AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1343070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343070 MtrunA17_Chr2g0298701 93.584 717 29 3 1 710 1 707 0.0 1306
Msa1343070 MtrunA17_Chr1g0207661 47.210 233 115 3 139 371 245 469 5.06e-58 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343070 AT4G29940.2 58.118 425 158 5 136 546 97 515 1.86e-155 469
Msa1343070 AT4G29940.1 58.118 425 158 5 136 546 97 515 1.89e-155 470
Msa1343070 AT3G19510.1 46.586 249 121 3 121 369 160 396 9.47e-61 217
Msa1343070 AT3G19510.2 46.586 249 121 3 121 369 160 396 9.47e-61 217

Find 145 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAAGCATCACAATCTTTA+AGG 0.134962 tig0006225:-17715 None:intergenic
CCCAAGTGTGGAGGTATTTC+TGG 0.146341 tig0006225:-22626 None:intergenic
AGGGCGTCCTTCACGGATTT+TGG 0.158407 tig0006225:-21956 None:intergenic
GATGGATAGGAAATTGAAAT+TGG 0.159981 tig0006225:-17786 None:intergenic
AAGAACAATGATAGAATAAA+AGG 0.187496 tig0006225:+21718 Msa1343070:CDS
TCCAGCATGTGGTCTTTAAA+TGG 0.227946 tig0006225:+20948 Msa1343070:CDS
ATCCTTGGTTGGCACCTTAT+TGG 0.235926 tig0006225:-19216 None:intergenic
CAAAACCAGCCTTGGTCTTC+AGG 0.247836 tig0006225:-20206 None:intergenic
CCTCCACACTTGGGAGAAAA+TGG 0.255233 tig0006225:+22635 Msa1343070:CDS
CTATCATTGTTCTTATTATT+CGG 0.255964 tig0006225:-21709 None:intergenic
TCAGTCTGTGTTTCTTCCTT+TGG 0.278404 tig0006225:-19130 None:intergenic
CTGAAATTGAAGAGAAAATA+TGG 0.293844 tig0006225:-17924 None:intergenic
AACCTGCCAAGTACTGTCTA+AGG 0.296673 tig0006225:-20294 None:intergenic
TGGCTTTCTTCCTTCCTCTC+TGG 0.343007 tig0006225:-20867 None:intergenic
AGATATTCCTTGTTCTTCTC+TGG 0.348606 tig0006225:-19448 None:intergenic
TGACTGTAAGATAGAAATAT+TGG 0.355208 tig0006225:+20238 Msa1343070:CDS
GGATTATAGTCATCGTCTTC+AGG 0.355847 tig0006225:-20846 None:intergenic
TTTCGAAAGGGCGTCCTTCA+CGG 0.358216 tig0006225:-21963 None:intergenic
AGCTACTGATTCTTCCAATA+AGG 0.369588 tig0006225:+19202 Msa1343070:CDS
AGAATAAAAGGGAATTCTTC+AGG 0.374854 tig0006225:+21730 Msa1343070:CDS
TCAAATAAAAGATTGATTGT+TGG 0.379038 tig0006225:+19242 Msa1343070:CDS
CAGAGTATAATATCATTATC+TGG 0.390452 tig0006225:-20016 None:intergenic
CTTTAAGGTTCTTGTTGTGT+TGG 0.395929 tig0006225:-17700 None:intergenic
GAAGATGAAGATTGGGGTCC+TGG 0.398942 tig0006225:+21610 Msa1343070:CDS
AGATTGAAGCAAAGATTAAC+TGG 0.399258 tig0006225:+23516 Msa1343070:CDS
GGACGCCCTTTCGAAAGAAA+TGG 0.401279 tig0006225:+21970 Msa1343070:CDS
ATGGATAGGAAATTGAAATT+GGG 0.404420 tig0006225:-17785 None:intergenic
TATCCATCATTCAATCGAAA+AGG 0.404944 tig0006225:+17801 Msa1343070:five_prime_UTR
AAGAAGTGTGAAAATGTTAC+TGG 0.405838 tig0006225:+22557 Msa1343070:CDS
ATGTTCCTATAGCTGAGTTA+AGG 0.407231 tig0006225:+23598 Msa1343070:CDS
AGTTCAGTTGGTAGTATTGA+AGG 0.418881 tig0006225:+19818 Msa1343070:CDS
CACATAGATTCTGATGAATC+CGG 0.421682 tig0006225:+21023 Msa1343070:CDS
CCGTGATGCCATTCACCAAC+TGG 0.421979 tig0006225:+19787 Msa1343070:CDS
GAGATGTCTTGATCCTCCTT+TGG 0.422829 tig0006225:+20069 Msa1343070:CDS
AGATTCCCAATGTTGATACT+AGG 0.428050 tig0006225:-17758 None:intergenic
AAACATCTCTTAATAATGAT+AGG 0.432213 tig0006225:+19315 Msa1343070:CDS
AGTGAGTGAAGATGAAGATT+GGG 0.435286 tig0006225:+21603 Msa1343070:CDS
CCCCTTAGACAGTACTTGGC+AGG 0.439188 tig0006225:+20292 Msa1343070:CDS
ATAGGAACATACATAATAGA+TGG 0.443496 tig0006225:-23585 None:intergenic
GGAGTTCAAAATTGCAGATC+GGG 0.444432 tig0006225:+23537 Msa1343070:CDS
CGATAATGCAGGTTAACAAA+TGG 0.446754 tig0006225:+22171 Msa1343070:intron
ACATGTTCCTTTGTGTTACT+CGG 0.451425 tig0006225:-19059 None:intergenic
TGTTCCTATAGCTGAGTTAA+GGG 0.455270 tig0006225:+23599 Msa1343070:CDS
TAATGAAACTATTGCAAGAA+AGG 0.457497 tig0006225:+23403 Msa1343070:CDS
AGACTCCGAGGCAGCAGAGT+TGG 0.457827 tig0006225:+23455 Msa1343070:CDS
AAGTGAGTGAAGATGAAGAT+TGG 0.458660 tig0006225:+21602 Msa1343070:CDS
AGGCAACAAACGCGCATCTT+GGG 0.460252 tig0006225:+20261 Msa1343070:CDS
GAGGCAACAAACGCGCATCT+TGG 0.466032 tig0006225:+20260 Msa1343070:CDS
AAATTCCAACTCTGCTGCCT+CGG 0.470562 tig0006225:-23460 None:intergenic
CTGGATTCTCTTAGTTCAGT+TGG 0.473153 tig0006225:+19806 Msa1343070:CDS
ATTTCCCCTTAGACAGTACT+TGG 0.477866 tig0006225:+20288 Msa1343070:CDS
AAAGTCTACATAAAACTGAT+AGG 0.478611 tig0006225:+19267 Msa1343070:CDS
GGTAATAATACATTAATGTA+TGG 0.479759 tig0006225:+23684 Msa1343070:three_prime_UTR
TTCCTCCTGAAGACCAAGGC+TGG 0.484945 tig0006225:+20201 Msa1343070:CDS
CAAGTCCCATTTCTTTCGAA+AGG 0.486339 tig0006225:-21976 None:intergenic
TATAGCTGAGTTAAGGGAAA+AGG 0.488966 tig0006225:+23605 Msa1343070:CDS
GAAAATTTATAACTTCAAAC+CGG 0.490601 tig0006225:-23739 None:intergenic
AGAACAATGATAGAATAAAA+GGG 0.492512 tig0006225:+21719 Msa1343070:CDS
GACGCCCTTTCGAAAGAAAT+GGG 0.493793 tig0006225:+21971 Msa1343070:CDS
AGTAATGCAGCATCGCCGTC+AGG 0.494282 tig0006225:-20792 None:intergenic
ACCAGAAATACCTCCACACT+TGG 0.495132 tig0006225:+22625 Msa1343070:CDS
AAGTCCCATTTCTTTCGAAA+GGG 0.495232 tig0006225:-21975 None:intergenic
CTTCTGTGTTGATGCCACCA+TGG 0.498525 tig0006225:-20887 None:intergenic
TACTAAATCAAGAAGAAGAA+TGG 0.501022 tig0006225:+20811 Msa1343070:CDS
