AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0129290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129290 MtrunA17_Chr5g0404511 89.308 318 3 1 294 580 1 318 0.0 565
Msa0129290 MtrunA17_Chr5g0404511 88.959 317 4 1 1 286 1 317 0.0 563
Msa0129290 MtrunA17_Chr5g0404481 88.994 318 4 1 294 580 1 318 0.0 565
Msa0129290 MtrunA17_Chr5g0404481 88.644 317 5 1 1 286 1 317 0.0 562
Msa0129290 MtrunA17_Chr5g0404471 54.062 320 103 4 294 580 1 309 2.90e-111 335
Msa0129290 MtrunA17_Chr5g0404471 53.605 319 104 4 1 286 1 308 3.44e-110 332
Msa0129290 MtrunA17_Chr3g0141681 53.271 321 105 4 294 580 1 310 2.60e-104 317
Msa0129290 MtrunA17_Chr3g0141681 53.125 320 105 4 1 286 1 309 6.22e-104 316
Msa0129290 MtrunA17_Chr3g0141691 50.784 319 114 3 294 580 1 308 1.06e-100 307
Msa0129290 MtrunA17_Chr3g0141691 50.943 318 113 3 1 286 1 307 1.60e-100 307
Msa0129290 MtrunA17_Chr3g0144701 50.000 314 114 3 5 286 9 311 1.35e-97 300
Msa0129290 MtrunA17_Chr3g0144701 49.524 315 116 3 298 580 9 312 3.97e-97 298
Msa0129290 MtrunA17_Chr4g0035131 45.307 309 126 3 7 283 47 344 1.72e-83 265
Msa0129290 MtrunA17_Chr4g0035131 44.688 320 131 4 292 576 36 344 3.19e-83 264
Msa0129290 MtrunA17_Chr4g0035111 44.231 312 131 3 6 285 8 308 1.00e-80 256
Msa0129290 MtrunA17_Chr4g0035111 44.231 312 131 3 299 578 8 308 1.43e-80 256
Msa0129290 MtrunA17_Chr5g0409651 41.693 319 139 5 297 579 3 310 5.15e-74 238
Msa0129290 MtrunA17_Chr5g0409651 41.379 319 140 5 4 286 3 310 1.59e-73 237
Msa0129290 MtrunA17_Chr5g0409641 41.379 319 140 5 297 579 3 310 2.76e-73 236
Msa0129290 MtrunA17_Chr5g0409641 41.066 319 141 5 4 286 3 310 8.58e-73 235
Msa0129290 MtrunA17_Chr8g0369391 38.941 321 148 7 297 580 3 312 2.21e-66 218
Msa0129290 MtrunA17_Chr8g0369391 38.994 318 146 7 4 284 3 309 7.19e-66 217
Msa0129290 MtrunA17_Chr4g0035121 36.478 318 157 3 297 580 3 309 8.17e-65 214
Msa0129290 MtrunA17_Chr4g0035121 36.164 318 158 3 4 287 3 309 3.25e-64 213
Msa0129290 MtrunA17_Chr3g0078831 36.278 317 157 6 295 580 3 305 2.13e-58 197
Msa0129290 MtrunA17_Chr3g0078831 35.962 317 158 6 2 287 3 305 6.88e-58 196
Msa0129290 MtrunA17_Chr3g0078901 36.562 320 152 6 295 580 3 305 2.37e-58 197
Msa0129290 MtrunA17_Chr3g0078901 36.250 320 153 6 2 287 3 305 7.79e-58 196
Msa0129290 MtrunA17_Chr1g0198771 32.602 319 169 4 296 580 12 318 2.99e-53 185
Msa0129290 MtrunA17_Chr1g0198771 35.664 286 165 5 3 284 12 282 4.66e-53 184
Msa0129290 MtrunA17_Chr3g0078941 32.512 203 104 3 408 580 12 211 3.18e-29 115
Msa0129290 MtrunA17_Chr3g0078941 32.178 202 104 3 115 286 12 210 1.29e-28 114
Msa0129290 MtrunA17_Chr3g0078951 42.241 116 54 3 2 117 3 105 4.32e-18 80.5
Msa0129290 MtrunA17_Chr3g0078951 42.241 116 54 3 295 410 3 105 4.32e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0129290 AT4G39230.1 48.589 319 121 3 294 580 1 308 1.02e-96 297
Msa0129290 AT4G39230.1 48.428 318 121 3 1 286 1 307 2.52e-96 296
Msa0129290 AT1G75280.1 49.688 320 116 5 294 579 1 309 1.21e-96 297
Msa0129290 AT1G75280.1 49.375 320 117 5 1 286 1 309 3.63e-96 296
Msa0129290 AT1G75290.1 48.910 321 118 5 294 579 1 310 2.61e-96 297
Msa0129290 AT1G75290.1 48.598 321 119 5 1 286 1 310 7.99e-96 295
Msa0129290 AT1G75290.2 48.171 328 124 5 287 579 21 337 5.22e-96 297
Msa0129290 AT1G75290.2 48.598 321 119 5 1 286 28 337 3.14e-95 295
Msa0129290 AT1G75300.1 47.892 332 116 6 294 579 1 321 6.93e-91 283
Msa0129290 AT1G75300.1 47.590 332 117 6 1 286 1 321 2.05e-90 282
Msa0129290 AT1G19540.1 45.141 319 128 5 298 580 3 310 2.24e-81 258
Msa0129290 AT1G19540.1 44.969 318 128 5 5 286 3 309 1.60e-80 256
Msa0129290 AT1G19540.2 49.035 259 117 4 298 552 3 250 3.81e-73 235
Msa0129290 AT1G19540.2 48.649 259 118 4 5 259 3 250 1.15e-72 233
Msa0129290 AT1G32100.1 38.318 321 149 5 297 580 9 317 2.42e-66 219
Msa0129290 AT1G32100.1 37.695 321 151 5 4 287 9 317 4.03e-65 216
Msa0129290 AT4G13660.1 38.941 321 147 5 297 580 9 317 1.85e-65 216
Msa0129290 AT4G13660.1 38.125 320 149 5 4 286 9 316 1.00e-63 212
Msa0129290 AT4G13660.2 38.941 321 147 5 297 580 9 317 1.85e-65 216
Msa0129290 AT4G13660.2 38.125 320 149 5 4 286 9 316 1.00e-63 212
Msa0129290 AT4G34540.1 33.861 316 161 2 4 287 7 306 1.06e-62 209
Msa0129290 AT4G34540.1 33.544 316 162 2 297 580 7 306 2.35e-62 208

Find 133 sgRNAs with CRISPR-Local

Find 692 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGCTCTTCCTTGGTTTC+AGG 0.162720 1_3:+59202613 None:intergenic
ATAAGCTCTTCCTTGGTTTC+AGG 0.170156 1_3:+59193782 None:intergenic
AAAGAGCAATAACCTCATTT+TGG 0.179311 1_3:+59192923 None:intergenic
AAAGAGCAATAACCTCATTT+TGG 0.179311 1_3:+59201766 None:intergenic
CCTTTGTTGCCACGCCTTTA+CGG 0.184750 1_3:-59202077 Msa0129290:CDS
CGGGACAAAGTTGTCATTCT+TGG 0.251205 1_3:-59193167 Msa0129290:CDS
CGGGACAAAGTTGTCATTCT+TGG 0.251205 1_3:-59202007 Msa0129290:CDS
ATTGATAATTACCAATCTTT+AGG 0.253564 1_3:-59193761 Msa0129290:CDS
TTCAGAAGCTTCAATATCTT+TGG 0.254251 1_3:+59192512 None:intergenic
TTCAGAAGCTTCAATATCTT+TGG 0.254251 1_3:+59201355 None:intergenic
ATTGACAATTACCAATCTTT+AGG 0.260595 1_3:-59202592 Msa0129290:CDS
AAAATGAGGTTATTGCTCTT+TGG 0.277659 1_3:-59192921 Msa0129290:CDS
AAAATGAGGTTATTGCTCTT+TGG 0.277659 1_3:-59201764 Msa0129290:CDS
CTTTGTTGCCACGCCTTTAC+CGG 0.290435 1_3:-59193236 Msa0129290:CDS
AATTCTTGGGGAGTCTAATA+TGG 0.296473 1_3:+59192953 None:intergenic
AATTCTTGGGGAGTCTAATA+TGG 0.296473 1_3:+59201796 None:intergenic
AAATGAGGTTATTGCTCTTT+GGG 0.307200 1_3:-59192920 Msa0129290:CDS
AAATGAGGTTATTGCTCTTT+GGG 0.307200 1_3:-59201763 Msa0129290:CDS
CTTTGTTGCCACGCCTTTAC+GGG 0.310036 1_3:-59202076 Msa0129290:CDS
CCATTGGAAGACACATAGTT+TGG 0.324909 1_3:-59193895 Msa0129290:CDS
CCATTGGAAGACACATAGTT+TGG 0.324909 1_3:-59202726 Msa0129290:CDS
