332 1_3:-72218727 Msa0139000:CDS
CATAGGATGCGACGGCATCT+GGG 0.522185 1_3:-72218807 Msa0139000:CDS
TTCTTTCAGGCTTCTAATGG+TGG 0.526946 1_3:-72219098 Msa0139000:intron
GCTCTGACTCCCCATGGTCA+AGG 0.526959 1_3:+72218633 None:intergenic
ACTGCTTCAGGTTTAGGCGT+AGG 0.532495 1_3:-72218457 Msa0139000:three_prime_UTR
TACGAGAGCACTAGGGGACT+GGG 0.534331 1_3:-72218921 Msa0139000:CDS
GCTGTTAGCCTTGTTCGTAA+AGG 0.539320 1_3:-72218764 Msa0139000:CDS
GATGACGAATTCCTCATCAT+AGG 0.544393 1_3:-72218824 Msa0139000:CDS
AAAACTACCGGAACGGATGG+AGG 0.545279 1_3:+72219908 None:intergenic
CTCTGACTCCCCATGGTCAA+GGG 0.545804 1_3:+72218634 None:intergenic
CGAGCAGTTCTCAGTCGTAA+AGG 0.550384 1_3:-72219058 Msa0139000:CDS
AACTACCGGAACGGATGGAG+GGG 0.553531 1_3:+72219910 None:intergenic
AAACTACCGGAACGGATGGA+GGG 0.556241 1_3:+72219909 None:intergenic
TCCTCAAACCTTTACGAACA+AGG 0.556250 1_3:+72218756 None:intergenic
TGCCTCCATAACTAAATCCC+TGG 0.558404 1_3:+72218709 None:intergenic
CATCCTCTGTTAGAACCACT+TGG 0.559287 1_3:+72218843 None:intergenic
GGCAAAACTACCGGAACGGA+TGG 0.564330 1_3:+72219905 None:intergenic
CACCACCATCCTCTAACCCT+GGG 0.565669 1_3:+72218389 None:intergenic
TTACTGCTTTGATATTTGGA+AGG 0.566507 1_3:-72219480 Msa0139000:intron
ACAGATATAACCTCGGAAGC+TGG 0.566543 1_3:-72219960 Msa0139000:CDS
AGAACCACTTGGTGGAACTC+AGG 0.569374 1_3:+72218854 None:intergenic
CGCCAGGGATTTAGTTATGG+AGG 0.569650 1_3:-72218711 Msa0139000:CDS
ATTACCCCATAAAAGGCACT+TGG 0.570593 1_3:+72219792 None:intergenic
AAATAAATGTCGTGTCATAG+TGG 0.573103 1_3:+72218317 None:intergenic
TTGGGTGGCTATGTTGAGGA+TGG 0.578073 1_3:-72218968 Msa0139000:CDS
GAGAACTGCTCGGCAGTCAC+CGG 0.579491 1_3:+72219069 None:intergenic
GTGATGGCTCTGACTCCCCA+TGG 0.582322 1_3:+72218627 None:intergenic
CCTCTGTTAGAACCACTTGG+TGG 0.583923 1_3:+72218846 None:intergenic
CCTCTCCTCCCTTGACCATG+GGG 0.584021 1_3:-72218642 Msa0139000:CDS
CTGTTGATGTACATATCCCA+GGG 0.586218 1_3:-72218405 Msa0139000:three_prime_UTR
CAAAAGAAAAGCCTTTCTAA+GGG 0.589375 1_3:+72219561 None:intergenic
ATGCTGTAGCCTCTCTGCAG+AGG 0.592273 1_3:-72218582 Msa0139000:CDS
ACTGGGACATGAAGTTACCT+AGG 0.593025 1_3:-72218904 Msa0139000:CDS
ATGATCTTGAGACATGTCAA+TGG 0.593621 1_3:+72219030 None:intergenic
GGGAGCAATAATCACGAGAT+CGG 0.595829 1_3:-72220949 Msa0139000:CDS
AACTCAGGATCTGCAATCAA+AGG 0.595994 1_3:+72218869 None:intergenic
TTCCTCATCATAGGATGCGA+CGG 0.597323 1_3:-72218815 Msa0139000:CDS
CCCCATGGTCAAGGGAGGAG+AGG 0.598657 1_3:+72218642 None:intergenic
AGGATCTGCAATCAAAGGTG+AGG 0.598833 1_3:+72218874 None:intergenic
AGCTTGAGAAGCTTGTTGGA+AGG 0.599170 1_3:-72218551 Msa0139000:CDS
GTATCTACGTGGCCCAATGT+CGG 0.599170 1_3:+72219884 None:intergenic
TATCAACTTCAGATATCTGA+GGG 0.604131 1_3:+72219611 None:intergenic
TATCAGGTATTTGATGGTCA+CGG 0.605355 1_3:-72219700 Msa0139000:intron
GGATCTGCAATCAAAGGTGA+GGG 0.605483 1_3:+72218875 None:intergenic
GATGATTTGTCATCTCATCT+GGG 0.605596 1_3:-72219837 Msa0139000:CDS
CATCTAATAAAGTGTTGTGG+AGG 0.605884 1_3:-72218498 Msa0139000:three_prime_UTR
CATATCCCAGGGTTAGAGGA+TGG 0.606934 1_3:-72218394 Msa0139000:three_prime_UTR
