AlfalfaGEDB | Msa0737570

M. sativa cultivar zhongmu-4 / Msa0737570

KEGG: -
GO: GO:0000018 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006282 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0010558 GO:0010569 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0046686 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1902679 GO:1903506 GO:1903507 GO:1905348 GO:1990904 GO:2000112 GO:2000113 GO:2000779 GO:2001020 GO:2001141
PFAM: PF05605.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737570	XP_003616411.1	95.807	1121	30	1	1	1121	1	1104	0.0	2229

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737570	sp\|Q8VZ79\|IDN2_ARATH	50.965	622	285	7	504	1121	24	629	0.0	611
Msa0737570	sp\|Q8VZ79\|IDN2_ARATH	51.042	96	47	0	264	359	24	119	2.39e-22	107
Msa0737570	sp\|Q8VZ79\|IDN2_ARATH	40.458	131	67	4	131	256	24	148	4.51e-18	93.6
Msa0737570	sp\|Q8VZ79\|IDN2_ARATH	56.962	79	31	2	25	102	29	105	7.16e-17	89.7
Msa0737570	sp\|Q8VZ79\|IDN2_ARATH	50.000	86	41	1	388	473	27	110	1.29e-15	85.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737570	G7KBR6	95.807	1121	30	1	1	1121	1	1104	0.0	2229

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002460	Msa0737570	0.807413	5.115980e-50	-8.615850e-47
Msa0003700	Msa0737570	0.818566	1.833059e-52	-8.615850e-47
Msa0003720	Msa0737570	0.804465	2.132835e-49	-8.615850e-47
Msa0003890	Msa0737570	0.813000	3.193410e-51	-8.615850e-47
Msa0006110	Msa0737570	0.828699	7.776295e-55	-8.615850e-47
Msa0007540	Msa0737570	0.801268	9.757612e-49	-8.615850e-47
Msa0008670	Msa0737570	0.841362	4.975537e-58	-8.615850e-47
Msa0011500	Msa0737570	0.819436	1.162319e-52	-8.615850e-47
Msa0014570	Msa0737570	0.825214	5.296384e-54	-8.615850e-47
Msa0014710	Msa0737570	0.823591	1.275311e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737570	MtrunA17_Chr5g0435301	95.807	1121	30	1	1	1121	1	1104	0.0	2229
Msa0737570	MtrunA17_Chr3g0111661	64.409	635	209	5	489	1121	5	624	0.0	809
Msa0737570	MtrunA17_Chr3g0111661	60.194	103	40	1	246	348	2	103	1.63e-30	129
Msa0737570	MtrunA17_Chr3g0111661	48.322	149	62	5	117	256	1	143	5.85e-29	124
Msa0737570	MtrunA17_Chr3g0111661	58.095	105	41	2	367	471	2	103	4.92e-28	121
Msa0737570	MtrunA17_Chr3g0111661	48.120	133	62	4	1	132	1	127	4.80e-25	112
Msa0737570	MtrunA17_Chr4g0074301	41.026	624	331	12	504	1120	19	612	1.47e-137	431
Msa0737570	MtrunA17_Chr4g0074301	41.837	98	51	3	131	223	19	115	2.98e-15	80.9
Msa0737570	MtrunA17_Chr4g0074301	37.008	127	68	4	20	135	19	144	5.93e-15	79.7
Msa0737570	MtrunA17_Chr4g0074301	40.698	86	46	2	264	345	19	103	5.00e-14	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0737570	AT3G48670.2	50.965	622	285	7	504	1121	24	629	0.0	611
Msa0737570	AT3G48670.2	51.042	96	47	0	264	359	24	119	2.43e-23	107
Msa0737570	AT3G48670.2	40.458	131	67	4	131	256	24	148	4.59e-19	93.6
Msa0737570	AT3G48670.2	56.962	79	31	2	25	102	29	105	7.28e-18	89.7
Msa0737570	AT3G48670.2	50.000	86	41	1	388	473	27	110	1.31e-16	85.5
Msa0737570	AT3G48670.1	50.965	622	285	7	504	1121	24	629	0.0	611
Msa0737570	AT3G48670.1	51.042	96	47	0	264	359	24	119	2.43e-23	107
Msa0737570	AT3G48670.1	40.458	131	67	4	131	256	24	148	4.59e-19	93.6
Msa0737570	AT3G48670.1	56.962	79	31	2	25	102	29	105	7.28e-18	89.7
Msa0737570	AT3G48670.1	50.000	86	41	1	388	473	27	110	1.31e-16	85.5