GGGATCATTTGCTGCTCTAA+TGG 0.371239 1_3:+59192996 None:intergenic
GGGATCATTTGCTGCTCTAA+TGG 0.371239 1_3:+59201839 None:intergenic
TTAGCAGCTGTAATAAGCTT+TGG 0.390009 1_3:+59193806 None:intergenic
TTAGCAGCTGTAATAAGCTT+TGG 0.390009 1_3:+59202637 None:intergenic
CTTCGGATTCAATTACTCTT+CGG 0.415537 1_3:+59202116 None:intergenic
CGGTTACTTCTTACGTAACT+TGG 0.420584 1_3:-59193216 Msa0129290:CDS
AGGAAATCCAACATATGCTT+TGG 0.425743 1_3:-59193858 Msa0129290:CDS
AGGAAATCCAACATATGCTT+TGG 0.425743 1_3:-59202689 Msa0129290:CDS
CTTCGGCTTCAATTACTCTT+CGG 0.426997 1_3:+59193276 None:intergenic
ATCCTCATCCTAGGACCAAC+AGG 0.432495 1_3:-59193920 Msa0129290:CDS
ATCCTCATCCTAGGACCAAC+AGG 0.432495 1_3:-59202751 Msa0129290:CDS
CAATGGCTCCTGTTGGTCCT+AGG 0.437873 1_3:+59193912 None:intergenic
CAATGGCTCCTGTTGGTCCT+AGG 0.437873 1_3:+59202743 None:intergenic
ATTAAAGCAATTAAAGAAGC+TGG 0.439051 1_3:-59193537 Msa0129290:CDS
ATTAAAGCAATTAAAGAAGC+TGG 0.439051 1_3:-59202372 Msa0129290:CDS
TTTGGCTTGTTAACATTGCC+AGG 0.439374 1_3:+59193824 None:intergenic
TTTGGCTTGTTAACATTGCC+AGG 0.439374 1_3:+59202655 None:intergenic
GTAGAATAACTCCTAAAGAT+TGG 0.448622 1_3:+59193750 None:intergenic
GTAGAATAACTCCTAAAGAT+TGG 0.448622 1_3:+59202581 None:intergenic
ATTATCAATAAGCTCTTCCT+TGG 0.453266 1_3:+59193775 None:intergenic
TGATCATGAAACTCTTGTTA+AGG 0.455304 1_3:-59193628 Msa0129290:CDS
TGATCATGAAACTCTTGTTA+AGG 0.455304 1_3:-59202463 Msa0129290:CDS
TTTCTTCTTAATAGTTTCAC+AGG 0.455360 1_3:-59201237 Msa0129290:intron
TTTCTAACCAAAGCATATGT+TGG 0.458494 1_3:+59193851 None:intergenic
TTTCTAACCAAAGCATATGT+TGG 0.458494 1_3:+59202682 None:intergenic
GAAGCTTCAATATCTTTGGC+TGG 0.462307 1_3:+59192516 None:intergenic
GAAGCTTCAATATCTTTGGC+TGG 0.462307 1_3:+59201359 None:intergenic
TAAAGAAGCTGGAAACGTTA+AGG 0.465104 1_3:-59193526 Msa0129290:intron
TAAAGAAGCTGGAAACGTTA+AGG 0.465104 1_3:-59202361 Msa0129290:intron
ACAGCTTTGTTCAATGTGTT+GGG 0.466334 1_3:+59192976 None:intergenic
ACAGCTTTGTTCAATGTGTT+GGG 0.466334 1_3:+59201819 None:intergenic
CAAGTTACGTAAGAAGTAAC+CGG 0.467564 1_3:+59193217 None:intergenic
CATTGGAAGACACATAGTTT+GGG 0.475312 1_3:-59193894 Msa0129290:CDS
CATTGGAAGACACATAGTTT+GGG 0.475312 1_3:-59202725 Msa0129290:CDS
AAAGTTGTCATTCTTGGAGA+TGG 0.476919 1_3:-59193161 Msa0129290:CDS
AAAGTTGTCATTCTTGGAGA+TGG 0.476919 1_3:-59202001 Msa0129290:CDS
GACAGCTTTGTTCAATGTGT+TGG 0.480648 1_3:+59192975 None:intergenic
GACAGCTTTGTTCAATGTGT+TGG 0.480648 1_3:+59201818 None:intergenic
ATTGTCAATAAGCTCTTCCT+TGG 0.481411 1_3:+59202606 None:intergenic
TAGACTACTAATTGAGGATC+AGG 0.481816 1_3:-59193568 Msa0129290:CDS
TAGACTACTAATTGAAGATC+AGG 0.483235 1_3:-59202403 Msa0129290:CDS
GAAAACAAAATCCTCATCCT+AGG 0.488477 1_3:-59193929 Msa0129290:CDS
GAAAACAAAATCCTCATCCT+AGG 0.488477 1_3:-59202760 Msa0129290:CDS
CTCCTGTTGGTCCTAGGATG+AGG 0.489729 1_3:+59193918 None:intergenic
CTCCTGTTGGTCCTAGGATG+AGG 0.489729 1_3:+59202749 None:intergenic
ACGTAAGAAGTAACCGGTAA+AGG 0.493799 1_3:+59193223 None:intergenic
GACATTGTGATCTGTGCTGC+TGG 0.497025 1_3:-59193591 Msa0129290:CDS
GCAGTGGTGTATGTCACATC+AGG 0.513062 1_3:+59192483 None:intergenic
GCAGTGGTGTATGTCACATC+AGG 0.513062 1_3:+59201326 None:intergenic
GGGTTACTTCTTACGTAACT+TGG 0.518462 1_3:-59202056 Msa0129290:CDS
CGGTAAAGGCGTGGCAACAA+AGG 0.521509 1_3:+59193237 None:intergenic
CGACGCAACTGATCCTCCTC+GGG 0.522740 1_3:-59202026 Msa0129290:CDS
CGACACAACTGATCCTCCTC+GGG 0.523381 1_3:-59193186 Msa0129290:CDS
TGAGAAAACTTATGTTTCAG+AGG 0.523834 1_3:-59192875 Msa0129290:CDS
TGAGAAAACTTATGTTTCAG+AGG 0.523834 1_3:-59201718 Msa0129290:CDS
GAATTATTTGACCCAAAATG+AGG 0.524380 1_3:-59192935 Msa0129290:CDS
GAATTATTTGACCCAAAATG+AGG 0.524380 1_3:-59201778 Msa0129290:CDS
CTAGGACCAACAGGAGCCAT+TGG 0.526005 1_3:-59193911 Msa0129290:CDS
CTAGGACCAACAGGAGCCAT+TGG 0.526005 1_3:-59202742 Msa0129290:CDS
GATATTGTGATCTGTGCTGC+TGG 0.528420 1_3:-59202426 Msa0129290:CDS
CCGTAAAGGCGTGGCAACAA+AGG 0.531019 1_3:+59202077 None:intergenic
AACTTGTCTAACTGGCTCAA+CGG 0.536329 1_3:+59193319 None:intergenic
AACTTGTCTAACTGGCTCAA+CGG 0.536329 1_3:+59202159 None:intergenic
GTAAGTGTAAGGAACTCCTT+CGG 0.541959 1_3:+59202099 None:intergenic
AGCTGCTAATCCTGAAACCA+AGG 0.544614 1_3:-59193792 Msa0129290:CDS
AGCTGCTAATCCTGAAACCA+AGG 0.544614 1_3:-59202623 Msa0129290:CDS
GTTTGGGCAAGTATTAAAGC+AGG 0.544920 1_3:-59193878 Msa0129290:CDS
GTTTGGGCAAGTATTAAAGC+AGG 0.544920 1_3:-59202709 Msa0129290:CDS
GTAAGTGTAAGGAACTCCTT+CGG 0.556646 1_3:+59193259 None:intergenic
CTTGGAGATGGAAATGTGAA+AGG 0.559099 1_3:-59193149 Msa0129290:intron
CTTGGAGATGGAAATGTGAA+AGG 0.559099 1_3:-59201989 Msa0129290:intron
TTATGTAACTGAGGCTGATG+TGG 0.559412 1_3:-59201871 Msa0129290:CDS
CCAAACTATGTGTCTTCCAA+TGG 0.559467 1_3:+59193895 None:intergenic
CCAAACTATGTGTCTTCCAA+TGG 0.559467 1_3:+59202726 None:intergenic
ACGTAAGAAGTAACCCGTAA+AGG 0.560505 1_3:+59202063 None:intergenic
TGTCTTCCAATGGCTCCTGT+TGG 0.561834 1_3:+59193905 None:intergenic
TGTCTTCCAATGGCTCCTGT+TGG 0.561834 1_3:+59202736 None:intergenic
ACGTCTAGCCCAAATTCAGA+TGG 0.563905 1_3:+59193356 None:intergenic
ACGTCTAGCCCAAATTCAGA+TGG 0.563905 1_3:+59202196 None:intergenic
TGGCAACAAAGGTAAGTGTA+AGG 0.564377 1_3:+59193248 None:intergenic
TGGCAACAAAGGTAAGTGTA+AGG 0.564377 1_3:+59202088 None:intergenic
TCGACACAACTGATCCTCCT+CGG 0.565344 1_3:-59193187 Msa0129290:CDS
TTCAGGAGCTTATGTAACTG+AGG 0.576478 1_3:-59201880 Msa0129290:intron
GGTGTATGTCACATCAGGAT+AGG 0.580667 1_3:+59192488 None:intergenic
GGTGTATGTCACATCAGGAT+AGG 0.580667 1_3:+59201331 None:intergenic
TCGACGCAACTGATCCTCCT+CGG 0.582325 1_3:-59202027 Msa0129290:CDS
ATCTGAATTTGGGCTAGACG+TGG 0.583561 1_3:-59193354 Msa0129290:CDS
ATCTGAATTTGGGCTAGACG+TGG 0.583561 1_3:-59202194 Msa0129290:CDS
TGCTGGTAGACTACTAATTG+AGG 0.589907 1_3:-59193574 Msa0129290:CDS