GTACAATGAAATGAAGCAAC+CGG 0.503191 tig0006225:+23720 Msa1343070:three_prime_UTR
CTCCAGCGTAAGCATCGATA+AGG 0.509397 tig0006225:-19496 None:intergenic
TTATTTGAAGAATCCTTGGT+TGG 0.511651 tig0006225:-19227 None:intergenic
ATCCATCATTCAATCGAAAA+GGG 0.514565 tig0006225:+17802 Msa1343070:five_prime_UTR
ACGACCACATGCTATTTCCC+CGG 0.515781 tig0006225:-21042 None:intergenic
ATCGATGCTTACGCTGGAGA+AGG 0.517287 tig0006225:+19500 Msa1343070:CDS
GTCACAGTCGAGAGAAGATT+AGG 0.517689 tig0006225:+19708 Msa1343070:intron
TTCTACATCACAACATGTGC+AGG 0.518102 tig0006225:+22481 Msa1343070:CDS
CATGGCACTTAAAATGAGAA+AGG 0.518506 tig0006225:+22211 Msa1343070:CDS
TCCATTTAAAGACCACATGC+TGG 0.518896 tig0006225:-20949 None:intergenic
AAGAGAATCCAGTTGGTGAA+TGG 0.519329 tig0006225:-19795 None:intergenic
GGTCGTTAGAATAATATTCA+AGG 0.522036 tig0006225:-21001 None:intergenic
AGAGAAGATTAGGCCAGAAA+AGG 0.525646 tig0006225:+19718 Msa1343070:CDS
ACGTAAATAGATTAATATGC+GGG 0.526006 tig0006225:+19001 Msa1343070:exon
AAGGAGGATCAAGACATCTC+TGG 0.528780 tig0006225:-20066 None:intergenic
ACATAGATTCTGATGAATCC+GGG 0.537290 tig0006225:+21024 Msa1343070:CDS
ACATACCTAGTATCAACATT+GGG 0.539661 tig0006225:+17753 Msa1343070:five_prime_UTR
AAAGGAACATGTCAAGTTGA+AGG 0.541741 tig0006225:+19070 Msa1343070:CDS
GGTTCTGTCATTGCTACAGA+TGG 0.542741 tig0006225:+19839 Msa1343070:CDS
ACCTGCCAAGTACTGTCTAA+GGG 0.543897 tig0006225:-20293 None:intergenic
AACCTTATCGATGCTTACGC+TGG 0.549016 tig0006225:+19494 Msa1343070:CDS
CACATACCTAGTATCAACAT+TGG 0.553170 tig0006225:+17752 Msa1343070:five_prime_UTR
AATACTTGCAAAACCAGCCT+TGG 0.554312 tig0006225:-20214 None:intergenic
ATGCTTACGCTGGAGAAGGT+TGG 0.555448 tig0006225:+19504 Msa1343070:CDS
TATTCCTTGTTCTTCTCTGG+AGG 0.556906 tig0006225:-19445 None:intergenic
TGGAGTTCAAAATTGCAGAT+CGG 0.560560 tig0006225:+23536 Msa1343070:CDS
GAATGTTCTATGTTAGATGA+AGG 0.561374 tig0006225:+20972 Msa1343070:CDS
GAGAAGAGAAAAGGAGTCTG+AGG 0.568921 tig0006225:+21642 Msa1343070:CDS
TCTTCACTCACTTGTTCACA+AGG 0.570005 tig0006225:-21592 None:intergenic
GAAAATTATGATTCATGTGG+TGG 0.575125 tig0006225:+23802 Msa1343070:three_prime_UTR
AACATCATCACTGACCTCCA+TGG 0.580335 tig0006225:-23376 None:intergenic
TGACTATAATCCAGAGAGGA+AGG 0.581091 tig0006225:+20857 Msa1343070:CDS
GGGAAATAGCATGTGGTCGT+AGG 0.581992 tig0006225:+21045 Msa1343070:CDS
AGGAAAGGTGAGATAGATGT+TGG 0.583618 tig0006225:+19335 Msa1343070:CDS
ACAACATGTGCAGGAAGAAG+AGG 0.585587 tig0006225:+22490 Msa1343070:CDS
TCTCTTAATAATGATAGGAA+AGG 0.587020 tig0006225:+19320 Msa1343070:CDS
AATGGGACTTGATGCTGCAA+AGG 0.589378 tig0006225:+21988 Msa1343070:CDS
AATGATATTATACTCTGTGA+TGG 0.590683 tig0006225:+20022 Msa1343070:CDS
TTTGTTTAGCTTCAAGAAGG+AGG 0.591319 tig0006225:+22419 Msa1343070:intron
CAAGTAGCACAAAACACCAA+AGG 0.591492 tig0006225:+19114 Msa1343070:CDS
CAAGTAGTTCTTCCAGCATG+TGG 0.596343 tig0006225:+20937 Msa1343070:CDS
TTCCAATAAGGTGCCAACCA+AGG 0.598203 tig0006225:+19214 Msa1343070:CDS
CTGTAAGATAGAAATATTGG+AGG 0.603472 tig0006225:+20241 Msa1343070:CDS
CCAGTTGGTGAATGGCATCA+CGG 0.605629 tig0006225:-19787 None:intergenic
AAATCAAAATCTCATAAACT+CGG 0.606698 tig0006225:+19152 Msa1343070:CDS
GATAGATGTTGGTGATCAAG+AGG 0.610740 tig0006225:+19346 Msa1343070:CDS
TACGCTGGAGAAGGTTGGAA+AGG 0.611602 tig0006225:+19509 Msa1343070:CDS
CATGGTGGCATCAACACAGA+AGG 0.612139 tig0006225:+20888 Msa1343070:CDS
GAAGAAGCTGCTATTCCTGA+CGG 0.614571 tig0006225:+20777 Msa1343070:CDS
TATCACTTCTAAGAACTCAA+AGG 0.617285 tig0006225:+22457 Msa1343070:CDS
CGGAGGTTGCACAAATGTGT+CGG 0.617900 tig0006225:+19172 Msa1343070:CDS
CTGAACTAAGAGAATCCAGT+TGG 0.618760 tig0006225:-19802 None:intergenic
CTGTCTTCAGTCTCCAAAGG+AGG 0.618854 tig0006225:-20082 None:intergenic
TCACTGTCTTCAGTCTCCAA+AGG 0.619248 tig0006225:-20085 None:intergenic
CGGATTCATCAGAATCTATG+TGG 0.622262 tig0006225:-21022 None:intergenic
AGGAATTCAACAAAGATACA+AGG 0.629477 tig0006225:+19287 Msa1343070:CDS
CCTGCCAAGTACTGTCTAAG+GGG 0.632462 tig0006225:-20292 None:intergenic
GAGAGGAAGGAAGAAAGCCA+TGG 0.637015 tig0006225:+20870 Msa1343070:CDS
ACTGAGAAGTTAAATAACCA+AGG 0.637280 tig0006225:+19026 Msa1343070:CDS
CTTGGGAGAAAATGGCAACA+AGG 0.637413 tig0006225:+22643 Msa1343070:CDS
TCATGTGAAAACCTAAAACA+AGG 0.637563 tig0006225:-21763 None:intergenic
TCGTCTTCAGGATCATCTGA+CGG 0.640667 tig0006225:-20834 None:intergenic
TACGTAAATAGATTAATATG+CGG 0.644745 tig0006225:+19000 Msa1343070:exon
CCAGAAATACCTCCACACTT+GGG 0.646657 tig0006225:+22626 Msa1343070:CDS
GAGAAGGTTGGAAAGGTCAG+AGG 0.649501 tig0006225:+19516 Msa1343070:CDS
AGGAAGGAAGAAAGCCATGG+TGG 0.650653 tig0006225:+20873 Msa1343070:CDS
GTGAGTGAAGATGAAGATTG+GGG 0.652036 tig0006225:+21604 Msa1343070:CDS
AACCAGCCTTGGTCTTCAGG+AGG 0.652976 tig0006225:-20203 None:intergenic
CATAGATTCTGATGAATCCG+GGG 0.669012 tig0006225:+21025 Msa1343070:CDS
TACAAAACCGAGTAACACAA+AGG 0.669844 tig0006225:+19052 Msa1343070:CDS
GCTTCCTCCAAAATCCGTGA+AGG 0.670380 tig0006225:+21949 Msa1343070:CDS
GCAGTTCCTCCTGAAGACCA+AGG 0.671156 tig0006225:+20197 Msa1343070:intron
TCACTCACTTGTTCACAAGG+TGG 0.675741 tig0006225:-21589 None:intergenic
