Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985320 | A0A6A2YVP4 | 49.727 | 183 | 36 | 7 | 6 | 140 | 170 | 344 | 2.10e-11 | 71.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107830 | Msa0985320 | 0.803008 | 4.279575e-49 | -8.615850e-47 |
| Msa0614960 | Msa0985320 | 0.807101 | 5.957498e-50 | -8.615850e-47 |
| Msa0655370 | Msa0985320 | 0.812380 | 4.363975e-51 | -8.615850e-47 |
| Msa0699170 | Msa0985320 | 0.824353 | 8.452216e-54 | -8.615850e-47 |
| Msa0716620 | Msa0985320 | 0.807790 | 4.256119e-50 | -8.615850e-47 |
| Msa0728230 | Msa0985320 | 0.807623 | 4.617716e-50 | -8.615850e-47 |
| Msa0728570 | Msa0985320 | 0.819089 | 1.394542e-52 | -8.615850e-47 |
| Msa0750790 | Msa0985320 | 0.800554 | 1.365088e-48 | -8.615850e-47 |
| Msa0772350 | Msa0985320 | 0.815122 | 1.086501e-51 | -8.615850e-47 |
| Msa0129290 | Msa0985320 | 0.810054 | 1.395011e-50 | -8.615850e-47 |
| Msa0390200 | Msa0985320 | 0.800763 | 1.237521e-48 | -8.615850e-47 |
| Msa0464310 | Msa0985320 | 0.809488 | 1.846150e-50 | -8.615850e-47 |
| Msa0985320 | Msa0985360 | 0.960841 | 5.147131e-119 | -8.615850e-47 |
| Msa0985320 | Msa0985380 | 0.805013 | 1.638655e-49 | -8.615850e-47 |
| Msa0985320 | Msa1119670 | 0.802571 | 5.267149e-49 | -8.615850e-47 |
| Msa0883570 | Msa0985320 | 0.835089 | 2.055994e-56 | -8.615850e-47 |
| Msa0910610 | Msa0985320 | 0.835492 | 1.625759e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATATTTGTAGGGCTTCTT+TGG | 0.254191 | 6_4:-31697906 | None:intergenic |
| GGATACTTGTATGGCTTCTT+AGG | 0.255496 | 6_4:-31698101 | None:intergenic |
| GGATACTTATAAGGTTTCTT+TGG | 0.305468 | 6_4:-31697759 | None:intergenic |
| TGGTGACTTGTAATAGTAAT+AGG | 0.322769 | 6_4:-31697988 | None:intergenic |
| GGTGGTGAAGGATACTTATA+AGG | 0.323970 | 6_4:-31697768 | None:intergenic |
| GGCTTCTTTGGTGGCGGTGG+CGG | 0.349513 | 6_4:-31697894 | None:intergenic |
| GGAGACTTGTACTTATATAT+TGG | 0.354256 | 6_4:-31697870 | None:intergenic |
| TTCTTTGGTGGCGGTGGCGG+AGG | 0.367644 | 6_4:-31697891 | None:intergenic |
| CTTTATTTGCAACTGTTCTT+CGG | 0.382892 | 6_4:-31699142 | None:intergenic |
| GTTCGACGCGGTGGTGGTGG+TGG | 0.408034 | 6_4:-31697963 | None:intergenic |
| TAGGGCTTCTTTGGTGGCGG+TGG | 0.414656 | 6_4:-31697897 | None:intergenic |
| GAACACCCTACTACTATTAC+AGG | 0.418643 | 6_4:+31698024 | Msa0985320:CDS |
| TAGGGTGTTCGGCGTGGTGG+TGG | 0.420964 | 6_4:-31698011 | None:intergenic |
| GGTGTTCGGCGTGGTGGTGG+TGG | 0.425247 | 6_4:-31698008 | None:intergenic |
| GGTGTTCGACGCGGTGGTGG+TGG | 0.425362 | 6_4:-31697966 | None:intergenic |
| GGCTTCCTATGTGGTGGTGG+TGG | 0.431209 | 6_4:-31698050 | None:intergenic |
| TGGAGGTGATGGATATTTGT+AGG | 0.433356 | 6_4:-31697916 | None:intergenic |
| TGGAGGAAATTGGTACTTGT+AGG | 0.433488 | 6_4:-31698072 | None:intergenic |
| TGGAGGTGATGAGTATTTGT+AGG | 0.455879 | 6_4:-31697844 | None:intergenic |
| AACTTTGGTGGAGGTGGTGA+AGG | 0.456550 | 6_4:-31697780 | None:intergenic |
| TAGGTGGTGGTGGAGGAAAT+TGG | 0.457085 | 6_4:-31698082 | None:intergenic |
| TATGGCTTCTTAGGTGGTGG+TGG | 0.463859 | 6_4:-31698092 | None:intergenic |
| TAAGGTTTCTTTGGTGGTGA+TGG | 0.464174 | 6_4:-31697750 | None:intergenic |
| GGAGGTGATGGATATTTGTA+GGG | 0.465112 | 6_4:-31697915 | None:intergenic |
| TGGTGACCTGTAATAGTAGT+AGG | 0.470208 | 6_4:-31698030 | None:intergenic |
| TACTTGTAGACTGGTGGTGG+TGG | 0.475386 | 6_4:-31698128 | None:intergenic |
| TACTTATAAGGTTTCTTTGG+TGG | 0.482329 | 6_4:-31697756 | None:intergenic |
| TAGGGTGTTCGACGCGGTGG+TGG | 0.482891 | 6_4:-31697969 | None:intergenic |