ATATGTAACTGAGGCTGATG+TGG 0.591299 1_3:-59193028 Msa0129290:CDS
TTTGGGTCAAATAATTCTTG+GGG 0.592555 1_3:+59192941 None:intergenic
TTTGGGTCAAATAATTCTTG+GGG 0.592555 1_3:+59201784 None:intergenic
CACACACTCACTACTACTTG+TGG 0.607486 1_3:-59202882 Msa0129290:five_prime_UTR
ATTCAAATATTCATCAGCAG+TGG 0.611923 1_3:+59192467 None:intergenic
ATTCAAATATTCATCAGCAG+TGG 0.611923 1_3:+59201310 None:intergenic
CGTCTAGCCCAAATTCAGAT+GGG 0.623219 1_3:+59193357 None:intergenic
CGTCTAGCCCAAATTCAGAT+GGG 0.623219 1_3:+59202197 None:intergenic
GCTAGACGTGGACCGTCATG+AGG 0.623228 1_3:-59193342 Msa0129290:CDS
GCTAGACGTGGACCGTCATG+AGG 0.623228 1_3:-59202182 Msa0129290:CDS
AGAAGTAACCGGTAAAGGCG+TGG 0.632726 1_3:+59193228 None:intergenic
AGAAGTAACCCGTAAAGGCG+TGG 0.632726 1_3:+59202068 None:intergenic
CGAAGAGTAATTGAATCCGA+AGG 0.633822 1_3:-59202115 Msa0129290:CDS
TATGTAACTGAGGCTGATGT+GGG 0.645622 1_3:-59201870 Msa0129290:CDS
CGAAGAGTAATTGAAGCCGA+AGG 0.653960 1_3:-59193275 Msa0129290:CDS
TTCAGGAGCATATGTAACTG+AGG 0.661860 1_3:-59193037 Msa0129290:intron
CTGGCTCAACGGCCTCATGA+CGG 0.663092 1_3:+59193330 None:intergenic
CTGGCTCAACGGCCTCATGA+CGG 0.663092 1_3:+59202170 None:intergenic
ATGACAACTTTGTCCCGAGG+AGG 0.669433 1_3:+59193173 None:intergenic
ATGACAACTTTGTCCCGAGG+AGG 0.669433 1_3:+59202013 None:intergenic
AGAATGACAACTTTGTCCCG+AGG 0.692025 1_3:+59193170 None:intergenic
AGAATGACAACTTTGTCCCG+AGG 0.692025 1_3:+59202010 None:intergenic
TATGTAACTGAGGCTGATGT+GGG 0.693471 1_3:-59193027 Msa0129290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTTTTTTATTTAAA+TGG - chr1_3:59198397-59198416 Msa0129290:intron 0.0%
!!! ATATTTTTTTTTATTTAAAT+GGG - chr1_3:59198398-59198417 Msa0129290:intron 0.0%
!! CAAAAAATATTCTTAAAAAT+GGG + chr1_3:59195395-59195414 None:intergenic 10.0%
!! ATATAATATGATTTGAATTA+CGG - chr1_3:59195738-59195757 Msa0129290:intron 10.0%
!! ATATATTAAATAATCATGTT+CGG - chr1_3:59196017-59196036 Msa0129290:intron 10.0%
!! TGAATAAATAAAAACTAAAA+CGG + chr1_3:59196293-59196312 None:intergenic 10.0%
!!! AACATACTTTTTAAATTTAT+TGG - chr1_3:59196703-59196722 Msa0129290:intron 10.0%
!! ACTATTATAAAATTAAACTA+TGG - chr1_3:59197124-59197143 Msa0129290:intron 10.0%
!!! TATTAGACTTAATTTTTTTT+AGG - chr1_3:59198428-59198447 Msa0129290:intron 10.0%
!!! TATTTTTTATTTAACTTTCT+AGG - chr1_3:59200555-59200574 Msa0129290:intron 10.0%
!!! ATATACATATAACTTTTTTA+AGG + chr1_3:59200733-59200752 None:intergenic 10.0%
!!! ATATACATATAACTTTTTTA+AGG + chr1_3:59200733-59200752 None:intergenic 10.0%
!! TGTAAAATATTACATCAATT+GGG + chr1_3:59194182-59194201 None:intergenic 15.0%
!! TTGTAAAATATTACATCAAT+TGG + chr1_3:59194183-59194202 None:intergenic 15.0%
!! TCAATCATCTTAAAAAATAT+CGG + chr1_3:59194442-59194461 None:intergenic 15.0%
!!! AAATAATATTGTCTTTTTGT+TGG - chr1_3:59194461-59194480 Msa0129290:intron 15.0%
!! ATGATAAACTGTAAAATTAT+TGG - chr1_3:59194686-59194705 Msa0129290:intron 15.0%
!! GCAAAAAATATTCTTAAAAA+TGG + chr1_3:59195396-59195415 None:intergenic 15.0%
!!! TTTTAAGAATATTTTTTGCA+CGG - chr1_3:59195397-59195416 Msa0129290:intron 15.0%
!! TATAATATGATTTGAATTAC+GGG - chr1_3:59195739-59195758 Msa0129290:intron 15.0%
!!! ATTCAAATCATTTTTTTTAG+TGG + chr1_3:59195933-59195952 None:intergenic 15.0%
!! AAAAAAATGATTTGAATTTG+TGG - chr1_3:59195936-59195955 Msa0129290:intron 15.0%
!! TATATTAAATAATCATGTTC+GGG - chr1_3:59196018-59196037 Msa0129290:intron 15.0%
!! GAATAAATAAAAACTAAAAC+GGG + chr1_3:59196292-59196311 None:intergenic 15.0%
!!! ACTTTAGAATTTTAAAACTT+TGG - chr1_3:59196478-59196497 Msa0129290:intron 15.0%
!!! CTTTAGAATTTTAAAACTTT+GGG - chr1_3:59196479-59196498 Msa0129290:intron 15.0%
!! ACAAGTAAACTTAATAAAAA+TGG + chr1_3:59196515-59196534 None:intergenic 15.0%
!! CATTGAATAATTAATGTATT+TGG + chr1_3:59196759-59196778 None:intergenic 15.0%
!! ACATAATAAGTTCAAAATTT+AGG - chr1_3:59197215-59197234 Msa0129290:intron 15.0%
!!! TCAAATTATTTTCACATTTT+AGG - chr1_3:59197418-59197437 Msa0129290:intron 15.0%
!!! TTAATTATTATCCACATTTT+AGG - chr1_3:59197466-59197485 Msa0129290:intron 15.0%
!!! ATTTTTTTATATTTCGTTTC+AGG + chr1_3:59198130-59198149 None:intergenic 15.0%
!! TTTGTATTAATCAGTTAATT+TGG + chr1_3:59198276-59198295 None:intergenic 15.0%
!! TTAACTGATTAATACAAATT+AGG - chr1_3:59198278-59198297 Msa0129290:intron 15.0%
!! TAACTGATTAATACAAATTA+GGG - chr1_3:59198279-59198298 Msa0129290:intron 15.0%
!!! GTTTTTATCAAAATCAATTA+AGG + chr1_3:59199289-59199308 None:intergenic 15.0%
!!! ATATTAGTTTATTTTGATTG+CGG - chr1_3:59200089-59200108 Msa0129290:intron 15.0%
!!! TTTTCTTGAATTTTTCATTA+TGG + chr1_3:59200162-59200181 None:intergenic 15.0%
!! ATTAGTTAAAGAAACATAAA+AGG + chr1_3:59200411-59200430 None:intergenic 15.0%
!! TTTAATTATTGGATGTTAAT+CGG + chr1_3:59200446-59200465 None:intergenic 15.0%
!! ACAACTATTATAAAAAAACT+TGG + chr1_3:59200833-59200852 None:intergenic 15.0%
!! ACAACAATGAATATTAAATT+TGG - chr1_3:59201189-59201208 Msa0129290:intron 15.0%
!!! ATACTTTGTTTGATATTTAT+AGG + chr1_3:59201273-59201292 None:intergenic 15.0%
!!! ATTTGCCTTAATTTTTTTTC+AGG - chr1_3:59193439-59193458 Msa0129290:intron 20.0%
!! TATCAACAATGATTGATTAA+CGG + chr1_3:59193713-59193732 None:intergenic 20.0%
!! TATCATTCACAACAAATAAA+AGG - chr1_3:59193932-59193951 Msa0129290:CDS 20.0%
!! TTATTAATAACAAGACAACA+AGG + chr1_3:59194154-59194173 None:intergenic 20.0%
!! ACAAAACATTAAGGATATAT+TGG + chr1_3:59194715-59194734 None:intergenic 20.0%
!!! TATCCTTAATGTTTTGTATA+AGG - chr1_3:59194718-59194737 Msa0129290:intron 20.0%
!! CATATTATATGCAGATTAAT+TGG + chr1_3:59195728-59195747 None:intergenic 20.0%
!! ATATATTTCAATTGTCTACA+CGG + chr1_3:59196003-59196022 None:intergenic 20.0%
!! TTTGCTAAAATATGATTAGA+TGG - chr1_3:59196363-59196382 Msa0129290:intron 20.0%