TGCATTTGAAGGAGACTCCG+AGG 0.681549 tig0006225:+23443 Msa1343070:CDS
TCAAAATCTCATAAACTCGG+AGG 0.684427 tig0006225:+19155 Msa1343070:CDS
ATGGAAAATTATGATTCATG+TGG 0.684751 tig0006225:+23799 Msa1343070:three_prime_UTR
TTATCTTCAGGATTCCATGG+AGG 0.700522 tig0006225:+23362 Msa1343070:intron
GAATCCGGGGAAATAGCATG+TGG 0.711313 tig0006225:+21038 Msa1343070:CDS
AATTCAACAAAGATACAAGG+AGG 0.723347 tig0006225:+19290 Msa1343070:CDS
ACGATGACTATAATCCAGAG+AGG 0.733914 tig0006225:+20853 Msa1343070:CDS
TACGCCTCCAGAGAAGAACA+AGG 0.736747 tig0006225:+19441 Msa1343070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTGATTTAAAACAAA+AGG - tig0006225:18056-18075 None:intergenic 10.0%
!!! GAAAAAACATTTATTATTTT+TGG - tig0006225:20731-20750 None:intergenic 10.0%
!! ATAAATGATCATATAAATAA+AGG + tig0006225:21215-21234 Msa1343070:intron 10.0%
!!! TCTTTGTATGATTTTATATA+TGG + tig0006225:18593-18612 Msa1343070:intron 15.0%
!! CTGTATATAATCATTAAAAA+TGG + tig0006225:18756-18775 Msa1343070:intron 15.0%
!!! TATCTTATTATTTTCTAACA+TGG + tig0006225:18812-18831 Msa1343070:intron 15.0%
!!! TTTGTAAAAAAACTTTTACA+CGG + tig0006225:20473-20492 Msa1343070:intron 15.0%
!! GTTAGATCATTAAAAATATT+AGG - tig0006225:20584-20603 None:intergenic 15.0%
!!! TTTTATAATTTATCTTGAAG+AGG + tig0006225:21390-21409 Msa1343070:intron 15.0%
!!! TTTAAATATTTGTTTTCAGT+TGG - tig0006225:21856-21875 None:intergenic 15.0%
!! CACTAATAAAAGAAAAAAAA+AGG - tig0006225:22264-22283 None:intergenic 15.0%
!! AATTAAACAATTCTTACAAA+AGG - tig0006225:22288-22307 None:intergenic 15.0%
!!! TAGTTTTAAATCCTATAATA+AGG + tig0006225:22324-22343 Msa1343070:intron 15.0%
!!! TTAATAAATTGTTTTGTTCT+TGG + tig0006225:22366-22385 Msa1343070:intron 15.0%
!!! CTTTTTTTTTTACATTTAAC+AGG - tig0006225:23130-23149 None:intergenic 15.0%
!! ACTAAATAAAAAACAGTTAT+TGG - tig0006225:23229-23248 None:intergenic 15.0%
!! TACGTAAATAGATTAATATG+CGG + tig0006225:19000-19019 Msa1343070:exon 20.0%
!! AAATCAAAATCTCATAAACT+CGG + tig0006225:19152-19171 Msa1343070:CDS 20.0%
!! TCAAATAAAAGATTGATTGT+TGG + tig0006225:19242-19261 Msa1343070:CDS 20.0%
!! AAACATCTCTTAATAATGAT+AGG + tig0006225:19315-19334 Msa1343070:CDS 20.0%
!! TAATAACTAACAATTCAAGA+AGG - tig0006225:19622-19641 None:intergenic 20.0%
!!! GTTTTTTCTGTCAAAAATTA+AGG + tig0006225:20743-20762 Msa1343070:intron 20.0%
!! AAAAATTAAGGATGTATTCA+AGG + tig0006225:20755-20774 Msa1343070:intron 20.0%
!!! ATAAAGGTACTATTTAAAAC+AGG + tig0006225:21231-21250 Msa1343070:intron 20.0%
!!! TTTGTTTTATCTGTTGTTAT+AGG - tig0006225:21316-21335 None:intergenic 20.0%
!!! TTATGAAAATAAGTTGAAAC+CGG + tig0006225:21413-21432 Msa1343070:intron 20.0%
!! CTATCATTGTTCTTATTATT+CGG - tig0006225:21712-21731 None:intergenic 20.0%
!! AAGAACAATGATAGAATAAA+AGG + tig0006225:21718-21737 Msa1343070:CDS 20.0%
!! AGAACAATGATAGAATAAAA+GGG + tig0006225:21719-21738 Msa1343070:CDS 20.0%
!! GGTAATAATACATTAATGTA+TGG + tig0006225:23684-23703 Msa1343070:three_prime_UTR 20.0%
!! GAAAATTTATAACTTCAAAC+CGG - tig0006225:23742-23761 None:intergenic 20.0%
!!! CATATTTTCATTTTGTTCTA+TGG + tig0006225:23780-23799 Msa1343070:three_prime_UTR 20.0%
! ATGGATAGGAAATTGAAATT+GGG - tig0006225:17788-17807 None:intergenic 25.0%
! CTGAAATTGAAGAGAAAATA+TGG - tig0006225:17927-17946 None:intergenic 25.0%
!! CATATTTTCTCTTCAATTTC+AGG + tig0006225:17925-17944 Msa1343070:five_prime_UTR 25.0%
!!! TTGTTTTGGATTTTTACTTG+TGG + tig0006225:17989-18008 Msa1343070:intron 25.0%
!!! TGTTTTGGATTTTTACTTGT+GGG + tig0006225:17990-18009 Msa1343070:intron 25.0%
! ATAAAACGAAAACGAATGAA+TGG - tig0006225:18675-18694 None:intergenic 25.0%
!! ATAAGTAGTTCTTTGACTTA+TGG - tig0006225:18840-18859 None:intergenic 25.0%
! ACGTAAATAGATTAATATGC+GGG + tig0006225:19001-19020 Msa1343070:exon 25.0%
!!! TCTTTTATTTGAAGAATCCT+TGG - tig0006225:19234-19253 None:intergenic 25.0%
! AAAGTCTACATAAAACTGAT+AGG + tig0006225:19267-19286 Msa1343070:CDS 25.0%
! TCTCTTAATAATGATAGGAA+AGG + tig0006225:19320-19339 Msa1343070:CDS 25.0%
! ATATTCAAAAACGTAAGAGA+AGG + tig0006225:19372-19391 Msa1343070:CDS 25.0%
!! ATCTCATTCTATGGATTAAA+AGG - tig0006225:19591-19610 None:intergenic 25.0%
! AAAAATGTTTCAACACAATG+AGG - tig0006225:19939-19958 None:intergenic 25.0%
! CAGAGTATAATATCATTATC+TGG - tig0006225:20019-20038 None:intergenic 25.0%
! AATGATATTATACTCTGTGA+TGG + tig0006225:20022-20041 Msa1343070:CDS 25.0%
! TGACTGTAAGATAGAAATAT+TGG + tig0006225:20238-20257 Msa1343070:CDS 25.0%
! CTTAAAAGTCATGCAAATAA+TGG - tig0006225:20397-20416 None:intergenic 25.0%
!!! ATTTGCATGACTTTTAAGTT+AGG + tig0006225:20399-20418 Msa1343070:intron 25.0%
! ATCAGTTAATCATAAACTGT+TGG - tig0006225:20453-20472 None:intergenic 25.0%
! GAAGTAAAAATCTGAAGATT+TGG - tig0006225:20550-20569 None:intergenic 25.0%
!! AGATTTTTACTTCCTTCTAT+TGG + tig0006225:20557-20576 Msa1343070:intron 25.0%
! AAAATATTAGGACCAATAGA+AGG - tig0006225:20572-20591 None:intergenic 25.0%
! GAAGTGAAAATCAAAATACT+TGG - tig0006225:20697-20716 None:intergenic 25.0%
!!! ATTATTTTTGGACCAATAGA+AGG - tig0006225:20719-20738 None:intergenic 25.0%
! TACTAAATCAAGAAGAAGAA+TGG + tig0006225:20811-20830 Msa1343070:CDS 25.0%
