AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0728570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0728570 MtrunA17_Chr5g0420951 82.451 359 10 2 1 306 1 359 0.0 585
Msa0728570 MtrunA17_Chr8g0365241 69.748 357 56 1 1 305 6 362 0.0 503
Msa0728570 MtrunA17_Chr5g0420981 66.854 356 65 2 1 303 1 356 3.64e-171 478
Msa0728570 MtrunA17_Chr5g0423191 56.374 353 101 2 6 306 1 352 7.02e-144 409
Msa0728570 MtrunA17_Chr5g0420941 56.686 344 96 2 11 302 4 346 1.40e-137 393
Msa0728570 MtrunA17_Chr5g0421041 54.441 349 104 3 10 306 5 350 2.01e-135 387
Msa0728570 MtrunA17_Chr5g0423251 54.335 346 105 2 10 303 5 349 2.16e-134 385
Msa0728570 MtrunA17_Chr5g0420901 52.722 349 111 3 10 305 3 350 2.28e-129 372
Msa0728570 MtrunA17_Chr5g0421101 53.890 347 107 2 10 304 5 350 2.69e-129 372
Msa0728570 MtrunA17_Chr5g0421091 53.314 347 108 3 11 304 4 349 2.91e-127 367
Msa0728570 MtrunA17_Chr5g0421011 54.441 349 106 2 10 306 5 352 3.32e-126 364
Msa0728570 MtrunA17_Chr5g0423221 52.450 347 111 3 10 303 29 374 6.38e-126 364
Msa0728570 MtrunA17_Chr5g0423201 51.873 347 113 3 10 303 5 350 3.60e-123 356
Msa0728570 MtrunA17_Chr8g0375671 48.711 349 124 2 12 305 12 360 2.52e-120 350
Msa0728570 MtrunA17_Chr5g0423211 50.568 352 115 5 10 304 3 352 4.82e-119 346
Msa0728570 MtrunA17_Chr2g0314391 49.425 348 123 2 10 304 28 375 6.74e-115 336
Msa0728570 MtrunA17_Chr2g0314401 48.555 346 125 2 10 302 9 354 1.39e-113 332
Msa0728570 MtrunA17_Chr8g0375571 47.839 347 126 2 11 302 4 350 1.84e-112 329
Msa0728570 MtrunA17_Chr2g0314381 49.284 349 123 3 10 304 34 382 3.90e-112 329
Msa0728570 MtrunA17_Chr8g0375601 48.266 346 122 3 15 303 8 353 1.45e-111 327
Msa0728570 MtrunA17_Chr1g0162191 43.380 355 141 5 6 305 5 354 1.25e-95 286
Msa0728570 MtrunA17_Chr5g0420721 50.201 249 72 1 109 305 5 253 5.29e-88 263
Msa0728570 MtrunA17_Chr8g0375681 45.588 272 96 1 84 303 15 286 2.90e-81 248
Msa0728570 MtrunA17_Chr2g0314371 51.883 239 91 3 10 224 9 247 9.22e-78 240
Msa0728570 MtrunA17_Chr8g0375701 34.174 357 178 5 1 302 1 355 1.43e-73 230
Msa0728570 MtrunA17_Chr3g0087031 35.613 351 168 5 7 302 13 360 2.80e-68 216
Msa0728570 MtrunA17_Chr7g0239821 32.471 348 181 3 12 306 23 369 1.23e-64 207
Msa0728570 MtrunA17_Chr2g0296371 33.237 346 172 4 15 303 14 357 2.06e-64 207
Msa0728570 MtrunA17_Chr8g0375641 55.030 169 73 1 1 166 1 169 3.25e-63 197
Msa0728570 MtrunA17_Chr7g0239101 32.174 345 180 3 12 303 14 357 6.81e-63 202
Msa0728570 MtrunA17_Chr8g0375661 57.595 158 64 1 12 166 12 169 2.02e-62 195
Msa0728570 MtrunA17_Chr5g0420891 61.392 158 59 2 10 166 3 159 1.33e-60 190
Msa0728570 MtrunA17_Chr7g0239121 31.897 348 182 3 12 305 10 356 9.52e-60 194
Msa0728570 MtrunA17_Chr7g0239111 30.725 345 185 3 12 303 14 357 6.94e-59 192
Msa0728570 MtrunA17_Chr5g0437181 29.532 342 183 4 18 301 14 355 6.66e-51 171
Msa0728570 MtrunA17_Chr7g0242551 28.736 348 181 6 18 300 15 360 1.12e-48 166
Msa0728570 MtrunA17_Chr3g0113641 27.193 342 191 4 18 301 15 356 1.44e-46 160
Msa0728570 MtrunA17_Chr7g0232161 36.239 218 137 2 8 224 15 231 5.34e-46 158
Msa0728570 MtrunA17_Chr4g0006371 25.543 368 202 4 5 300 1 368 2.74e-44 154
Msa0728570 MtrunA17_Chr8g0375591 57.480 127 50 2 12 134 5 131 3.39e-43 144
Msa0728570 MtrunA17_Chr7g0239091 28.116 345 182 6 12 302 119 451 6.23e-43 153
Msa0728570 MtrunA17_Chr3g0145171 29.126 309 163 4 48 302 48 354 3.71e-42 149
Msa0728570 MtrunA17_Chr3g0109041 26.801 347 192 6 18 304 10 354 2.78e-39 141
Msa0728570 MtrunA17_Chr5g0426891 28.242 347 181 9 17 302 3 342 5.61e-39 140
Msa0728570 MtrunA17_Chr3g0128001 28.049 328 179 4 27 301 13 336 6.77e-39 139
Msa0728570 MtrunA17_Chr7g0239071 27.211 294 159 3 62 303 12 302 1.02e-38 139
Msa0728570 MtrunA17_Chr8g0370711 28.696 345 183 6 17 302 14 354 8.84e-36 132
Msa0728570 MtrunA17_Chr8g0370721 28.696 345 183 6 17 302 14 354 1.78e-35 131
Msa0728570 MtrunA17_Chr5g0398291 27.640 322 168 6 18 274 8 329 2.98e-34 127
Msa0728570 MtrunA17_Chr4g0064781 28.247 308 159 6 52 304 50 350 6.84e-34 127
Msa0728570 MtrunA17_Chr8g0345831 25.146 342 197 6 16 302 6 343 1.39e-33 125
Msa0728570 MtrunA17_Chr5g0420881 40.816 147 35 1 211 305 1 147 3.17e-33 119
Msa0728570 MtrunA17_Chr4g0045411 27.052 329 164 7 44 302 22 344 1.08e-31 120
Msa0728570 MtrunA17_Chr1g0179801 26.190 336 179 8 18 288 27 358 3.07e-31 120
Msa0728570 MtrunA17_Chr3g0114861 25.000 332 190 4 13 289 1 328 7.56e-31 118
Msa0728570 MtrunA17_Chr3g0126741 26.426 333 178 8 29 301 35 360 8.84e-30 116
Msa0728570 MtrunA17_Chr5g0420731 62.651 83 30 1 10 92 5 86 9.48e-30 108
Msa0728570 MtrunA17_Chr4g0050031 25.714 350 191 8 17 302 22 366 1.04e-29 115
Msa0728570 MtrunA17_Chr2g0314361 58.025 81 34 0 224 304 1 81 2.87e-29 107
