Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0985360 | A0A6A2YVP4 | 49.727 | 183 | 36 | 7 | 6 | 140 | 170 | 344 | 2.10e-11 | 71.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0107830 | Msa0985360 | 0.816021 | 6.852620e-52 | -8.615850e-47 |
| Msa0614960 | Msa0985360 | 0.807427 | 5.081403e-50 | -8.615850e-47 |
| Msa0655370 | Msa0985360 | 0.811592 | 6.481560e-51 | -8.615850e-47 |
| Msa0699170 | Msa0985360 | 0.829806 | 4.189021e-55 | -8.615850e-47 |
| Msa0716620 | Msa0985360 | 0.817729 | 2.835728e-52 | -8.615850e-47 |
| Msa0728230 | Msa0985360 | 0.820983 | 5.140926e-53 | -8.615850e-47 |
| Msa0728570 | Msa0985360 | 0.830456 | 2.907271e-55 | -8.615850e-47 |
| Msa0744710 | Msa0985360 | 0.801500 | 8.742466e-49 | -8.615850e-47 |
| Msa0750790 | Msa0985360 | 0.815526 | 8.835794e-52 | -8.615850e-47 |
| Msa0750830 | Msa0985360 | 0.813022 | 3.158162e-51 | -8.615850e-47 |
| Msa0771810 | Msa0985360 | 0.807918 | 3.996008e-50 | -8.615850e-47 |
| Msa0772350 | Msa0985360 | 0.823482 | 1.352384e-53 | -8.615850e-47 |
| Msa0799120 | Msa0985360 | 0.800174 | 1.631070e-48 | -8.615850e-47 |
| Msa0826240 | Msa0985360 | 0.804016 | 2.643968e-49 | -8.615850e-47 |
| Msa0129290 | Msa0985360 | 0.820486 | 6.687537e-53 | -8.615850e-47 |
| Msa0186240 | Msa0985360 | 0.813477 | 2.509324e-51 | -8.615850e-47 |
| Msa0390200 | Msa0985360 | 0.810966 | 8.862787e-51 | -8.615850e-47 |
| Msa0433090 | Msa0985360 | 0.809509 | 1.826577e-50 | -8.615850e-47 |
| Msa0464310 | Msa0985360 | 0.806380 | 8.461338e-50 | -8.615850e-47 |
| Msa0985320 | Msa0985360 | 0.960841 | 5.147131e-119 | -8.615850e-47 |
| Msa0985360 | Msa1035050 | 0.804845 | 1.776810e-49 | -8.615850e-47 |
| Msa0985360 | Msa1061840 | 0.809577 | 1.766757e-50 | -8.615850e-47 |
| Msa0985360 | Msa1075090 | 0.807492 | 4.923504e-50 | -8.615850e-47 |
| Msa0985360 | Msa1119670 | 0.804109 | 2.528752e-49 | -8.615850e-47 |
| Msa0985360 | Msa1151070 | 0.804948 | 1.690847e-49 | -8.615850e-47 |
| Msa0985360 | Msa1162430 | 0.809617 | 1.731905e-50 | -8.615850e-47 |
| Msa0985360 | Msa1319760 | 0.806404 | 8.360851e-50 | -8.615850e-47 |
| Msa0985360 | Msa1349420 | 0.801319 | 9.522394e-49 | -8.615850e-47 |
| Msa0985360 | Msa1437590 | 0.803888 | 2.811590e-49 | -8.615850e-47 |
| Msa0242720 | Msa0985360 | 0.801019 | 1.096710e-48 | -8.615850e-47 |
| Msa0522170 | Msa0985360 | 0.805238 | 1.470349e-49 | -8.615850e-47 |
| Msa0524710 | Msa0985360 | 0.804130 | 2.503488e-49 | -8.615850e-47 |
| Msa0561830 | Msa0985360 | 0.800459 | 1.426921e-48 | -8.615850e-47 |
| Msa0874750 | Msa0985360 | 0.808433 | 3.104303e-50 | -8.615850e-47 |
| Msa0883570 | Msa0985360 | 0.843313 | 1.513075e-58 | -8.615850e-47 |
| Msa0910610 | Msa0985360 | 0.836584 | 8.588175e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATATTTGTAGGGCTTCTT+TGG | 0.254191 | 6_4:+31779310 | None:intergenic |
| GGATACTTGTATGGCTTCTT+AGG | 0.255496 | 6_4:+31779115 | None:intergenic |
| GGATACTTATAAGGTTTCTT+TGG | 0.305468 | 6_4:+31779457 | Msa0985370:intron |
| TGGTGACTTGTAATAGTAAT+AGG | 0.322769 | 6_4:+31779228 | None:intergenic |
| GGTGGTGAAGGATACTTATA+AGG | 0.323970 | 6_4:+31779448 | Msa0985370:intron |
| GGCTTCTTTGGTGGCGGTGG+CGG | 0.349513 | 6_4:+31779322 | None:intergenic |
| GGAGACTTGTACTTATATAT+TGG | 0.354256 | 6_4:+31779346 | None:intergenic |
| TTCTTTGGTGGCGGTGGCGG+AGG | 0.367644 | 6_4:+31779325 | None:intergenic |
| CTTTATTTGCAACTGTTCTT+CGG | 0.382892 | 6_4:+31778074 | None:intergenic |
| GTTCGACGCGGTGGTGGTGG+TGG | 0.408034 | 6_4:+31779253 | None:intergenic |
| TAGGGCTTCTTTGGTGGCGG+TGG | 0.414656 | 6_4:+31779319 | None:intergenic |
| GAACACCCTACTACTATTAC+AGG | 0.418643 | 6_4:-31779192 | Msa0985360:CDS |