! TCAAATAAGTTAATCCAAAC+CGG + tig0006225:21512-21531 Msa1343070:intron 25.0%
!!! ATTTAAGTTCCTATCTTTTC+AGG + tig0006225:21546-21565 Msa1343070:intron 25.0%
! TTATCGAACATGTTAATAAC+AGG - tig0006225:22157-22176 None:intergenic 25.0%
!! CATTTCAATGTTTTATCTTC+AGG + tig0006225:23350-23369 Msa1343070:intron 25.0%
! TAATGAAACTATTGCAAGAA+AGG + tig0006225:23403-23422 Msa1343070:CDS 25.0%
! ATAGGAACATACATAATAGA+TGG - tig0006225:23588-23607 None:intergenic 25.0%
! ATGGAAAATTATGATTCATG+TGG + tig0006225:23799-23818 Msa1343070:three_prime_UTR 25.0%
ACATACCTAGTATCAACATT+GGG + tig0006225:17753-17772 Msa1343070:five_prime_UTR 30.0%
GATGGATAGGAAATTGAAAT+TGG - tig0006225:17789-17808 None:intergenic 30.0%
!!! TTTTCGATTGAATGATGGAT+AGG - tig0006225:17802-17821 None:intergenic 30.0%
TATCCATCATTCAATCGAAA+AGG + tig0006225:17801-17820 Msa1343070:five_prime_UTR 30.0%
ATCCATCATTCAATCGAAAA+GGG + tig0006225:17802-17821 Msa1343070:five_prime_UTR 30.0%
!!! TCAGGTTAGTTTTGTTTCAT+TGG + tig0006225:17943-17962 Msa1343070:intron 30.0%
!! GTTTTGGATTTTTACTTGTG+GGG + tig0006225:17991-18010 Msa1343070:intron 30.0%
ATTCATCATTCATGTGCAAA+AGG - tig0006225:18033-18052 None:intergenic 30.0%
CAATCAATTCAAGCAAATCA+TGG - tig0006225:18236-18255 None:intergenic 30.0%
CTCATATTGTGATGTTTACT+TGG + tig0006225:18260-18279 Msa1343070:intron 30.0%
!!! TACTTGGTGATGTTACATTT+TGG + tig0006225:18276-18295 Msa1343070:intron 30.0%
! ATTTTACGCAGAATTGAGAA+GGG + tig0006225:18430-18449 Msa1343070:intron 30.0%
ACAAAGATGAGAGAGTTAAT+AGG - tig0006225:18580-18599 None:intergenic 30.0%
AATAACAGACTTAGACTTAC+AGG + tig0006225:18713-18732 Msa1343070:intron 30.0%
!! AGGACTTGATGATGTAATTT+CGG + tig0006225:18733-18752 Msa1343070:intron 30.0%
TTACTATTATGCCTGTATCA+GGG + tig0006225:18973-18992 Msa1343070:intron 30.0%
ACTGAGAAGTTAAATAACCA+AGG + tig0006225:19026-19045 Msa1343070:CDS 30.0%
TTATTTGAAGAATCCTTGGT+TGG - tig0006225:19230-19249 None:intergenic 30.0%
AGGAATTCAACAAAGATACA+AGG + tig0006225:19287-19306 Msa1343070:CDS 30.0%
AATTCAACAAAGATACAAGG+AGG + tig0006225:19290-19309 Msa1343070:CDS 30.0%
CTCATAAAAATAGCGATACA+GGG - tig0006225:19913-19932 None:intergenic 30.0%
TCTCATAAAAATAGCGATAC+AGG - tig0006225:19914-19933 None:intergenic 30.0%
AATTTGCACAGAATATCTAG+AGG - tig0006225:19976-19995 None:intergenic 30.0%
GTTCAATCTTTAATGTGACA+CGG + tig0006225:20136-20155 Msa1343070:intron 30.0%
CTGTAAGATAGAAATATTGG+AGG + tig0006225:20241-20260 Msa1343070:CDS 30.0%
TTTGGTTGTGCATGAAAAAA+GGG - tig0006225:20532-20551 None:intergenic 30.0%
ATTTGGTTGTGCATGAAAAA+AGG - tig0006225:20533-20552 None:intergenic 30.0%
! TGATTTTCACTTCCTTCTAT+TGG + tig0006225:20704-20723 Msa1343070:intron 30.0%
GAATGTTCTATGTTAGATGA+AGG + tig0006225:20972-20991 Msa1343070:CDS 30.0%
GGTCGTTAGAATAATATTCA+AGG - tig0006225:21004-21023 None:intergenic 30.0%
TGAAATCTTTAGCAGTCATA+CGG + tig0006225:21155-21174 Msa1343070:intron 30.0%
ATATAAGCTATAAGCTGCTT+TGG + tig0006225:21350-21369 Msa1343070:intron 30.0%
AAGTACTTGTGATACTGTTT+GGG - tig0006225:21476-21495 None:intergenic 30.0%
TAAGTACTTGTGATACTGTT+TGG - tig0006225:21477-21496 None:intergenic 30.0%
TAGGAACTTAAATGAAACCT+TGG - tig0006225:21539-21558 None:intergenic 30.0%
CAAACATTTCCTGAAAAGAT+AGG - tig0006225:21558-21577 None:intergenic 30.0%
!! CTATCTTTTCAGGAAATGTT+TGG + tig0006225:21556-21575 Msa1343070:intron 30.0%
!! TTTTCAGGAAATGTTTGGAA+AGG + tig0006225:21561-21580 Msa1343070:intron 30.0%
AGAATAAAAGGGAATTCTTC+AGG + tig0006225:21730-21749 Msa1343070:CDS 30.0%
!!! GCATAAAAAGACCTTGTTTT+AGG + tig0006225:21752-21771 Msa1343070:CDS 30.0%
TCATGTGAAAACCTAAAACA+AGG - tig0006225:21766-21785 None:intergenic 30.0%
GAGATGGATGCAAATTTATA+GGG - tig0006225:22067-22086 None:intergenic 30.0%
!! GAGTTATTTGCATTGCTTTT+TGG + tig0006225:22091-22110 Msa1343070:intron 30.0%
CATGTTAATAACAGGAAGTT+TGG - tig0006225:22149-22168 None:intergenic 30.0%
ATTAACATGTTCGATAATGC+AGG + tig0006225:22160-22179 Msa1343070:intron 30.0%
CAATAAACTTTGACACAAGT+GGG + tig0006225:22395-22414 Msa1343070:intron 30.0%
! TATCACTTCTAAGAACTCAA+AGG + tig0006225:22457-22476 Msa1343070:CDS 30.0%
! ACAGTAATTTTTGCGATCTT+CGG - tig0006225:22524-22543 None:intergenic 30.0%
! ACATTTTCACACTTCTTCAA+GGG - tig0006225:22554-22573 None:intergenic 30.0%
! AACATTTTCACACTTCTTCA+AGG - tig0006225:22555-22574 None:intergenic 30.0%
! AAGAAGTGTGAAAATGTTAC+TGG + tig0006225:22557-22576 Msa1343070:CDS 30.0%
AATGCACAGAATATGACATT+TGG - tig0006225:22684-22703 None:intergenic 30.0%
!! TGTCGGTTTGACAAAAATAA+AGG + tig0006225:22890-22909 Msa1343070:intron 30.0%
CCACGAAAACTTAAGTTATT+AGG - tig0006225:23317-23336 None:intergenic 30.0%
! CCTAATAACTTAAGTTTTCG+TGG + tig0006225:23314-23333 Msa1343070:intron 30.0%
ATTGCAAGAAAGGAAAAAGA+AGG + tig0006225:23413-23432 Msa1343070:CDS 30.0%
! AAGGTAAGTTTTGCATTTGA+AGG + tig0006225:23432-23451 Msa1343070:CDS 30.0%
AGATTGAAGCAAAGATTAAC+TGG + tig0006225:23516-23535 Msa1343070:CDS 30.0%
! TTAAAACATTTTTGCACAGC+AGG + tig0006225:23662-23681 Msa1343070:three_prime_UTR 30.0%
! TAAAACATTTTTGCACAGCA+GGG + tig0006225:23663-23682 Msa1343070:three_prime_UTR 30.0%