ATTCATCTAATAAAGTGTTG+TGG 0.607265 1_3:-72218501 Msa0139000:three_prime_UTR
TTGTTCGTAAAGGTTTGAGG+AGG 0.607519 1_3:-72218754 Msa0139000:CDS
TATCAGTTACGAGAGCACTA+GGG 0.607697 1_3:-72218928 Msa0139000:CDS
CATCTCAATTTCCGTTGGGG+AGG 0.607773 1_3:+72218602 None:intergenic
ATCAGTTACGAGAGCACTAG+GGG 0.608348 1_3:-72218927 Msa0139000:CDS
AAAGGTGAGGGAGTACCCCT+AGG 0.611278 1_3:+72218887 None:intergenic
CTGGGACATGAAGTTACCTA+GGG 0.615233 1_3:-72218903 Msa0139000:CDS
CAGCATCTCAATTTCCGTTG+GGG 0.615519 1_3:+72218599 None:intergenic
GGAAGCTGGTCTTGAATCTG+CGG 0.621302 1_3:-72219946 Msa0139000:CDS
AGATTCAAGACCAGCTTCCG+AGG 0.622877 1_3:+72219950 None:intergenic
TGCCGTCGCATCCTATGATG+AGG 0.626062 1_3:+72218813 None:intergenic
TTATCAACTTCAGATATCTG+AGG 0.626203 1_3:+72219610 None:intergenic
AGCCATCACCACCTCCCCAA+CGG 0.627178 1_3:-72218613 Msa0139000:CDS
AGATCCTGAGTTCCACCAAG+TGG 0.637528 1_3:-72218858 Msa0139000:CDS
TGACTCCCCATGGTCAAGGG+AGG 0.641391 1_3:+72218637 None:intergenic
AGTTCTCAGTCGTAAAGGAG+AGG 0.648854 1_3:-72219053 Msa0139000:CDS
TGTCGGCAAAACTACCGGAA+CGG 0.650590 1_3:+72219901 None:intergenic
CTATTTATCCATCAGAGCGG+AGG 0.652008 1_3:-72219003 Msa0139000:CDS
TATCAAAGCAGTAAGAGCTG+TGG 0.655912 1_3:+72219489 None:intergenic
CCACCAAGTGGTTCTAACAG+AGG 0.661607 1_3:-72218846 Msa0139000:CDS
TGTTGTGTGTCAACAAAGCG+TGG 0.664702 1_3:-72220995 Msa0139000:CDS
AAAATTGGGTGGCTATGTTG+AGG 0.666115 1_3:-72218972 Msa0139000:CDS
CTTTACGACTGAGAACTGCT+CGG 0.672783 1_3:+72219059 None:intergenic
ATCCCAGGGTTAGAGGATGG+TGG 0.685752 1_3:-72218391 Msa0139000:three_prime_UTR
TGACCCAGAGAAGTGCGCCA+GGG 0.686052 1_3:-72218726 Msa0139000:CDS
TACAAAGAGCCTCTGCAGAG+AGG 0.687122 1_3:+72218573 None:intergenic
GCAATGTGAACACTTCATCA+GGG 0.690510 1_3:-72219513 Msa0139000:CDS
TAAGACTACAGATATAACCT+CGG 0.729528 1_3:-72219967 Msa0139000:CDS
TCATCTTCCATGTATCTACG+TGG 0.732485 1_3:+72219873 None:intergenic
GGCCTATTTATCCATCAGAG+CGG 0.741189 1_3:-72219006 Msa0139000:CDS
CAGGTATTTGATGGTCACGG+AGG 0.753703 1_3:-72219697 Msa0139000:CDS
TGGGACATGAAGTTACCTAG+GGG 0.804911 1_3:-72218902 Msa0139000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAGAAAAACAAATT+TGG - chr1_3:72218850-72218869 Msa0139000:CDS 10.0%
!! AGAAAAAGTAGAAAAAAAAA+TGG - chr1_3:72218493-72218512 Msa0139000:three_prime_UTR 15.0%
!! AAACTAAATTATCAAAATTC+AGG + chr1_3:72218935-72218954 None:intergenic 15.0%
!!! TTTTTATTTAGCTTAGAAAT+TGG - chr1_3:72218959-72218978 Msa0139000:CDS 15.0%
!!! TTACATTATTATTTTGTACT+AGG - chr1_3:72221177-72221196 Msa0139000:five_prime_UTR 15.0%
!!! TGTATCAATAAAATTTTGTT+TGG - chr1_3:72221243-72221262 Msa0139000:five_prime_UTR 15.0%
!! AAAAGTAGAAAAAAAAATGG+TGG - chr1_3:72218496-72218515 Msa0139000:three_prime_UTR 20.0%
!!! AATTCTTTGACTTCTATTTT+GGG - chr1_3:72218810-72218829 Msa0139000:CDS 20.0%
!!! AAAACAAATTTGGAAACTTT+TGG - chr1_3:72218860-72218879 Msa0139000:CDS 20.0%
!! GGATCATCATAAAAATAAAT+TGG + chr1_3:72219005-72219024 None:intergenic 20.0%
!!! TCCAAATTTTTTTTAGAACA+AGG - chr1_3:72219022-72219041 Msa0139000:CDS 20.0%