| TAGGGTGTTCGGCGTGGTGG+TGG | 0.420964 | 6_4:+31779205 | None:intergenic |
| GGTGTTCGGCGTGGTGGTGG+TGG | 0.425247 | 6_4:+31779208 | None:intergenic |
| GGTGTTCGACGCGGTGGTGG+TGG | 0.425362 | 6_4:+31779250 | None:intergenic |
| GGCTTCCTATGTGGTGGTGG+TGG | 0.431209 | 6_4:+31779166 | None:intergenic |
| TGGAGGTGATGGATATTTGT+AGG | 0.433356 | 6_4:+31779300 | None:intergenic |
| TGGAGGAAATTGGTACTTGT+AGG | 0.433488 | 6_4:+31779144 | None:intergenic |
| TGGAGGTGATGAGTATTTGT+AGG | 0.455879 | 6_4:+31779372 | None:intergenic |
| AACTTTGGTGGAGGTGGTGA+AGG | 0.456550 | 6_4:+31779436 | Msa0985370:intron |
| TAGGTGGTGGTGGAGGAAAT+TGG | 0.457085 | 6_4:+31779134 | None:intergenic |
| TATGGCTTCTTAGGTGGTGG+TGG | 0.463859 | 6_4:+31779124 | None:intergenic |
| TAAGGTTTCTTTGGTGGTGA+TGG | 0.464174 | 6_4:+31779466 | Msa0985370:intron |
| GGAGGTGATGGATATTTGTA+GGG | 0.465112 | 6_4:+31779301 | None:intergenic |
| TGGTGACCTGTAATAGTAGT+AGG | 0.470208 | 6_4:+31779186 | None:intergenic |
| TACTTGTAGACTGGTGGTGG+TGG | 0.475386 | 6_4:+31779088 | None:intergenic |
| TACTTATAAGGTTTCTTTGG+TGG | 0.482329 | 6_4:+31779460 | Msa0985370:intron |
| TAGGGTGTTCGACGCGGTGG+TGG | 0.482891 | 6_4:+31779247 | None:intergenic |
| GAGTAATGGTAAGGAAACTT+TGG | 0.487085 | 6_4:+31779421 | Msa0985370:intron |
| TAAGGAAACTTTGGTGGAGG+TGG | 0.490542 | 6_4:+31779430 | Msa0985370:intron |
| TATTTGTAGGGCTTCTTTGG+TGG | 0.493683 | 6_4:+31779313 | None:intergenic |
| GGCTTCTTAGGTGGTGGTGG+AGG | 0.495363 | 6_4:+31779127 | None:intergenic |
| GGTGACTTGTAATAGTAATA+GGG | 0.497501 | 6_4:+31779229 | None:intergenic |
| TACTTATATATTGGTGGTGG+AGG | 0.497685 | 6_4:+31779355 | None:intergenic |
| TAGGGCTTCCTATGTGGTGG+TGG | 0.509045 | 6_4:+31779163 | None:intergenic |
| GGAGGAAATTGGTACTTGTA+GGG | 0.509991 | 6_4:+31779145 | None:intergenic |
| GGAGGTGATGAGTATTTGTA+GGG | 0.512210 | 6_4:+31779373 | None:intergenic |
| TGTAATAGTAGTAGGGTGTT+CGG | 0.516719 | 6_4:+31779194 | None:intergenic |
| TAGACTGGTGGTGGTGGAGA+TGG | 0.518812 | 6_4:+31779094 | None:intergenic |
| TAAACTGGTGGTGGAGGTGA+TGG | 0.525705 | 6_4:+31779289 | None:intergenic |
| GGTGGAGATGGATACTTGTA+TGG | 0.527804 | 6_4:+31779106 | None:intergenic |
| TACTTGTAAACTGGTGGTGG+AGG | 0.534343 | 6_4:+31779283 | None:intergenic |
| TTGTAGGGCTTCTTTGGTGG+CGG | 0.534445 | 6_4:+31779316 | None:intergenic |
| TTGTATGGCTTCTTAGGTGG+TGG | 0.542024 | 6_4:+31779121 | None:intergenic |
| AGTGGATATGAGTAATGGTA+AGG | 0.544711 | 6_4:+31779412 | Msa0985370:intron |
| GACTTGTACTTATATATTGG+TGG | 0.550999 | 6_4:+31779349 | None:intergenic |
| TACTTGTAGGGCTTCCTATG+TGG | 0.554747 | 6_4:+31779157 | None:intergenic |
| TTGTACTTGTAAACTGGTGG+TGG | 0.559303 | 6_4:+31779280 | None:intergenic |
| TAATGGTAAGGAAACTTTGG+TGG | 0.559376 | 6_4:+31779424 | Msa0985370:intron |
| TGGTAAGGAAACTTTGGTGG+AGG | 0.559692 | 6_4:+31779427 | Msa0985370:intron |
| TACTTGTATGGCTTCTTAGG+TGG | 0.560678 | 6_4:+31779118 | None:intergenic |
| TTGTACTTATATATTGGTGG+TGG | 0.566101 | 6_4:+31779352 | None:intergenic |
| TAATAGGGTGTTCGACGCGG+TGG | 0.568319 | 6_4:+31779244 | None:intergenic |
| AATAAAGTAAACATGATCGA+TGG | 0.572127 | 6_4:-31778058 | Msa0985360:CDS |
| AAACATGATCGATGGATCGA+TGG | 0.579013 | 6_4:-31778050 | Msa0985360:CDS |
| TTGTACTTGTAGACTGGTGG+TGG | 0.584798 | 6_4:+31779085 | None:intergenic |
| GGTGACTTGTACTTGTAGAC+TGG | 0.589345 | 6_4:+31779079 | None:intergenic |
| GTGGGAGTGGATATGAGTAA+TGG | 0.610863 | 6_4:+31779407 | Msa0985370:intron |
| TAGTAGGGTGTTCGGCGTGG+TGG | 0.610992 | 6_4:+31779202 | None:intergenic |
| GACTTGTACTTGTAGACTGG+TGG | 0.615760 | 6_4:+31779082 | None:intergenic |
| TTGTAGGGCTTCCTATGTGG+TGG | 0.626539 | 6_4:+31779160 | None:intergenic |
| GGTGACCTGTAATAGTAGTA+GGG | 0.628359 | 6_4:+31779187 | None:intergenic |