!!! TTTTTTCTTATAAATGTGAC+CGG + chr1_3:59196685-59196704 None:intergenic 20.0%
!!! AAAAAAGTTCAAGTTCATTT+TGG - chr1_3:59196836-59196855 Msa0129290:intron 20.0%
!!! AAAAAGTTCAAGTTCATTTT+GGG - chr1_3:59196837-59196856 Msa0129290:intron 20.0%
!!! AAATTAAACTATGGTGTTAA+AGG - chr1_3:59197133-59197152 Msa0129290:intron 20.0%
!!! AATTAAACTATGGTGTTAAA+GGG - chr1_3:59197134-59197153 Msa0129290:intron 20.0%
!! TTAAATGTTTACTTCTTTGT+TGG - chr1_3:59197260-59197279 Msa0129290:intron 20.0%
!! TTTCTATAATTTGGCTAATT+TGG + chr1_3:59197559-59197578 None:intergenic 20.0%
!! TTTACTTATTTGCAAATTGA+AGG + chr1_3:59197787-59197806 None:intergenic 20.0%
!! TTTGCAAATAAGTAAAAGTA+TGG - chr1_3:59197791-59197810 Msa0129290:intron 20.0%
!! TGTATAAAAGAAATCCAATT+TGG - chr1_3:59197868-59197887 Msa0129290:intron 20.0%
!! CTTAAAATTTCATGTTTGAA+TGG - chr1_3:59197913-59197932 Msa0129290:intron 20.0%
!!! AAATTGTGTTTTTACTTTAC+TGG + chr1_3:59198058-59198077 None:intergenic 20.0%
!! AAAAAAATTAAGTGAAAGAG+AGG - chr1_3:59198142-59198161 Msa0129290:intron 20.0%
!! AACTGATTAATACAAATTAG+GGG - chr1_3:59198280-59198299 Msa0129290:intron 20.0%
!! ATTTGTAAGAAACTCATTTA+TGG - chr1_3:59198883-59198902 Msa0129290:intron 20.0%
!! TTTGTAAGAAACTCATTTAT+GGG - chr1_3:59198884-59198903 Msa0129290:intron 20.0%
!! TAAATGTTTAACTCCATATT+TGG - chr1_3:59199145-59199164 Msa0129290:intron 20.0%
!! TTGACTAAAAAAAATTGCAA+CGG + chr1_3:59199172-59199191 None:intergenic 20.0%
!! TTATTGTTCTTGAAATATGT+GGG + chr1_3:59199311-59199330 None:intergenic 20.0%
!! TTTATTGTTCTTGAAATATG+TGG + chr1_3:59199312-59199331 None:intergenic 20.0%
!!! TCACAATAGAGTATTATTTT+AGG - chr1_3:59199432-59199451 Msa0129290:intron 20.0%
!!! CACAATAGAGTATTATTTTA+GGG - chr1_3:59199433-59199452 Msa0129290:intron 20.0%
!! TAACGATATTATTCAAGAAA+AGG - chr1_3:59200267-59200286 Msa0129290:intron 20.0%
!!! GACTACTAATATGTTTTATA+CGG - chr1_3:59201104-59201123 Msa0129290:intron 20.0%
!!! TACTAGTTATTTTTTTCCAA+TGG - chr1_3:59201379-59201398 Msa0129290:intron 20.0%
!!! ATTGATAATTACCAATCTTT+AGG - chr1_3:59201575-59201594 Msa0129290:intron 20.0%
!! ACTTATTTGAACTTATTTAC+TGG + chr1_3:59201856-59201875 None:intergenic 20.0%
!! TATCAACAATGATTGATTAA+CGG + chr1_3:59193713-59193732 None:intergenic 20.0%
!! TATCATTCACAACAAATAAA+AGG - chr1_3:59193932-59193951 Msa0129290:CDS 20.0%
! AAAAAACAAGTGTGTTTATG+TGG + chr1_3:59192515-59192534 None:intergenic 25.0%
!!! CTAAAGTTACTTTTTTCCAA+TGG - chr1_3:59192548-59192567 Msa0129290:intron 25.0%
! ATTGACAATTACCAATCTTT+AGG - chr1_3:59192744-59192763 Msa0129290:intron 25.0%
! ATTAAAGCAATTAAAGAAGC+TGG - chr1_3:59192964-59192983 Msa0129290:CDS 25.0%
!! AAATTTTTCCCATCTGAATT+TGG - chr1_3:59193131-59193150 Msa0129290:intron 25.0%
!! AATTTTTCCCATCTGAATTT+GGG - chr1_3:59193132-59193151 Msa0129290:intron 25.0%
! AAGCTCCTGAAAAAAAATTA+AGG + chr1_3:59193447-59193466 None:intergenic 25.0%
!!! TTTTGGGTCAAATAATTCTT+GGG + chr1_3:59193556-59193575 None:intergenic 25.0%
!!! ATTTTGGGTCAAATAATTCT+TGG + chr1_3:59193557-59193576 None:intergenic 25.0%
! TTTCTTCTTAATAGTTTCAC+AGG - chr1_3:59194099-59194118 Msa0129290:intron 25.0%
! TAAGTAACATACAATTGATG+TGG + chr1_3:59194130-59194149 None:intergenic 25.0%
! AAATATTACATCAATTGGGA+AGG + chr1_3:59194178-59194197 None:intergenic 25.0%
! AAAAGAAAGCAAGAAACAAA+AGG - chr1_3:59194509-59194528 Msa0129290:intron 25.0%
! AGTCCTTATACAAAACATTA+AGG + chr1_3:59194724-59194743 None:intergenic 25.0%
! TTGATGTAGTCTTCAATATT+GGG - chr1_3:59195195-59195214 Msa0129290:intron 25.0%
! AAGATCATGAATATCTATGA+TGG - chr1_3:59195287-59195306 Msa0129290:intron 25.0%
! AGATCATGAATATCTATGAT+GGG - chr1_3:59195288-59195307 Msa0129290:intron 25.0%
!!! AATATTTTTTGCACGGATAA+TGG - chr1_3:59195404-59195423 Msa0129290:intron 25.0%
! CCAATCAAAAAATAAGCTTT+GGG + chr1_3:59195514-59195533 None:intergenic 25.0%
! TCCAATCAAAAAATAAGCTT+TGG + chr1_3:59195515-59195534 None:intergenic 25.0%
!! TCTTCTTAGAAAACTTGTTT+GGG + chr1_3:59195544-59195563 None:intergenic 25.0%
! ACAATGCATAAAAATATGCA+AGG - chr1_3:59195885-59195904 Msa0129290:intron 25.0%
!!! CAAATCATTTTTTTTAGTGG+TGG + chr1_3:59195930-59195949 None:intergenic 25.0%
!!! TTACTTGTAGAGGTATTAAA+TGG - chr1_3:59196047-59196066 Msa0129290:intron 25.0%
! AAATAAAAACTAAAACGGGT+CGG + chr1_3:59196288-59196307 None:intergenic 25.0%
! CAGAAATATTTATAGTAGAC+CGG - chr1_3:59196610-59196629 Msa0129290:intron 25.0%
!!! GAAACTAGAAAGTAGTTTTT+TGG - chr1_3:59196778-59196797 Msa0129290:intron 25.0%
!!! TTTTTGGTTATAAATGTGAC+CGG - chr1_3:59196794-59196813 Msa0129290:intron 25.0%
! AGTGAAGATATTTGAGAATT+TGG - chr1_3:59197044-59197063 Msa0129290:intron 25.0%
! ACATATTTAGAAATGTTTGG+AGG - chr1_3:59197284-59197303 Msa0129290:intron 25.0%
!!! TTAAGATTTTGATGGTCTAA+AGG + chr1_3:59197496-59197515 None:intergenic 25.0%
! GACCATCAAAATCTTAAAAA+CGG - chr1_3:59197499-59197518 Msa0129290:intron 25.0%
! ACCATCAAAATCTTAAAAAC+GGG - chr1_3:59197500-59197519 Msa0129290:intron 25.0%
! GCATAATGGTTTCTATAATT+TGG + chr1_3:59197568-59197587 None:intergenic 25.0%
! TAAAAACTACTCTTACCTAA+CGG + chr1_3:59197607-59197626 None:intergenic 25.0%
!! ATTTCATTTAGCTTCTAAAG+AGG - chr1_3:59197630-59197649 Msa0129290:intron 25.0%
!! TTTCATTTAGCTTCTAAAGA+GGG - chr1_3:59197631-59197650 Msa0129290:intron 25.0%
! GGCTTAATTAATTACGTATT+TGG - chr1_3:59197812-59197831 Msa0129290:intron 25.0%
! AACAATGTTAATAGCCAAAT+TGG + chr1_3:59197885-59197904 None:intergenic 25.0%
! ATGTTTGAATGGTGAAAAAA+TGG - chr1_3:59197924-59197943 Msa0129290:intron 25.0%
!!! CTATTTTAAAAAGAGAACCA+AGG + chr1_3:59198032-59198051 None:intergenic 25.0%
!!! CTTGGTTCTCTTTTTAAAAT+AGG - chr1_3:59198030-59198049 Msa0129290:intron 25.0%
! GGAATAAACACATCAAAATT+TGG + chr1_3:59198946-59198965 None:intergenic 25.0%