| GAGTAATGGTAAGGAAACTT+TGG | 0.487085 | 6_4:-31697795 | None:intergenic |
| TAAGGAAACTTTGGTGGAGG+TGG | 0.490542 | 6_4:-31697786 | None:intergenic |
| TATTTGTAGGGCTTCTTTGG+TGG | 0.493683 | 6_4:-31697903 | None:intergenic |
| GGCTTCTTAGGTGGTGGTGG+AGG | 0.495363 | 6_4:-31698089 | None:intergenic |
| GGTGACTTGTAATAGTAATA+GGG | 0.497501 | 6_4:-31697987 | None:intergenic |
| TACTTATATATTGGTGGTGG+AGG | 0.497685 | 6_4:-31697861 | None:intergenic |
| TAGGGCTTCCTATGTGGTGG+TGG | 0.509045 | 6_4:-31698053 | None:intergenic |
| GGAGGAAATTGGTACTTGTA+GGG | 0.509991 | 6_4:-31698071 | None:intergenic |
| GGAGGTGATGAGTATTTGTA+GGG | 0.512210 | 6_4:-31697843 | None:intergenic |
| TGTAATAGTAGTAGGGTGTT+CGG | 0.516719 | 6_4:-31698022 | None:intergenic |
| TAGACTGGTGGTGGTGGAGA+TGG | 0.518812 | 6_4:-31698122 | None:intergenic |
| TAAACTGGTGGTGGAGGTGA+TGG | 0.525705 | 6_4:-31697927 | None:intergenic |
| GGTGGAGATGGATACTTGTA+TGG | 0.527804 | 6_4:-31698110 | None:intergenic |
| TACTTGTAAACTGGTGGTGG+AGG | 0.534343 | 6_4:-31697933 | None:intergenic |
| TTGTAGGGCTTCTTTGGTGG+CGG | 0.534445 | 6_4:-31697900 | None:intergenic |
| TTGTATGGCTTCTTAGGTGG+TGG | 0.542024 | 6_4:-31698095 | None:intergenic |
| AGTGGATATGAGTAATGGTA+AGG | 0.544711 | 6_4:-31697804 | None:intergenic |
| GACTTGTACTTATATATTGG+TGG | 0.550999 | 6_4:-31697867 | None:intergenic |
| TACTTGTAGGGCTTCCTATG+TGG | 0.554747 | 6_4:-31698059 | None:intergenic |
| TTGTACTTGTAAACTGGTGG+TGG | 0.559303 | 6_4:-31697936 | None:intergenic |
| TAATGGTAAGGAAACTTTGG+TGG | 0.559376 | 6_4:-31697792 | None:intergenic |
| TGGTAAGGAAACTTTGGTGG+AGG | 0.559692 | 6_4:-31697789 | None:intergenic |
| TACTTGTATGGCTTCTTAGG+TGG | 0.560678 | 6_4:-31698098 | None:intergenic |
| TTGTACTTATATATTGGTGG+TGG | 0.566101 | 6_4:-31697864 | None:intergenic |
| TAATAGGGTGTTCGACGCGG+TGG | 0.568319 | 6_4:-31697972 | None:intergenic |
| AATAAAGTAAACATGATCGA+TGG | 0.572127 | 6_4:+31699158 | Msa0985320:CDS |
| AAACATGATCGATGGATCGA+TGG | 0.579013 | 6_4:+31699166 | Msa0985320:CDS |
| TTGTACTTGTAGACTGGTGG+TGG | 0.584798 | 6_4:-31698131 | None:intergenic |
| GGTGACTTGTACTTGTAGAC+TGG | 0.589345 | 6_4:-31698137 | None:intergenic |
| GTGGGAGTGGATATGAGTAA+TGG | 0.610863 | 6_4:-31697809 | None:intergenic |
| TAGTAGGGTGTTCGGCGTGG+TGG | 0.610992 | 6_4:-31698014 | None:intergenic |
| GACTTGTACTTGTAGACTGG+TGG | 0.615760 | 6_4:-31698134 | None:intergenic |
| TTGTAGGGCTTCCTATGTGG+TGG | 0.626539 | 6_4:-31698056 | None:intergenic |
| GGTGACCTGTAATAGTAGTA+GGG | 0.628359 | 6_4:-31698029 | None:intergenic |
| TAGTAGTAGGGTGTTCGGCG+TGG | 0.637477 | 6_4:-31698017 | None:intergenic |
| TAGTAATAGGGTGTTCGACG+CGG | 0.647720 | 6_4:-31697975 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATATATATATATATA+TGG | - | chr6_4:31698453-31698472 | None:intergenic | 0.0% |
| !! | AAATAATATATATATATATA+TGG | - | chr6_4:31698453-31698472 | None:intergenic | 0.0% |
| !! | TTTGACAAAACTTATATATA+TGG | + | chr6_4:31698244-31698263 | Msa0985320:intron | 15.0% |
| !! | TTGACAAAACTTATATATAT+GGG | + | chr6_4:31698245-31698264 | Msa0985320:intron | 15.0% |
| !! | ATCATAATTCATTTCATTAT+TGG | + | chr6_4:31698573-31698592 | Msa0985320:intron | 15.0% |
| !! | TTTAAAAATAAAATTGAGCA+AGG | + | chr6_4:31698897-31698916 | Msa0985320:intron | 15.0% |
| !! | TTTGACAAAACTTATATATA+TGG | + | chr6_4:31698244-31698263 | Msa0985320:intron | 15.0% |
| !! | TTGACAAAACTTATATATAT+GGG | + | chr6_4:31698245-31698264 | Msa0985320:intron | 15.0% |
| !! | ATCATAATTCATTTCATTAT+TGG | + | chr6_4:31698573-31698592 | Msa0985320:intron | 15.0% |