| TAGTAGTAGGGTGTTCGGCG+TGG | 0.637477 | 6_4:+31779199 | None:intergenic |
| TAGTAATAGGGTGTTCGACG+CGG | 0.647720 | 6_4:+31779241 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATATATATATATATA+TGG | + | chr6_4:31778770-31778789 | None:intergenic | 0.0% |
| !! | AAATAATATATATATATATA+TGG | + | chr6_4:31778770-31778789 | None:intergenic | 0.0% |
| !! | TTTGACAAAACTTATATATA+TGG | - | chr6_4:31778561-31778580 | Msa0985360:intron | 15.0% |
| !! | TTGACAAAACTTATATATAT+GGG | - | chr6_4:31778562-31778581 | Msa0985360:intron | 15.0% |
| !! | ATCATAATTCATTTCATTAT+TGG | - | chr6_4:31778890-31778909 | Msa0985360:intron | 15.0% |
| !! | TTTAAAAATAAAATTGAGCA+AGG | - | chr6_4:31779214-31779233 | Msa0985360:CDS | 15.0% |
| !! | TTTGACAAAACTTATATATA+TGG | - | chr6_4:31778561-31778580 | Msa0985360:intron | 15.0% |
| !! | TTGACAAAACTTATATATAT+GGG | - | chr6_4:31778562-31778581 | Msa0985360:intron | 15.0% |
| !! | ATCATAATTCATTTCATTAT+TGG | - | chr6_4:31778890-31778909 | Msa0985360:intron | 15.0% |
| !! | TTTAAAAATAAAATTGAGCA+AGG | - | chr6_4:31779214-31779233 | Msa0985360:CDS | 15.0% |
| !! | GCAAAATTATAACTAAAAAG+TGG | - | chr6_4:31778684-31778703 | Msa0985360:intron | 20.0% |
| !! | ATTATTATCATGATCATCAT+CGG | - | chr6_4:31778924-31778943 | Msa0985360:intron | 20.0% |
| !! | AATTAAATATTAACCTACGA+CGG | + | chr6_4:31779129-31779148 | None:intergenic | 20.0% |
| !! | ATAAATGGTGAATAAATACT+TGG | - | chr6_4:31779383-31779402 | Msa0985360:CDS | 20.0% |
| !! | TAAATGGTGAATAAATACTT+GGG | - | chr6_4:31779384-31779403 | Msa0985360:CDS | 20.0% |
| !! | CACACATATATATTATTAGT+TGG | + | chr6_4:31779422-31779441 | Msa0985370:intron | 20.0% |
| !! | GCAAAATTATAACTAAAAAG+TGG | - | chr6_4:31778684-31778703 | Msa0985360:intron | 20.0% |
| !! | ATTATTATCATGATCATCAT+CGG | - | chr6_4:31778924-31778943 | Msa0985360:intron | 20.0% |
| !! | AATTAAATATTAACCTACGA+CGG | + | chr6_4:31779129-31779148 | None:intergenic | 20.0% |
| !! | ATAAATGGTGAATAAATACT+TGG | - | chr6_4:31779383-31779402 | Msa0985360:CDS | 20.0% |
| !! | TAAATGGTGAATAAATACTT+GGG | - | chr6_4:31779384-31779403 | Msa0985360:CDS | 20.0% |
| !! | CACACATATATATTATTAGT+TGG | + | chr6_4:31779422-31779441 | Msa0985370:intron | 20.0% |
| ! | TAACTATTTAGTAGTGGTAA+GGG | + | chr6_4:31778486-31778505 | None:intergenic | 25.0% |
| ! | TACTACTAACTATTTAGTAG+TGG | + | chr6_4:31778492-31778511 | None:intergenic | 25.0% |
| ! | AAACATACCATATGTACTAA+GGG | + | chr6_4:31778518-31778537 | None:intergenic | 25.0% |
| ! | CTAAAAAACACCTTCATAAA+AGG | + | chr6_4:31778603-31778622 | None:intergenic | 25.0% |
| !! | ACACCAACTAATTTTTATGA+AGG | - | chr6_4:31778652-31778671 | Msa0985360:intron | 25.0% |
| ! | ACACCTTCATAAAAATTAGT+TGG | + | chr6_4:31778658-31778677 | None:intergenic | 25.0% |
| ! | TCAATCTTCACAACTATTAT+AGG | - | chr6_4:31778802-31778821 | Msa0985360:intron | 25.0% |
| ! | CAATCTTCACAACTATTATA+GGG | - | chr6_4:31778803-31778822 | Msa0985360:intron | 25.0% |
| !! | TTATAGGGTTCTAATCAATA+TGG | - | chr6_4:31778818-31778837 | Msa0985360:intron | 25.0% |
| !!! | CTCACACAAGTTTTTAATTA+TGG | - | chr6_4:31778846-31778865 | Msa0985360:intron | 25.0% |
| !!! | TTTTTAATTATGGACCATTG+AGG | - | chr6_4:31778856-31778875 | Msa0985360:intron | 25.0% |
| ! | ATTATTAGTTGGTCATAAAC+TGG | + | chr6_4:31779411-31779430 | Msa0985370:intron | 25.0% |
| ! | AATAAAGTAAACATGATCGA+TGG | - | chr6_4:31779475-31779494 | Msa0985360:CDS | 25.0% |
| ! | TAACTATTTAGTAGTGGTAA+GGG | + | chr6_4:31778486-31778505 | None:intergenic | 25.0% |
| ! | TACTACTAACTATTTAGTAG+TGG | + | chr6_4:31778492-31778511 | None:intergenic | 25.0% |
| ! | AAACATACCATATGTACTAA+GGG | + | chr6_4:31778518-31778537 | None:intergenic | 25.0% |