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Find 257 sgRNAs with CRISPR-Local

Find 519 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGGATTATTTGTACA+GGG	0.638147	5_1:+54825137	Msa0737570:CDS
AAAACCGGACTATGTGTACA+GGG	0.646630	5_1:+54825873	Msa0737570:CDS
AAAACGGGATTACGTGTACA+GGG	0.683449	5_1:+54826407	Msa0737570:CDS
AAAATCCGGTCTTTATGCGT+GGG	0.559938	5_1:+54827708	Msa0737570:CDS
AAAGAGAGGTATCAGAGAGA+AGG	0.584942	5_1:+54825939	Msa0737570:CDS
AAAGCCTGCAAATAAATATT+TGG	0.216840	5_1:+54827327	Msa0737570:CDS
AAAGGCAGTTTGTATGGCCA+TGG	0.546980	5_1:+54827419	Msa0737570:CDS
AAAGGCGGATCATCTGGCTT+TGG	0.475558	5_1:+54826491	Msa0737570:CDS
AAATCCTTGAACACGCTTCT+GGG	0.387945	5_1:+54825896	Msa0737570:CDS
AAATCCTTGAACATGCTTCC+GGG	0.383309	5_1:+54826430	Msa0737570:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAATTGAAGAAGAAGCTA+TGG	-	chr5_1:54823165-54823184	None:intergenic	30.0%
TGATGAAGAAAAAAAGAGGA+AGG	-	chr5_1:54823239-54823258	None:intergenic	30.0%
TGCATGATGAAGAAAAAAAG+AGG	-	chr5_1:54823243-54823262	None:intergenic	30.0%
AATATGCTGAAAACAACGTA+TGG	+	chr5_1:54823712-54823731	Msa0737570:intron	30.0%
ATATGCTGAAAACAACGTAT+GGG	+	chr5_1:54823713-54823732	Msa0737570:intron	30.0%
TCCATTGTAAGCATTAAATC+TGG	+	chr5_1:54823994-54824013	Msa0737570:intron	30.0%
TCCAGATTTAATGCTTACAA+TGG	-	chr5_1:54823998-54824017	None:intergenic	30.0%
ATTCGTGCTAAAATTCAAGT+AGG	+	chr5_1:54824081-54824100	Msa0737570:intron	30.0%
CTTTGAATATAGGATTGCAT+TGG	-	chr5_1:54824294-54824313	None:intergenic	30.0%
TACTTCACGATTGTATTTAG+TGG	+	chr5_1:54824374-54824393	Msa0737570:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	54823087	54831447	54823087	ID=Msa0737570;Name=Msa0737570
chr5_1	mRNA	54823087	54831447	54823087	ID=Msa0737570-mRNA-1;Parent=Msa0737570;Name=Msa0737570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=176\|0.81\|0.83\|1\|0.90\|0.83\|12\|268\|1180
chr5_1	exon	54823087	54823226	54823087	ID=Msa0737570-mRNA-1:exon:15413;Parent=Msa0737570-mRNA-1
chr5_1	exon	54824456	54824807	54824456	ID=Msa0737570-mRNA-1:exon:15414;Parent=Msa0737570-mRNA-1
chr5_1	exon	54824971	54825354	54824971	ID=Msa0737570-mRNA-1:exon:15415;Parent=Msa0737570-mRNA-1
chr5_1	exon	54825689	54826051	54825689	ID=Msa0737570-mRNA-1:exon:15416;Parent=Msa0737570-mRNA-1
chr5_1	exon	54826217	54826573	54826217	ID=Msa0737570-mRNA-1:exon:15417;Parent=Msa0737570-mRNA-1
chr5_1	exon	54826990	54827982	54826990	ID=Msa0737570-mRNA-1:exon:15418;Parent=Msa0737570-mRNA-1
chr5_1	exon	54828170	54828351	54828170	ID=Msa0737570-mRNA-1:exon:15419;Parent=Msa0737570-mRNA-1
chr5_1	exon	54828677	54828766	54828677	ID=Msa0737570-mRNA-1:exon:15420;Parent=Msa0737570-mRNA-1
chr5_1	exon	54829116	54829403	54829116	ID=Msa0737570-mRNA-1:exon:15421;Parent=Msa0737570-mRNA-1
chr5_1	exon	54829490	54829699	54829490	ID=Msa0737570-mRNA-1:exon:15422;Parent=Msa0737570-mRNA-1
chr5_1	exon	54830027	54830206	54830027	ID=Msa0737570-mRNA-1:exon:15423;Parent=Msa0737570-mRNA-1
chr5_1	exon	54831000	54831447	54831000	ID=Msa0737570-mRNA-1:exon:15424;Parent=Msa0737570-mRNA-1
chr5_1	five_prime_UTR	54823087	54823226	54823087	ID=Msa0737570-mRNA-1:five_prime_utr;Parent=Msa0737570-mRNA-1
chr5_1	five_prime_UTR	54824456	54824491	54824456	ID=Msa0737570-mRNA-1:five_prime_utr;Parent=Msa0737570-mRNA-1
chr5_1	CDS	54824492	54824807	54824492	ID=Msa0737570-mRNA-1:cds;Parent=Msa0737570-mRNA-1
chr5_1	CDS	54824971	54825354	54824971	ID=Msa0737570-mRNA-1:cds;Parent=Msa0737570-mRNA-1
chr5_1	CDS	54825689	54826051	54825689	ID=Msa0737570-mRNA-1:cds;Parent=Msa0737570-mRNA-1
chr5_1	CDS	54826217	54826573	54826217	ID=Msa0737570-mRNA-1:cds;Parent=Msa0737570-mRNA-1
chr5_1	CDS	54826990	54827982	54826990	ID=Msa0737570-mRNA-1:cds;Parent=Msa0737570-mRNA-1
chr5_1	CDS	54828170	54828351	54828170	ID=Msa0737570-mRNA-1:cds;Parent=Msa0737570-mRNA-1
chr5_1	CDS	54828677	54828766	54828677	ID=Msa0737570-mRNA-1:cds;Parent=Msa0737570-mRNA-1
chr5_1	CDS	54829116	54829403	54829116	ID=Msa0737570-mRNA-1:cds;Parent=Msa0737570-mRNA-1
chr5_1	CDS	54829490	54829699	54829490	ID=Msa0737570-mRNA-1:cds;Parent=Msa0737570-mRNA-1
chr5_1	CDS	54830027	54830206	54830027	ID=Msa0737570-mRNA-1:cds;Parent=Msa0737570-mRNA-1
chr5_1	CDS	54831000	54831179	54831000	ID=Msa0737570-mRNA-1:cds;Parent=Msa0737570-mRNA-1
chr5_1	three_prime_UTR	54831180	54831447	54831180	ID=Msa0737570-mRNA-1:three_prime_utr;Parent=Msa0737570-mRNA-1