Msa0728570 MtrunA17_Chr1g0187821 27.273 319 165 8 44 302 59 370 4.10e-29 114
Msa0728570 MtrunA17_Chr8g0336851 25.770 357 195 10 2 297 12 359 6.17e-29 114
Msa0728570 MtrunA17_Chr8g0336761 26.087 345 185 10 14 297 24 359 2.01e-28 112
Msa0728570 MtrunA17_Chr8g0336861 26.225 347 186 10 14 298 24 362 5.12e-28 111
Msa0728570 MtrunA17_Chr8g0336781 26.163 344 187 10 14 297 59 395 5.75e-28 111
Msa0728570 MtrunA17_Chr8g0348081 25.513 341 188 8 14 295 24 357 7.61e-28 110
Msa0728570 MtrunA17_Chr1g0187831 25.731 342 184 8 26 303 40 375 3.07e-27 109
Msa0728570 MtrunA17_Chr7g0250511 23.392 342 203 6 17 302 13 351 3.25e-27 108
Msa0728570 MtrunA17_Chr3g0125201 27.333 300 151 6 52 291 3 295 1.19e-26 106
Msa0728570 MtrunA17_Chr2g0311761 24.633 341 194 6 14 295 29 365 1.49e-26 107
Msa0728570 MtrunA17_Chr1g0162351 25.407 307 147 7 45 274 62 363 1.55e-26 107
Msa0728570 MtrunA17_Chr2g0332191 24.699 332 181 6 26 295 25 349 2.11e-26 107
Msa0728570 MtrunA17_Chr2g0311921 23.497 366 208 8 1 302 1 358 2.68e-26 106
Msa0728570 MtrunA17_Chr8g0336751 24.501 351 199 8 14 304 55 399 2.76e-26 107
Msa0728570 MtrunA17_Chr8g0354241 24.217 351 195 8 17 303 32 375 3.03e-26 106
Msa0728570 MtrunA17_Chr8g0336631 25.146 342 189 9 14 295 24 358 3.23e-26 106
Msa0728570 MtrunA17_Chr1g0162321 25.574 305 143 7 45 271 62 360 4.26e-26 106
Msa0728570 MtrunA17_Chr5g0424201 23.054 334 196 7 13 289 4 333 1.15e-25 104
Msa0728570 MtrunA17_Chr7g0265221 21.777 349 198 7 26 302 35 380 2.15e-25 104
Msa0728570 MtrunA17_Chr8g0354261 23.647 351 197 8 17 303 32 375 2.75e-25 103
Msa0728570 MtrunA17_Chr4g0045451 26.115 314 152 7 45 283 19 327 1.59e-24 101
Msa0728570 MtrunA17_Chr2g0289341 22.368 304 167 7 50 294 2 295 1.59e-24 100
Msa0728570 MtrunA17_Chr7g0266651 23.647 351 196 10 17 304 23 364 4.32e-24 100
Msa0728570 MtrunA17_Chr3g0145181 25.697 323 175 7 17 277 12 331 1.22e-23 99.0
Msa0728570 MtrunA17_Chr2g0285931 34.043 188 110 6 45 227 21 199 1.70e-23 98.6
Msa0728570 MtrunA17_Chr1g0187811 23.699 346 188 8 26 302 155 493 1.98e-23 100
Msa0728570 MtrunA17_Chr5g0424211 24.918 305 164 8 27 271 16 315 2.34e-23 98.2
Msa0728570 MtrunA17_Chr2g0311831 23.964 338 193 7 17 295 32 364 2.90e-23 98.2
Msa0728570 MtrunA17_Chr8g0371931 22.968 283 160 4 35 261 23 303 3.34e-23 98.2
Msa0728570 MtrunA17_Chr4g0066121 25.305 328 180 9 14 282 24 345 3.76e-23 97.8
Msa0728570 MtrunA17_Chr4g0045441 26.769 325 158 7 45 294 19 338 3.84e-23 97.8
Msa0728570 MtrunA17_Chr3g0121141 22.667 300 163 7 53 294 5 293 4.56e-23 97.1
Msa0728570 MtrunA17_Chr5g0439011 24.422 303 158 7 53 294 6 298 6.44e-23 96.7
Msa0728570 MtrunA17_Chr1g0162361 25.000 320 163 7 33 283 8 319 1.18e-22 96.3
Msa0728570 MtrunA17_Chr3g0102041 24.164 269 147 4 49 261 36 303 1.18e-22 96.3
Msa0728570 MtrunA17_Chr3g0093761 24.138 348 191 7 17 302 17 353 1.82e-22 95.9
Msa0728570 MtrunA17_Chr6g0472861 22.989 348 197 9 14 295 24 366 1.84e-22 96.3
Msa0728570 MtrunA17_Chr4g0045471 25.325 308 145 9 45 274 19 319 1.88e-22 95.9
Msa0728570 MtrunA17_Chr1g0204181 23.779 307 171 5 29 274 38 342 3.35e-22 95.5
Msa0728570 MtrunA17_Chr7g0220011 22.571 319 184 6 27 289 14 325 3.93e-22 94.7
Msa0728570 MtrunA17_Chr8g0371921 23.048 269 150 3 49 261 36 303 9.30e-22 94.0
Msa0728570 MtrunA17_Chr3g0093741 24.713 348 190 7 17 302 17 354 1.06e-21 93.6
Msa0728570 MtrunA17_Chr4g0045431 26.449 276 129 5 45 248 19 292 1.40e-21 93.2
Msa0728570 MtrunA17_Chr3g0145201 24.118 340 188 7 5 277 630 966 1.47e-21 95.1
Msa0728570 MtrunA17_Chr5g0405411 23.048 269 150 3 49 261 36 303 1.72e-21 93.2
Msa0728570 MtrunA17_Chr7g0265351 24.762 315 165 6 48 302 35 337 1.79e-21 92.8
Msa0728570 MtrunA17_Chr8g0351101 24.679 312 167 6 26 274 30 336 2.26e-21 93.2
Msa0728570 MtrunA17_Chr3g0093751 24.355 349 190 8 17 302 17 354 2.52e-21 92.8
Msa0728570 MtrunA17_Chr6g0474391 22.476 307 175 5 29 274 43 347 2.85e-21 92.8
Msa0728570 MtrunA17_Chr7g0235951 22.350 349 201 7 17 302 32 373 1.10e-20 91.3
Msa0728570 MtrunA17_Chr3g0130391 26.000 300 159 7 29 267 45 342 1.97e-20 90.5
Msa0728570 MtrunA17_Chr4g0055591 24.000 350 190 10 17 302 24 361 2.08e-20 90.1
Msa0728570 MtrunA17_Chr1g0191201 26.224 286 140 6 51 270 52 332 2.56e-20 90.1
Msa0728570 MtrunA17_Chr7g0225881 22.319 345 194 9 17 295 27 363 3.18e-20 89.7
Msa0728570 MtrunA17_Chr5g0412681 23.226 310 161 5 43 289 24 319 4.73e-20 89.0
Msa0728570 MtrunA17_Chr2g0311691 21.557 334 189 7 17 284 26 352 7.09e-20 89.0
Msa0728570 MtrunA17_Chr4g0066991 22.254 346 185 8 17 302 32 353 7.14e-20 88.6
Msa0728570 MtrunA17_Chr1g0184111 22.424 330 188 6 23 292 8 329 7.93e-20 88.2
Msa0728570 MtrunA17_Chr8g0335411 21.965 346 206 7 17 302 32 373 1.01e-19 88.6
Msa0728570 MtrunA17_Chr5g0412651 23.952 334 186 8 25 297 12 338 1.11e-19 87.8