| ! | CTAAAAAACACCTTCATAAA+AGG | + | chr6_4:31778603-31778622 | None:intergenic | 25.0% |
| !! | ACACCAACTAATTTTTATGA+AGG | - | chr6_4:31778652-31778671 | Msa0985360:intron | 25.0% |
| ! | ACACCTTCATAAAAATTAGT+TGG | + | chr6_4:31778658-31778677 | None:intergenic | 25.0% |
| ! | TCAATCTTCACAACTATTAT+AGG | - | chr6_4:31778802-31778821 | Msa0985360:intron | 25.0% |
| ! | CAATCTTCACAACTATTATA+GGG | - | chr6_4:31778803-31778822 | Msa0985360:intron | 25.0% |
| !! | TTATAGGGTTCTAATCAATA+TGG | - | chr6_4:31778818-31778837 | Msa0985360:intron | 25.0% |
| !!! | CTCACACAAGTTTTTAATTA+TGG | - | chr6_4:31778846-31778865 | Msa0985360:intron | 25.0% |
| !!! | TTTTTAATTATGGACCATTG+AGG | - | chr6_4:31778856-31778875 | Msa0985360:intron | 25.0% |
| ! | ATTATTAGTTGGTCATAAAC+TGG | + | chr6_4:31779411-31779430 | Msa0985370:intron | 25.0% |
| ! | AATAAAGTAAACATGATCGA+TGG | - | chr6_4:31779475-31779494 | Msa0985360:CDS | 25.0% |
| TACTTATAAGGTTTCTTTGG+TGG | + | chr6_4:31778076-31778095 | None:intergenic | 30.0% | |
| GGATACTTATAAGGTTTCTT+TGG | + | chr6_4:31778079-31778098 | None:intergenic | 30.0% | |
| !!! | TATTTGTAGGGTTTTTTAGG+AGG | + | chr6_4:31778151-31778170 | None:intergenic | 30.0% |
| !!! | GAGTATTTGTAGGGTTTTTT+AGG | + | chr6_4:31778154-31778173 | None:intergenic | 30.0% |
| TTGTACTTATATATTGGTGG+TGG | + | chr6_4:31778184-31778203 | None:intergenic | 30.0% | |
| GACTTGTACTTATATATTGG+TGG | + | chr6_4:31778187-31778206 | None:intergenic | 30.0% | |
| GGAGACTTGTACTTATATAT+TGG | + | chr6_4:31778190-31778209 | None:intergenic | 30.0% | |
| ! | GGTGACTTGTAATAGTAATA+GGG | + | chr6_4:31778307-31778326 | None:intergenic | 30.0% |
| ! | TGGTGACTTGTAATAGTAAT+AGG | + | chr6_4:31778308-31778327 | None:intergenic | 30.0% |
| AACTATTTAGTAGTGGTAAG+GGG | + | chr6_4:31778485-31778504 | None:intergenic | 30.0% | |
| CTAACTATTTAGTAGTGGTA+AGG | + | chr6_4:31778487-31778506 | None:intergenic | 30.0% | |
| AGTATATCCCTTAGTACATA+TGG | - | chr6_4:31778508-31778527 | Msa0985360:intron | 30.0% | |
| GAAACATACCATATGTACTA+AGG | + | chr6_4:31778519-31778538 | None:intergenic | 30.0% | |
| ATTGCTAAAAGACACATTCA+TGG | - | chr6_4:31778728-31778747 | Msa0985360:intron | 30.0% | |
| TTGCTAAAAGACACATTCAT+GGG | - | chr6_4:31778729-31778748 | Msa0985360:intron | 30.0% | |
| GATATAACCTTTAACCTCAA+TGG | + | chr6_4:31778873-31778892 | None:intergenic | 30.0% | |
| !! | TTTTAAAAAATAGCCGTCGT+AGG | - | chr6_4:31779113-31779132 | Msa0985360:CDS | 30.0% |
| TGACAGTCTAGACAAATAAA+TGG | - | chr6_4:31779368-31779387 | Msa0985360:CDS | 30.0% | |
| ! | CTTTATTTGCAACTGTTCTT+CGG | + | chr6_4:31779462-31779481 | Msa0985370:intron | 30.0% |
| TACTTATAAGGTTTCTTTGG+TGG | + | chr6_4:31778076-31778095 | None:intergenic | 30.0% | |
| GGATACTTATAAGGTTTCTT+TGG | + | chr6_4:31778079-31778098 | None:intergenic | 30.0% | |
| !!! | TATTTGTAGGGTTTTTTAGG+AGG | + | chr6_4:31778151-31778170 | None:intergenic | 30.0% |
| !!! | GAGTATTTGTAGGGTTTTTT+AGG | + | chr6_4:31778154-31778173 | None:intergenic | 30.0% |
| TTGTACTTATATATTGGTGG+TGG | + | chr6_4:31778184-31778203 | None:intergenic | 30.0% | |
| GACTTGTACTTATATATTGG+TGG | + | chr6_4:31778187-31778206 | None:intergenic | 30.0% | |
| GGAGACTTGTACTTATATAT+TGG | + | chr6_4:31778190-31778209 | None:intergenic | 30.0% | |
| ! | GGTGACTTGTAATAGTAATA+GGG | + | chr6_4:31778307-31778326 | None:intergenic | 30.0% |
| ! | TGGTGACTTGTAATAGTAAT+AGG | + | chr6_4:31778308-31778327 | None:intergenic | 30.0% |
| AACTATTTAGTAGTGGTAAG+GGG | + | chr6_4:31778485-31778504 | None:intergenic | 30.0% | |
| CTAACTATTTAGTAGTGGTA+AGG | + | chr6_4:31778487-31778506 | None:intergenic | 30.0% | |