!!! CCAAATTTTTTTTAGAACAA+GGG - chr1_3:72219023-72219042 Msa0139000:CDS 20.0%
!! AATTGTGATTGTAATTTGAT+TGG - chr1_3:72219193-72219212 Msa0139000:intron 20.0%
!! GGATCATTTAATACTAATAA+TGG + chr1_3:72219269-72219288 None:intergenic 20.0%
!!! TGATAATGTATTTTTACAAG+AGG - chr1_3:72219934-72219953 Msa0139000:CDS 20.0%
!! AAGAAATAAACATTAGATAG+TGG + chr1_3:72220112-72220131 None:intergenic 20.0%
!!! TTTCTTTTGTACATTTGTAA+TGG - chr1_3:72220126-72220145 Msa0139000:intron 20.0%
!! TAAACATGTTTCATTAGATA+TGG - chr1_3:72220263-72220282 Msa0139000:intron 20.0%
!!! TGAAGTATTTTCCGAATAAA+GGG - chr1_3:72218558-72218577 Msa0139000:CDS 25.0%
! AACAGAAGAAATTCTCAAAA+GGG + chr1_3:72218694-72218713 None:intergenic 25.0%
! AAACAGAAGAAATTCTCAAA+AGG + chr1_3:72218695-72218714 None:intergenic 25.0%
!! TTGAGAATTTCTTCTGTTTT+TGG - chr1_3:72218696-72218715 Msa0139000:CDS 25.0%
!!! TTTTGGTGATTTTGTTTTGT+TGG - chr1_3:72218713-72218732 Msa0139000:CDS 25.0%
!!! GAATTCTTTGACTTCTATTT+TGG - chr1_3:72218809-72218828 Msa0139000:CDS 25.0%
! TGAATTTGATTGATCTTAGA+AGG - chr1_3:72218904-72218923 Msa0139000:CDS 25.0%
!!! CCCTTGTTCTAAAAAAAATT+TGG + chr1_3:72219026-72219045 None:intergenic 25.0%
! AAATATGCTGCAACTAATAA+TGG + chr1_3:72219343-72219362 None:intergenic 25.0%
!! TTTTCTTTTCATTTCTCATG+TGG - chr1_3:72219367-72219386 Msa0139000:intron 25.0%
!! TGATTTGCGTTTAATTATTC+TGG - chr1_3:72219527-72219546 Msa0139000:CDS 25.0%
! TTGTAAATCTAATTGAGCTT+TGG - chr1_3:72219798-72219817 Msa0139000:CDS 25.0%
!!! TGTTCTAAAATTCTTCTTTG+AGG - chr1_3:72219883-72219902 Msa0139000:CDS 25.0%
! TTTGTAATGGCTATAATGTA+TGG - chr1_3:72220139-72220158 Msa0139000:intron 25.0%
! TTGTAATGGCTATAATGTAT+GGG - chr1_3:72220140-72220159 Msa0139000:intron 25.0%
! TATAATGTATGGGTACTATT+AGG - chr1_3:72220150-72220169 Msa0139000:intron 25.0%
!! TTTTTATTCTTCTACCTAGA+GGG + chr1_3:72220337-72220356 None:intergenic 25.0%
!!! TTTTTTATTCTTCTACCTAG+AGG + chr1_3:72220338-72220357 None:intergenic 25.0%
! GTAGAAGAATAAAAAAACTC+TGG - chr1_3:72220342-72220361 Msa0139000:intron 25.0%
! AAGTCAGTTAAACAAACAAA+GGG + chr1_3:72220400-72220419 None:intergenic 25.0%
!!! ATTCATCTAATAAAGTGTTG+TGG - chr1_3:72221026-72221045 Msa0139000:exon 25.0%
!! GTGAAGTATTTTCCGAATAA+AGG - chr1_3:72218557-72218576 Msa0139000:CDS 30.0%
TGATTATTGCTCCCTTTATT+CGG + chr1_3:72218572-72218591 None:intergenic 30.0%
CAAAGAAACTCAATTTCAAC+TGG + chr1_3:72219062-72219081 None:intergenic 30.0%
TGAAATTGAGTTTCTTTGTG+AGG - chr1_3:72219064-72219083 Msa0139000:CDS 30.0%
! TAAAGTAGTTGATACCAAGA+AGG - chr1_3:72219110-72219129 Msa0139000:intron 30.0%
GTTTATAACCTTCATTGTTG+AGG - chr1_3:72219218-72219237 Msa0139000:intron 30.0%
!!! TGAAGAGAAGTTAGTTTTCT+AGG + chr1_3:72219295-72219314 None:intergenic 30.0%
TAAGACTACAGATATAACCT+CGG - chr1_3:72219560-72219579 Msa0139000:CDS 30.0%
ACATGGAAGATGAACATATA+AGG - chr1_3:72219664-72219683 Msa0139000:CDS 30.0%
TAAACATAATCAAGAGACCT+AGG + chr1_3:72219772-72219791 None:intergenic 30.0%
CAAATGTATCAGGTATTTGA+TGG - chr1_3:72219821-72219840 Msa0139000:CDS 30.0%