GAAAATTATGATTCATGTGG+TGG + tig0006225:23802-23821 Msa1343070:three_prime_UTR 30.0%
!! CTTTAAGGTTCTTGTTGTGT+TGG - tig0006225:17703-17722 None:intergenic 35.0%
! TCGAAGCATCACAATCTTTA+AGG - tig0006225:17718-17737 None:intergenic 35.0%
CACATACCTAGTATCAACAT+TGG + tig0006225:17752-17771 Msa1343070:five_prime_UTR 35.0%
AGATTCCCAATGTTGATACT+AGG - tig0006225:17761-17780 None:intergenic 35.0%
! AACCCTTTTCGATTGAATGA+TGG - tig0006225:17807-17826 None:intergenic 35.0%
!! TCATTGGTGTTAAGTTCATG+TGG + tig0006225:17959-17978 Msa1343070:intron 35.0%
!! CATTGGTGTTAAGTTCATGT+GGG + tig0006225:17960-17979 Msa1343070:intron 35.0%
! GATTTTACGCAGAATTGAGA+AGG + tig0006225:18429-18448 Msa1343070:intron 35.0%
! TCATGCAATTTTGCCATTGT+TGG + tig0006225:18639-18658 Msa1343070:intron 35.0%
TGGAAAATGCTATCCAACAA+TGG - tig0006225:18655-18674 None:intergenic 35.0%
TACAATATGTGTTTCTCCGT+TGG + tig0006225:18927-18946 Msa1343070:intron 35.0%
GTCAAGATGAATTCTTCCAA+CGG - tig0006225:18946-18965 None:intergenic 35.0%
CTTACTATTATGCCTGTATC+AGG + tig0006225:18972-18991 Msa1343070:intron 35.0%
TACAAAACCGAGTAACACAA+AGG + tig0006225:19052-19071 Msa1343070:CDS 35.0%
! ACATGTTCCTTTGTGTTACT+CGG - tig0006225:19062-19081 None:intergenic 35.0%
!! AAAGGAACATGTCAAGTTGA+AGG + tig0006225:19070-19089 Msa1343070:CDS 35.0%
!!! TGTGCTACTTGTTTTGAACT+GGG - tig0006225:19105-19124 None:intergenic 35.0%
!!! TTGTGCTACTTGTTTTGAAC+TGG - tig0006225:19106-19125 None:intergenic 35.0%
TCAAAATCTCATAAACTCGG+AGG + tig0006225:19155-19174 Msa1343070:CDS 35.0%
!! AGCTACTGATTCTTCCAATA+AGG + tig0006225:19202-19221 Msa1343070:CDS 35.0%
AGATATTCCTTGTTCTTCTC+TGG - tig0006225:19451-19470 None:intergenic 35.0%
GAAATGTGCATCTCATTCTA+TGG - tig0006225:19600-19619 None:intergenic 35.0%
!! AGTTCAGTTGGTAGTATTGA+AGG + tig0006225:19818-19837 Msa1343070:CDS 35.0%
CACATAGATTCTGATGAATC+CGG + tig0006225:21023-21042 Msa1343070:CDS 35.0%
ACATAGATTCTGATGAATCC+GGG + tig0006225:21024-21043 Msa1343070:CDS 35.0%
TAAGTGCCTATTAGCATAAG+CGG + tig0006225:21259-21278 Msa1343070:intron 35.0%
TGATAACCGCTTATGCTAAT+AGG - tig0006225:21268-21287 None:intergenic 35.0%
! AATAAGTTGAAACCGGCTTA+TGG + tig0006225:21420-21439 Msa1343070:intron 35.0%
! ATAAGTTGAAACCGGCTTAT+GGG + tig0006225:21421-21440 Msa1343070:intron 35.0%
ACTTAAATGAAACCTTGGTC+CGG - tig0006225:21534-21553 None:intergenic 35.0%
AAGTGAGTGAAGATGAAGAT+TGG + tig0006225:21602-21621 Msa1343070:CDS 35.0%
AGTGAGTGAAGATGAAGATT+GGG + tig0006225:21603-21622 Msa1343070:CDS 35.0%
AAAAAGACGGAGAAGAGAAA+AGG + tig0006225:21633-21652 Msa1343070:CDS 35.0%
! TTTTCAGTTGGAACTTTGAG+AGG - tig0006225:21844-21863 None:intergenic 35.0%
GCTTCTGGCAAATTTCATAA+TGG - tig0006225:21904-21923 None:intergenic 35.0%
AAGTCCCATTTCTTTCGAAA+GGG - tig0006225:21978-21997 None:intergenic 35.0%
GGAGATGGATGCAAATTTAT+AGG - tig0006225:22068-22087 None:intergenic 35.0%
AAGCAATGCAAATAACTCTG+CGG - tig0006225:22089-22108 None:intergenic 35.0%
CGATAATGCAGGTTAACAAA+TGG + tig0006225:22171-22190 Msa1343070:intron 35.0%
GTTCAAAAATGCACGTTACA+TGG + tig0006225:22193-22212 Msa1343070:CDS 35.0%
CATGGCACTTAAAATGAGAA+AGG + tig0006225:22211-22230 Msa1343070:CDS 35.0%
! ATGATCAGACGCCTTATTAT+AGG - tig0006225:22338-22357 None:intergenic 35.0%
GCAATAAACTTTGACACAAG+TGG + tig0006225:22394-22413 Msa1343070:intron 35.0%
!!! GGTTTTGTTTAGCTTCAAGA+AGG + tig0006225:22416-22435 Msa1343070:intron 35.0%
! TTTGTTTAGCTTCAAGAAGG+AGG + tig0006225:22419-22438 Msa1343070:intron 35.0%
! CAGTAATTTTTGCGATCTTC+GGG - tig0006225:22523-22542 None:intergenic 35.0%
GAAGATCGCAAAAATTACTG+TGG + tig0006225:22523-22542 Msa1343070:CDS 35.0%
! GTTCATGCAGTTGATATTTG+AGG + tig0006225:22744-22763 Msa1343070:intron 35.0%
! AATTTTACGATACCAGTCCA+TGG - tig0006225:22817-22836 None:intergenic 35.0%
GACTGGTATCGTAAAATTGT+TGG + tig0006225:22819-22838 Msa1343070:intron 35.0%
AGATGTAACATGATCTGTGT+CGG + tig0006225:22873-22892 Msa1343070:intron 35.0%
GACTAGATCATTGTCAAGTT+TGG - tig0006225:22969-22988 None:intergenic 35.0%
GACTGTAACTTCTACTTTCA+AGG + tig0006225:23015-23034 Msa1343070:intron 35.0%
! GTTTTATCTTCAGGATTCCA+TGG + tig0006225:23359-23378 Msa1343070:intron 35.0%
TGGAGTTCAAAATTGCAGAT+CGG + tig0006225:23536-23555 Msa1343070:CDS 35.0%
ATGTTCCTATAGCTGAGTTA+AGG + tig0006225:23598-23617 Msa1343070:CDS 35.0%
TGTTCCTATAGCTGAGTTAA+GGG + tig0006225:23599-23618 Msa1343070:CDS 35.0%
! TTTTCCCTTAACTCAGCTAT+AGG - tig0006225:23606-23625 None:intergenic 35.0%
TATAGCTGAGTTAAGGGAAA+AGG + tig0006225:23605-23624 Msa1343070:CDS 35.0%
GTACAATGAAATGAAGCAAC+CGG + tig0006225:23720-23739 Msa1343070:three_prime_UTR 35.0%
!!! CATGTGGGTTTGTCTTGTTT+TGG + tig0006225:17975-17994 Msa1343070:intron 40.0%
TGTGGGGCTTAATAAAGTCA+AGG + tig0006225:18007-18026 Msa1343070:intron 40.0%
TGAGTCACTTAGAACACGAA+CGG - tig0006225:18192-18211 None:intergenic 40.0%
AATCTCGATTGTAACCACCT+TGG - tig0006225:18413-18432 None:intergenic 40.0%
TTACGTATCAACCCTGATAC+AGG - tig0006225:18987-19006 None:intergenic 40.0%
!! TACTCGGTTTTGTAGATCCT+TGG - tig0006225:19046-19065 None:intergenic 40.0%