| AGTATATCCCTTAGTACATA+TGG | - | chr6_4:31778508-31778527 | Msa0985360:intron | 30.0% | |
| GAAACATACCATATGTACTA+AGG | + | chr6_4:31778519-31778538 | None:intergenic | 30.0% | |
| ATTGCTAAAAGACACATTCA+TGG | - | chr6_4:31778728-31778747 | Msa0985360:intron | 30.0% | |
| TTGCTAAAAGACACATTCAT+GGG | - | chr6_4:31778729-31778748 | Msa0985360:intron | 30.0% | |
| GATATAACCTTTAACCTCAA+TGG | + | chr6_4:31778873-31778892 | None:intergenic | 30.0% | |
| !! | TTTTAAAAAATAGCCGTCGT+AGG | - | chr6_4:31779113-31779132 | Msa0985360:CDS | 30.0% |
| TGACAGTCTAGACAAATAAA+TGG | - | chr6_4:31779368-31779387 | Msa0985360:CDS | 30.0% | |
| ! | CTTTATTTGCAACTGTTCTT+CGG | + | chr6_4:31779462-31779481 | Msa0985370:intron | 30.0% |
| TAATGGTAAGGAAACTTTGG+TGG | + | chr6_4:31778112-31778131 | None:intergenic | 35.0% | |
| GAGTAATGGTAAGGAAACTT+TGG | + | chr6_4:31778115-31778134 | None:intergenic | 35.0% | |
| AGTGGATATGAGTAATGGTA+AGG | + | chr6_4:31778124-31778143 | None:intergenic | 35.0% | |
| !! | TACTTATATATTGGTGGTGG+AGG | + | chr6_4:31778181-31778200 | None:intergenic | 35.0% |
| GATTTGTACTTGTAAACTGG+TGG | + | chr6_4:31778259-31778278 | None:intergenic | 35.0% | |
| GGAGATTTGTACTTGTAAAC+TGG | + | chr6_4:31778262-31778281 | None:intergenic | 35.0% | |
| ! | TGTAATAGTAGTAGGGTGTT+CGG | + | chr6_4:31778342-31778361 | None:intergenic | 35.0% |
| ACTATTTAGTAGTGGTAAGG+GGG | + | chr6_4:31778484-31778503 | None:intergenic | 35.0% | |
| ! | CTAGAAGACACCTTTTATGA+AGG | - | chr6_4:31778590-31778609 | Msa0985360:intron | 35.0% |
| TTATGGACCATTGAGGTTAA+AGG | - | chr6_4:31778863-31778882 | Msa0985360:intron | 35.0% | |
| ! | TATGTGTGCACACTTTTCTT+AGG | - | chr6_4:31779434-31779453 | Msa0985360:CDS | 35.0% |
| TAATGGTAAGGAAACTTTGG+TGG | + | chr6_4:31778112-31778131 | None:intergenic | 35.0% | |
| GAGTAATGGTAAGGAAACTT+TGG | + | chr6_4:31778115-31778134 | None:intergenic | 35.0% | |
| AGTGGATATGAGTAATGGTA+AGG | + | chr6_4:31778124-31778143 | None:intergenic | 35.0% | |
| !! | TACTTATATATTGGTGGTGG+AGG | + | chr6_4:31778181-31778200 | None:intergenic | 35.0% |
| GATTTGTACTTGTAAACTGG+TGG | + | chr6_4:31778259-31778278 | None:intergenic | 35.0% | |
| GGAGATTTGTACTTGTAAAC+TGG | + | chr6_4:31778262-31778281 | None:intergenic | 35.0% | |
| ! | TGTAATAGTAGTAGGGTGTT+CGG | + | chr6_4:31778342-31778361 | None:intergenic | 35.0% |
| ACTATTTAGTAGTGGTAAGG+GGG | + | chr6_4:31778484-31778503 | None:intergenic | 35.0% | |
| ! | CTAGAAGACACCTTTTATGA+AGG | - | chr6_4:31778590-31778609 | Msa0985360:intron | 35.0% |
| TTATGGACCATTGAGGTTAA+AGG | - | chr6_4:31778863-31778882 | Msa0985360:intron | 35.0% | |
| ! | TATGTGTGCACACTTTTCTT+AGG | - | chr6_4:31779434-31779453 | Msa0985360:CDS | 35.0% |
| !! | TAAGGTTTCTTTGGTGGTGA+TGG | + | chr6_4:31778070-31778089 | None:intergenic | 40.0% |
| GGTGGTGAAGGATACTTATA+AGG | + | chr6_4:31778088-31778107 | None:intergenic | 40.0% | |
| !!! | TGTAGGGTTTTTTAGGAGGT+GGG | + | chr6_4:31778147-31778166 | None:intergenic | 40.0% |
| !!! | TTGTAGGGTTTTTTAGGAGG+TGG | + | chr6_4:31778148-31778167 | None:intergenic | 40.0% |
| GGAGGTGATGAGTATTTGTA+GGG | + | chr6_4:31778163-31778182 | None:intergenic | 40.0% | |
| TGGAGGTGATGAGTATTTGT+AGG | + | chr6_4:31778164-31778183 | None:intergenic | 40.0% | |
| TATTTGTAGGGCTTCTTTGG+TGG | + | chr6_4:31778223-31778242 | None:intergenic | 40.0% | |
| GGATATTTGTAGGGCTTCTT+TGG | + | chr6_4:31778226-31778245 | None:intergenic | 40.0% | |
| !! | GGAGGTGATGGATATTTGTA+GGG | + | chr6_4:31778235-31778254 | None:intergenic | 40.0% |
| !! | TGGAGGTGATGGATATTTGT+AGG | + | chr6_4:31778236-31778255 | None:intergenic | 40.0% |
| TTGTACTTGTAAACTGGTGG+TGG | + | chr6_4:31778256-31778275 | None:intergenic | 40.0% | |