TATCAACTTCAGATATCTGA+GGG + chr1_3:72219919-72219938 None:intergenic 30.0%
TTATCAACTTCAGATATCTG+AGG + chr1_3:72219920-72219939 None:intergenic 30.0%
CAAAAGAAAAGCCTTTCTAA+GGG + chr1_3:72219969-72219988 None:intergenic 30.0%
TTACTGCTTTGATATTTGGA+AGG - chr1_3:72220047-72220066 Msa0139000:intron 30.0%
AGAAAAACCAAGAACCTAAA+AGG + chr1_3:72220082-72220101 None:intergenic 30.0%
!! TATTAGGTTGAAAGAGGATA+AGG - chr1_3:72220166-72220185 Msa0139000:intron 30.0%
GAAGTCAGTTAAACAAACAA+AGG + chr1_3:72220401-72220420 None:intergenic 30.0%
ACTTCTAATATGCTTCTTTC+AGG - chr1_3:72220416-72220435 Msa0139000:intron 30.0%
!! ATTTAGTTATGGAGGCATTA+CGG - chr1_3:72220824-72220843 Msa0139000:intron 30.0%
AAATAAATGTCGTGTCATAG+TGG + chr1_3:72221213-72221232 None:intergenic 30.0%
TGGATGATATAGATGCCAAT+TGG - chr1_3:72218733-72218752 Msa0139000:CDS 35.0%
GGATGATATAGATGCCAATT+GGG - chr1_3:72218734-72218753 Msa0139000:CDS 35.0%
ATGGGTTTCTTTCTTTCTCT+TGG - chr1_3:72218761-72218780 Msa0139000:CDS 35.0%
!!! AGAAGTTAGTTTTCTAGGCA+TGG + chr1_3:72219290-72219309 None:intergenic 35.0%
TCAATGTGACTGAAGAACTT+AGG - chr1_3:72219312-72219331 Msa0139000:intron 35.0%
CAATGTGACTGAAGAACTTA+GGG - chr1_3:72219313-72219332 Msa0139000:intron 35.0%
GCGTTTAATTATTCTGGTGT+AGG - chr1_3:72219533-72219552 Msa0139000:CDS 35.0%
! AGATGATTTGTCATCTCATC+TGG - chr1_3:72219689-72219708 Msa0139000:CDS 35.0%
! GATGATTTGTCATCTCATCT+GGG - chr1_3:72219690-72219709 Msa0139000:CDS 35.0%
! CTAAACCAAGTGCCTTTTAT+GGG - chr1_3:72219730-72219749 Msa0139000:intron 35.0%
! TAAACCAAGTGCCTTTTATG+GGG - chr1_3:72219731-72219750 Msa0139000:intron 35.0%
AAAGCTCATTACCCCATAAA+AGG + chr1_3:72219745-72219764 None:intergenic 35.0%
! TATCAGGTATTTGATGGTCA+CGG - chr1_3:72219827-72219846 Msa0139000:CDS 35.0%
CCAAAAGAAAAGCCTTTCTA+AGG + chr1_3:72219970-72219989 None:intergenic 35.0%
! CCTTAGAAAGGCTTTTCTTT+TGG - chr1_3:72219967-72219986 Msa0139000:CDS 35.0%
GCTCTTACTGCTTTGATATT+TGG - chr1_3:72220043-72220062 Msa0139000:intron 35.0%
TGCTTTGATATTTGGAAGGT+AGG - chr1_3:72220051-72220070 Msa0139000:intron 35.0%
AAACCAAGAACCTAAAAGGA+TGG + chr1_3:72220078-72220097 None:intergenic 35.0%
CATTAGATATGGTTCGTGAT+TGG - chr1_3:72220274-72220293 Msa0139000:intron 35.0%
TGTATGACACTGTATGATCT+AGG - chr1_3:72220303-72220322 Msa0139000:intron 35.0%
TCTGGTTGTTGTATTAGCTA+TGG - chr1_3:72220360-72220379 Msa0139000:intron 35.0%
TTGTTGTATTAGCTATGGAG+AGG - chr1_3:72220365-72220384 Msa0139000:intron 35.0%
TCAGTTAAACAAACAAAGGG+AGG + chr1_3:72220397-72220416 None:intergenic 35.0%
ATGATCTTGAGACATGTCAA+TGG + chr1_3:72220500-72220519 None:intergenic 35.0%
TTGACATGTCTCAAGATCAT+AGG - chr1_3:72220500-72220519 Msa0139000:intron 35.0%
GTTGAGGATGGTTATCTTAA+TGG - chr1_3:72220571-72220590 Msa0139000:intron 35.0%
!! CATCTAATAAAGTGTTGTGG+AGG - chr1_3:72221029-72221048 Msa0139000:exon 35.0%
!! TTTTTGACTGCTTCAGGTTT+AGG - chr1_3:72221064-72221083 Msa0139000:five_prime_UTR 35.0%
CAGACAACGTGAAAAAATGA+TGG + chr1_3:72221105-72221124 None:intergenic 35.0%
TAGATGCCAATTGGGTTTGA+TGG - chr1_3:72218742-72218761 Msa0139000:CDS 40.0%