!!! TGCTACTTGTTTTGAACTGG+GGG - tig0006225:19103-19122 None:intergenic 40.0%
!!! GTGCTACTTGTTTTGAACTG+GGG - tig0006225:19104-19123 None:intergenic 40.0%
CAAGTAGCACAAAACACCAA+AGG + tig0006225:19114-19133 Msa1343070:CDS 40.0%
TCAGTCTGTGTTTCTTCCTT+TGG - tig0006225:19133-19152 None:intergenic 40.0%
AGGAAAGGTGAGATAGATGT+TGG + tig0006225:19335-19354 Msa1343070:CDS 40.0%
!! GATAGATGTTGGTGATCAAG+AGG + tig0006225:19346-19365 Msa1343070:CDS 40.0%
TATTCCTTGTTCTTCTCTGG+AGG - tig0006225:19448-19467 None:intergenic 40.0%
AGAGAAGATTAGGCCAGAAA+AGG + tig0006225:19718-19737 Msa1343070:CDS 40.0%
!! AAGAGAATCCAGTTGGTGAA+TGG - tig0006225:19798-19817 None:intergenic 40.0%
CTGAACTAAGAGAATCCAGT+TGG - tig0006225:19805-19824 None:intergenic 40.0%
CTGGATTCTCTTAGTTCAGT+TGG + tig0006225:19806-19825 Msa1343070:CDS 40.0%
GCACAGAATATCTAGAGGAT+GGG - tig0006225:19971-19990 None:intergenic 40.0%
TGCACAGAATATCTAGAGGA+TGG - tig0006225:19972-19991 None:intergenic 40.0%
AATACTTGCAAAACCAGCCT+TGG - tig0006225:20217-20236 None:intergenic 40.0%
ATTTCCCCTTAGACAGTACT+TGG + tig0006225:20288-20307 Msa1343070:CDS 40.0%
GATATACACTGACAGTGTAG+AGG - tig0006225:20635-20654 None:intergenic 40.0%
CTTGGTTGTGTAAGAGACAA+GGG - tig0006225:20679-20698 None:intergenic 40.0%
ACTTGGTTGTGTAAGAGACA+AGG - tig0006225:20680-20699 None:intergenic 40.0%
GGATTATAGTCATCGTCTTC+AGG - tig0006225:20849-20868 None:intergenic 40.0%
ACGATGACTATAATCCAGAG+AGG + tig0006225:20853-20872 Msa1343070:CDS 40.0%
TGACTATAATCCAGAGAGGA+AGG + tig0006225:20857-20876 Msa1343070:CDS 40.0%
TCCAGCATGTGGTCTTTAAA+TGG + tig0006225:20948-20967 Msa1343070:CDS 40.0%
TCCATTTAAAGACCACATGC+TGG - tig0006225:20952-20971 None:intergenic 40.0%
CGGATTCATCAGAATCTATG+TGG - tig0006225:21025-21044 None:intergenic 40.0%
CATAGATTCTGATGAATCCG+GGG + tig0006225:21025-21044 Msa1343070:CDS 40.0%
TTATGACATGTCCCATAAGC+CGG - tig0006225:21435-21454 None:intergenic 40.0%
TCTTCACTCACTTGTTCACA+AGG - tig0006225:21595-21614 None:intergenic 40.0%
GTGAGTGAAGATGAAGATTG+GGG + tig0006225:21604-21623 Msa1343070:CDS 40.0%
! GTTTTCACATGATGCAGTTG+AGG + tig0006225:21774-21793 Msa1343070:CDS 40.0%
GCTCATTCTCTGCAAAAACT+TGG - tig0006225:21931-21950 None:intergenic 40.0%
CAAGTCCCATTTCTTTCGAA+AGG - tig0006225:21979-21998 None:intergenic 40.0%
! AAATCTGACTCGAGACTCTA+AGG - tig0006225:22019-22038 None:intergenic 40.0%
TTCTACATCACAACATGTGC+AGG + tig0006225:22481-22500 Msa1343070:CDS 40.0%
!!! TCTGGTCGCTTTTTCTTCAA+AGG - tig0006225:22611-22630 None:intergenic 40.0%
! CATGCAGTTGATATTTGAGG+TGG + tig0006225:22747-22766 Msa1343070:intron 40.0%
ATGGTAAACCACCTATCAAG+GGG - tig0006225:22798-22817 None:intergenic 40.0%
CATGGTAAACCACCTATCAA+GGG - tig0006225:22799-22818 None:intergenic 40.0%
TCTCAGACGTTACAGCAAAA+AGG + tig0006225:22993-23012 Msa1343070:intron 40.0%
AACAATTTAGTCCACCTCTC+AGG - tig0006225:23104-23123 None:intergenic 40.0%
CCGAAAGGCTAAACTATTAG+GGG - tig0006225:23164-23183 None:intergenic 40.0%
! CCCCTAATAGTTTAGCCTTT+CGG + tig0006225:23161-23180 Msa1343070:intron 40.0%
CCCGAAAGGCTAAACTATTA+GGG - tig0006225:23165-23184 None:intergenic 40.0%
! CCCTAATAGTTTAGCCTTTC+GGG + tig0006225:23162-23181 Msa1343070:intron 40.0%
TCCCGAAAGGCTAAACTATT+AGG - tig0006225:23166-23185 None:intergenic 40.0%
TTATCTTCAGGATTCCATGG+AGG + tig0006225:23362-23381 Msa1343070:intron 40.0%
GGAGTTCAAAATTGCAGATC+GGG + tig0006225:23537-23556 Msa1343070:CDS 40.0%
!!! GCTACTTGTTTTGAACTGGG+GGG - tig0006225:19102-19121 None:intergenic 45.0%
! TTCCAATAAGGTGCCAACCA+AGG + tig0006225:19214-19233 Msa1343070:CDS 45.0%
ATCCTTGGTTGGCACCTTAT+TGG - tig0006225:19219-19238 None:intergenic 45.0%
AACCTTATCGATGCTTACGC+TGG + tig0006225:19494-19513 Msa1343070:CDS 45.0%
! TTGGAAAGGTCAGAGGTATG+AGG + tig0006225:19523-19542 Msa1343070:intron 45.0%
GTCACAGTCGAGAGAAGATT+AGG + tig0006225:19708-19727 Msa1343070:intron 45.0%
GGTTCTGTCATTGCTACAGA+TGG + tig0006225:19839-19858 Msa1343070:CDS 45.0%
AAGGAGGATCAAGACATCTC+TGG - tig0006225:20069-20088 None:intergenic 45.0%
GAGATGTCTTGATCCTCCTT+TGG + tig0006225:20069-20088 Msa1343070:CDS 45.0%
TCACTGTCTTCAGTCTCCAA+AGG - tig0006225:20088-20107 None:intergenic 45.0%
! ACCTGCCAAGTACTGTCTAA+GGG - tig0006225:20296-20315 None:intergenic 45.0%
! AACCTGCCAAGTACTGTCTA+AGG - tig0006225:20297-20316 None:intergenic 45.0%
GAAGAAGCTGCTATTCCTGA+CGG + tig0006225:20777-20796 Msa1343070:CDS 45.0%
TCGTCTTCAGGATCATCTGA+CGG - tig0006225:20837-20856 None:intergenic 45.0%
CAAGTAGTTCTTCCAGCATG+TGG + tig0006225:20937-20956 Msa1343070:CDS 45.0%
AGTTAATCCAAACCGGACCA+AGG + tig0006225:21519-21538 Msa1343070:intron 45.0%
AATGAAACCTTGGTCCGGTT+TGG - tig0006225:21529-21548 None:intergenic 45.0%
TCACTCACTTGTTCACAAGG+TGG - tig0006225:21592-21611 None:intergenic 45.0%
GAGAAGAGAAAAGGAGTCTG+AGG + tig0006225:21642-21661 Msa1343070:CDS 45.0%
CAAAAACTTGGCGAAGCTTC+TGG - tig0006225:21919-21938 None:intergenic 45.0%
GACGCCCTTTCGAAAGAAAT+GGG + tig0006225:21971-21990 Msa1343070:CDS 45.0%
AATGGGACTTGATGCTGCAA+AGG + tig0006225:21988-22007 Msa1343070:CDS 45.0%
TGCAAATAACTCTGCGGAGA+TGG - tig0006225:22083-22102 None:intergenic 45.0%