| GAACACCCTACTACTATTAC+AGG | - | chr6_4:31778341-31778360 | Msa0985360:intron | 40.0% | |
| GGTGACCTGTAATAGTAGTA+GGG | + | chr6_4:31778349-31778368 | None:intergenic | 40.0% | |
| TGGTGACCTGTAATAGTAGT+AGG | + | chr6_4:31778350-31778369 | None:intergenic | 40.0% | |
| GGAGGAAATTGGTACTTGTA+GGG | + | chr6_4:31778391-31778410 | None:intergenic | 40.0% | |
| TGGAGGAAATTGGTACTTGT+AGG | + | chr6_4:31778392-31778411 | None:intergenic | 40.0% | |
| TACTTGTATGGCTTCTTAGG+TGG | + | chr6_4:31778418-31778437 | None:intergenic | 40.0% | |
| GGATACTTGTATGGCTTCTT+AGG | + | chr6_4:31778421-31778440 | None:intergenic | 40.0% | |
| AAAGTGGAAATCACACCTTG+AGG | - | chr6_4:31778700-31778719 | Msa0985360:intron | 40.0% | |
| ! | TTTTAGCAATCCACACCTCA+AGG | + | chr6_4:31778718-31778737 | None:intergenic | 40.0% |
| AAAGTCAAGCTTTCACTACC+AGG | - | chr6_4:31779252-31779271 | Msa0985360:CDS | 40.0% | |
| ! | TTGTCTAAGATATGTCAGCC+TGG | + | chr6_4:31779273-31779292 | None:intergenic | 40.0% |
| AAACATGATCGATGGATCGA+TGG | - | chr6_4:31779483-31779502 | Msa0985360:CDS | 40.0% | |
| !! | TAAGGTTTCTTTGGTGGTGA+TGG | + | chr6_4:31778070-31778089 | None:intergenic | 40.0% |
| GGTGGTGAAGGATACTTATA+AGG | + | chr6_4:31778088-31778107 | None:intergenic | 40.0% | |
| !!! | TGTAGGGTTTTTTAGGAGGT+GGG | + | chr6_4:31778147-31778166 | None:intergenic | 40.0% |
| !!! | TTGTAGGGTTTTTTAGGAGG+TGG | + | chr6_4:31778148-31778167 | None:intergenic | 40.0% |
| GGAGGTGATGAGTATTTGTA+GGG | + | chr6_4:31778163-31778182 | None:intergenic | 40.0% | |
| TGGAGGTGATGAGTATTTGT+AGG | + | chr6_4:31778164-31778183 | None:intergenic | 40.0% | |
| TATTTGTAGGGCTTCTTTGG+TGG | + | chr6_4:31778223-31778242 | None:intergenic | 40.0% | |
| GGATATTTGTAGGGCTTCTT+TGG | + | chr6_4:31778226-31778245 | None:intergenic | 40.0% | |
| !! | GGAGGTGATGGATATTTGTA+GGG | + | chr6_4:31778235-31778254 | None:intergenic | 40.0% |
| !! | TGGAGGTGATGGATATTTGT+AGG | + | chr6_4:31778236-31778255 | None:intergenic | 40.0% |
| TTGTACTTGTAAACTGGTGG+TGG | + | chr6_4:31778256-31778275 | None:intergenic | 40.0% | |
| GAACACCCTACTACTATTAC+AGG | - | chr6_4:31778341-31778360 | Msa0985360:intron | 40.0% | |
| GGTGACCTGTAATAGTAGTA+GGG | + | chr6_4:31778349-31778368 | None:intergenic | 40.0% | |
| TGGTGACCTGTAATAGTAGT+AGG | + | chr6_4:31778350-31778369 | None:intergenic | 40.0% | |
| GGAGGAAATTGGTACTTGTA+GGG | + | chr6_4:31778391-31778410 | None:intergenic | 40.0% | |
| TGGAGGAAATTGGTACTTGT+AGG | + | chr6_4:31778392-31778411 | None:intergenic | 40.0% | |
| TACTTGTATGGCTTCTTAGG+TGG | + | chr6_4:31778418-31778437 | None:intergenic | 40.0% | |
| GGATACTTGTATGGCTTCTT+AGG | + | chr6_4:31778421-31778440 | None:intergenic | 40.0% | |
| AAAGTGGAAATCACACCTTG+AGG | - | chr6_4:31778700-31778719 | Msa0985360:intron | 40.0% | |
| ! | TTTTAGCAATCCACACCTCA+AGG | + | chr6_4:31778718-31778737 | None:intergenic | 40.0% |
| AAAGTCAAGCTTTCACTACC+AGG | - | chr6_4:31779252-31779271 | Msa0985360:CDS | 40.0% | |
| ! | TTGTCTAAGATATGTCAGCC+TGG | + | chr6_4:31779273-31779292 | None:intergenic | 40.0% |
| AAACATGATCGATGGATCGA+TGG | - | chr6_4:31779483-31779502 | Msa0985360:CDS | 40.0% | |
| TAAGGAAACTTTGGTGGAGG+TGG | + | chr6_4:31778106-31778125 | None:intergenic | 45.0% | |
| TGGTAAGGAAACTTTGGTGG+AGG | + | chr6_4:31778109-31778128 | None:intergenic | 45.0% | |
| GTGGGAGTGGATATGAGTAA+TGG | + | chr6_4:31778129-31778148 | None:intergenic | 45.0% | |
| !! | TACTTGTAAACTGGTGGTGG+AGG | + | chr6_4:31778253-31778272 | None:intergenic | 45.0% |
| ! | TAGTAATAGGGTGTTCGACG+CGG | + | chr6_4:31778295-31778314 | None:intergenic | 45.0% |
| TACTTGTAGGGCTTCCTATG+TGG | + | chr6_4:31778379-31778398 | None:intergenic | 45.0% | |