!!! TTCTTGTTGGTTTTAACAAA+AGG - chr1_3:59199103-59199122 Msa0129290:intron 25.0%
! TGACTAAAAAAAATTGCAAC+GGG + chr1_3:59199171-59199190 None:intergenic 25.0%
! CTCTTTGGATTTAATAAGAA+GGG + chr1_3:59199252-59199271 None:intergenic 25.0%
! TCTCTTTGGATTTAATAAGA+AGG + chr1_3:59199253-59199272 None:intergenic 25.0%
! AATTACAAGAGTTGAATAAC+AGG - chr1_3:59199487-59199506 Msa0129290:intron 25.0%
!! GTTGATAAATTCTTCAAACA+TGG + chr1_3:59199703-59199722 None:intergenic 25.0%
! ATCAATCAAGAAGTAATCTT+TGG + chr1_3:59199767-59199786 None:intergenic 25.0%
! ACATGACTGTTTATATAGAA+AGG - chr1_3:59199910-59199929 Msa0129290:intron 25.0%
! CATGACTGTTTATATAGAAA+GGG - chr1_3:59199911-59199930 Msa0129290:intron 25.0%
! GAAATCATCAATAATTGACT+CGG + chr1_3:59199958-59199977 None:intergenic 25.0%
! GTTAGGTGGTATTTAATTAT+TGG + chr1_3:59200457-59200476 None:intergenic 25.0%
! TCTTTGTAATTGTTGATGTT+AGG + chr1_3:59200474-59200493 None:intergenic 25.0%
! GTTAAAAAGTTGTGAAGTAA+AGG - chr1_3:59200683-59200702 Msa0129290:intron 25.0%
! CTATTATAAAAAAACTTGGC+CGG + chr1_3:59200829-59200848 None:intergenic 25.0%
! GTTAAAAAGTTGTGAAGTAA+AGG - chr1_3:59200683-59200702 Msa0129290:intron 25.0%
! AATTAAGTAGACTTAAGAGA+AGG - chr1_3:59201131-59201150 Msa0129290:intron 25.0%
! TGATATTTATAGGACTAACT+TGG + chr1_3:59201263-59201282 None:intergenic 25.0%
! ATTAAAGCAATTAAAGAAGC+TGG - chr1_3:59192964-59192983 Msa0129290:CDS 25.0%
! AGTTAGTAATAACTCTTTGA+TGG - chr1_3:59201894-59201913 Msa0129290:intron 25.0%
!! AAATTTTTCCCATCTGAATT+TGG - chr1_3:59193131-59193150 Msa0129290:intron 25.0%
!! AATTTTTCCCATCTGAATTT+GGG - chr1_3:59193132-59193151 Msa0129290:intron 25.0%
! AATTATACCTTACTCATTTC+AGG - chr1_3:59202282-59202301 Msa0129290:intron 25.0%
!!! TTTTGGGTCAAATAATTCTT+GGG + chr1_3:59193556-59193575 None:intergenic 25.0%
!!! ATTTTGGGTCAAATAATTCT+TGG + chr1_3:59193557-59193576 None:intergenic 25.0%
!!! ATTTTGTTTTCAGTTGCCAT+TGG + chr1_3:59192567-59192586 None:intergenic 30.0%
TTTCTAACCAAAGCATATGT+TGG + chr1_3:59192657-59192676 None:intergenic 30.0%
GTAGAATAACTCCTAAAGAT+TGG + chr1_3:59192758-59192777 None:intergenic 30.0%
TGATCATGAAACTCTTGTTA+AGG - chr1_3:59192873-59192892 Msa0129290:CDS 30.0%
TAGACTACTAATTGAAGATC+AGG - chr1_3:59192933-59192952 Msa0129290:CDS 30.0%
! GAGTTATTACTAAGAGTGTA+TGG + chr1_3:59193048-59193067 None:intergenic 30.0%
TTGCTCGTTATATTGAATGT+TGG - chr1_3:59193085-59193104 Msa0129290:intron 30.0%
TCTTCAAAAACTTGTCTAAC+TGG + chr1_3:59193188-59193207 None:intergenic 30.0%
TTTGGGTCAAATAATTCTTG+GGG + chr1_3:59193555-59193574 None:intergenic 30.0%
GAATTATTTGACCCAAAATG+AGG - chr1_3:59193558-59193577 Msa0129290:CDS 30.0%
! AAGAGCAATAACCTCATTTT+GGG + chr1_3:59193572-59193591 None:intergenic 30.0%
! AAAGAGCAATAACCTCATTT+TGG + chr1_3:59193573-59193592 None:intergenic 30.0%
AAAATGAGGTTATTGCTCTT+TGG - chr1_3:59193572-59193591 Msa0129290:CDS 30.0%
AAATGAGGTTATTGCTCTTT+GGG - chr1_3:59193573-59193592 Msa0129290:CDS 30.0%
TGAGAAAACTTATGTTTCAG+AGG - chr1_3:59193618-59193637 Msa0129290:CDS 30.0%
CAAGTTCTCAAAGATATTCA+AGG - chr1_3:59193643-59193662 Msa0129290:intron 30.0%
TTCAGAAGCTTCAATATCTT+TGG + chr1_3:59193984-59194003 None:intergenic 30.0%
ATTCAAATATTCATCAGCAG+TGG + chr1_3:59194029-59194048 None:intergenic 30.0%
! TTTGTCTAAGTTTGTTCTCA+CGG - chr1_3:59194052-59194071 Msa0129290:intron 30.0%
! AATTATTTAAAACCCACGTC+AGG - chr1_3:59194317-59194336 Msa0129290:intron 30.0%
ATTGCTTCATATGGTAAGAT+CGG + chr1_3:59194348-59194367 None:intergenic 30.0%
TTACCATATGAAGCAATGTT+TGG - chr1_3:59194351-59194370 Msa0129290:intron 30.0%
TACCATATGAAGCAATGTTT+GGG - chr1_3:59194352-59194371 Msa0129290:intron 30.0%
CAAGAAACAAAAGGAAAACT+AGG - chr1_3:59194518-59194537 Msa0129290:intron 30.0%
TCTCCATTAATCTCATAAAG+GGG + chr1_3:59194773-59194792 None:intergenic 30.0%
CTCTCCATTAATCTCATAAA+GGG + chr1_3:59194774-59194793 None:intergenic 30.0%
GAACTAACAACAATCTATCA+CGG + chr1_3:59194855-59194874 None:intergenic 30.0%
CAACAAAATGTCTTCTGAAT+GGG - chr1_3:59194878-59194897 Msa0129290:intron 30.0%
GTGCTTATTCTACAAAAAGT+GGG + chr1_3:59195110-59195129 None:intergenic 30.0%
TTATGGTCACACAACAAAAA+TGG + chr1_3:59195132-59195151 None:intergenic 30.0%
GTTGATGTAGTCTTCAATAT+TGG - chr1_3:59195194-59195213 Msa0129290:intron 30.0%
ATGTGTATGTTGTCCAATAT+TGG - chr1_3:59195239-59195258 Msa0129290:intron 30.0%
TTCTTAAAAATGGGTACACT+TGG + chr1_3:59195386-59195405 None:intergenic 30.0%
!!! CCCAAAGCTTATTTTTTGAT+TGG - chr1_3:59195511-59195530 Msa0129290:intron 30.0%
! TAGAAAACTTGTTTGGGATA+TGG + chr1_3:59195538-59195557 None:intergenic 30.0%
! GTCTTCTTAGAAAACTTGTT+TGG + chr1_3:59195545-59195564 None:intergenic 30.0%
!! TTTTCTAAGAAGACAAGTGT+TGG - chr1_3:59195551-59195570 Msa0129290:intron 30.0%
TACCTCTCCAGATAAAATTA+CGG - chr1_3:59195664-59195683 Msa0129290:intron 30.0%
! AAACTACCCGTAATTTTATC+TGG + chr1_3:59195674-59195693 None:intergenic 30.0%
! ATGCTATCACAAATGTTTTG+AGG - chr1_3:59195699-59195718 Msa0129290:intron 30.0%
GCATAAAAATATGCAAGGTT+CGG - chr1_3:59195890-59195909 Msa0129290:intron 30.0%
CATAAAAATATGCAAGGTTC+GGG - chr1_3:59195891-59195910 Msa0129290:intron 30.0%
ATAAAAATATGCAAGGTTCG+GGG - chr1_3:59195892-59195911 Msa0129290:intron 30.0%
ACCACACAAAAATTATCTGA+CGG - chr1_3:59195964-59195983 Msa0129290:intron 30.0%
GACAATGCATAAAATATGCA+AGG - chr1_3:59196102-59196121 Msa0129290:intron 30.0%
AATAAAAACTAAAACGGGTC+GGG + chr1_3:59196287-59196306 None:intergenic 30.0%
!! TTTTGGTTATAAATGTGACC+GGG - chr1_3:59196795-59196814 Msa0129290:intron 30.0%
TGTTCAGTTGACAAATCATT+GGG + chr1_3:59196882-59196901 None:intergenic 30.0%
TTGTTCAGTTGACAAATCAT+TGG + chr1_3:59196883-59196902 None:intergenic 30.0%
! ACAATGTCATTCTTTTGTAC+AGG - chr1_3:59196899-59196918 Msa0129290:intron 30.0%