AGATGCCAATTGGGTTTGAT+GGG - chr1_3:72218743-72218762 Msa0139000:CDS 40.0%
AGAAACCCATCAAACCCAAT+TGG + chr1_3:72218751-72218770 None:intergenic 40.0%
!!! TGACTTCTATTTTGGGATCG+AGG - chr1_3:72218817-72218836 Msa0139000:CDS 40.0%
GAGGTTTGATATGTGTGTGA+TGG - chr1_3:72219083-72219102 Msa0139000:CDS 40.0%
AGCAGATATGTCATCCTTCT+TGG + chr1_3:72219127-72219146 None:intergenic 40.0%
GCACATAACCTCAACAATGA+AGG + chr1_3:72219229-72219248 None:intergenic 40.0%
TCATCTTCCATGTATCTACG+TGG + chr1_3:72219657-72219676 None:intergenic 40.0%
!! CCATAAAAGGCACTTGGTTT+AGG + chr1_3:72219732-72219751 None:intergenic 40.0%
! CCTAAACCAAGTGCCTTTTA+TGG - chr1_3:72219729-72219748 Msa0139000:intron 40.0%
!! ATTACCCCATAAAAGGCACT+TGG + chr1_3:72219738-72219757 None:intergenic 40.0%
!!! GGTAATGAGCTTTTTCACCT+AGG - chr1_3:72219752-72219771 Msa0139000:intron 40.0%
! TGAGCTTTGGCAAATGTATC+AGG - chr1_3:72219811-72219830 Msa0139000:CDS 40.0%
GGTAGAGAATTCCCTTAGAA+AGG - chr1_3:72219955-72219974 Msa0139000:CDS 40.0%
AGCAATGTGAACACTTCATC+AGG - chr1_3:72220013-72220032 Msa0139000:intron 40.0%
GCAATGTGAACACTTCATCA+GGG - chr1_3:72220014-72220033 Msa0139000:intron 40.0%
TATCAAAGCAGTAAGAGCTG+TGG + chr1_3:72220041-72220060 None:intergenic 40.0%
!! GGGTACTATTAGGTTGAAAG+AGG - chr1_3:72220160-72220179 Msa0139000:intron 40.0%
ATTCTTCTACCTAGAGGGAT+TGG + chr1_3:72220332-72220351 None:intergenic 40.0%
TATTAGCTATGGAGAGGAGA+AGG - chr1_3:72220371-72220390 Msa0139000:intron 40.0%
TGCTTCTTTCAGGCTTCTAA+TGG - chr1_3:72220426-72220445 Msa0139000:intron 40.0%
TTCTTTCAGGCTTCTAATGG+TGG - chr1_3:72220429-72220448 Msa0139000:intron 40.0%
AAAATTGGGTGGCTATGTTG+AGG - chr1_3:72220555-72220574 Msa0139000:intron 40.0%
!! TTATCAGTTACGAGAGCACT+AGG - chr1_3:72220598-72220617 Msa0139000:intron 40.0%
!! TATCAGTTACGAGAGCACTA+GGG - chr1_3:72220599-72220618 Msa0139000:intron 40.0%
AACTCAGGATCTGCAATCAA+AGG + chr1_3:72220661-72220680 None:intergenic 40.0%
GATGACGAATTCCTCATCAT+AGG - chr1_3:72220703-72220722 Msa0139000:intron 40.0%
TCCTCAAACCTTTACGAACA+AGG + chr1_3:72220774-72220793 None:intergenic 40.0%
TTGTTCGTAAAGGTTTGAGG+AGG - chr1_3:72220773-72220792 Msa0139000:intron 40.0%
ACAGCATCTCAATTTCCGTT+GGG + chr1_3:72220932-72220951 None:intergenic 40.0%
TACAGCATCTCAATTTCCGT+TGG + chr1_3:72220933-72220952 None:intergenic 40.0%
TTGTAGCTTGAGAAGCTTGT+TGG - chr1_3:72220972-72220991 Msa0139000:CDS 40.0%
!!! AAGCTGTTTTTGACTGCTTC+AGG - chr1_3:72221058-72221077 Msa0139000:five_prime_UTR 40.0%
TCTGTTGATGTACATATCCC+AGG - chr1_3:72221121-72221140 Msa0139000:five_prime_UTR 40.0%
CTGTTGATGTACATATCCCA+GGG - chr1_3:72221122-72221141 Msa0139000:five_prime_UTR 40.0%
AAAAATGGTGGCTGAAGCAG+AGG - chr1_3:72218508-72218527 Msa0139000:three_prime_UTR 45.0%
TGTTGTGTGTCAACAAAGCG+TGG - chr1_3:72218532-72218551 Msa0139000:exon 45.0%
GGGAGCAATAATCACGAGAT+CGG - chr1_3:72218578-72218597 Msa0139000:CDS 45.0%
AGGATGACATATCTGCTAGC+AGG - chr1_3:72219130-72219149 Msa0139000:intron 45.0%
ACAGATATAACCTCGGAAGC+TGG - chr1_3:72219567-72219586 Msa0139000:CDS 45.0%