Msa0728570 MtrunA17_Chr8g0336831 30.263 228 144 6 1 221 11 230 1.63e-19 85.9
Msa0728570 MtrunA17_Chr2g0311681 21.212 330 193 6 18 284 27 352 2.28e-19 87.4
Msa0728570 MtrunA17_Chr1g0167951 24.179 335 193 5 17 295 19 348 2.67e-19 87.0
Msa0728570 MtrunA17_Chr3g0125421 25.263 285 138 8 51 267 35 312 4.50e-19 86.3
Msa0728570 MtrunA17_Chr7g0220001 23.364 321 179 8 27 289 16 327 7.67e-19 85.5
Msa0728570 MtrunA17_Chr1g0184161 24.080 299 162 6 49 289 35 326 8.06e-19 85.5
Msa0728570 MtrunA17_Chr7g0236011 22.284 359 209 10 6 302 23 373 1.25e-18 85.1
Msa0728570 MtrunA17_Chr1g0167911 23.739 337 193 8 17 295 19 349 1.44e-18 85.1
Msa0728570 MtrunA17_Chr1g0167961 22.674 344 203 7 17 302 34 372 1.56e-18 85.1
Msa0728570 MtrunA17_Chr7g0247991 22.419 339 196 9 17 295 32 363 1.98e-18 84.7
Msa0728570 MtrunA17_Chr2g0311711 22.090 335 191 7 17 288 30 357 4.07e-18 84.0
Msa0728570 MtrunA17_Chr1g0161041 22.965 344 198 9 17 301 59 394 7.48e-18 83.2
Msa0728570 MtrunA17_Chr4g0045461 25.243 309 160 5 45 283 19 326 8.36e-18 82.8
Msa0728570 MtrunA17_Chr8g0364471 21.958 337 199 6 17 293 32 364 9.34e-18 82.8
Msa0728570 MtrunA17_Chr2g0311741 20.952 315 184 6 35 291 10 317 1.06e-17 82.0
Msa0728570 MtrunA17_Chr2g0311701 21.127 355 206 8 17 305 32 378 1.13e-17 82.4
Msa0728570 MtrunA17_Chr1g0170631 25.521 192 90 2 166 304 3 194 1.23e-17 79.7
Msa0728570 MtrunA17_Chr3g0114871 25.822 213 148 7 18 224 7 215 1.58e-17 80.9
Msa0728570 MtrunA17_Chr4g0011311 27.230 213 144 4 17 224 32 238 1.68e-17 81.3
Msa0728570 MtrunA17_Chr1g0184121 22.291 323 191 6 23 289 8 326 2.44e-17 81.3
Msa0728570 MtrunA17_Chr8g0384461 22.812 320 180 6 27 284 24 338 4.19e-17 80.9
Msa0728570 MtrunA17_Chr1g0184151 22.981 322 183 6 26 289 12 326 5.71e-17 80.1
Msa0728570 MtrunA17_Chr1g0148771 29.050 179 109 5 52 224 63 229 7.98e-17 80.1
Msa0728570 MtrunA17_Chr5g0412671 22.973 296 171 5 52 290 38 333 1.21e-16 79.3
Msa0728570 MtrunA17_Chr6g0455481 22.188 320 185 7 27 289 17 329 4.40e-16 77.8
Msa0728570 MtrunA17_Chr1g0184101 22.559 297 165 6 49 287 35 324 5.36e-16 77.4
Msa0728570 MtrunA17_Chr2g0313111 28.947 190 116 7 33 219 14 187 5.41e-16 77.4
Msa0728570 MtrunA17_Chr4g0052251 28.313 166 111 4 74 234 45 207 1.03e-15 76.6
Msa0728570 MtrunA17_Chr8g0358941 30.220 182 105 7 46 218 21 189 1.53e-15 75.9
Msa0728570 MtrunA17_Chr2g0311631 28.241 216 146 4 17 230 21 229 1.08e-14 73.9
Msa0728570 MtrunA17_Chr6g0488511 19.856 277 156 4 52 270 3 271 5.26e-14 71.2
Msa0728570 MtrunA17_Chr1g0184241 19.591 342 212 6 17 302 33 367 7.06e-13 68.6
Msa0728570 MtrunA17_Chr3g0105281 28.814 177 106 6 49 216 31 196 1.27e-12 67.4
Msa0728570 MtrunA17_Chr1g0158021 26.857 175 113 6 48 216 45 210 2.20e-12 65.9
Msa0728570 MtrunA17_Chr4g0075431 25.625 160 109 4 50 208 2 152 2.32e-12 64.3
Msa0728570 MtrunA17_Chr8g0375611 49.020 51 26 0 255 305 1 51 8.27e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0728570 AT1G17020.1 42.693 349 143 5 11 302 10 358 2.48e-96 288
Msa0728570 AT1G17010.1 42.614 352 145 5 11 305 10 361 1.81e-95 286
Msa0728570 AT4G25300.1 41.834 349 145 6 11 302 9 356 6.43e-92 277
Msa0728570 AT4G25310.1 40.805 348 147 5 11 302 9 353 3.86e-87 265
Msa0728570 AT1G78550.1 38.329 347 159 4 11 302 10 356 1.23e-84 259
Msa0728570 AT4G25310.2 42.188 320 154 6 11 302 9 325 1.97e-81 249
Msa0728570 AT1G78550.2 37.956 274 118 1 81 302 5 278 9.74e-66 207
Msa0728570 AT3G21420.1 33.333 351 173 4 15 304 14 364 1.32e-63 205
Msa0728570 AT2G38240.1 30.792 341 177 4 17 300 11 349 1.83e-58 191
Msa0728570 AT3G55970.1 29.395 347 182 5 18 301 14 360 7.84e-49 167
Msa0728570 AT5G05600.1 26.254 339 192 4 18 298 27 365 3.63e-45 157
Msa0728570 AT3G11180.1 28.863 343 178 6 18 298 56 394 1.12e-44 157
Msa0728570 AT3G11180.2 29.781 319 158 6 18 274 56 370 6.07e-43 152
Msa0728570 AT5G20400.1 28.788 330 174 6 17 286 8 336 4.10e-41 146
Msa0728570 AT5G20550.1 28.701 331 175 7 17 287 8 337 8.65e-40 142
Msa0728570 AT1G49390.1 28.037 321 168 7 17 277 8 325 1.13e-38 139
Msa0728570 AT4G22880.1 27.374 358 190 7 13 304 2 355 8.50e-38 137
Msa0728570 AT4G22880.2 27.374 358 190 7 13 304 2 355 8.50e-38 137
Msa0728570 AT4G22880.3 27.374 358 190 7 13 304 2 355 8.50e-38 137
Msa0728570 AT3G55970.2 34.842 221 132 5 18 228 14 232 1.60e-37 135
Msa0728570 AT5G05600.2 31.429 210 138 3 18 221 27 236 5.20e-37 134
Msa0728570 AT5G54000.2 26.727 333 178 7 17 286 8 337 7.66e-37 135
Msa0728570 AT4G10490.1 25.826 333 187 6 26 301 15 344 1.61e-34 129
Msa0728570 AT5G24530.1 26.398 322 177 5 27 292 13 330 1.75e-34 128
Msa0728570 AT2G44800.1 27.405 343 187 8 17 301 15 353 3.00e-33 125
Msa0728570 AT4G10500.1 24.924 329 188 6 29 301 20 345 6.86e-33 124