TTATCTGACAAAGTAGCATA+GGG + chr1_3:59197025-59197044 None:intergenic 30.0%
TTCAACAGTGTATAATACCA+CGG + chr1_3:59197097-59197116 None:intergenic 30.0%
CAATTGTGATGTATATTGTG+AGG - chr1_3:59197178-59197197 Msa0129290:intron 30.0%
! ATGTATATTGTGAGGTTTTG+TGG - chr1_3:59197186-59197205 Msa0129290:intron 30.0%
!! TGTATATTGTGAGGTTTTGT+GGG - chr1_3:59197187-59197206 Msa0129290:intron 30.0%
GGCACATATTTAGAAATGTT+TGG - chr1_3:59197281-59197300 Msa0129290:intron 30.0%
CTAAAGGTAAACCTAAAATG+TGG + chr1_3:59197480-59197499 None:intergenic 30.0%
ATTTGGCTAATTTGGATTGA+AGG + chr1_3:59197551-59197570 None:intergenic 30.0%
! TAACGGTATCATCTTTTCAA+CGG + chr1_3:59197590-59197609 None:intergenic 30.0%
! TTCTAAAGAGGGTTTAAGAA+GGG - chr1_3:59197642-59197661 Msa0129290:intron 30.0%
TTTCTATAAAATAGGAGCCT+TGG - chr1_3:59198012-59198031 Msa0129290:intron 30.0%
TGATTAATACAAATTAGGGG+TGG - chr1_3:59198283-59198302 Msa0129290:intron 30.0%
!!! TTTTTTAGGCCCATAACTTT+TGG - chr1_3:59198442-59198461 Msa0129290:intron 30.0%
!!! TGGGTATTTTTTGTGCATTT+TGG - chr1_3:59198516-59198535 Msa0129290:intron 30.0%
!! TTCACTTTTCTCATTTCTTG+TGG - chr1_3:59198639-59198658 Msa0129290:intron 30.0%
ATCTTAGATGTTAAGAGTTG+AGG - chr1_3:59198698-59198717 Msa0129290:intron 30.0%
TCTTAGATGTTAAGAGTTGA+GGG - chr1_3:59198699-59198718 Msa0129290:intron 30.0%
!! TTTGCGTGAGATTTTTAGAT+TGG - chr1_3:59198724-59198743 Msa0129290:intron 30.0%
AAAACACGTTGTAAACATCT+TGG - chr1_3:59198747-59198766 Msa0129290:intron 30.0%
ATCTTGGAGAATGAAAATCT+TGG - chr1_3:59198763-59198782 Msa0129290:intron 30.0%
TCTTGATCATAGGAAGATAT+TGG - chr1_3:59198790-59198809 Msa0129290:intron 30.0%
CTTGATCATAGGAAGATATT+GGG - chr1_3:59198791-59198810 Msa0129290:intron 30.0%
TTGGGAAATGAGTAGAAATT+AGG - chr1_3:59198809-59198828 Msa0129290:intron 30.0%
! AGTAGAAATTAGGTTGTTCA+GGG - chr1_3:59198819-59198838 Msa0129290:intron 30.0%
! TCTAAGATGTAGGTTATTCT+TGG - chr1_3:59198919-59198938 Msa0129290:intron 30.0%
! GTTAGAATTTCAAGTCTCTT+TGG + chr1_3:59199267-59199286 None:intergenic 30.0%
CTCTTGTAATTGTTTGTCAA+TGG + chr1_3:59199478-59199497 None:intergenic 30.0%
AAAGATTTGTAACTATCCCA+AGG + chr1_3:59199561-59199580 None:intergenic 30.0%
!! TGTTGAAAAGTATTATCCCA+TGG - chr1_3:59199605-59199624 Msa0129290:intron 30.0%
! AGCATAAAAAAAGGAAGTGT+CGG + chr1_3:59199671-59199690 None:intergenic 30.0%
CAATCAGTGAGCATAAAAAA+AGG + chr1_3:59199680-59199699 None:intergenic 30.0%
TCAAGAATTATGCTCATGTT+TGG - chr1_3:59199726-59199745 Msa0129290:intron 30.0%
TGAAAAAGATCTTTCAGTTG+TGG + chr1_3:59199830-59199849 None:intergenic 30.0%
! TCTAAGTTGAGAAACAAGAT+GGG - chr1_3:59199867-59199886 Msa0129290:intron 30.0%
! ATTGATGATTTCAAGTCACT+CGG - chr1_3:59199966-59199985 Msa0129290:intron 30.0%
TTTGATGAACGAAACTGAAA+TGG - chr1_3:59200033-59200052 Msa0129290:intron 30.0%
ATACAACTCCAATACTTGAA+TGG - chr1_3:59200209-59200228 Msa0129290:intron 30.0%
! TTTTGTCTCCATTCAAGTAT+TGG + chr1_3:59200220-59200239 None:intergenic 30.0%
GATGTTAATCGGTATCTTTA+AGG + chr1_3:59200435-59200454 None:intergenic 30.0%
TTGTAATTGTTGATGTTAGG+TGG + chr1_3:59200471-59200490 None:intergenic 30.0%
CTAAGATATATTCTTGCTTC+CGG - chr1_3:59200807-59200826 Msa0129290:intron 30.0%
CTAAGATATATTCTTGCTTC+CGG - chr1_3:59200807-59200826 Msa0129290:intron 30.0%
AAACAATTCTGCTGAAAACT+TGG + chr1_3:59201051-59201070 None:intergenic 30.0%
AGTAGTAGATAGATTGAAGT+TGG - chr1_3:59201230-59201249 Msa0129290:intron 30.0%
!!! ATTTTGTTTTCAGTTGCCAT+TGG + chr1_3:59192567-59192586 None:intergenic 30.0%
TTTCTAACCAAAGCATATGT+TGG + chr1_3:59192657-59192676 None:intergenic 30.0%
ATTATCAATAAGCTCTTCCT+TGG + chr1_3:59201564-59201583 None:intergenic 30.0%
GTAGAATAACTCCTAAAGAT+TGG + chr1_3:59192758-59192777 None:intergenic 30.0%
! GAGTCAAAGACATATTGATT+AGG + chr1_3:59201672-59201691 None:intergenic 30.0%
TGATCATGAAACTCTTGTTA+AGG - chr1_3:59192873-59192892 Msa0129290:CDS 30.0%
GTACTCGTTATATTGAATAG+TGG - chr1_3:59201925-59201944 Msa0129290:intron 30.0%
TCTTCAAAAACTTGTCTAAC+TGG + chr1_3:59193188-59193207 None:intergenic 30.0%
TTTGGGTCAAATAATTCTTG+GGG + chr1_3:59193555-59193574 None:intergenic 30.0%
GAATTATTTGACCCAAAATG+AGG - chr1_3:59193558-59193577 Msa0129290:CDS 30.0%
! AAGAGCAATAACCTCATTTT+GGG + chr1_3:59193572-59193591 None:intergenic 30.0%
! AAAGAGCAATAACCTCATTT+TGG + chr1_3:59193573-59193592 None:intergenic 30.0%
AAAATGAGGTTATTGCTCTT+TGG - chr1_3:59193572-59193591 Msa0129290:CDS 30.0%
AAATGAGGTTATTGCTCTTT+GGG - chr1_3:59193573-59193592 Msa0129290:CDS 30.0%
TGAGAAAACTTATGTTTCAG+AGG - chr1_3:59193618-59193637 Msa0129290:CDS 30.0%
CAAGTTCTCAAAGATATTCA+AGG - chr1_3:59193643-59193662 Msa0129290:intron 30.0%
TTCAGAAGCTTCAATATCTT+TGG + chr1_3:59193984-59194003 None:intergenic 30.0%
ATTCAAATATTCATCAGCAG+TGG + chr1_3:59194029-59194048 None:intergenic 30.0%
GAAAACAAAATCCTCATCCT+AGG - chr1_3:59192576-59192595 Msa0129290:intron 35.0%
CATTGGAAGACACATAGTTT+GGG - chr1_3:59192611-59192630 Msa0129290:intron 35.0%
AGGAAATCCAACATATGCTT+TGG - chr1_3:59192647-59192666 Msa0129290:intron 35.0%
TTAGCAGCTGTAATAAGCTT+TGG + chr1_3:59192702-59192721 None:intergenic 35.0%
ATTGTCAATAAGCTCTTCCT+TGG + chr1_3:59192733-59192752 None:intergenic 35.0%
AATATGTCCTTGAATCTGCA+GGG - chr1_3:59192841-59192860 Msa0129290:intron 35.0%
TAAAGAAGCTGGAAACGTTA+AGG - chr1_3:59192975-59192994 Msa0129290:CDS 35.0%
AGCAAAGATCTAACTGTCAA+AGG + chr1_3:59193070-59193089 None:intergenic 35.0%
CTTCGGATTCAATTACTCTT+CGG + chr1_3:59193223-59193242 None:intergenic 35.0%
AAAGTTGTCATTCTTGGAGA+TGG - chr1_3:59193335-59193354 Msa0129290:CDS 35.0%
!! ACAGCTTTGTTCAATGTGTT+GGG + chr1_3:59193520-59193539 None:intergenic 35.0%
AATTCTTGGGGAGTCTAATA+TGG + chr1_3:59193543-59193562 None:intergenic 35.0%