Gene Sequence

>Msa0737570

ATGGCTCACTGCTCTATCAAGGATACCGGTATAGCGGAATCCCAGTTGAGTTGGTGGTATCTCGTATCATCTTACGAAGAACTCAAAACAGGGAAACAAAAGGTAAAAACCTCGGCCGAGAGTTTCAGTTGTCCGTACTGCCCCGAGAGGAAACAGGATTATAAGTTAAATGAACTCCTGAATCATGCCACCGGGATTGGTCGGAGTAGTTCAGAGAAGAGAAGTGCTAAAGAGAAGGGTAGTCATTTGGCTTTGGTAAAATATTTGGAGCAAGATCTTAACAGTAAGGATGGTGCATCGAGATCTATAGATCAAGTTACGAACACAATAAGTCCAGGACAAACAGTAATTTCTCACTGTTCTATCAAGGATACCGATATAAGTTGGTGGTATGTAGATACAGCTTATGAAGAGCTCAAAAATGGAACTCGGAATGTGAAAACCTCAGACGGGACTTTCATATGCCCGTACTGCCCTAATAGAAAACAGGATTATTTGTACAGGGAACTCCTAGAACATGCTTTTATGGTTGGTCGGAGTAGTTCAGATAAGAGAAGTGCAAGAGAAAGAGCTAATCATCTTGCTTTGTTGAAATATTTGGAAAAGGATATTACGAGTATGCCTGGACCGTCAAAGCCTGTTGATAAAGGTGATCCTGATCCTGCTGTTTGCGATATACCACAGAAATTTTTTCGTTCTAGTACAAAATTGATAAGTCAAGGACAAACTGTCACGGCTCCATGCTCTAACAAGGATACTGGTTCAAGTGATCCTCGAATAAGTTGGTTGTATGTAGATAAATTTTATCAAGAACTCAAGAATGGAAGTCTCAAAGTGAGAATCTCAGATGAGGCTTTCACTTGTCCATACTGCCCGAAAATGAAAAAACCGGACTATGTGTACAGGGAAATCCTTGAACACGCTTCTGGGGTCGGTCAGAGTAGTTCGCAAAAGAGAGGTATCAGAGAGAAGGCAACTCATCTGGCTTTAATGAAATATTTGAAACAGGATATTATATATGTGCCTGCTCCATCAAAACCTGTGATTGAAGGTGATTCTTCTGGAGCCATGATACAAAGCCGAGAAGAAAATGCGACGACTCGCTGCTCCGACAAAGATTCTGATAAAAGTGCATCTCAAATAAATTTAGGGCAATTAAAAAGAACATATGAACAGCTCAAAAAGGGGATTCAAAACGTGAGAACCTCAGATAAGACTTTCACTTGCCCATACTGCCCTAATAATAAAAGGATAAAACGGGATTACGTGTACAGGGAAATCCTTGAACATGCTTCCGGGGTGGGTTGGAGTATCTCACAAACTAGAACTGACATTGAAAAGGCGGATCATCTGGCTTTGGTCAAATATTTGAAAAAGGATCTTATAAATGTCGGTGGTCCTTCAGAACCAACGAAGAAAGGCACCATAATGTTGAACCGAGGAGTAACTGTAACAGGTCACCTCTCTGAGAAGGATGCTAATAATAGCGCATCTCAAATAAATGCGTTGTTTGTAAATAAATCCTATACAGAACTCAAGAAGGGTATTCACAAGGTCAAAACATCAGAAGATACTTTCTCATGTCCGTATTGCCCCAAGAGAAAATGCAATTATAGGTACAGCGAACTCCTTAATCATGCTTTAGGGGTAGGTCAAAGTGACGCACAAAGGAGAAGTGTATTGGAGAAGGCCAACCATCTAGCTTTAGTGAAATATTTGGAAAAGGATCTTATGACTATGAATGTGGAACGTCCGTTAAAGCCTGCAAATAAATATTTGGAAAACAATCTTATGAATGTGGAACAAAATCGAACAAAACCAGTGAATGAAAACATTCTTGTCAATTCTGAAAGGCAGTTTGTATGGCCATGGACTGGGATTGTGGTTAATATTCCCACTAGCCAAACCGAAGATGGACGATGTATTGGTGAAAGTGGTTCCAAGCTAAGGGATGAATACCGAATAAGGGGTTTTAATCCACGTAGAGTCCGAACTCTTTGGAATTCATGGGGTCACACCGGAGCTGCAGTTGTGGAATTTAATAAAAGTTGGCTAGGGTTATATAATGCATTGGCATTTGAAAGGGCGTATGAATTAGATTGTCACGGTAAAAAGGACTGGCTTTCTTATACTGAACAAAAATCCGGTCTTTATGCGTGGGTTGCCCGAGCTGATGACTACAAAGTGGACAACATAATCGGGGAGCAACTACAAAAGATGGATGTTAAAACAATACCTGAAATCATGGAGCAAGATGCTAGAAGGTTCAATAGACTCGTGCAGAGTATGCATAACATTCTTCAAGTAAAGAACAACAAGATAAAAGAAATGGAAGTAGTATGCAATGAAATTACACTTCGCATGGACATTGTGATGGGCGAAATAGACAGACTTGCTCAATCTCACAGTCAAGAGATGAAGAAAATACAGTCAAGTGCAAATCAACACTTTCAGAGTGTTTTGAATGGTCATGAAAGGCTTAAGTTGCAACTGGAATCTCAGAAAAGAGAACTTGAGTTGCGAAGAATTGAACTGGAAAAACGTGAGGCACGTAATGAAAGTGAAAGGAAAAAGTTGGATGAAGAGATTAACAAGACTGCAACGAAAAATCACTTTCTTCAAATGGCTGCTTTGGAGCAACAAAAAGCTGGTGAAAATGTTTTGAAACTTGCCGCAGATCAAAAGCGGCAAAAAGAACAACTCCATGCCAAAATCATCCAGCTTGAAAAACAACTAAATGTGAAACAAAAACTGGAATTGGAGATTCAGCAACTAAAAGGAAAACTAAATGTCATGAAGCACATGGAAGATGATGGAGAACTTGATGTTCTGAATATGATGGATGCCTTACATATAGATTTAAGAGAGAAGGAACAGTCACTTCGAGACATGGACGCATTGAACCAAACTCTGATCATTAAAGAGCGTAAGAGCAATGATGAACTGCAGGAAGCTCGAAAGGAATTGATTACTACCATTAAAGAGATGCCAAGTTGTGCCGATATTCGTGTGAAGAGAATGGGGGAGCTAGACTTTAGACCATTTCTAGAAGCTATGAAGAAAAAATATAATGAAGATGTTGCAGAAGATAGAGCTTCTGAACTGTGTTCGTTGTGGGAAGAGTACCTGAAGGACCCTGACTGGCATCCATTTAAAATTTCTACAATCCAAGGGAAACATCAGGAAGCTATAGACGATGAAGATGAAAAGCTGAATGAACTGAGAAACGAGATGGGCGAAGAAGTTTACAAAGCTGTGGTGGCAGCATTGAAAGAGATAAATGAATATAATCCAAGTGGGCGGTACATAACCTCGGAATTATGGAATTACGCAGAGGGAAAGAGAGCGACTTTGCAAGAAGGAGAATCATCACACATTGTTTTCTCGAAGGGAATCGTGCGGTTGAACATATTTAGGAAATACATCATATATTTGGCTTCACTTGATACTTCAAGCTTCTGTGGAGGTCTTTCTATCGTCACTGCTTTCATAACCACAAGCTTTGTGCTTATGCTTATTCATTTAGGTGGAGTTCGAAGTTAA