Msa0728570 AT2G36690.2 26.286 350 190 8 18 304 21 365 1.18e-32 124
Msa0728570 AT2G36690.1 26.286 350 190 8 18 304 21 365 1.18e-32 124
Msa0728570 AT3G60290.1 28.367 349 182 10 17 304 15 356 3.06e-32 122
Msa0728570 AT4G16330.2 26.623 308 161 6 49 300 64 362 4.71e-32 122
Msa0728570 AT3G13610.1 26.437 348 182 10 17 302 26 361 1.71e-31 120
Msa0728570 AT1G55290.1 25.882 340 187 6 17 298 25 357 5.29e-31 119
Msa0728570 AT4G25300.2 34.031 191 73 2 165 302 72 262 9.24e-31 116
Msa0728570 AT5G59540.1 27.479 353 185 11 14 302 21 366 1.36e-30 118
Msa0728570 AT1G49390.2 26.829 246 127 2 85 277 1 246 9.65e-30 114
Msa0728570 AT5G08640.2 25.392 319 175 7 29 291 19 330 1.16e-28 112
Msa0728570 AT5G08640.1 25.392 319 175 7 29 291 19 330 1.16e-28 112
Msa0728570 AT5G63590.1 28.520 277 138 6 47 267 9 281 7.57e-28 110
Msa0728570 AT5G54000.1 24.903 257 138 3 85 286 1 257 3.97e-27 107
Msa0728570 AT3G19000.1 27.922 308 146 6 47 283 27 329 4.12e-27 108
Msa0728570 AT3G12900.1 24.419 344 196 8 17 303 21 357 1.15e-26 107
Msa0728570 AT5G43440.1 25.070 355 191 7 14 302 20 365 3.10e-26 107
Msa0728570 AT3G19010.1 25.688 327 158 7 50 304 26 339 5.17e-25 103
Msa0728570 AT3G19010.4 25.688 327 158 7 50 304 26 339 5.17e-25 103
Msa0728570 AT3G19000.2 31.683 202 115 5 47 230 27 223 1.18e-24 100
Msa0728570 AT1G06620.1 24.507 355 190 8 14 302 23 365 1.91e-24 102
Msa0728570 AT5G59530.1 24.581 358 188 8 14 302 20 364 2.00e-24 102
Msa0728570 AT1G05010.1 24.183 306 163 8 50 294 2 299 1.01e-23 99.4
Msa0728570 AT1G12010.1 24.834 302 157 7 51 294 6 295 1.05e-23 99.0
Msa0728570 AT2G30830.1 25.740 338 186 8 17 295 20 351 1.08e-23 99.8
Msa0728570 AT3G51240.1 21.379 290 173 2 27 261 13 302 1.63e-23 99.4
Msa0728570 AT1G06650.2 24.432 352 189 9 14 297 22 364 4.87e-23 98.2
Msa0728570 AT1G04380.1 25.163 306 169 5 52 302 45 345 1.63e-22 96.3
Msa0728570 AT4G25420.1 24.727 275 147 3 52 266 61 335 2.72e-22 96.3
Msa0728570 AT1G04350.1 24.207 347 191 10 14 297 18 355 4.35e-22 95.1
Msa0728570 AT1G77330.1 25.083 303 153 7 52 291 3 294 7.27e-22 94.0
Msa0728570 AT4G16330.1 26.407 231 113 3 123 300 30 256 8.30e-22 92.8
Msa0728570 AT1G06640.1 24.507 355 185 11 14 297 22 364 1.10e-21 94.4
Msa0728570 AT5G43450.1 23.380 355 205 7 4 297 9 357 1.58e-21 93.6
Msa0728570 AT1G15550.1 22.356 331 186 7 26 292 27 350 1.80e-21 93.6
Msa0728570 AT4G25420.2 29.189 185 122 2 52 227 61 245 2.55e-21 92.0
Msa0728570 AT3G19010.2 28.079 203 120 4 50 233 26 221 2.69e-21 92.0
Msa0728570 AT1G62380.1 22.924 301 164 8 51 294 6 295 3.47e-21 92.0
Msa0728570 AT5G07200.1 24.919 309 168 6 20 266 28 334 4.10e-21 92.8
Msa0728570 AT2G19590.1 24.013 304 154 8 51 295 10 295 4.17e-21 91.7
Msa0728570 AT1G06645.1 25.000 352 184 12 14 297 35 374 1.24e-20 91.3
Msa0728570 AT1G80340.1 24.837 306 157 8 28 271 26 320 4.06e-20 89.7
Msa0728570 AT5G59540.2 32.159 227 135 10 14 230 21 238 4.41e-20 88.6
Msa0728570 AT5G63600.1 24.762 315 163 10 44 299 23 322 1.24e-19 87.8
Msa0728570 AT5G63600.2 24.684 316 163 10 44 299 23 323 2.03e-19 87.4
Msa0728570 AT5G63580.2 31.217 189 119 6 38 221 5 187 4.06e-19 85.1
Msa0728570 AT5G63580.1 31.122 196 122 7 38 228 5 192 4.56e-19 85.1
Msa0728570 AT1G60980.1 25.267 281 142 5 51 265 56 334 1.13e-18 85.9
Msa0728570 AT3G19010.3 24.595 309 154 8 50 304 26 309 2.26e-18 84.3
Msa0728570 AT3G61400.1 22.992 361 195 10 14 303 21 369 2.34e-18 84.7
Msa0728570 AT5G51810.1 23.934 305 156 7 27 266 40 333 2.87e-18 84.7
Msa0728570 AT1G06650.1 27.602 221 138 5 14 221 22 233 7.20e-18 82.8
Msa0728570 AT1G06640.3 29.018 224 131 8 14 221 22 233 1.04e-17 82.0
Msa0728570 AT1G06620.2 27.511 229 140 7 14 230 23 237 1.41e-17 81.6
Msa0728570 AT5G43440.2 28.326 233 144 6 14 234 20 241 2.05e-17 81.3
Msa0728570 AT1G06640.2 29.018 224 131 8 14 221 22 233 2.32e-17 81.6
Msa0728570 AT1G03410.2 23.779 307 163 9 49 291 52 351 2.40e-17 82.0
Msa0728570 AT1G03410.1 24.104 307 162 9 49 291 89 388 3.06e-17 82.0
Msa0728570 AT5G51810.2 27.907 215 130 6 27 227 40 243 4.91e-17 80.1
Msa0728570 AT1G78440.1 29.670 182 110 7 52 227 18 187 1.21e-16 79.3
Msa0728570 AT1G44090.1 25.879 313 159 9 21 269 37 340 1.22e-16 80.1
Msa0728570 AT5G43935.1 23.944 284 149 8 49 282 16 282 4.75e-16 77.4
Msa0728570 AT1G03400.1 22.714 339 186 9 17 293 19 343 5.76e-16 77.8
Msa0728570 AT2G30840.1 22.515 342 196 8 17 295 20 355 8.03e-16 77.4
Msa0728570 AT5G07480.1 27.835 194 109 5 48 224 40 219 1.93e-15 76.3
Msa0728570 AT2G25450.1 22.899 345 202 7 17 302 20 359 7.33e-15 74.7
Msa0728570 AT3G61400.2 26.106 226 143 6 14 224 21 237 1.14e-14 73.6
Msa0728570 AT5G43450.2 26.471 238 160 6 4 234 9 238 1.50e-14 73.2
Msa0728570 AT1G80330.1 21.477 298 168 6 50 287 47 338 1.58e-14 73.6