ATTCCCTCATAACTACTTGT+TGG - chr1_3:59193904-59193923 Msa0129290:CDS 35.0%
ATGCCAACAAGTAGTTATGA+GGG + chr1_3:59193910-59193929 None:intergenic 35.0%
AATGCCAACAAGTAGTTATG+AGG + chr1_3:59193911-59193930 None:intergenic 35.0%
!!! TTTTGTTGTTGCTCGTGAAT+CGG - chr1_3:59194284-59194303 Msa0129290:intron 35.0%
TGATTTCATGGCAAAGTTAG+GGG + chr1_3:59194640-59194659 None:intergenic 35.0%
CTGATTTCATGGCAAAGTTA+GGG + chr1_3:59194641-59194660 None:intergenic 35.0%
!! TAACCAAAGTGCTGATTTCA+TGG + chr1_3:59194652-59194671 None:intergenic 35.0%
GTTTATCATACTCTCAGAGA+AGG + chr1_3:59194675-59194694 None:intergenic 35.0%
! ACTGCATATACATGATAGTG+CGG - chr1_3:59194741-59194760 Msa0129290:intron 35.0%
CTCCATTAATCTCATAAAGG+GGG + chr1_3:59194772-59194791 None:intergenic 35.0%
CCTCTCCATTAATCTCATAA+AGG + chr1_3:59194775-59194794 None:intergenic 35.0%
CCTTTATGAGATTAATGGAG+AGG - chr1_3:59194772-59194791 Msa0129290:intron 35.0%
TTATGAGATTAATGGAGAGG+AGG - chr1_3:59194775-59194794 Msa0129290:intron 35.0%
TATGAGATTAATGGAGAGGA+GGG - chr1_3:59194776-59194795 Msa0129290:intron 35.0%
!! AGATGATTTGGCTTGTTACT+CGG + chr1_3:59194805-59194824 None:intergenic 35.0%
TGACATGGGAATAGATGATT+TGG + chr1_3:59194817-59194836 None:intergenic 35.0%
! CCATTCAGAAGACATTTTGT+TGG + chr1_3:59194880-59194899 None:intergenic 35.0%
CCAACAAAATGTCTTCTGAA+TGG - chr1_3:59194877-59194896 Msa0129290:intron 35.0%
! AATGTTGATGGGAGTTTCAA+TGG + chr1_3:59194984-59195003 None:intergenic 35.0%
GTACCATTCTGAATGTTGAT+GGG + chr1_3:59194995-59195014 None:intergenic 35.0%
AGTACCATTCTGAATGTTGA+TGG + chr1_3:59194996-59195015 None:intergenic 35.0%
! CATTCAGAATGGTACTTTTC+CGG - chr1_3:59195000-59195019 Msa0129290:intron 35.0%
GGTGCTTATTCTACAAAAAG+TGG + chr1_3:59195111-59195130 None:intergenic 35.0%
ATGTAGTCTTCAATATTGGG+AGG - chr1_3:59195198-59195217 Msa0129290:intron 35.0%
! AGAGACGTGTTTTCCAATAT+TGG + chr1_3:59195255-59195274 None:intergenic 35.0%
AAACAACAAAGGTCTGCATT+TGG + chr1_3:59195643-59195662 None:intergenic 35.0%
ACCTCTCCAGATAAAATTAC+GGG - chr1_3:59195665-59195684 Msa0129290:intron 35.0%
!!! TCATTTTTTTTAGTGGTGGC+CGG + chr1_3:59195926-59195945 None:intergenic 35.0%
! ACCGTCAGATAATTTTTGTG+TGG + chr1_3:59195968-59195987 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG - chr1_3:59196107-59196126 Msa0129290:intron 35.0%
GGGTTAGGCTATATAATATG+CGG + chr1_3:59196241-59196260 None:intergenic 35.0%
TTCTTATAAATGTGACCGGA+GGG + chr1_3:59196681-59196700 None:intergenic 35.0%
TTTCTTATAAATGTGACCGG+AGG + chr1_3:59196682-59196701 None:intergenic 35.0%
! TGCTCTTATGCAAAGTTTTG+GGG + chr1_3:59196966-59196985 None:intergenic 35.0%
! GTGCTCTTATGCAAAGTTTT+GGG + chr1_3:59196967-59196986 None:intergenic 35.0%
!! TTGCATAAGAGCACCATTAT+CGG - chr1_3:59196973-59196992 Msa0129290:intron 35.0%
CTTATCTGACAAAGTAGCAT+AGG + chr1_3:59197026-59197045 None:intergenic 35.0%
!!! GCCCGTTTTTAAGATTTTGA+TGG + chr1_3:59197504-59197523 None:intergenic 35.0%
! TCATCTTTTCAACGGCATAA+TGG + chr1_3:59197582-59197601 None:intergenic 35.0%
GTTGAAAAGATGATACCGTT+AGG - chr1_3:59197589-59197608 Msa0129290:intron 35.0%
! CTTCTAAAGAGGGTTTAAGA+AGG - chr1_3:59197641-59197660 Msa0129290:intron 35.0%
! TACGTATTTGGTTCCTTTCA+CGG - chr1_3:59197824-59197843 Msa0129290:intron 35.0%
GTTTGATGTAATTCCGTGAA+AGG + chr1_3:59197840-59197859 None:intergenic 35.0%
CAGGGTCGTTTCTATAAAAT+AGG - chr1_3:59198004-59198023 Msa0129290:intron 35.0%
!!! GAGTTTTTTTTCCTAGACTC+TGG + chr1_3:59198344-59198363 None:intergenic 35.0%
ATAGATGTTGTACCTGATGT+CGG + chr1_3:59198615-59198634 None:intergenic 35.0%
! GAGTAGAAATTAGGTTGTTC+AGG - chr1_3:59198818-59198837 Msa0129290:intron 35.0%
!!! GTTGCTCTTTTCTAAGATGT+AGG - chr1_3:59198909-59198928 Msa0129290:intron 35.0%
CAACAAGATAAAGTGAGTAG+AGG + chr1_3:59198967-59198986 None:intergenic 35.0%
TGTTGTTCTTGCTTTGATTG+TGG - chr1_3:59198982-59199001 Msa0129290:intron 35.0%
CTTCACATACATGTTCTTGT+TGG - chr1_3:59199090-59199109 Msa0129290:intron 35.0%
TTGCTGAATGACAATCATTG+AGG + chr1_3:59199376-59199395 None:intergenic 35.0%
TGTCATTCAGCAACAAGATT+TGG - chr1_3:59199383-59199402 Msa0129290:intron 35.0%
GTCATTCAGCAACAAGATTT+GGG - chr1_3:59199384-59199403 Msa0129290:intron 35.0%
TCTTGATCACTGAAATCCAT+GGG + chr1_3:59199624-59199643 None:intergenic 35.0%
! GTCTAAGTTGAGAAACAAGA+TGG - chr1_3:59199866-59199885 Msa0129290:intron 35.0%
! TTGATGATTTCAAGTCACTC+GGG - chr1_3:59199967-59199986 Msa0129290:intron 35.0%
GAGCCAGACAAAAAATTATG+GGG + chr1_3:59200118-59200137 None:intergenic 35.0%
GGAGCCAGACAAAAAATTAT+GGG + chr1_3:59200119-59200138 None:intergenic 35.0%
GCTATGTTCATCTACATTGA+CGG + chr1_3:59200140-59200159 None:intergenic 35.0%
TGGAGACAAAATCAAAGACA+AGG - chr1_3:59200229-59200248 Msa0129290:intron 35.0%
GGAGACAAAATCAAAGACAA+GGG - chr1_3:59200230-59200249 Msa0129290:intron 35.0%
CGTTTGCAATGAGTTTCAAT+AGG + chr1_3:59200505-59200524 None:intergenic 35.0%
AGTAGATAGATTGAAGTTGG+TGG - chr1_3:59201233-59201252 Msa0129290:intron 35.0%
GAAAACAAAATCCTCATCCT+AGG - chr1_3:59192576-59192595 Msa0129290:intron 35.0%
CATTGGAAGACACATAGTTT+GGG - chr1_3:59192611-59192630 Msa0129290:intron 35.0%
AGGAAATCCAACATATGCTT+TGG - chr1_3:59192647-59192666 Msa0129290:intron 35.0%
TTAGCAGCTGTAATAAGCTT+TGG + chr1_3:59192702-59192721 None:intergenic 35.0%
AATATGTCTTTGACTCTGCA+GGG - chr1_3:59201676-59201695 Msa0129290:intron 35.0%
TAGACTACTAATTGAGGATC+AGG - chr1_3:59201768-59201787 Msa0129290:CDS 35.0%
TAAAGAAGCTGGAAACGTTA+AGG - chr1_3:59192975-59192994 Msa0129290:CDS 35.0%
CAAGTTACGTAAGAAGTAAC+CGG + chr1_3:59193282-59193301 None:intergenic 35.0%
AAAGTTGTCATTCTTGGAGA+TGG - chr1_3:59193335-59193354 Msa0129290:CDS 35.0%
ATATGCTCCTGAAATGAGTA+AGG + chr1_3:59202292-59202311 None:intergenic 35.0%
!! ACAGCTTTGTTCAATGTGTT+GGG + chr1_3:59193520-59193539 None:intergenic 35.0%