Protein sequence

>Msa0737570

MAHCSIKDTGIAESQLSWWYLVSSYEELKTGKQKVKTSAESFSCPYCPERKQDYKLNELLNHATGIGRSSSEKRSAKEKGSHLALVKYLEQDLNSKDGASRSIDQVTNTISPGQTVISHCSIKDTDISWWYVDTAYEELKNGTRNVKTSDGTFICPYCPNRKQDYLYRELLEHAFMVGRSSSDKRSARERANHLALLKYLEKDITSMPGPSKPVDKGDPDPAVCDIPQKFFRSSTKLISQGQTVTAPCSNKDTGSSDPRISWLYVDKFYQELKNGSLKVRISDEAFTCPYCPKMKKPDYVYREILEHASGVGQSSSQKRGIREKATHLALMKYLKQDIIYVPAPSKPVIEGDSSGAMIQSREENATTRCSDKDSDKSASQINLGQLKRTYEQLKKGIQNVRTSDKTFTCPYCPNNKRIKRDYVYREILEHASGVGWSISQTRTDIEKADHLALVKYLKKDLINVGGPSEPTKKGTIMLNRGVTVTGHLSEKDANNSASQINALFVNKSYTELKKGIHKVKTSEDTFSCPYCPKRKCNYRYSELLNHALGVGQSDAQRRSVLEKANHLALVKYLEKDLMTMNVERPLKPANKYLENNLMNVEQNRTKPVNENILVNSERQFVWPWTGIVVNIPTSQTEDGRCIGESGSKLRDEYRIRGFNPRRVRTLWNSWGHTGAAVVEFNKSWLGLYNALAFERAYELDCHGKKDWLSYTEQKSGLYAWVARADDYKVDNIIGEQLQKMDVKTIPEIMEQDARRFNRLVQSMHNILQVKNNKIKEMEVVCNEITLRMDIVMGEIDRLAQSHSQEMKKIQSSANQHFQSVLNGHERLKLQLESQKRELELRRIELEKREARNESERKKLDEEINKTATKNHFLQMAALEQQKAGENVLKLAADQKRQKEQLHAKIIQLEKQLNVKQKLELEIQQLKGKLNVMKHMEDDGELDVLNMMDALHIDLREKEQSLRDMDALNQTLIIKERKSNDELQEARKELITTIKEMPSCADIRVKRMGELDFRPFLEAMKKKYNEDVAEDRASELCSLWEEYLKDPDWHPFKISTIQGKHQEAIDDEDEKLNELRNEMGEEVYKAVVAALKEINEYNPSGRYITSELWNYAEGKRATLQEGESSHIVFSKGIVRLNIFRKYIIYLASLDTSSFCGGLSIVTAFITTSFVLMLIHLGGVRS*