Msa0728570 AT1G04380.2 28.736 174 118 3 52 224 45 213 7.98e-14 70.9
Msa0728570 AT2G34555.1 30.000 170 103 6 52 215 27 186 2.90e-13 69.7
Msa0728570 AT1G30040.2 25.714 175 116 5 46 215 25 190 3.57e-13 68.9
Msa0728570 AT5G63595.1 27.778 180 103 6 48 224 21 176 5.44e-13 68.6
Msa0728570 AT1G30040.1 25.714 175 116 5 46 215 25 190 7.82e-13 68.6
Msa0728570 AT1G03400.2 26.027 219 139 7 17 228 19 221 1.06e-12 68.6
Msa0728570 AT4G21690.1 25.000 204 134 5 29 224 29 221 1.09e-12 68.2
Msa0728570 AT5G12270.1 20.833 336 201 6 26 302 30 359 1.23e-11 65.1

Find 59 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGACGATCGTTGAGTTTA+TGG 0.164144 5_1:+33338310 Msa0728570:CDS
TTGAACACTGCAGGGCTTTC+AGG 0.166389 5_1:-33339020 None:intergenic
CAAGTATTCCCCAACCATTC+AGG 0.301424 5_1:+33338150 Msa0728570:CDS
GGAATACTTGGAAACAAGTT+TGG 0.302805 5_1:-33338137 None:intergenic
CAAAGAATGGGGTTTCTTCC+AGG 0.312719 5_1:+33336399 Msa0728570:CDS
TCTGACGGTGCCTTCTGTTC+AGG 0.335911 5_1:+33336207 Msa0728570:CDS
CTGAATGGTTGGGGAATACT+TGG 0.360937 5_1:-33338149 None:intergenic
AATATAACGTTCTGGAACTT+TGG 0.364555 5_1:-33336251 None:intergenic
AAGAAATCTAGCAACTCATT+TGG 0.367512 5_1:-33338353 None:intergenic
GCTAGACTGAATGCAATTCT+TGG 0.372792 5_1:+33338975 Msa0728570:CDS
TTGAGTCCAATGACTTGTTC+TGG 0.389849 5_1:-33338428 None:intergenic
ATCGTTGAGTTTATGGCAAA+AGG 0.398124 5_1:+33338317 Msa0728570:CDS
CAGAAGAACACAAACTTGAA+TGG 0.417798 5_1:+33338069 Msa0728570:CDS
CGATCATGCATGCAAAGAAT+GGG 0.419677 5_1:+33336387 Msa0728570:CDS
AACTTATTCAAATCGATGAT+TGG 0.420121 5_1:-33336328 None:intergenic
AATCTAGCAACTCATTTGGT+TGG 0.424098 5_1:-33338349 None:intergenic
TCAGACATGGTGAAGAATCT+TGG 0.430798 5_1:+33336178 Msa0728570:CDS
TATTTCTCACGCAAGCTTGA+AGG 0.436191 5_1:+33339074 Msa0728570:CDS
TTTGGATTTCTTATATATGT+TGG 0.444271 5_1:-33338119 None:intergenic
TCGATCATGCATGCAAAGAA+TGG 0.447725 5_1:+33336386 Msa0728570:CDS
CTTTCAGGAGTAACAAGGCT+TGG 0.474827 5_1:-33339005 None:intergenic
CCTGGTGATATGGAGGGGTT+TGG 0.474899 5_1:+33338029 Msa0728570:CDS
AGTAATTCATCCTCATTGCT+TGG 0.476820 5_1:-33338388 None:intergenic
AGAAGAACACAAACTTGAAT+GGG 0.481222 5_1:+33338070 Msa0728570:CDS
CCAACTTTATTGAACACTGC+AGG 0.485987 5_1:-33339029 None:intergenic
TAGATACAACTAGAGGGTCT+TGG 0.489914 5_1:-33336282 None:intergenic
GGAGTAACAAGGCTTGGTGC+TGG 0.492537 5_1:-33338999 None:intergenic
ACTTGTTCTGGTTGAGGACA+TGG 0.507834 5_1:-33338416 None:intergenic
CCAATGACTTGTTCTGGTTG+AGG 0.508065 5_1:-33338422 None:intergenic
TCACGGAGTCGATCTATCAT+TGG 0.511176 5_1:+33337932 Msa0728570:CDS
ACGTTCTGGAACTTTGGTGA+TGG 0.515981 5_1:-33336245 None:intergenic
TGTCTTGAGGATGGAAAACA+AGG 0.541078 5_1:+33339112 Msa0728570:CDS
CGTTCTGGAACTTTGGTGAT+GGG 0.543906 5_1:-33336244 None:intergenic
CCTGCAGTGTTCAATAAAGT+TGG 0.546978 5_1:+33339029 Msa0728570:CDS
TTGCTAGATTTCTTTGAAGA+GGG 0.548174 5_1:+33338362 Msa0728570:CDS
AGCACTGTTAAATGTGGCAA+TGG 0.550490 5_1:-33338955 None:intergenic
CAACTTTATTGAACACTGCA+GGG 0.551137 5_1:-33339028 None:intergenic
GTTGCTAGATTTCTTTGAAG+AGG 0.558294 5_1:+33338361 Msa0728570:CDS
CCAAACCCCTCCATATCACC+AGG 0.568599 5_1:-33338029 None:intergenic
ACACATTGATGTCTTGAGGA+TGG 0.573486 5_1:+33339103 Msa0728570:CDS
CAGGGCTTTCAGGAGTAACA+AGG 0.577977 5_1:-33339010 None:intergenic
TATTTCCAGCTGATCAATCA+CGG 0.578873 5_1:+33337915 Msa0728570:intron
AATCACACATTGATGTCTTG+AGG 0.584321 5_1:+33339099 Msa0728570:CDS
TTTACTAGCTCCTGAACAGA+AGG 0.585140 5_1:-33336217 None:intergenic
CAGTCTAGCACTGTTAAATG+TGG 0.610371 5_1:-33338961 None:intergenic
GAATCTTGGAACCTCTCTGA+CGG 0.630102 5_1:+33336192 Msa0728570:CDS
AAGTTGTTATCTGAAGAAGA+TGG 0.630763 5_1:+33336346 Msa0728570:CDS
GTTTGACAGATAATGACGAA+TGG 0.632619 5_1:+33338876 Msa0728570:intron
AGAGTTCTTCAATCTATCTG+CGG 0.636691 5_1:+33337980 Msa0728570:CDS
ATTGTGCTAGATACAACTAG+AGG 0.639653 5_1:-33336289 None:intergenic
TTGTGCTAGATACAACTAGA+GGG 0.647002 5_1:-33336288 None:intergenic
GTTCTTCAATCTATCTGCGG+AGG 0.647422 5_1:+33337983 Msa0728570:CDS
AGTGTTCAATAAAGTTGGAG+TGG 0.652929 5_1:+33339034 Msa0728570:CDS
GATCATGCATGCAAAGAATG+GGG 0.659038 5_1:+33336388 Msa0728570:CDS
GCAAGCTATGGATTCAGACA+TGG 0.664545 5_1:+33336165 None:intergenic
AAGAGGGAAGCCAAGCAATG+AGG 0.669106 5_1:+33338378 Msa0728570:CDS
AACAGAAGGCACCGTCAGAG+AGG 0.678848 5_1:-33336203 None:intergenic
TGTTCTGGTTGAGGACATGG+AGG 0.710542 5_1:-33338413 None:intergenic
GTCTTGAGGATGGAAAACAA+GGG 0.754653 5_1:+33339113 Msa0728570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAATAATTCTTTTTTAA+TGG - chr5_1:33336811-33336830 None:intergenic 10.0%
!! AGATTTACAAATAATATTTA+AGG - chr5_1:33336895-33336914 None:intergenic 10.0%
!!! TTTATCTTTAAAAATGTTTA+CGG - chr5_1:33337046-33337065 None:intergenic 10.0%