| TTGTATGGCTTCTTAGGTGG+TGG | + | chr6_4:31778415-31778434 | None:intergenic | 45.0% | |
| GGTGGAGATGGATACTTGTA+TGG | + | chr6_4:31778430-31778449 | None:intergenic | 45.0% | |
| TTGTACTTGTAGACTGGTGG+TGG | + | chr6_4:31778451-31778470 | None:intergenic | 45.0% | |
| GACTTGTACTTGTAGACTGG+TGG | + | chr6_4:31778454-31778473 | None:intergenic | 45.0% | |
| ! | GGTGACTTGTACTTGTAGAC+TGG | + | chr6_4:31778457-31778476 | None:intergenic | 45.0% |
| ATTTAGTAGTGGTAAGGGGG+AGG | + | chr6_4:31778481-31778500 | None:intergenic | 45.0% | |
| TAAGGAAACTTTGGTGGAGG+TGG | + | chr6_4:31778106-31778125 | None:intergenic | 45.0% | |
| TGGTAAGGAAACTTTGGTGG+AGG | + | chr6_4:31778109-31778128 | None:intergenic | 45.0% | |
| GTGGGAGTGGATATGAGTAA+TGG | + | chr6_4:31778129-31778148 | None:intergenic | 45.0% | |
| !! | TACTTGTAAACTGGTGGTGG+AGG | + | chr6_4:31778253-31778272 | None:intergenic | 45.0% |
| ! | TAGTAATAGGGTGTTCGACG+CGG | + | chr6_4:31778295-31778314 | None:intergenic | 45.0% |
| TACTTGTAGGGCTTCCTATG+TGG | + | chr6_4:31778379-31778398 | None:intergenic | 45.0% | |
| TTGTATGGCTTCTTAGGTGG+TGG | + | chr6_4:31778415-31778434 | None:intergenic | 45.0% | |
| GGTGGAGATGGATACTTGTA+TGG | + | chr6_4:31778430-31778449 | None:intergenic | 45.0% | |
| TTGTACTTGTAGACTGGTGG+TGG | + | chr6_4:31778451-31778470 | None:intergenic | 45.0% | |
| GACTTGTACTTGTAGACTGG+TGG | + | chr6_4:31778454-31778473 | None:intergenic | 45.0% | |
| ! | GGTGACTTGTACTTGTAGAC+TGG | + | chr6_4:31778457-31778476 | None:intergenic | 45.0% |
| ATTTAGTAGTGGTAAGGGGG+AGG | + | chr6_4:31778481-31778500 | None:intergenic | 45.0% | |
| AACTTTGGTGGAGGTGGTGA+AGG | + | chr6_4:31778100-31778119 | None:intergenic | 50.0% | |
| !!! | GGTTTTTTAGGAGGTGGGAG+TGG | + | chr6_4:31778142-31778161 | None:intergenic | 50.0% |
| TTGTAGGGCTTCTTTGGTGG+CGG | + | chr6_4:31778220-31778239 | None:intergenic | 50.0% | |
| !! | TAAACTGGTGGTGGAGGTGA+TGG | + | chr6_4:31778247-31778266 | None:intergenic | 50.0% |
| TTGTAGGGCTTCCTATGTGG+TGG | + | chr6_4:31778376-31778395 | None:intergenic | 50.0% | |
| !! | TAGGTGGTGGTGGAGGAAAT+TGG | + | chr6_4:31778402-31778421 | None:intergenic | 50.0% |
| ! | TATGGCTTCTTAGGTGGTGG+TGG | + | chr6_4:31778412-31778431 | None:intergenic | 50.0% |
| !! | TACTTGTAGACTGGTGGTGG+TGG | + | chr6_4:31778448-31778467 | None:intergenic | 50.0% |
| GGAAATCACACCTTGAGGTG+TGG | - | chr6_4:31778705-31778724 | Msa0985360:intron | 50.0% | |
| AACTTTGGTGGAGGTGGTGA+AGG | + | chr6_4:31778100-31778119 | None:intergenic | 50.0% | |
| !!! | GGTTTTTTAGGAGGTGGGAG+TGG | + | chr6_4:31778142-31778161 | None:intergenic | 50.0% |
| TTGTAGGGCTTCTTTGGTGG+CGG | + | chr6_4:31778220-31778239 | None:intergenic | 50.0% | |
| !! | TAAACTGGTGGTGGAGGTGA+TGG | + | chr6_4:31778247-31778266 | None:intergenic | 50.0% |
| TTGTAGGGCTTCCTATGTGG+TGG | + | chr6_4:31778376-31778395 | None:intergenic | 50.0% | |
| !! | TAGGTGGTGGTGGAGGAAAT+TGG | + | chr6_4:31778402-31778421 | None:intergenic | 50.0% |
| ! | TATGGCTTCTTAGGTGGTGG+TGG | + | chr6_4:31778412-31778431 | None:intergenic | 50.0% |
| !! | TACTTGTAGACTGGTGGTGG+TGG | + | chr6_4:31778448-31778467 | None:intergenic | 50.0% |
| GGAAATCACACCTTGAGGTG+TGG | - | chr6_4:31778705-31778724 | Msa0985360:intron | 50.0% | |
| ! | TAATAGGGTGTTCGACGCGG+TGG | + | chr6_4:31778292-31778311 | None:intergenic | 55.0% |
| ! | TAGTAGTAGGGTGTTCGGCG+TGG | + | chr6_4:31778337-31778356 | None:intergenic | 55.0% |
| TAGGGCTTCCTATGTGGTGG+TGG | + | chr6_4:31778373-31778392 | None:intergenic | 55.0% | |
| !! | TAGACTGGTGGTGGTGGAGA+TGG | + | chr6_4:31778442-31778461 | None:intergenic | 55.0% |
| TAGTAGTGGTAAGGGGGAGG+AGG | + | chr6_4:31778478-31778497 | None:intergenic | 55.0% | |