| !! | TTTAAAAATAAAATTGAGCA+AGG | + | chr6_4:31698897-31698916 | Msa0985320:intron | 15.0% |
| !! | GCAAAATTATAACTAAAAAG+TGG | + | chr6_4:31698367-31698386 | Msa0985320:intron | 20.0% |
| !! | ATTATTATCATGATCATCAT+CGG | + | chr6_4:31698607-31698626 | Msa0985320:intron | 20.0% |
| !! | AATTAAATATTAACCTACGA+CGG | - | chr6_4:31698812-31698831 | None:intergenic | 20.0% |
| !! | ATAAATGGTGAATAAATACT+TGG | + | chr6_4:31699066-31699085 | Msa0985320:intron | 20.0% |
| !! | TAAATGGTGAATAAATACTT+GGG | + | chr6_4:31699067-31699086 | Msa0985320:intron | 20.0% |
| !! | CACACATATATATTATTAGT+TGG | - | chr6_4:31699105-31699124 | None:intergenic | 20.0% |
| !! | GCAAAATTATAACTAAAAAG+TGG | + | chr6_4:31698367-31698386 | Msa0985320:intron | 20.0% |
| !! | ATTATTATCATGATCATCAT+CGG | + | chr6_4:31698607-31698626 | Msa0985320:intron | 20.0% |
| !! | AATTAAATATTAACCTACGA+CGG | - | chr6_4:31698812-31698831 | None:intergenic | 20.0% |
| !! | ATAAATGGTGAATAAATACT+TGG | + | chr6_4:31699066-31699085 | Msa0985320:intron | 20.0% |
| !! | TAAATGGTGAATAAATACTT+GGG | + | chr6_4:31699067-31699086 | Msa0985320:intron | 20.0% |
| !! | CACACATATATATTATTAGT+TGG | - | chr6_4:31699105-31699124 | None:intergenic | 20.0% |
| ! | TAACTATTTAGTAGTGGTAA+GGG | - | chr6_4:31698169-31698188 | None:intergenic | 25.0% |
| ! | TACTACTAACTATTTAGTAG+TGG | - | chr6_4:31698175-31698194 | None:intergenic | 25.0% |
| ! | AAACATACCATATGTACTAA+GGG | - | chr6_4:31698201-31698220 | None:intergenic | 25.0% |
| ! | CTAAAAAACACCTTCATAAA+AGG | - | chr6_4:31698286-31698305 | None:intergenic | 25.0% |
| !! | ACACCAACTAATTTTTATGA+AGG | + | chr6_4:31698335-31698354 | Msa0985320:intron | 25.0% |
| ! | ACACCTTCATAAAAATTAGT+TGG | - | chr6_4:31698341-31698360 | None:intergenic | 25.0% |
| ! | TCAATCTTCACAACTATTAT+AGG | + | chr6_4:31698485-31698504 | Msa0985320:intron | 25.0% |
| ! | CAATCTTCACAACTATTATA+GGG | + | chr6_4:31698486-31698505 | Msa0985320:intron | 25.0% |
| !! | TTATAGGGTTCTAATCAATA+TGG | + | chr6_4:31698501-31698520 | Msa0985320:intron | 25.0% |
| !!! | CTCACACAAGTTTTTAATTA+TGG | + | chr6_4:31698529-31698548 | Msa0985320:intron | 25.0% |
| !!! | TTTTTAATTATGGACCATTG+AGG | + | chr6_4:31698539-31698558 | Msa0985320:intron | 25.0% |
| ! | ATTATTAGTTGGTCATAAAC+TGG | - | chr6_4:31699094-31699113 | None:intergenic | 25.0% |
| ! | AATAAAGTAAACATGATCGA+TGG | + | chr6_4:31699158-31699177 | Msa0985320:CDS | 25.0% |
| ! | TAACTATTTAGTAGTGGTAA+GGG | - | chr6_4:31698169-31698188 | None:intergenic | 25.0% |
| ! | TACTACTAACTATTTAGTAG+TGG | - | chr6_4:31698175-31698194 | None:intergenic | 25.0% |
| ! | AAACATACCATATGTACTAA+GGG | - | chr6_4:31698201-31698220 | None:intergenic | 25.0% |
| ! | CTAAAAAACACCTTCATAAA+AGG | - | chr6_4:31698286-31698305 | None:intergenic | 25.0% |
| !! | ACACCAACTAATTTTTATGA+AGG | + | chr6_4:31698335-31698354 | Msa0985320:intron | 25.0% |
| ! | ACACCTTCATAAAAATTAGT+TGG | - | chr6_4:31698341-31698360 | None:intergenic | 25.0% |
| ! | TCAATCTTCACAACTATTAT+AGG | + | chr6_4:31698485-31698504 | Msa0985320:intron | 25.0% |
| ! | CAATCTTCACAACTATTATA+GGG | + | chr6_4:31698486-31698505 | Msa0985320:intron | 25.0% |
| !! | TTATAGGGTTCTAATCAATA+TGG | + | chr6_4:31698501-31698520 | Msa0985320:intron | 25.0% |
| !!! | CTCACACAAGTTTTTAATTA+TGG | + | chr6_4:31698529-31698548 | Msa0985320:intron | 25.0% |
| !!! | TTTTTAATTATGGACCATTG+AGG | + | chr6_4:31698539-31698558 | Msa0985320:intron | 25.0% |
| ! | ATTATTAGTTGGTCATAAAC+TGG | - | chr6_4:31699094-31699113 | None:intergenic | 25.0% |