ACAACATGTGCAGGAAGAAG+AGG + tig0006225:22490-22509 Msa1343070:CDS 45.0%
ACCAGAAATACCTCCACACT+TGG + tig0006225:22625-22644 Msa1343070:CDS 45.0%
CCAGAAATACCTCCACACTT+GGG + tig0006225:22626-22645 Msa1343070:CDS 45.0%
!!! TTGCCATTTTCTCCCAAGTG+TGG - tig0006225:22641-22660 None:intergenic 45.0%
CTTGGGAGAAAATGGCAACA+AGG + tig0006225:22643-22662 Msa1343070:CDS 45.0%
TGGTAAACCACCTATCAAGG+GGG - tig0006225:22797-22816 None:intergenic 45.0%
CCATGGTAAACCACCTATCA+AGG - tig0006225:22800-22819 None:intergenic 45.0%
CCTTGATAGGTGGTTTACCA+TGG + tig0006225:22797-22816 Msa1343070:intron 45.0%
ATAGGTGGTTTACCATGGAC+TGG + tig0006225:22802-22821 Msa1343070:intron 45.0%
TCTCAGCAGTGAAGAAAACG+AGG - tig0006225:22856-22875 None:intergenic 45.0%
AACATCATCACTGACCTCCA+TGG - tig0006225:23379-23398 None:intergenic 45.0%
AAATTCCAACTCTGCTGCCT+CGG - tig0006225:23463-23482 None:intergenic 45.0%
CGGAGGTTGCACAAATGTGT+CGG + tig0006225:19172-19191 Msa1343070:CDS 50.0%
TACGCCTCCAGAGAAGAACA+AGG + tig0006225:19441-19460 Msa1343070:CDS 50.0%
!! CTCCAGCGTAAGCATCGATA+AGG - tig0006225:19499-19518 None:intergenic 50.0%
ATCGATGCTTACGCTGGAGA+AGG + tig0006225:19500-19519 Msa1343070:CDS 50.0%
ATGCTTACGCTGGAGAAGGT+TGG + tig0006225:19504-19523 Msa1343070:CDS 50.0%
TACGCTGGAGAAGGTTGGAA+AGG + tig0006225:19509-19528 Msa1343070:CDS 50.0%
GAGAAGGTTGGAAAGGTCAG+AGG + tig0006225:19516-19535 Msa1343070:CDS 50.0%
!! CCAGTTGGTGAATGGCATCA+CGG - tig0006225:19790-19809 None:intergenic 50.0%
CTGTCTTCAGTCTCCAAAGG+AGG - tig0006225:20085-20104 None:intergenic 50.0%
! CAAAACCAGCCTTGGTCTTC+AGG - tig0006225:20209-20228 None:intergenic 50.0%
AGGCAACAAACGCGCATCTT+GGG + tig0006225:20261-20280 Msa1343070:CDS 50.0%
! CCTGCCAAGTACTGTCTAAG+GGG - tig0006225:20295-20314 None:intergenic 50.0%
TGGCTTTCTTCCTTCCTCTC+TGG - tig0006225:20870-20889 None:intergenic 50.0%
GAGAGGAAGGAAGAAAGCCA+TGG + tig0006225:20870-20889 Msa1343070:CDS 50.0%
AGGAAGGAAGAAAGCCATGG+TGG + tig0006225:20873-20892 Msa1343070:CDS 50.0%
! CTTCTGTGTTGATGCCACCA+TGG - tig0006225:20890-20909 None:intergenic 50.0%
CATGGTGGCATCAACACAGA+AGG + tig0006225:20888-20907 Msa1343070:CDS 50.0%
GAATCCGGGGAAATAGCATG+TGG + tig0006225:21038-21057 Msa1343070:CDS 50.0%
!! ACGACCACATGCTATTTCCC+CGG - tig0006225:21045-21064 None:intergenic 50.0%
GGGAAATAGCATGTGGTCGT+AGG + tig0006225:21045-21064 Msa1343070:CDS 50.0%
GCTTCCTCCAAAATCCGTGA+AGG + tig0006225:21949-21968 Msa1343070:CDS 50.0%
!! TTTCGAAAGGGCGTCCTTCA+CGG - tig0006225:21966-21985 None:intergenic 50.0%
GGACGCCCTTTCGAAAGAAA+TGG + tig0006225:21970-21989 Msa1343070:CDS 50.0%
!! CCCAAGTGTGGAGGTATTTC+TGG - tig0006225:22629-22648 None:intergenic 50.0%
! CCATTTTCTCCCAAGTGTGG+AGG - tig0006225:22638-22657 None:intergenic 50.0%
CCTCCACACTTGGGAGAAAA+TGG + tig0006225:22635-22654 Msa1343070:CDS 50.0%
AGAAGATCTACCGTGGAGTG+TGG + tig0006225:22770-22789 Msa1343070:intron 50.0%
CTCTCAGGCAAGTTCTACAG+TGG - tig0006225:23089-23108 None:intergenic 50.0%
CACTGTAGAACTTGCCTGAG+AGG + tig0006225:23087-23106 Msa1343070:intron 50.0%
TGTAGAACTTGCCTGAGAGG+TGG + tig0006225:23090-23109 Msa1343070:intron 50.0%
ACGTCACGAATCATCCCGAA+AGG - tig0006225:23179-23198 None:intergenic 50.0%
TTTCGGGATGATTCGTGACG+TGG + tig0006225:23178-23197 Msa1343070:intron 50.0%
TGCATTTGAAGGAGACTCCG+AGG + tig0006225:23443-23462 Msa1343070:CDS 50.0%
GTCATCGTCACTCATCGCCA+AGG + tig0006225:18393-18412 Msa1343070:intron 55.0%
ATCGTCACTCATCGCCAAGG+TGG + tig0006225:18396-18415 Msa1343070:intron 55.0%
! GCTCGTTGCAGCTCCTTTTC+TGG - tig0006225:19734-19753 None:intergenic 55.0%
CCGTGATGCCATTCACCAAC+TGG + tig0006225:19787-19806 Msa1343070:CDS 55.0%
GCAGTTCCTCCTGAAGACCA+AGG + tig0006225:20197-20216 Msa1343070:intron 55.0%
TTCCTCCTGAAGACCAAGGC+TGG + tig0006225:20201-20220 Msa1343070:CDS 55.0%
! AACCAGCCTTGGTCTTCAGG+AGG - tig0006225:20206-20225 None:intergenic 55.0%
GAGGCAACAAACGCGCATCT+TGG + tig0006225:20260-20279 Msa1343070:CDS 55.0%
CCCCTTAGACAGTACTTGGC+AGG + tig0006225:20292-20311 Msa1343070:CDS 55.0%
AGTAATGCAGCATCGCCGTC+AGG - tig0006225:20795-20814 None:intergenic 55.0%
! GCGTCCTTCACGGATTTTGG+AGG - tig0006225:21956-21975 None:intergenic 55.0%
!! AGGGCGTCCTTCACGGATTT+TGG - tig0006225:21959-21978 None:intergenic 55.0%
GAGGTGGAGAAGATCTACCG+TGG + tig0006225:22763-22782 Msa1343070:intron 55.0%
TCAAGGGGGTCCACACTCCA+CGG - tig0006225:22783-22802 None:intergenic 60.0%
GGAGTGTGGACCCCCTTGAT+AGG + tig0006225:22784-22803 Msa1343070:intron 60.0%
GTGTGGACCCCCTTGATAGG+TGG + tig0006225:22787-22806 Msa1343070:intron 60.0%
AGACTCCGAGGCAGCAGAGT+TGG + tig0006225:23455-23474 Msa1343070:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0006225 gene 17632 23829 17632 ID=Msa1343070;Name=Msa1343070
tig0006225 mRNA 17632 23829 17632 ID=Msa1343070-mRNA-1;Parent=Msa1343070;Name=Msa1343070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=338|1|1|1|0.9|0.81|11|194|710
tig0006225 exon 17632 17946 17632 ID=Msa1343070-mRNA-1:exon:3922;Parent=Msa1343070-mRNA-1
tig0006225 exon 18994 19537 18994 ID=Msa1343070-mRNA-1:exon:3923;Parent=Msa1343070-mRNA-1