!!! TATTATATTATGTTTTAAGT+TGG + chr5_1:33337144-33337163 Msa0728570:intron 10.0%
!! GTGAAATTAAAATACAATAA+TGG - chr5_1:33336441-33336460 None:intergenic 15.0%
!! ACATTCAAAATAAAATACAT+GGG - chr5_1:33336590-33336609 None:intergenic 15.0%
!! AAGATGAAAAAAATGAAATT+TGG - chr5_1:33336760-33336779 None:intergenic 15.0%
!!! GTAAACATTTTTAAAGATAA+AGG + chr5_1:33337045-33337064 Msa0728570:intron 15.0%
!!! TGTTTATTTTAAGTTTAAGT+TGG - chr5_1:33337521-33337540 None:intergenic 15.0%
!!! GGTATTTTAACTTAATTTAA+AGG - chr5_1:33337568-33337587 None:intergenic 15.0%
!!! TTTAGAGTTATATTCATTTA+AGG - chr5_1:33338731-33338750 None:intergenic 15.0%
!!! ATTAACAAATTTTCTTTTTC+AGG + chr5_1:33338758-33338777 Msa0728570:intron 15.0%
!!! TTCATTTAACTTGTTTTCTT+TGG - chr5_1:33336557-33336576 None:intergenic 20.0%
!! GACATTCAAAATAAAATACA+TGG - chr5_1:33336591-33336610 None:intergenic 20.0%
!!! GTTTTAAATACTAACAATAC+TGG + chr5_1:33336733-33336752 Msa0728570:intron 20.0%
!! ATTTCTTCAATAATTCATCA+AGG + chr5_1:33336824-33336843 Msa0728570:intron 20.0%
!! ATTATAATGATTGTTTAGTG+AGG + chr5_1:33336862-33336881 Msa0728570:intron 20.0%
!! TTATAATGATTGTTTAGTGA+GGG + chr5_1:33336863-33336882 Msa0728570:intron 20.0%
!!! TTTATTCTTTGGAAGAAAAT+TGG - chr5_1:33337010-33337029 None:intergenic 20.0%
!! TTCTTCCAAAGAATAAAATT+TGG + chr5_1:33337013-33337032 Msa0728570:intron 20.0%
!!! TTGATCCAAATTTTATTCTT+TGG - chr5_1:33337021-33337040 None:intergenic 20.0%
!!! TAAGTTTAGAACTTTAAATC+AGG + chr5_1:33337097-33337116 Msa0728570:intron 20.0%
!!! TTTTTTGACAAACAATTTAG+AGG - chr5_1:33337370-33337389 None:intergenic 20.0%
!!! AATATTTGAAATTGCAATTG+TGG - chr5_1:33337589-33337608 None:intergenic 20.0%
!!! TCCATCTTTTTATTTTTTGA+GGG + chr5_1:33337674-33337693 Msa0728570:intron 20.0%
!!! ACAAGTCTATCTTAATTTTT+AGG + chr5_1:33337702-33337721 Msa0728570:intron 20.0%
!! TAGAGATATGATATGATATA+CGG - chr5_1:33337831-33337850 None:intergenic 20.0%
!! TTTGGATTTCTTATATATGT+TGG - chr5_1:33338122-33338141 None:intergenic 20.0%
!!! AATTAAACTCGGTTTTAAAT+CGG - chr5_1:33338599-33338618 None:intergenic 20.0%
!! ATATGCATGAAAATTAAACT+CGG - chr5_1:33338610-33338629 None:intergenic 20.0%
! AACTTATTCAAATCGATGAT+TGG - chr5_1:33336331-33336350 None:intergenic 25.0%
! TTTGTCAAGATAGTTCTTTA+TGG + chr5_1:33336711-33336730 Msa0728570:intron 25.0%
!!! GTCCATCTTTTTATTTTTTG+AGG + chr5_1:33337673-33337692 Msa0728570:intron 25.0%
!!! CCATCTTTTTATTTTTTGAG+GGG + chr5_1:33337675-33337694 Msa0728570:intron 25.0%
! AACGACATAATGTTACAATT+TGG + chr5_1:33337854-33337873 Msa0728570:intron 25.0%
! ACGACATAATGTTACAATTT+GGG + chr5_1:33337855-33337874 Msa0728570:intron 25.0%
! GCTGGAAATAATATGATATA+TGG - chr5_1:33337905-33337924 None:intergenic 25.0%
! AAAAAAAAACCTGAATGGTT+GGG - chr5_1:33338162-33338181 None:intergenic 25.0%
! AAAAAAAAAACCTGAATGGT+TGG - chr5_1:33338163-33338182 None:intergenic 25.0%
! AAGGAAAAAAAAAACCTGAA+TGG - chr5_1:33338167-33338186 None:intergenic 25.0%
! ATATAACACATATAGAAGGA+AGG - chr5_1:33338186-33338205 None:intergenic 25.0%
! TTGCATATAACACATATAGA+AGG - chr5_1:33338190-33338209 None:intergenic 25.0%
!! AATATAACGTTCTGGAACTT+TGG - chr5_1:33336254-33336273 None:intergenic 30.0%
! TTTTGCTGAATATAACGTTC+TGG - chr5_1:33336262-33336281 None:intergenic 30.0%
AAGTTGTTATCTGAAGAAGA+TGG + chr5_1:33336346-33336365 Msa0728570:CDS 30.0%
TTGATTCAAAATGTCACTCA+TGG + chr5_1:33337221-33337240 Msa0728570:intron 30.0%
TCCCTTTCATCACATAATAT+TGG + chr5_1:33337257-33337276 Msa0728570:intron 30.0%
CCCAATATTATGTGATGAAA+GGG - chr5_1:33337261-33337280 None:intergenic 30.0%
CCCTTTCATCACATAATATT+GGG + chr5_1:33337258-33337277 Msa0728570:intron 30.0%
ACCCAATATTATGTGATGAA+AGG - chr5_1:33337262-33337281 None:intergenic 30.0%
GACAAACAATTTAGAGGTTT+GGG - chr5_1:33337364-33337383 None:intergenic 30.0%
TGACAAACAATTTAGAGGTT+TGG - chr5_1:33337365-33337384 None:intergenic 30.0%
GTACAAAACATTACTCACAT+CGG - chr5_1:33337441-33337460 None:intergenic 30.0%
! AAGATGGACTCATACAAATA+TGG - chr5_1:33337662-33337681 None:intergenic 30.0%
CCCCTCAAAAAATAAAAAGA+TGG - chr5_1:33337678-33337697 None:intergenic 30.0%
GATTATATGGATAAAGCTAG+TGG - chr5_1:33337750-33337769 None:intergenic 30.0%
!!! GCTAACTTTTTGGGATTATA+TGG - chr5_1:33337763-33337782 None:intergenic 30.0%
! ATTTCAGTGGCTAACTTTTT+GGG - chr5_1:33337772-33337791 None:intergenic 30.0%
! TATTTCAGTGGCTAACTTTT+TGG - chr5_1:33337773-33337792 None:intergenic 30.0%
!!! CATGTTTTTGGTTATTTCAG+TGG - chr5_1:33337785-33337804 None:intergenic 30.0%
TGATATACGGTAAAACATTG+TGG - chr5_1:33337818-33337837 None:intergenic 30.0%
!!! AAATTTTTTGGGCAAAAACC+TGG + chr5_1:33338011-33338030 Msa0728570:CDS 30.0%
AGAAGAACACAAACTTGAAT+GGG + chr5_1:33338070-33338089 Msa0728570:CDS 30.0%