| ! | AATAAAGTAAACATGATCGA+TGG | + | chr6_4:31699158-31699177 | Msa0985320:CDS | 25.0% |
| TACTTATAAGGTTTCTTTGG+TGG | - | chr6_4:31697759-31697778 | None:intergenic | 30.0% | |
| GGATACTTATAAGGTTTCTT+TGG | - | chr6_4:31697762-31697781 | None:intergenic | 30.0% | |
| !!! | TATTTGTAGGGTTTTTTAGG+AGG | - | chr6_4:31697834-31697853 | None:intergenic | 30.0% |
| !!! | GAGTATTTGTAGGGTTTTTT+AGG | - | chr6_4:31697837-31697856 | None:intergenic | 30.0% |
| TTGTACTTATATATTGGTGG+TGG | - | chr6_4:31697867-31697886 | None:intergenic | 30.0% | |
| GACTTGTACTTATATATTGG+TGG | - | chr6_4:31697870-31697889 | None:intergenic | 30.0% | |
| GGAGACTTGTACTTATATAT+TGG | - | chr6_4:31697873-31697892 | None:intergenic | 30.0% | |
| ! | GGTGACTTGTAATAGTAATA+GGG | - | chr6_4:31697990-31698009 | None:intergenic | 30.0% |
| ! | TGGTGACTTGTAATAGTAAT+AGG | - | chr6_4:31697991-31698010 | None:intergenic | 30.0% |
| AACTATTTAGTAGTGGTAAG+GGG | - | chr6_4:31698168-31698187 | None:intergenic | 30.0% | |
| CTAACTATTTAGTAGTGGTA+AGG | - | chr6_4:31698170-31698189 | None:intergenic | 30.0% | |
| AGTATATCCCTTAGTACATA+TGG | + | chr6_4:31698191-31698210 | Msa0985320:intron | 30.0% | |
| GAAACATACCATATGTACTA+AGG | - | chr6_4:31698202-31698221 | None:intergenic | 30.0% | |
| ATTGCTAAAAGACACATTCA+TGG | + | chr6_4:31698411-31698430 | Msa0985320:intron | 30.0% | |
| TTGCTAAAAGACACATTCAT+GGG | + | chr6_4:31698412-31698431 | Msa0985320:intron | 30.0% | |
| GATATAACCTTTAACCTCAA+TGG | - | chr6_4:31698556-31698575 | None:intergenic | 30.0% | |
| !! | TTTTAAAAAATAGCCGTCGT+AGG | + | chr6_4:31698796-31698815 | Msa0985320:intron | 30.0% |
| TGACAGTCTAGACAAATAAA+TGG | + | chr6_4:31699051-31699070 | Msa0985320:intron | 30.0% | |
| ! | CTTTATTTGCAACTGTTCTT+CGG | - | chr6_4:31699145-31699164 | None:intergenic | 30.0% |
| TACTTATAAGGTTTCTTTGG+TGG | - | chr6_4:31697759-31697778 | None:intergenic | 30.0% | |
| GGATACTTATAAGGTTTCTT+TGG | - | chr6_4:31697762-31697781 | None:intergenic | 30.0% | |
| !!! | TATTTGTAGGGTTTTTTAGG+AGG | - | chr6_4:31697834-31697853 | None:intergenic | 30.0% |
| !!! | GAGTATTTGTAGGGTTTTTT+AGG | - | chr6_4:31697837-31697856 | None:intergenic | 30.0% |
| TTGTACTTATATATTGGTGG+TGG | - | chr6_4:31697867-31697886 | None:intergenic | 30.0% | |
| GACTTGTACTTATATATTGG+TGG | - | chr6_4:31697870-31697889 | None:intergenic | 30.0% | |
| GGAGACTTGTACTTATATAT+TGG | - | chr6_4:31697873-31697892 | None:intergenic | 30.0% | |
| ! | GGTGACTTGTAATAGTAATA+GGG | - | chr6_4:31697990-31698009 | None:intergenic | 30.0% |
| ! | TGGTGACTTGTAATAGTAAT+AGG | - | chr6_4:31697991-31698010 | None:intergenic | 30.0% |
| AACTATTTAGTAGTGGTAAG+GGG | - | chr6_4:31698168-31698187 | None:intergenic | 30.0% | |
| CTAACTATTTAGTAGTGGTA+AGG | - | chr6_4:31698170-31698189 | None:intergenic | 30.0% | |
| AGTATATCCCTTAGTACATA+TGG | + | chr6_4:31698191-31698210 | Msa0985320:intron | 30.0% | |
| GAAACATACCATATGTACTA+AGG | - | chr6_4:31698202-31698221 | None:intergenic | 30.0% | |
| ATTGCTAAAAGACACATTCA+TGG | + | chr6_4:31698411-31698430 | Msa0985320:intron | 30.0% | |
| TTGCTAAAAGACACATTCAT+GGG | + | chr6_4:31698412-31698431 | Msa0985320:intron | 30.0% | |
| GATATAACCTTTAACCTCAA+TGG | - | chr6_4:31698556-31698575 | None:intergenic | 30.0% | |
| !! | TTTTAAAAAATAGCCGTCGT+AGG | + | chr6_4:31698796-31698815 | Msa0985320:intron | 30.0% |
| TGACAGTCTAGACAAATAAA+TGG | + | chr6_4:31699051-31699070 | Msa0985320:intron | 30.0% | |
| ! | CTTTATTTGCAACTGTTCTT+CGG | - | chr6_4:31699145-31699164 | None:intergenic | 30.0% |