tig0006225 exon 19715 19880 19715 ID=Msa1343070-mRNA-1:exon:3924;Parent=Msa1343070-mRNA-1
tig0006225 exon 19980 20103 19980 ID=Msa1343070-mRNA-1:exon:3925;Parent=Msa1343070-mRNA-1
tig0006225 exon 20201 20313 20201 ID=Msa1343070-mRNA-1:exon:3926;Parent=Msa1343070-mRNA-1
tig0006225 exon 20765 21103 20765 ID=Msa1343070-mRNA-1:exon:3927;Parent=Msa1343070-mRNA-1
tig0006225 exon 21568 21795 21568 ID=Msa1343070-mRNA-1:exon:3928;Parent=Msa1343070-mRNA-1
tig0006225 exon 21920 22009 21920 ID=Msa1343070-mRNA-1:exon:3929;Parent=Msa1343070-mRNA-1
tig0006225 exon 22182 22232 22182 ID=Msa1343070-mRNA-1:exon:3930;Parent=Msa1343070-mRNA-1
tig0006225 exon 22428 22664 22428 ID=Msa1343070-mRNA-1:exon:3931;Parent=Msa1343070-mRNA-1
tig0006225 exon 23372 23829 23372 ID=Msa1343070-mRNA-1:exon:3932;Parent=Msa1343070-mRNA-1
tig0006225 five_prime_UTR 17632 17946 17632 ID=Msa1343070-mRNA-1:five_prime_utr;Parent=Msa1343070-mRNA-1
tig0006225 five_prime_UTR 18994 19016 18994 ID=Msa1343070-mRNA-1:five_prime_utr;Parent=Msa1343070-mRNA-1
tig0006225 CDS 19017 19537 19017 ID=Msa1343070-mRNA-1:cds;Parent=Msa1343070-mRNA-1
tig0006225 CDS 19715 19880 19715 ID=Msa1343070-mRNA-1:cds;Parent=Msa1343070-mRNA-1
tig0006225 CDS 19980 20103 19980 ID=Msa1343070-mRNA-1:cds;Parent=Msa1343070-mRNA-1
tig0006225 CDS 20201 20313 20201 ID=Msa1343070-mRNA-1:cds;Parent=Msa1343070-mRNA-1
tig0006225 CDS 20765 21103 20765 ID=Msa1343070-mRNA-1:cds;Parent=Msa1343070-mRNA-1
tig0006225 CDS 21568 21795 21568 ID=Msa1343070-mRNA-1:cds;Parent=Msa1343070-mRNA-1
tig0006225 CDS 21920 22009 21920 ID=Msa1343070-mRNA-1:cds;Parent=Msa1343070-mRNA-1
tig0006225 CDS 22182 22232 22182 ID=Msa1343070-mRNA-1:cds;Parent=Msa1343070-mRNA-1
tig0006225 CDS 22428 22664 22428 ID=Msa1343070-mRNA-1:cds;Parent=Msa1343070-mRNA-1
tig0006225 CDS 23372 23635 23372 ID=Msa1343070-mRNA-1:cds;Parent=Msa1343070-mRNA-1
tig0006225 three_prime_UTR 23636 23829 23636 ID=Msa1343070-mRNA-1:three_prime_utr;Parent=Msa1343070-mRNA-1
Gene Sequence

>Msa1343070

ATGCGGGATACTGAGAAGTTAAATAACCAAGGATCTACAAAACCGAGTAACACAAAGGAACATGTCAAGTTGAAGGTAGATTCCCCCCAGTTCAAAACAAGTAGCACAAAACACCAAAGGAAGAAACACAGACTGAAATCAAAATCTCATAAACTCGGAGGTTGCACAAATGTGTCGGTGAAGACAGCTACTGATTCTTCCAATAAGGTGCCAACCAAGGATTCTTCAAATAAAAGATTGATTGTTGGACAAAGTCTACATAAAACTGATAGGAATTCAACAAAGATACAAGGAGGAAAAACATCTCTTAATAATGATAGGAAAGGTGAGATAGATGTTGGTGATCAAGAGGCAAATATTCAAAAACGTAAGAGAAGGAGAAAGAAGAAAAGACAGAGACATGATGTAGATCTTGATGATACTGTACGCCTCCAGAGAAGAACAAGGAATATCTTAATCAGAATGAAGCAAGAGCAGAACCTTATCGATGCTTACGCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAGAAGATTAGGCCAGAAAAGGAGCTGCAACGAGCAAAAAAGCAGATTTTAAAATGCAAGCTTAGTATCCGTGATGCCATTCACCAACTGGATTCTCTTAGTTCAGTTGGTAGTATTGAAGGTTCTGTCATTGCTACAGATGGATCTGTTTCTCATGAACATATATTCTGTGCAAATTGCAAGATAAACGAAGTTTCTCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGTGCGTTTCACCAGAGATGTCTTGATCCTCCTTTGGAGACTGAAGACATTCCTCCTGAAGACCAAGGCTGGTTTTGCAAGTATTGTGACTGTAAGATAGAAATATTGGAGGCAACAAACGCGCATCTTGGGACTCATTTCCCCTTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAAGCTGCTATTCCTGACGGCGATGCTGCATTACTAAATCAAGAAGAAGAATGGCCGTCAGATGATCCTGAAGACGATGACTATAATCCAGAGAGGAAGGAAGAAAGCCATGGTGGCATCAACACAGAAGGAAATGATGAAAACGCATCTGATGATTCAAGTAGTTCTTCCAGCATGTGGTCTTTAAATGGAGAATGTTCTATGTTAGATGAAGGCATCAACCTTGAATATTATTCTAACGACCACATAGATTCTGATGAATCCGGGGAAATAGCATGTGGTCGTAGGCAGCGTAGAGCTGTTGACTACAAGAAGCTTTATGATGAAATGTTTGGAAAGGATGCTCCACCTTGTGAACAAGTGAGTGAAGATGAAGATTGGGGTCCTGGAAAAAGACGGAGAAGAGAAAAGGAGTCTGAGGCAGTTAATACTCTTATGACTTTACATGAGAGTGAAAATAAATATCCGAATAATAAGAACAATGATAGAATAAAAGGGAATTCTTCAGGCATAAAAAGACCTTGTTTTAGGTTTTCACATGATGCAGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAAATCCGTGAAGGACGCCCTTTCGAAAGAAATGGGACTTGATGCTGCAAAGGTTAACAAATGGTTCAAAAATGCACGTTACATGGCACTTAAAATGAGAAAGCTTCAAGAAGGAGGACAACAGCTTCAGAGTATCACTTCTAAGAACTCAAAGGATTCTACATCACAACATGTGCAGGAAGAAGAGGTTTTGAACCCGAAGATCGCAAAAATTACTGTGGTTCGTCCCTTGAAGAAGTGTGAAAATGTTACTGGCAAAGAAAAAACAAAAGCATCTAGCAGTCCTTTGAAGAAAAAGCGACCAGAAATACCTCCACACTTGGGAGAAAATGGCAACAAGGATTCCATGGAGGTCAGTGATGATGTTAGCTTAATGAAACTATTGCAAGAAAGGAAAAAGAAGGTAAGTTTTGCATTTGAAGGAGACTCCGAGGCAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGACGAAAATAGATAGATTGAAGCAAAGATTAACTGGAGTTCAAAATTGCAGATCGGGTTCAGATGAAGTTCATTTGAATGAGCCATCTATTATGTATGTTCCTATAGCTGAGTTAAGGGAAAAGGTGAAATAG

Protein sequence

>Msa1343070

MRDTEKLNNQGSTKPSNTKEHVKLKVDSPQFKTSSTKHQRKKHRLKSKSHKLGGCTNVSVKTATDSSNKVPTKDSSNKRLIVGQSLHKTDRNSTKIQGGKTSLNNDRKGEIDVGDQEANIQKRKRRRKKKRQRHDVDLDDTVRLQRRTRNILIRMKQEQNLIDAYAGEGWKGQSREKIRPEKELQRAKKQILKCKLSIRDAIHQLDSLSSVGSIEGSVIATDGSVSHEHIFCANCKINEVSPDNDIILCDGTCNRAFHQRCLDPPLETEDIPPEDQGWFCKYCDCKIEILEATNAHLGTHFPLDSTWQDVFKEEAAIPDGDAALLNQEEEWPSDDPEDDDYNPERKEESHGGINTEGNDENASDDSSSSSSMWSLNGECSMLDEGINLEYYSNDHIDSDESGEIACGRRQRRAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRRRREKESEAVNTLMTLHESENKYPNNKNNDRIKGNSSGIKRPCFRFSHDAVEKLRQVFAENELPPKSVKDALSKEMGLDAAKVNKWFKNARYMALKMRKLQEGGQQLQSITSKNSKDSTSQHVQEEEVLNPKIAKITVVRPLKKCENVTGKEKTKASSSPLKKKRPEIPPHLGENGNKDSMEVSDDVSLMKLLQERKKKVSFAFEGDSEAAELEFERLSKVKTKIDRLKQRLTGVQNCRSGSDEVHLNEPSIMYVPIAELREKVK*