AAAAAAAACCTGAATGGTTG+GGG - chr5_1:33338161-33338180 None:intergenic 30.0%
CTCTAGATTATCTCTGTAAT+GGG - chr5_1:33338261-33338280 None:intergenic 30.0%
TCTCTAGATTATCTCTGTAA+TGG - chr5_1:33338262-33338281 None:intergenic 30.0%
AAGAAATCTAGCAACTCATT+TGG - chr5_1:33338356-33338375 None:intergenic 30.0%
! TTGCTAGATTTCTTTGAAGA+GGG + chr5_1:33338362-33338381 Msa0728570:CDS 30.0%
AAGTAAGAAAAGATGGAATG+TGG + chr5_1:33338513-33338532 Msa0728570:intron 30.0%
! AATGCTTTTGTGATCAACAT+TGG + chr5_1:33338557-33338576 Msa0728570:intron 30.0%
! TATATGTGCGACTTTAGAAA+TGG + chr5_1:33338644-33338663 Msa0728570:intron 30.0%
GTTGATCAATCATATAAGTC+CGG - chr5_1:33338699-33338718 None:intergenic 30.0%
TTGTGCTAGATACAACTAGA+GGG - chr5_1:33336291-33336310 None:intergenic 35.0%
ATTGTGCTAGATACAACTAG+AGG - chr5_1:33336292-33336311 None:intergenic 35.0%
! AGTTAGTATTTTCTGCCACT+TGG - chr5_1:33337414-33337433 None:intergenic 35.0%
TACGGTAAAACATTGTGGTT+GGG - chr5_1:33337813-33337832 None:intergenic 35.0%
ATACGGTAAAACATTGTGGT+TGG - chr5_1:33337814-33337833 None:intergenic 35.0%
TATTTCCAGCTGATCAATCA+CGG + chr5_1:33337915-33337934 Msa0728570:intron 35.0%
AGAGTTCTTCAATCTATCTG+CGG + chr5_1:33337980-33337999 Msa0728570:CDS 35.0%
!!! CGGAGGAGAAGAAATTTTTT+GGG + chr5_1:33338000-33338019 Msa0728570:CDS 35.0%
CAGAAGAACACAAACTTGAA+TGG + chr5_1:33338069-33338088 Msa0728570:CDS 35.0%
GGAATACTTGGAAACAAGTT+TGG - chr5_1:33338140-33338159 None:intergenic 35.0%
ATCGTTGAGTTTATGGCAAA+AGG + chr5_1:33338317-33338336 Msa0728570:CDS 35.0%
AATCTAGCAACTCATTTGGT+TGG - chr5_1:33338352-33338371 None:intergenic 35.0%
! GTTGCTAGATTTCTTTGAAG+AGG + chr5_1:33338361-33338380 Msa0728570:CDS 35.0%
AGTAATTCATCCTCATTGCT+TGG - chr5_1:33338391-33338410 None:intergenic 35.0%
!! TTCATTGAGTTGGAGAAGAA+TGG - chr5_1:33338480-33338499 None:intergenic 35.0%
CTCCAACTCAATGAAATTGA+AGG + chr5_1:33338485-33338504 Msa0728570:intron 35.0%
! TTCCATCTTTTCTTACTTGC+AGG - chr5_1:33338511-33338530 None:intergenic 35.0%
!! ATCACAAAAGCATTTGAGAG+TGG - chr5_1:33338551-33338570 None:intergenic 35.0%
AGTGAAACGTTTCTAATGAC+CGG + chr5_1:33338677-33338696 Msa0728570:intron 35.0%
GTTTGACAGATAATGACGAA+TGG + chr5_1:33338876-33338895 Msa0728570:intron 35.0%
CAATTAACGCAGAAAAAGAG+AGG + chr5_1:33338928-33338947 Msa0728570:CDS 35.0%
CAACTTTATTGAACACTGCA+GGG - chr5_1:33339031-33339050 None:intergenic 35.0%
AGTGTTCAATAAAGTTGGAG+TGG + chr5_1:33339034-33339053 Msa0728570:CDS 35.0%
AATCACACATTGATGTCTTG+AGG + chr5_1:33339099-33339118 Msa0728570:CDS 35.0%
TCAGACATGGTGAAGAATCT+TGG + chr5_1:33336178-33336197 Msa0728570:CDS 40.0%
TTTACTAGCTCCTGAACAGA+AGG - chr5_1:33336220-33336239 None:intergenic 40.0%
TAGATACAACTAGAGGGTCT+TGG - chr5_1:33336285-33336304 None:intergenic 40.0%
TCGATCATGCATGCAAAGAA+TGG + chr5_1:33336386-33336405 Msa0728570:CDS 40.0%
CGATCATGCATGCAAAGAAT+GGG + chr5_1:33336387-33336406 Msa0728570:CDS 40.0%
GATCATGCATGCAAAGAATG+GGG + chr5_1:33336388-33336407 Msa0728570:CDS 40.0%
! GGAAAAGTGTGATTCAAACC+TGG - chr5_1:33336420-33336439 None:intergenic 40.0%
! TGGGTTGAGAATATGGATGT+TGG - chr5_1:33337345-33337364 None:intergenic 40.0%
!! AGAGGTTTGGGTTGAGAATA+TGG - chr5_1:33337352-33337371 None:intergenic 40.0%
!! TAGTATTTTCTGCCACTTGG+CGG - chr5_1:33337411-33337430 None:intergenic 40.0%
! GGTTGGGTGTATCATGTTTT+TGG - chr5_1:33337797-33337816 None:intergenic 40.0%
!!! GCGGAGGAGAAGAAATTTTT+TGG + chr5_1:33337999-33338018 Msa0728570:CDS 40.0%
CAAAAACCTGGTGATATGGA+GGG + chr5_1:33338023-33338042 Msa0728570:CDS 40.0%
AAAAACCTGGTGATATGGAG+GGG + chr5_1:33338024-33338043 Msa0728570:CDS 40.0%
TGTGACGATCGTTGAGTTTA+TGG + chr5_1:33338310-33338329 Msa0728570:CDS 40.0%
!! TTGAGTCCAATGACTTGTTC+TGG - chr5_1:33338431-33338450 None:intergenic 40.0%
CTCAATCCTCATTCTGATGT+TGG + chr5_1:33338446-33338465 Msa0728570:intron 40.0%
GGCCTTCAATTTCATTGAGT+TGG - chr5_1:33338490-33338509 None:intergenic 40.0%
GCATTTGAGAGTGGCTTAAT+AGG - chr5_1:33338542-33338561 None:intergenic 40.0%
AGCACTGTTAAATGTGGCAA+TGG - chr5_1:33338958-33338977 None:intergenic 40.0%
CAGTCTAGCACTGTTAAATG+TGG - chr5_1:33338964-33338983 None:intergenic 40.0%
GCTAGACTGAATGCAATTCT+TGG + chr5_1:33338975-33338994 Msa0728570:CDS 40.0%
CCAACTTTATTGAACACTGC+AGG - chr5_1:33339032-33339051 None:intergenic 40.0%
CCTGCAGTGTTCAATAAAGT+TGG + chr5_1:33339029-33339048 Msa0728570:CDS 40.0%
TATTTCTCACGCAAGCTTGA+AGG + chr5_1:33339074-33339093 Msa0728570:CDS 40.0%
ACACATTGATGTCTTGAGGA+TGG + chr5_1:33339103-33339122 Msa0728570:CDS 40.0%
TGTCTTGAGGATGGAAAACA+AGG + chr5_1:33339112-33339131 Msa0728570:CDS 40.0%
GTCTTGAGGATGGAAAACAA+GGG + chr5_1:33339113-33339132 Msa0728570:CDS 40.0%
GAATCTTGGAACCTCTCTGA+CGG + chr5_1:33336192-33336211 Msa0728570:CDS 45.0%