CTTATATACGCTGCAGCTTC+AGG + chr1_3:72219857-72219876 None:intergenic 45.0%
! TCTTTTGGCAGACTCAGCTT+TGG - chr1_3:72219982-72220001 Msa0139000:intron 45.0%
! GAAGGTAGGTCCATCCTTTT+AGG - chr1_3:72220065-72220084 Msa0139000:intron 45.0%
!!! GGTCCATCCTTTTAGGTTCT+TGG - chr1_3:72220072-72220091 Msa0139000:intron 45.0%
CTTCTAATGGTGGCAAATGC+CGG - chr1_3:72220439-72220458 Msa0139000:intron 45.0%
CTTTACGACTGAGAACTGCT+CGG + chr1_3:72220471-72220490 None:intergenic 45.0%
AGTTCTCAGTCGTAAAGGAG+AGG - chr1_3:72220474-72220493 Msa0139000:intron 45.0%
GGCCTATTTATCCATCAGAG+CGG - chr1_3:72220521-72220540 Msa0139000:intron 45.0%
! CTCCGCTCTGATGGATAAAT+AGG + chr1_3:72220526-72220545 None:intergenic 45.0%
CTATTTATCCATCAGAGCGG+AGG - chr1_3:72220524-72220543 Msa0139000:intron 45.0%
! CGGAGGCGAGTTGAAAAATT+GGG - chr1_3:72220541-72220560 Msa0139000:intron 45.0%
! AGGCGAGTTGAAAAATTGGG+TGG - chr1_3:72220544-72220563 Msa0139000:intron 45.0%
!! ATCAGTTACGAGAGCACTAG+GGG - chr1_3:72220600-72220619 Msa0139000:intron 45.0%
ACTGGGACATGAAGTTACCT+AGG - chr1_3:72220623-72220642 Msa0139000:intron 45.0%
CTGGGACATGAAGTTACCTA+GGG - chr1_3:72220624-72220643 Msa0139000:intron 45.0%
TGGGACATGAAGTTACCTAG+GGG - chr1_3:72220625-72220644 Msa0139000:intron 45.0%
GGATCTGCAATCAAAGGTGA+GGG + chr1_3:72220655-72220674 None:intergenic 45.0%
AGGATCTGCAATCAAAGGTG+AGG + chr1_3:72220656-72220675 None:intergenic 45.0%
CATCCTCTGTTAGAACCACT+TGG + chr1_3:72220687-72220706 None:intergenic 45.0%
TTCCTCATCATAGGATGCGA+CGG - chr1_3:72220712-72220731 Msa0139000:intron 45.0%
!! GCTGTTAGCCTTGTTCGTAA+AGG - chr1_3:72220763-72220782 Msa0139000:intron 45.0%
! GCCTTGTTCGTAAAGGTTTG+AGG - chr1_3:72220770-72220789 Msa0139000:intron 45.0%
TGCCTCCATAACTAAATCCC+TGG + chr1_3:72220821-72220840 None:intergenic 45.0%
CAGCATCTCAATTTCCGTTG+GGG + chr1_3:72220931-72220950 None:intergenic 45.0%
!! AGCTTGAGAAGCTTGTTGGA+AGG - chr1_3:72220976-72220995 Msa0139000:CDS 45.0%
TGTACATATCCCAGGGTTAG+AGG - chr1_3:72221129-72221148 Msa0139000:five_prime_UTR 45.0%
AGATTCAAGACCAGCTTCCG+AGG + chr1_3:72219580-72219599 None:intergenic 50.0%
!! GGAAGCTGGTCTTGAATCTG+CGG - chr1_3:72219581-72219600 Msa0139000:CDS 50.0%
AAACTACCGGAACGGATGGA+GGG + chr1_3:72219621-72219640 None:intergenic 50.0%
AAAACTACCGGAACGGATGG+AGG + chr1_3:72219622-72219641 None:intergenic 50.0%
TGTCGGCAAAACTACCGGAA+CGG + chr1_3:72219629-72219648 None:intergenic 50.0%
!! TCCGGTAGTTTTGCCGACAT+TGG - chr1_3:72219630-72219649 Msa0139000:CDS 50.0%
CCCAATGTCGGCAAAACTAC+CGG + chr1_3:72219634-72219653 None:intergenic 50.0%
!! CCGGTAGTTTTGCCGACATT+GGG - chr1_3:72219631-72219650 Msa0139000:CDS 50.0%
GTATCTACGTGGCCCAATGT+CGG + chr1_3:72219646-72219665 None:intergenic 50.0%
CATTGGGCCACGTAGATACA+TGG - chr1_3:72219647-72219666 Msa0139000:CDS 50.0%
! CAGGTATTTGATGGTCACGG+AGG - chr1_3:72219830-72219849 Msa0139000:CDS 50.0%
TCTAGGTAGCCAATCCCTCT+AGG - chr1_3:72220320-72220339 Msa0139000:intron 50.0%
CGAGCAGTTCTCAGTCGTAA+AGG - chr1_3:72220469-72220488 Msa0139000:intron 50.0%
! GCGGAGGCGAGTTGAAAAAT+TGG - chr1_3:72220540-72220559 Msa0139000:intron 50.0%