| TAATGGTAAGGAAACTTTGG+TGG | - | chr6_4:31697795-31697814 | None:intergenic | 35.0% | |
| GAGTAATGGTAAGGAAACTT+TGG | - | chr6_4:31697798-31697817 | None:intergenic | 35.0% | |
| AGTGGATATGAGTAATGGTA+AGG | - | chr6_4:31697807-31697826 | None:intergenic | 35.0% | |
| !! | TACTTATATATTGGTGGTGG+AGG | - | chr6_4:31697864-31697883 | None:intergenic | 35.0% |
| GATTTGTACTTGTAAACTGG+TGG | - | chr6_4:31697942-31697961 | None:intergenic | 35.0% | |
| GGAGATTTGTACTTGTAAAC+TGG | - | chr6_4:31697945-31697964 | None:intergenic | 35.0% | |
| ! | TGTAATAGTAGTAGGGTGTT+CGG | - | chr6_4:31698025-31698044 | None:intergenic | 35.0% |
| ACTATTTAGTAGTGGTAAGG+GGG | - | chr6_4:31698167-31698186 | None:intergenic | 35.0% | |
| ! | CTAGAAGACACCTTTTATGA+AGG | + | chr6_4:31698273-31698292 | Msa0985320:intron | 35.0% |
| TTATGGACCATTGAGGTTAA+AGG | + | chr6_4:31698546-31698565 | Msa0985320:intron | 35.0% | |
| ! | TATGTGTGCACACTTTTCTT+AGG | + | chr6_4:31699117-31699136 | Msa0985320:intron | 35.0% |
| TAATGGTAAGGAAACTTTGG+TGG | - | chr6_4:31697795-31697814 | None:intergenic | 35.0% | |
| GAGTAATGGTAAGGAAACTT+TGG | - | chr6_4:31697798-31697817 | None:intergenic | 35.0% | |
| AGTGGATATGAGTAATGGTA+AGG | - | chr6_4:31697807-31697826 | None:intergenic | 35.0% | |
| !! | TACTTATATATTGGTGGTGG+AGG | - | chr6_4:31697864-31697883 | None:intergenic | 35.0% |
| GATTTGTACTTGTAAACTGG+TGG | - | chr6_4:31697942-31697961 | None:intergenic | 35.0% | |
| GGAGATTTGTACTTGTAAAC+TGG | - | chr6_4:31697945-31697964 | None:intergenic | 35.0% | |
| ! | TGTAATAGTAGTAGGGTGTT+CGG | - | chr6_4:31698025-31698044 | None:intergenic | 35.0% |
| ACTATTTAGTAGTGGTAAGG+GGG | - | chr6_4:31698167-31698186 | None:intergenic | 35.0% | |
| ! | CTAGAAGACACCTTTTATGA+AGG | + | chr6_4:31698273-31698292 | Msa0985320:intron | 35.0% |
| TTATGGACCATTGAGGTTAA+AGG | + | chr6_4:31698546-31698565 | Msa0985320:intron | 35.0% | |
| ! | TATGTGTGCACACTTTTCTT+AGG | + | chr6_4:31699117-31699136 | Msa0985320:intron | 35.0% |
| !! | TAAGGTTTCTTTGGTGGTGA+TGG | - | chr6_4:31697753-31697772 | None:intergenic | 40.0% |
| GGTGGTGAAGGATACTTATA+AGG | - | chr6_4:31697771-31697790 | None:intergenic | 40.0% | |
| !!! | TGTAGGGTTTTTTAGGAGGT+GGG | - | chr6_4:31697830-31697849 | None:intergenic | 40.0% |
| !!! | TTGTAGGGTTTTTTAGGAGG+TGG | - | chr6_4:31697831-31697850 | None:intergenic | 40.0% |
| GGAGGTGATGAGTATTTGTA+GGG | - | chr6_4:31697846-31697865 | None:intergenic | 40.0% | |
| TGGAGGTGATGAGTATTTGT+AGG | - | chr6_4:31697847-31697866 | None:intergenic | 40.0% | |
| TATTTGTAGGGCTTCTTTGG+TGG | - | chr6_4:31697906-31697925 | None:intergenic | 40.0% | |
| GGATATTTGTAGGGCTTCTT+TGG | - | chr6_4:31697909-31697928 | None:intergenic | 40.0% | |
| !! | GGAGGTGATGGATATTTGTA+GGG | - | chr6_4:31697918-31697937 | None:intergenic | 40.0% |
| !! | TGGAGGTGATGGATATTTGT+AGG | - | chr6_4:31697919-31697938 | None:intergenic | 40.0% |
| TTGTACTTGTAAACTGGTGG+TGG | - | chr6_4:31697939-31697958 | None:intergenic | 40.0% | |
| GAACACCCTACTACTATTAC+AGG | + | chr6_4:31698024-31698043 | Msa0985320:CDS | 40.0% | |
| GGTGACCTGTAATAGTAGTA+GGG | - | chr6_4:31698032-31698051 | None:intergenic | 40.0% | |
| TGGTGACCTGTAATAGTAGT+AGG | - | chr6_4:31698033-31698052 | None:intergenic | 40.0% | |
| GGAGGAAATTGGTACTTGTA+GGG | - | chr6_4:31698074-31698093 | None:intergenic | 40.0% | |
| TGGAGGAAATTGGTACTTGT+AGG | - | chr6_4:31698075-31698094 | None:intergenic | 40.0% | |
| TACTTGTATGGCTTCTTAGG+TGG | - | chr6_4:31698101-31698120 | None:intergenic | 40.0% | |