!! CGTTCTGGAACTTTGGTGAT+GGG - chr5_1:33336247-33336266 None:intergenic 45.0%
!! ACGTTCTGGAACTTTGGTGA+TGG - chr5_1:33336248-33336267 None:intergenic 45.0%
CAAAGAATGGGGTTTCTTCC+AGG + chr5_1:33336399-33336418 Msa0728570:CDS 45.0%
TCACGGAGTCGATCTATCAT+TGG + chr5_1:33337932-33337951 Msa0728570:CDS 45.0%
GTTCTTCAATCTATCTGCGG+AGG + chr5_1:33337983-33338002 Msa0728570:CDS 45.0%
TGGGCAAAAACCTGGTGATA+TGG + chr5_1:33338019-33338038 Msa0728570:CDS 45.0%
GCAAAAACCTGGTGATATGG+AGG + chr5_1:33338022-33338041 Msa0728570:CDS 45.0%
CTGAATGGTTGGGGAATACT+TGG - chr5_1:33338152-33338171 None:intergenic 45.0%
CAAGTATTCCCCAACCATTC+AGG + chr5_1:33338150-33338169 Msa0728570:CDS 45.0%
! ACTTGTTCTGGTTGAGGACA+TGG - chr5_1:33338419-33338438 None:intergenic 45.0%
!! CCAATGACTTGTTCTGGTTG+AGG - chr5_1:33338425-33338444 None:intergenic 45.0%
CCTCAACCAGAACAAGTCAT+TGG + chr5_1:33338422-33338441 Msa0728570:intron 45.0%
! AGAGCACCAACATCAGAATG+AGG - chr5_1:33338455-33338474 None:intergenic 45.0%
GGCCTGCAAGTAAGAAAAGA+TGG + chr5_1:33338506-33338525 Msa0728570:intron 45.0%
CAACATTGGAGACATGCTAG+AGG + chr5_1:33338571-33338590 Msa0728570:intron 45.0%
CTTTCAGGAGTAACAAGGCT+TGG - chr5_1:33339008-33339027 None:intergenic 45.0%
!!! ATTTTACTTATATTTTTATT+TGG - chr5_1:33336525-33336544 None:intergenic 5.0%
!! TAAAACTTTAAATTAATTTA+AGG - chr5_1:33336674-33336693 None:intergenic 5.0%
CACTTGGCGGTTTAGAGGTT+TGG - chr5_1:33337398-33337417 None:intergenic 50.0%
CAAACCTCTAAACCGCCAAG+TGG + chr5_1:33337396-33337415 Msa0728570:intron 50.0%
AAGAGGGAAGCCAAGCAATG+AGG + chr5_1:33338378-33338397 Msa0728570:CDS 50.0%
! TGTTCTGGTTGAGGACATGG+AGG - chr5_1:33338416-33338435 None:intergenic 50.0%
CAGGGCTTTCAGGAGTAACA+AGG - chr5_1:33339013-33339032 None:intergenic 50.0%
TTGAACACTGCAGGGCTTTC+AGG - chr5_1:33339023-33339042 None:intergenic 50.0%
!! AACAGAAGGCACCGTCAGAG+AGG - chr5_1:33336206-33336225 None:intergenic 55.0%
TCTGACGGTGCCTTCTGTTC+AGG + chr5_1:33336207-33336226 Msa0728570:CDS 55.0%
! TCTGCCACTTGGCGGTTTAG+AGG - chr5_1:33337403-33337422 None:intergenic 55.0%
CGACTCCGTGATTGATCAGC+TGG - chr5_1:33337923-33337942 None:intergenic 55.0%
CCAAACCCCTCCATATCACC+AGG - chr5_1:33338032-33338051 None:intergenic 55.0%
CCTGGTGATATGGAGGGGTT+TGG + chr5_1:33338029-33338048 Msa0728570:CDS 55.0%
!! GGAGTAACAAGGCTTGGTGC+TGG - chr5_1:33339002-33339021 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 33336172 33339139 33336172 ID=Msa0728570;Name=Msa0728570
chr5_1 mRNA 33336172 33339139 33336172 ID=Msa0728570-mRNA-1;Parent=Msa0728570;Name=Msa0728570-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|4|0|306
chr5_1 exon 33336172 33336420 33336172 ID=Msa0728570-mRNA-1:exon:10686;Parent=Msa0728570-mRNA-1
chr5_1 exon 33337924 33338171 33337924 ID=Msa0728570-mRNA-1:exon:10687;Parent=Msa0728570-mRNA-1
chr5_1 exon 33338268 33338436 33338268 ID=Msa0728570-mRNA-1:exon:10688;Parent=Msa0728570-mRNA-1
chr5_1 exon 33338885 33339139 33338885 ID=Msa0728570-mRNA-1:exon:10689;Parent=Msa0728570-mRNA-1
chr5_1 CDS 33336172 33336420 33336172 ID=Msa0728570-mRNA-1:cds;Parent=Msa0728570-mRNA-1
chr5_1 CDS 33337924 33338171 33337924 ID=Msa0728570-mRNA-1:cds;Parent=Msa0728570-mRNA-1
chr5_1 CDS 33338268 33338436 33338268 ID=Msa0728570-mRNA-1:cds;Parent=Msa0728570-mRNA-1
chr5_1 CDS 33338885 33339139 33338885 ID=Msa0728570-mRNA-1:cds;Parent=Msa0728570-mRNA-1
Gene Sequence

>Msa0728570

ATGGATTCAGACATGGTGAAGAATCTTGGAACCTCTCTGACGGTGCCTTCTGTTCAGGAGCTAGTAAAGCAACCCATCACCAAAGTTCCAGAACGTTATATTCAGCAAAACCAAGACCCTCTAGTTGTATCTAGCACAATCTCTTCACAACAAGTACCAATCATCGATTTGAATAAGTTGTTATCTGAAGAAGATGGAACTGAACTACAAAAATTCGATCATGCATGCAAAGAATGGGGTTTCTTCCAGCTGATCAATCACGGAGTCGATCTATCATTGGTTGAAAATTTCAAAAAACATGTTCAAGAGTTCTTCAATCTATCTGCGGAGGAGAAGAAATTTTTTGGGCAAAAACCTGGTGATATGGAGGGGTTTGGTCAGATGTTTGTTGTATCAGAAGAACACAAACTTGAATGGGCAGATTTATTCTACATTGTCACTCTTCCAACATATATAAGAAATCCAAACTTGTTTCCAAGTATTCCCCAACCATTCAGAGATAATCTAGAGATGTATTCTATAGAGATGAAAAAATTGTGTGTGACGATCGTTGAGTTTATGGCAAAAGGATTAAAGATCCAACCAAATGAGTTGCTAGATTTCTTTGAAGAGGGAAGCCAAGCAATGAGGATGAATTACTATCCTCCATGTCCTCAACCAGAACAAATAATGACGAATGGTATTTATCGAAGTATTGAACATCGAGCAACAATTAACGCAGAAAAAGAGAGGATTTCCATTGCCACATTTAACAGTGCTAGACTGAATGCAATTCTTGGTCCAGCACCAAGCCTTGTTACTCCTGAAAGCCCTGCAGTGTTCAATAAAGTTGGAGTGGAAGATTTCTTTAAAGCATATTTCTCACGCAAGCTTGAAGGAAAATCACACATTGATGTCTTGAGGATGGAAAACAAGGGATAA

Protein sequence

>Msa0728570

MDSDMVKNLGTSLTVPSVQELVKQPITKVPERYIQQNQDPLVVSSTISSQQVPIIDLNKLLSEEDGTELQKFDHACKEWGFFQLINHGVDLSLVENFKKHVQEFFNLSAEEKKFFGQKPGDMEGFGQMFVVSEEHKLEWADLFYIVTLPTYIRNPNLFPSIPQPFRDNLEMYSIEMKKLCVTIVEFMAKGLKIQPNELLDFFEEGSQAMRMNYYPPCPQPEQIMTNGIYRSIEHRATINAEKERISIATFNSARLNAILGPAPSLVTPESPAVFNKVGVEDFFKAYFSRKLEGKSHIDVLRMENKG*