TTGGGTGGCTATGTTGAGGA+TGG - chr1_3:72220559-72220578 Msa0139000:intron 50.0%
AGATCCTGAGTTCCACCAAG+TGG - chr1_3:72220669-72220688 Msa0139000:intron 50.0%
! AGAACCACTTGGTGGAACTC+AGG + chr1_3:72220676-72220695 None:intergenic 50.0%
CCTCTGTTAGAACCACTTGG+TGG + chr1_3:72220684-72220703 None:intergenic 50.0%
!! CCACCAAGTGGTTCTAACAG+AGG - chr1_3:72220681-72220700 Msa0139000:intron 50.0%
GTGCGCCAGGGATTTAGTTA+TGG - chr1_3:72220813-72220832 Msa0139000:intron 50.0%
CGCCAGGGATTTAGTTATGG+AGG - chr1_3:72220816-72220835 Msa0139000:intron 50.0%
CATCTCAATTTCCGTTGGGG+AGG + chr1_3:72220928-72220947 None:intergenic 50.0%
TACAAAGAGCCTCTGCAGAG+AGG + chr1_3:72220957-72220976 None:intergenic 50.0%
! ACTGCTTCAGGTTTAGGCGT+AGG - chr1_3:72221070-72221089 Msa0139000:five_prime_UTR 50.0%
CATATCCCAGGGTTAGAGGA+TGG - chr1_3:72221133-72221152 Msa0139000:five_prime_UTR 50.0%
TTTGTCCCCTCCATCCGTTC+CGG - chr1_3:72219612-72219631 Msa0139000:CDS 55.0%
AACTACCGGAACGGATGGAG+GGG + chr1_3:72219620-72219639 None:intergenic 55.0%
GGCAAAACTACCGGAACGGA+TGG + chr1_3:72219625-72219644 None:intergenic 55.0%
!! TTACGAGAGCACTAGGGGAC+TGG - chr1_3:72220605-72220624 Msa0139000:intron 55.0%
!! TACGAGAGCACTAGGGGACT+GGG - chr1_3:72220606-72220625 Msa0139000:intron 55.0%
!! AAAGGTGAGGGAGTACCCCT+AGG + chr1_3:72220643-72220662 None:intergenic 55.0%
TGCCGTCGCATCCTATGATG+AGG + chr1_3:72220717-72220736 None:intergenic 55.0%
TCATAGGATGCGACGGCATC+TGG - chr1_3:72220719-72220738 Msa0139000:intron 55.0%
CATAGGATGCGACGGCATCT+GGG - chr1_3:72220720-72220739 Msa0139000:intron 55.0%
AATCCCTGGCGCACTTCTCT+GGG + chr1_3:72220807-72220826 None:intergenic 55.0%
AAATCCCTGGCGCACTTCTC+TGG + chr1_3:72220808-72220827 None:intergenic 55.0%
CTCTGACTCCCCATGGTCAA+GGG + chr1_3:72220896-72220915 None:intergenic 55.0%
CTCAATTTCCGTTGGGGAGG+TGG + chr1_3:72220925-72220944 None:intergenic 55.0%
ATGCTGTAGCCTCTCTGCAG+AGG - chr1_3:72220945-72220964 Msa0139000:CDS 55.0%
ATCCCAGGGTTAGAGGATGG+TGG - chr1_3:72221136-72221155 Msa0139000:five_prime_UTR 55.0%
CACCACCATCCTCTAACCCT+GGG + chr1_3:72221141-72221160 None:intergenic 55.0%
ACACCACCATCCTCTAACCC+TGG + chr1_3:72221142-72221161 None:intergenic 55.0%
GAGAACTGCTCGGCAGTCAC+CGG + chr1_3:72220461-72220480 None:intergenic 60.0%
TCAACTCGCCTCCGCTCTGA+TGG + chr1_3:72220535-72220554 None:intergenic 60.0%
! ATGACCCAGAGAAGTGCGCC+AGG - chr1_3:72220800-72220819 Msa0139000:intron 60.0%
! TGACCCAGAGAAGTGCGCCA+GGG - chr1_3:72220801-72220820 Msa0139000:intron 60.0%
TGCCTCTCCTCCCTTGACCA+TGG - chr1_3:72220883-72220902 Msa0139000:CDS 60.0%
GCCTCTCCTCCCTTGACCAT+GGG - chr1_3:72220884-72220903 Msa0139000:CDS 60.0%
CCTCTCCTCCCTTGACCATG+GGG - chr1_3:72220885-72220904 Msa0139000:CDS 60.0%
TGACTCCCCATGGTCAAGGG+AGG + chr1_3:72220893-72220912 None:intergenic 60.0%
GCTCTGACTCCCCATGGTCA+AGG + chr1_3:72220897-72220916 None:intergenic 60.0%
!! GTGATGGCTCTGACTCCCCA+TGG + chr1_3:72220903-72220922 None:intergenic 60.0%
AGCCATCACCACCTCCCCAA+CGG - chr1_3:72220914-72220933 Msa0139000:CDS 60.0%