| ! | TAATAGGGTGTTCGACGCGG+TGG | + | chr6_4:31778292-31778311 | None:intergenic | 55.0% |
| ! | TAGTAGTAGGGTGTTCGGCG+TGG | + | chr6_4:31778337-31778356 | None:intergenic | 55.0% |
| TAGGGCTTCCTATGTGGTGG+TGG | + | chr6_4:31778373-31778392 | None:intergenic | 55.0% | |
| !! | TAGACTGGTGGTGGTGGAGA+TGG | + | chr6_4:31778442-31778461 | None:intergenic | 55.0% |
| TAGTAGTGGTAAGGGGGAGG+AGG | + | chr6_4:31778478-31778497 | None:intergenic | 55.0% | |
| !! | TAGGGCTTCTTTGGTGGCGG+TGG | + | chr6_4:31778217-31778236 | None:intergenic | 60.0% |
| ! | TAGTAGGGTGTTCGGCGTGG+TGG | + | chr6_4:31778334-31778353 | None:intergenic | 60.0% |
| GGTCACCACCACCACCACAT+AGG | - | chr6_4:31778362-31778381 | Msa0985360:intron | 60.0% | |
| !! | GGCTTCCTATGTGGTGGTGG+TGG | + | chr6_4:31778370-31778389 | None:intergenic | 60.0% |
| !! | GGCTTCTTAGGTGGTGGTGG+AGG | + | chr6_4:31778409-31778428 | None:intergenic | 60.0% |
| !! | TAGGGCTTCTTTGGTGGCGG+TGG | + | chr6_4:31778217-31778236 | None:intergenic | 60.0% |
| ! | TAGTAGGGTGTTCGGCGTGG+TGG | + | chr6_4:31778334-31778353 | None:intergenic | 60.0% |
| GGTCACCACCACCACCACAT+AGG | - | chr6_4:31778362-31778381 | Msa0985360:intron | 60.0% | |
| !! | GGCTTCCTATGTGGTGGTGG+TGG | + | chr6_4:31778370-31778389 | None:intergenic | 60.0% |
| !! | GGCTTCTTAGGTGGTGGTGG+AGG | + | chr6_4:31778409-31778428 | None:intergenic | 60.0% |
| !! | TTCTTTGGTGGCGGTGGCGG+AGG | + | chr6_4:31778211-31778230 | None:intergenic | 65.0% |
| !! | GGCTTCTTTGGTGGCGGTGG+CGG | + | chr6_4:31778214-31778233 | None:intergenic | 65.0% |
| ! | TAGGGTGTTCGACGCGGTGG+TGG | + | chr6_4:31778289-31778308 | None:intergenic | 65.0% |
| ! | TAGGGTGTTCGGCGTGGTGG+TGG | + | chr6_4:31778331-31778350 | None:intergenic | 65.0% |
| !! | TTCTTTGGTGGCGGTGGCGG+AGG | + | chr6_4:31778211-31778230 | None:intergenic | 65.0% |
| !! | GGCTTCTTTGGTGGCGGTGG+CGG | + | chr6_4:31778214-31778233 | None:intergenic | 65.0% |
| ! | TAGGGTGTTCGACGCGGTGG+TGG | + | chr6_4:31778289-31778308 | None:intergenic | 65.0% |
| ! | TAGGGTGTTCGGCGTGGTGG+TGG | + | chr6_4:31778331-31778350 | None:intergenic | 65.0% |
| !! | GTTCGACGCGGTGGTGGTGG+TGG | + | chr6_4:31778283-31778302 | None:intergenic | 70.0% |
| ! | GGTGTTCGACGCGGTGGTGG+TGG | + | chr6_4:31778286-31778305 | None:intergenic | 70.0% |
| !! | GGTGTTCGGCGTGGTGGTGG+TGG | + | chr6_4:31778328-31778347 | None:intergenic | 70.0% |
| !! | GTTCGACGCGGTGGTGGTGG+TGG | + | chr6_4:31778283-31778302 | None:intergenic | 70.0% |
| ! | GGTGTTCGACGCGGTGGTGG+TGG | + | chr6_4:31778286-31778305 | None:intergenic | 70.0% |
| !! | GGTGTTCGGCGTGGTGGTGG+TGG | + | chr6_4:31778328-31778347 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 31778043 | 31779512 | 31778043 | ID=Msa0985360;Name=Msa0985360 |
| chr6_4 | mRNA | 31778043 | 31779512 | 31778043 | ID=Msa0985360-mRNA-1;Parent=Msa0985360;Name=Msa0985360-mRNA-1;_AED=0.40;_eAED=0.83;_QI=0|0|0.33|0.66|0.5|0.33|3|2|155 |
| chr6_4 | exon | 31778043 | 31778099 | 31778043 | ID=Msa0985360-mRNA-1:exon:8482;Parent=Msa0985360-mRNA-1 |
| chr6_4 | exon | 31779091 | 31779284 | 31779091 | ID=Msa0985360-mRNA-1:exon:8481;Parent=Msa0985360-mRNA-1 |
| chr6_4 | exon | 31779294 | 31779512 | 31779294 | ID=Msa0985360-mRNA-1:exon:8480;Parent=Msa0985360-mRNA-1 |
| chr6_4 | CDS | 31779294 | 31779512 | 31779294 | ID=Msa0985360-mRNA-1:cds;Parent=Msa0985360-mRNA-1 |
| chr6_4 | CDS | 31779091 | 31779284 | 31779091 | ID=Msa0985360-mRNA-1:cds;Parent=Msa0985360-mRNA-1 |
| chr6_4 | CDS | 31778045 | 31778099 | 31778045 | ID=Msa0985360-mRNA-1:cds;Parent=Msa0985360-mRNA-1 |
| chr6_4 | three_prime_UTR | 31778043 | 31778044 | 31778043 | ID=Msa0985360-mRNA-1:three_prime_utr;Parent=Msa0985360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
