AlfalfaGEDB | Msa0982510

M. sativa cultivar zhongmu-4 / Msa0982510

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0040450	Msa0982510	0.808335	3.257316e-50	-8.615850e-47
Msa0191250	Msa0982510	0.810748	9.879527e-51	-8.615850e-47
Msa0357020	Msa0982510	0.813636	2.315186e-51	-8.615850e-47
Msa0369850	Msa0982510	0.804573	2.025016e-49	-8.615850e-47
Msa0484780	Msa0982510	0.807421	5.095617e-50	-8.615850e-47
Msa0503060	Msa0982510	0.818097	2.340996e-52	-8.615850e-47
Msa0621800	Msa0982510	0.934720	2.605904e-96	-8.615850e-47
Msa0693380	Msa0982510	0.815098	1.100297e-51	-8.615850e-47
Msa0737570	Msa0982510	0.800029	1.745445e-48	-8.615850e-47
Msa0795670	Msa0982510	0.829349	5.409541e-55	-8.615850e-47

Showing 1 to 10 of 18 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 8 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAAGAAGACAAAGGATG+AGG	0.516251	6_4:+22200427	Msa0982510:CDS
AAGTAGAAGGAAGAAGACAA+AGG	0.649388	6_4:+22200421	Msa0982510:CDS
GACTGAGGAAGCCCTAAAGA+GGG	0.617145	6_4:+22200388	Msa0982510:CDS
GACTTACACTGATGTGACTG+AGG	0.669624	6_4:+22200373	Msa0982510:CDS
GGGAGAAACACAAAAGTAGA+AGG	0.433808	6_4:+22200408	Msa0982510:CDS
TGACTGAGGAAGCCCTAAAG+AGG	0.599684	6_4:+22200387	Msa0982510:CDS
TGATGCTGCTGAAACTTCTC+TGG	0.426565	6_4:-22200474	None:intergenic
TTTGTGTTTCTCCCTCTTTA+GGG	0.270466	6_4:-22200399	None:intergenic

Showing 1 to 8 of 8 entries

Previous1Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTGTGTTTCTCCCTCTTTA+GGG	-	chr6_4:22200402-22200421	None:intergenic	35.0%
AAGTAGAAGGAAGAAGACAA+AGG	+	chr6_4:22200421-22200440	Msa0982510:CDS	35.0%
TTTGTGTTTCTCCCTCTTTA+GGG	-	chr6_4:22200402-22200421	None:intergenic	35.0%
AAGTAGAAGGAAGAAGACAA+AGG	+	chr6_4:22200421-22200440	Msa0982510:CDS	35.0%
GGGAGAAACACAAAAGTAGA+AGG	+	chr6_4:22200408-22200427	Msa0982510:CDS	40.0%
AAGGAAGAAGACAAAGGATG+AGG	+	chr6_4:22200427-22200446	Msa0982510:CDS	40.0%
GGGAGAAACACAAAAGTAGA+AGG	+	chr6_4:22200408-22200427	Msa0982510:CDS	40.0%
AAGGAAGAAGACAAAGGATG+AGG	+	chr6_4:22200427-22200446	Msa0982510:CDS	40.0%
GACTTACACTGATGTGACTG+AGG	+	chr6_4:22200373-22200392	Msa0982510:CDS	45.0%
TGATGCTGCTGAAACTTCTC+TGG	-	chr6_4:22200477-22200496	None:intergenic	45.0%

Showing 1 to 10 of 18 entries

Previous1 2Next

Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	22200368	22200511	22200368	ID=Msa0982510;Name=Msa0982510
chr6_4	mRNA	22200368	22200511	22200368	ID=Msa0982510-mRNA-1;Parent=Msa0982510;Name=Msa0982510-mRNA-1;_AED=0.49;_eAED=0.51;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|47
chr6_4	exon	22200368	22200511	22200368	ID=Msa0982510-mRNA-1:exon:6991;Parent=Msa0982510-mRNA-1
chr6_4	CDS	22200368	22200511	22200368	ID=Msa0982510-mRNA-1:cds;Parent=Msa0982510-mRNA-1

Gene Sequence	>Msa0982510 ATGAAGACTTACACTGATGTGACTGAGGAAGCCCTAAAGAGGGAGAAACACAAAAGTAGAAGGAAGAAGACAAAGGATGAGGAAGAAGCTGCTAAAGCTGTTTGTTCCAGAGAAGTTTCAGCAGCATCATGTGTTTACTTGTAA
Protein sequence	>Msa0982510 MKTYTDVTEEALKREKHKSRRKKTKDEEEAAKAVCSREVSAASCVYL*