TTCCGTTGGGGAGGTGGTGA+TGG + chr1_3:72220919-72220938 None:intergenic 60.0%
CCCCATGGTCAAGGGAGGAG+AGG + chr1_3:72220888-72220907 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 72218267 72221282 72218267 ID=Msa0139000;Name=Msa0139000
chr1_3 mRNA 72218267 72221282 72218267 ID=Msa0139000-mRNA-1;Parent=Msa0139000;Name=Msa0139000-mRNA-1;_AED=0.02;_eAED=0.02;_QI=245|1|1|1|1|1|4|268|390
chr1_3 exon 72218267 72219111 72218267 ID=Msa0139000-mRNA-1:exon:25239;Parent=Msa0139000-mRNA-1
chr1_3 exon 72219481 72219716 72219481 ID=Msa0139000-mRNA-1:exon:25238;Parent=Msa0139000-mRNA-1
chr1_3 exon 72219797 72219994 72219797 ID=Msa0139000-mRNA-1:exon:25237;Parent=Msa0139000-mRNA-1
chr1_3 exon 72220876 72221282 72220876 ID=Msa0139000-mRNA-1:exon:25236;Parent=Msa0139000-mRNA-1
chr1_3 five_prime_UTR 72221038 72221282 72221038 ID=Msa0139000-mRNA-1:five_prime_utr;Parent=Msa0139000-mRNA-1
chr1_3 CDS 72220876 72221037 72220876 ID=Msa0139000-mRNA-1:cds;Parent=Msa0139000-mRNA-1
chr1_3 CDS 72219797 72219994 72219797 ID=Msa0139000-mRNA-1:cds;Parent=Msa0139000-mRNA-1
chr1_3 CDS 72219481 72219716 72219481 ID=Msa0139000-mRNA-1:cds;Parent=Msa0139000-mRNA-1
chr1_3 CDS 72218535 72219111 72218535 ID=Msa0139000-mRNA-1:cds;Parent=Msa0139000-mRNA-1
chr1_3 three_prime_UTR 72218267 72218534 72218267 ID=Msa0139000-mRNA-1:three_prime_utr;Parent=Msa0139000-mRNA-1
Gene Sequence

>Msa0139000

ATGGTGGCTGAAGCAGAGGTTGTTGTGTGTCAACAAAGCGTGGATGTGAAGTATTTTCCGAATAAAGGGAGCAATAATCACGAGATCGGTGATGTAGATTCGAATTTTGATCGAGTTCGTGTTTCTGAATCAGTTTCTGCTGAGTTACTTACTACAAAAGAAGATGTTAAGACTACAGATATAACCTCGGAAGCTGGTCTTGAATCTGCGGTTCTGCAATTTGTCCCCTCCATCCGTTCCGGTAGTTTTGCCGACATTGGGCCACGTAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCATCTCATCTGGGATCACAATACAATTTTCCTAAACCAAGTGCCTTTTATGGGGTATTTGATGGTCACGGAGGACCTGAAGCTGCAGCGTATATAAGAAAAAATGTTCTAAAATTCTTCTTTGAGGATGTCAATTTCCCTCAGATATCTGAAGTTGATAATGTATTTTTACAAGAGGTAGAGAATTCCCTTAGAAAGGCTTTTCTTTTGGCAGACTCAGCTTTGGCTGATGATAGCAATGTGAACACTTCATCAGGGACCACAGCTCTTACTGCTTTGATATTTGGAAGGCTTCTAATGGTGGCAAATGCCGGTGACTGCCGAGCAGTTCTCAGTCGTAAAGGAGAGGCCATTGACATGTCTCAAGATCATAGGCCTATTTATCCATCAGAGCGGAGGCGAGTTGAAAAATTGGGTGGCTATGTTGAGGATGGTTATCTTAATGGCGTTTTATCAGTTACGAGAGCACTAGGGGACTGGGACATGAAGTTACCTAGGGGTACTCCCTCACCTTTGATTGCAGATCCTGAGTTCCACCAAGTGGTTCTAACAGAGGATGACGAATTCCTCATCATAGGATGCGACGGCATCTGGGATGTGATGACAAGTCAGCATGCTGTTAGCCTTGTTCGTAAAGGTTTGAGGAGGCATGATGACCCAGAGAAGTGCGCCAGGGATTTAGTTATGGAGGCATTACGGCTCAACACATTTGACAATCTTACAGTGATCATCATATGCCTCTCCTCCCTTGACCATGGGGAGTCAGAGCCATCACCACCTCCCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGAAGCTTGTTGGAAGGCAATGCTAGCAACTGA
Protein sequence

>Msa0139000

MVAEAEVVVCQQSVDVKYFPNKGSNNHEIGDVDSNFDRVRVSESVSAELLTTKEDVKTTDITSEAGLESAVLQFVPSIRSGSFADIGPRRYMEDEHIRIDDLSSHLGSQYNFPKPSAFYGVFDGHGGPEAAAYIRKNVLKFFFEDVNFPQISEVDNVFLQEVENSLRKAFLLADSALADDSNVNTSSGTTALTALIFGRLLMVANAGDCRAVLSRKGEAIDMSQDHRPIYPSERRRVEKLGGYVEDGYLNGVLSVTRALGDWDMKLPRGTPSPLIADPEFHQVVLTEDDEFLIIGCDGIWDVMTSQHAVSLVRKGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIICLSSLDHGESEPSPPPQRKLRCCSLSAEALCSLRSLLEGNASN*