| GGATACTTGTATGGCTTCTT+AGG | - | chr6_4:31698104-31698123 | None:intergenic | 40.0% | |
| AAAGTGGAAATCACACCTTG+AGG | + | chr6_4:31698383-31698402 | Msa0985320:intron | 40.0% | |
| ! | TTTTAGCAATCCACACCTCA+AGG | - | chr6_4:31698401-31698420 | None:intergenic | 40.0% |
| AAAGTCAAGCTTTCACTACC+AGG | + | chr6_4:31698935-31698954 | Msa0985320:intron | 40.0% | |
| ! | TTGTCTAAGATATGTCAGCC+TGG | - | chr6_4:31698956-31698975 | None:intergenic | 40.0% |
| AAACATGATCGATGGATCGA+TGG | + | chr6_4:31699166-31699185 | Msa0985320:CDS | 40.0% | |
| !! | TAAGGTTTCTTTGGTGGTGA+TGG | - | chr6_4:31697753-31697772 | None:intergenic | 40.0% |
| GGTGGTGAAGGATACTTATA+AGG | - | chr6_4:31697771-31697790 | None:intergenic | 40.0% | |
| !!! | TGTAGGGTTTTTTAGGAGGT+GGG | - | chr6_4:31697830-31697849 | None:intergenic | 40.0% |
| !!! | TTGTAGGGTTTTTTAGGAGG+TGG | - | chr6_4:31697831-31697850 | None:intergenic | 40.0% |
| GGAGGTGATGAGTATTTGTA+GGG | - | chr6_4:31697846-31697865 | None:intergenic | 40.0% | |
| TGGAGGTGATGAGTATTTGT+AGG | - | chr6_4:31697847-31697866 | None:intergenic | 40.0% | |
| TATTTGTAGGGCTTCTTTGG+TGG | - | chr6_4:31697906-31697925 | None:intergenic | 40.0% | |
| GGATATTTGTAGGGCTTCTT+TGG | - | chr6_4:31697909-31697928 | None:intergenic | 40.0% | |
| !! | GGAGGTGATGGATATTTGTA+GGG | - | chr6_4:31697918-31697937 | None:intergenic | 40.0% |
| !! | TGGAGGTGATGGATATTTGT+AGG | - | chr6_4:31697919-31697938 | None:intergenic | 40.0% |
| TTGTACTTGTAAACTGGTGG+TGG | - | chr6_4:31697939-31697958 | None:intergenic | 40.0% | |
| GAACACCCTACTACTATTAC+AGG | + | chr6_4:31698024-31698043 | Msa0985320:CDS | 40.0% | |
| GGTGACCTGTAATAGTAGTA+GGG | - | chr6_4:31698032-31698051 | None:intergenic | 40.0% | |
| TGGTGACCTGTAATAGTAGT+AGG | - | chr6_4:31698033-31698052 | None:intergenic | 40.0% | |
| GGAGGAAATTGGTACTTGTA+GGG | - | chr6_4:31698074-31698093 | None:intergenic | 40.0% | |
| TGGAGGAAATTGGTACTTGT+AGG | - | chr6_4:31698075-31698094 | None:intergenic | 40.0% | |
| TACTTGTATGGCTTCTTAGG+TGG | - | chr6_4:31698101-31698120 | None:intergenic | 40.0% | |
| GGATACTTGTATGGCTTCTT+AGG | - | chr6_4:31698104-31698123 | None:intergenic | 40.0% | |
| AAAGTGGAAATCACACCTTG+AGG | + | chr6_4:31698383-31698402 | Msa0985320:intron | 40.0% | |
| ! | TTTTAGCAATCCACACCTCA+AGG | - | chr6_4:31698401-31698420 | None:intergenic | 40.0% |
| AAAGTCAAGCTTTCACTACC+AGG | + | chr6_4:31698935-31698954 | Msa0985320:intron | 40.0% | |
| ! | TTGTCTAAGATATGTCAGCC+TGG | - | chr6_4:31698956-31698975 | None:intergenic | 40.0% |
| AAACATGATCGATGGATCGA+TGG | + | chr6_4:31699166-31699185 | Msa0985320:CDS | 40.0% | |
| TAAGGAAACTTTGGTGGAGG+TGG | - | chr6_4:31697789-31697808 | None:intergenic | 45.0% | |
| TGGTAAGGAAACTTTGGTGG+AGG | - | chr6_4:31697792-31697811 | None:intergenic | 45.0% | |
| GTGGGAGTGGATATGAGTAA+TGG | - | chr6_4:31697812-31697831 | None:intergenic | 45.0% | |
| !! | TACTTGTAAACTGGTGGTGG+AGG | - | chr6_4:31697936-31697955 | None:intergenic | 45.0% |
| ! | TAGTAATAGGGTGTTCGACG+CGG | - | chr6_4:31697978-31697997 | None:intergenic | 45.0% |
| TACTTGTAGGGCTTCCTATG+TGG | - | chr6_4:31698062-31698081 | None:intergenic | 45.0% | |
| TTGTATGGCTTCTTAGGTGG+TGG | - | chr6_4:31698098-31698117 | None:intergenic | 45.0% | |
| GGTGGAGATGGATACTTGTA+TGG | - | chr6_4:31698113-31698132 | None:intergenic | 45.0% | |
| TTGTACTTGTAGACTGGTGG+TGG | - | chr6_4:31698134-31698153 | None:intergenic | 45.0% | |
| GACTTGTACTTGTAGACTGG+TGG | - | chr6_4:31698137-31698156 | None:intergenic | 45.0% | |
| ! | GGTGACTTGTACTTGTAGAC+TGG | - | chr6_4:31698140-31698159 | None:intergenic | 45.0% |
| ATTTAGTAGTGGTAAGGGGG+AGG | - | chr6_4:31698164-31698183 | None:intergenic | 45.0% | |
| TAAGGAAACTTTGGTGGAGG+TGG | - | chr6_4:31697789-31697808 | None:intergenic | 45.0% | |
| TGGTAAGGAAACTTTGGTGG+AGG | - | chr6_4:31697792-31697811 | None:intergenic | 45.0% | |
| GTGGGAGTGGATATGAGTAA+TGG | - | chr6_4:31697812-31697831 | None:intergenic | 45.0% | |
| !! | TACTTGTAAACTGGTGGTGG+AGG | - | chr6_4:31697936-31697955 | None:intergenic | 45.0% |
| ! | TAGTAATAGGGTGTTCGACG+CGG | - | chr6_4:31697978-31697997 | None:intergenic | 45.0% |
| TACTTGTAGGGCTTCCTATG+TGG | - | chr6_4:31698062-31698081 | None:intergenic | 45.0% | |
| TTGTATGGCTTCTTAGGTGG+TGG | - | chr6_4:31698098-31698117 | None:intergenic | 45.0% | |
| GGTGGAGATGGATACTTGTA+TGG | - | chr6_4:31698113-31698132 | None:intergenic | 45.0% | |
| TTGTACTTGTAGACTGGTGG+TGG | - | chr6_4:31698134-31698153 | None:intergenic | 45.0% | |
| GACTTGTACTTGTAGACTGG+TGG | - | chr6_4:31698137-31698156 | None:intergenic | 45.0% | |
| ! | GGTGACTTGTACTTGTAGAC+TGG | - | chr6_4:31698140-31698159 | None:intergenic | 45.0% |
| ATTTAGTAGTGGTAAGGGGG+AGG | - | chr6_4:31698164-31698183 | None:intergenic | 45.0% | |
| AACTTTGGTGGAGGTGGTGA+AGG | - | chr6_4:31697783-31697802 | None:intergenic | 50.0% | |
| !!! | GGTTTTTTAGGAGGTGGGAG+TGG | - | chr6_4:31697825-31697844 | None:intergenic | 50.0% |
| TTGTAGGGCTTCTTTGGTGG+CGG | - | chr6_4:31697903-31697922 | None:intergenic | 50.0% | |
| !! | TAAACTGGTGGTGGAGGTGA+TGG | - | chr6_4:31697930-31697949 | None:intergenic | 50.0% |
| TTGTAGGGCTTCCTATGTGG+TGG | - | chr6_4:31698059-31698078 | None:intergenic | 50.0% | |
| !! | TAGGTGGTGGTGGAGGAAAT+TGG | - | chr6_4:31698085-31698104 | None:intergenic | 50.0% |
| ! | TATGGCTTCTTAGGTGGTGG+TGG | - | chr6_4:31698095-31698114 | None:intergenic | 50.0% |
| !! | TACTTGTAGACTGGTGGTGG+TGG | - | chr6_4:31698131-31698150 | None:intergenic | 50.0% |
| GGAAATCACACCTTGAGGTG+TGG | + | chr6_4:31698388-31698407 | Msa0985320:intron | 50.0% | |
| AACTTTGGTGGAGGTGGTGA+AGG | - | chr6_4:31697783-31697802 | None:intergenic | 50.0% | |
| !!! | GGTTTTTTAGGAGGTGGGAG+TGG | - | chr6_4:31697825-31697844 | None:intergenic | 50.0% |
| TTGTAGGGCTTCTTTGGTGG+CGG | - | chr6_4:31697903-31697922 | None:intergenic | 50.0% | |
| !! | TAAACTGGTGGTGGAGGTGA+TGG | - | chr6_4:31697930-31697949 | None:intergenic | 50.0% |
| TTGTAGGGCTTCCTATGTGG+TGG | - | chr6_4:31698059-31698078 | None:intergenic | 50.0% | |
| !! | TAGGTGGTGGTGGAGGAAAT+TGG | - | chr6_4:31698085-31698104 | None:intergenic | 50.0% |
| ! | TATGGCTTCTTAGGTGGTGG+TGG | - | chr6_4:31698095-31698114 | None:intergenic | 50.0% |
| !! | TACTTGTAGACTGGTGGTGG+TGG | - | chr6_4:31698131-31698150 | None:intergenic | 50.0% |
| GGAAATCACACCTTGAGGTG+TGG | + | chr6_4:31698388-31698407 | Msa0985320:intron | 50.0% | |
| ! | TAATAGGGTGTTCGACGCGG+TGG | - | chr6_4:31697975-31697994 | None:intergenic | 55.0% |
| ! | TAGTAGTAGGGTGTTCGGCG+TGG | - | chr6_4:31698020-31698039 | None:intergenic | 55.0% |
| TAGGGCTTCCTATGTGGTGG+TGG | - | chr6_4:31698056-31698075 | None:intergenic | 55.0% | |
| !! | TAGACTGGTGGTGGTGGAGA+TGG | - | chr6_4:31698125-31698144 | None:intergenic | 55.0% |
| TAGTAGTGGTAAGGGGGAGG+AGG | - | chr6_4:31698161-31698180 | None:intergenic | 55.0% | |
| ! | TAATAGGGTGTTCGACGCGG+TGG | - | chr6_4:31697975-31697994 | None:intergenic | 55.0% |
| ! | TAGTAGTAGGGTGTTCGGCG+TGG | - | chr6_4:31698020-31698039 | None:intergenic | 55.0% |
| TAGGGCTTCCTATGTGGTGG+TGG | - | chr6_4:31698056-31698075 | None:intergenic | 55.0% | |
| !! | TAGACTGGTGGTGGTGGAGA+TGG | - | chr6_4:31698125-31698144 | None:intergenic | 55.0% |
| TAGTAGTGGTAAGGGGGAGG+AGG | - | chr6_4:31698161-31698180 | None:intergenic | 55.0% | |
| !! | TAGGGCTTCTTTGGTGGCGG+TGG | - | chr6_4:31697900-31697919 | None:intergenic | 60.0% |
| ! | TAGTAGGGTGTTCGGCGTGG+TGG | - | chr6_4:31698017-31698036 | None:intergenic | 60.0% |
| GGTCACCACCACCACCACAT+AGG | + | chr6_4:31698045-31698064 | Msa0985320:CDS | 60.0% | |
| !! | GGCTTCCTATGTGGTGGTGG+TGG | - | chr6_4:31698053-31698072 | None:intergenic | 60.0% |
| !! | GGCTTCTTAGGTGGTGGTGG+AGG | - | chr6_4:31698092-31698111 | None:intergenic | 60.0% |
| !! | TAGGGCTTCTTTGGTGGCGG+TGG | - | chr6_4:31697900-31697919 | None:intergenic | 60.0% |
| ! | TAGTAGGGTGTTCGGCGTGG+TGG | - | chr6_4:31698017-31698036 | None:intergenic | 60.0% |
| GGTCACCACCACCACCACAT+AGG | + | chr6_4:31698045-31698064 | Msa0985320:CDS | 60.0% | |
| !! | GGCTTCCTATGTGGTGGTGG+TGG | - | chr6_4:31698053-31698072 | None:intergenic | 60.0% |
| !! | GGCTTCTTAGGTGGTGGTGG+AGG | - | chr6_4:31698092-31698111 | None:intergenic | 60.0% |
| !! | TTCTTTGGTGGCGGTGGCGG+AGG | - | chr6_4:31697894-31697913 | None:intergenic | 65.0% |
| !! | GGCTTCTTTGGTGGCGGTGG+CGG | - | chr6_4:31697897-31697916 | None:intergenic | 65.0% |
| ! | TAGGGTGTTCGACGCGGTGG+TGG | - | chr6_4:31697972-31697991 | None:intergenic | 65.0% |
| ! | TAGGGTGTTCGGCGTGGTGG+TGG | - | chr6_4:31698014-31698033 | None:intergenic | 65.0% |
| !! | TTCTTTGGTGGCGGTGGCGG+AGG | - | chr6_4:31697894-31697913 | None:intergenic | 65.0% |
| !! | GGCTTCTTTGGTGGCGGTGG+CGG | - | chr6_4:31697897-31697916 | None:intergenic | 65.0% |
| ! | TAGGGTGTTCGACGCGGTGG+TGG | - | chr6_4:31697972-31697991 | None:intergenic | 65.0% |
| ! | TAGGGTGTTCGGCGTGGTGG+TGG | - | chr6_4:31698014-31698033 | None:intergenic | 65.0% |
| !! | GTTCGACGCGGTGGTGGTGG+TGG | - | chr6_4:31697966-31697985 | None:intergenic | 70.0% |
| ! | GGTGTTCGACGCGGTGGTGG+TGG | - | chr6_4:31697969-31697988 | None:intergenic | 70.0% |
| !! | GGTGTTCGGCGTGGTGGTGG+TGG | - | chr6_4:31698011-31698030 | None:intergenic | 70.0% |
| !! | GTTCGACGCGGTGGTGGTGG+TGG | - | chr6_4:31697966-31697985 | None:intergenic | 70.0% |
| ! | GGTGTTCGACGCGGTGGTGG+TGG | - | chr6_4:31697969-31697988 | None:intergenic | 70.0% |
| !! | GGTGTTCGGCGTGGTGGTGG+TGG | - | chr6_4:31698011-31698030 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 31697726 | 31699195 | 31697726 | ID=Msa0985320;Name=Msa0985320 |
| chr6_4 | mRNA | 31697726 | 31699195 | 31697726 | ID=Msa0985320-mRNA-1;Parent=Msa0985320;Name=Msa0985320-mRNA-1;_AED=0.40;_eAED=0.83;_QI=0|0|0.33|0.66|0.5|0.33|3|2|155 |
| chr6_4 | exon | 31697726 | 31697944 | 31697726 | ID=Msa0985320-mRNA-1:exon:8462;Parent=Msa0985320-mRNA-1 |
| chr6_4 | exon | 31697954 | 31698147 | 31697954 | ID=Msa0985320-mRNA-1:exon:8463;Parent=Msa0985320-mRNA-1 |
| chr6_4 | exon | 31699139 | 31699195 | 31699139 | ID=Msa0985320-mRNA-1:exon:8464;Parent=Msa0985320-mRNA-1 |
| chr6_4 | CDS | 31697726 | 31697944 | 31697726 | ID=Msa0985320-mRNA-1:cds;Parent=Msa0985320-mRNA-1 |
| chr6_4 | CDS | 31697954 | 31698147 | 31697954 | ID=Msa0985320-mRNA-1:cds;Parent=Msa0985320-mRNA-1 |
| chr6_4 | CDS | 31699139 | 31699193 | 31699139 | ID=Msa0985320-mRNA-1:cds;Parent=Msa0985320-mRNA-1 |
| chr6_4 | three_prime_UTR | 31699194 | 31699195 | 31699194 | ID=Msa0985320-mRNA-1:three_prime_utr;Parent=Msa0985320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