AATTCTTGGGGAGTCTAATA+TGG + chr1_3:59193543-59193562 None:intergenic 35.0%
ATTCCCTCATAACTACTTGT+TGG - chr1_3:59193904-59193923 Msa0129290:CDS 35.0%
ATGCCAACAAGTAGTTATGA+GGG + chr1_3:59193910-59193929 None:intergenic 35.0%
AATGCCAACAAGTAGTTATG+AGG + chr1_3:59193911-59193930 None:intergenic 35.0%
CCAAACTATGTGTCTTCCAA+TGG + chr1_3:59192613-59192632 None:intergenic 40.0%
CCATTGGAAGACACATAGTT+TGG - chr1_3:59192610-59192629 Msa0129290:intron 40.0%
GTTTGGGCAAGTATTAAAGC+AGG - chr1_3:59192627-59192646 Msa0129290:intron 40.0%
GCTTTGGTTAGAAAAACACC+TGG - chr1_3:59192663-59192682 Msa0129290:intron 40.0%
!! TTTGGCTTGTTAACATTGCC+AGG + chr1_3:59192684-59192703 None:intergenic 40.0%
ATAAGCTCTTCCTTGGTTTC+AGG + chr1_3:59192726-59192745 None:intergenic 40.0%
CAATATGTCCTTGAATCTGC+AGG - chr1_3:59192840-59192859 Msa0129290:intron 40.0%
TATATCACCCTGCAGATTCA+AGG + chr1_3:59192851-59192870 None:intergenic 40.0%
! AACTTGTCTAACTGGCTCAA+CGG + chr1_3:59193180-59193199 None:intergenic 40.0%
CGAAGAGTAATTGAATCCGA+AGG - chr1_3:59193221-59193240 Msa0129290:CDS 40.0%
GTAAGTGTAAGGAACTCCTT+CGG + chr1_3:59193240-59193259 None:intergenic 40.0%
TGGCAACAAAGGTAAGTGTA+AGG + chr1_3:59193251-59193270 None:intergenic 40.0%
ACGTAAGAAGTAACCCGTAA+AGG + chr1_3:59193276-59193295 None:intergenic 40.0%
GGGTTACTTCTTACGTAACT+TGG - chr1_3:59193280-59193299 Msa0129290:CDS 40.0%
CTTGGAGATGGAAATGTGAA+AGG - chr1_3:59193347-59193366 Msa0129290:CDS 40.0%
TTCAGGAGCTTATGTAACTG+AGG - chr1_3:59193456-59193475 Msa0129290:intron 40.0%
TTATGTAACTGAGGCTGATG+TGG - chr1_3:59193465-59193484 Msa0129290:intron 40.0%
TATGTAACTGAGGCTGATGT+GGG - chr1_3:59193466-59193485 Msa0129290:intron 40.0%
!! GACAGCTTTGTTCAATGTGT+TGG + chr1_3:59193521-59193540 None:intergenic 40.0%
! GCTCTTTGGGAGAAAAAGAT+TGG - chr1_3:59193586-59193605 Msa0129290:CDS 40.0%
ATAGCCGCACAAATATCTGA+CGG - chr1_3:59193772-59193791 Msa0129290:CDS 40.0%
TACACCGTCAGATATTTGTG+CGG + chr1_3:59193779-59193798 None:intergenic 40.0%
GAAGCTTCAATATCTTTGGC+TGG + chr1_3:59193980-59193999 None:intergenic 40.0%
! ATTTAAAACCCACGTCAGGA+TGG - chr1_3:59194321-59194340 Msa0129290:intron 40.0%
CACCCAAACATTGCTTCATA+TGG + chr1_3:59194357-59194376 None:intergenic 40.0%
CATATGAAGCAATGTTTGGG+TGG - chr1_3:59194355-59194374 Msa0129290:intron 40.0%
AAAAGGAAAACTAGGCCCTA+GGG - chr1_3:59194526-59194545 Msa0129290:intron 40.0%
! GCTGATTTCATGGCAAAGTT+AGG + chr1_3:59194642-59194661 None:intergenic 40.0%
TTGCCATGAAATCAGCACTT+TGG - chr1_3:59194646-59194665 Msa0129290:intron 40.0%
GTCCCCCTTTATGAGATTAA+TGG - chr1_3:59194767-59194786 Msa0129290:intron 40.0%
! GGCATTTTTCGCAATAATGG+GGG + chr1_3:59194936-59194955 None:intergenic 40.0%
! CGGCATTTTTCGCAATAATG+GGG + chr1_3:59194937-59194956 None:intergenic 40.0%
! GCGGCATTTTTCGCAATAAT+GGG + chr1_3:59194938-59194957 None:intergenic 40.0%
ACTCCCATCAACATTCAGAA+TGG - chr1_3:59194989-59195008 Msa0129290:intron 40.0%
GATTTGGAAGTTGAAAGCTC+CGG + chr1_3:59195022-59195041 None:intergenic 40.0%
ATGACGGTAATCAGATTGCT+TGG + chr1_3:59195050-59195069 None:intergenic 40.0%
AGCAATCTGATTACCGTCAT+CGG - chr1_3:59195050-59195069 Msa0129290:intron 40.0%
TCAGAATCTCAAACCGATGA+CGG + chr1_3:59195066-59195085 None:intergenic 40.0%
!! ATCGGTTTGAGATTCTGAGA+GGG - chr1_3:59195068-59195087 Msa0129290:intron 40.0%
CTACAAAAAGTGGGTACACT+TGG + chr1_3:59195101-59195120 None:intergenic 40.0%
CCATTGAAGACGCTTTCTTA+TGG + chr1_3:59195149-59195168 None:intergenic 40.0%
!! CCATAAGAAAGCGTCTTCAA+TGG - chr1_3:59195146-59195165 Msa0129290:intron 40.0%
!! TAAGAAAGCGTCTTCAATGG+AGG - chr1_3:59195149-59195168 Msa0129290:intron 40.0%
AGTCTTCAATATTGGGAGGA+AGG - chr1_3:59195202-59195221 Msa0129290:intron 40.0%
AAAACACGTCTCTGACTGAA+TGG - chr1_3:59195262-59195281 Msa0129290:intron 40.0%
!! GGATAATGGATGACCAAGAT+GGG - chr1_3:59195418-59195437 Msa0129290:intron 40.0%
!! GATAATGGATGACCAAGATG+GGG - chr1_3:59195419-59195438 Msa0129290:intron 40.0%
CTCTCAAACAAATACTCAGG+TGG + chr1_3:59195483-59195502 None:intergenic 40.0%
CACCTGAGTATTTGTTTGAG+AGG - chr1_3:59195481-59195500 Msa0129290:intron 40.0%
CTCCTCTCAAACAAATACTC+AGG + chr1_3:59195486-59195505 None:intergenic 40.0%
CTGAGTATTTGTTTGAGAGG+AGG - chr1_3:59195484-59195503 Msa0129290:intron 40.0%
CTTAGGTATTAGACCAGCTA+GGG + chr1_3:59195580-59195599 None:intergenic 40.0%
! TGGAGAGGTACAAACAACAA+AGG + chr1_3:59195654-59195673 None:intergenic 40.0%
! ACCCGTAATTTTATCTGGAG+AGG + chr1_3:59195669-59195688 None:intergenic 40.0%
!!! ATTTTTTTTAGTGGTGGCCG+GGG + chr1_3:59195924-59195943 None:intergenic 40.0%
!!! CATTTTTTTTAGTGGTGGCC+GGG + chr1_3:59195925-59195944 None:intergenic 40.0%
CGGGTATCTATTACTTGTAG+AGG - chr1_3:59196037-59196056 Msa0129290:intron 40.0%
!!! GTCAGTCCATTTTTTTGTGG+TGG + chr1_3:59196147-59196166 None:intergenic 40.0%
ATTTATGTACTCGGACCTCA+TGG + chr1_3:59196185-59196204 None:intergenic 40.0%
ATGAGGTCCGAGTACATAAA+TGG - chr1_3:59196184-59196203 Msa0129290:intron 40.0%
TGAGGTCCGAGTACATAAAT+GGG - chr1_3:59196185-59196204 Msa0129290:intron 40.0%
GTCTGACCCATTTATGTACT+CGG + chr1_3:59196194-59196213 None:intergenic 40.0%
TGACCCAACCCATTTGTAAT+TGG - chr1_3:59196214-59196233 Msa0129290:intron 40.0%
GACCCAACCCATTTGTAATT+GGG - chr1_3:59196215-59196234 Msa0129290:intron 40.0%
TATGCGGCCCAATTACAAAT+GGG + chr1_3:59196225-59196244 None:intergenic 40.0%
ATATGCGGCCCAATTACAAA+TGG + chr1_3:59196226-59196245 None:intergenic 40.0%
TAGCCTAACCCGATTTATGT+TGG - chr1_3:59196250-59196269 Msa0129290:intron 40.0%
TGACCAACATAAATCGGGTT+AGG + chr1_3:59196256-59196275 None:intergenic 40.0%
AACCCGATTTATGTTGGTCA+TGG - chr1_3:59196256-59196275 Msa0129290:intron 40.0%
GTCCATGACCAACATAAATC+GGG + chr1_3:59196261-59196280 None:intergenic 40.0%
GGTCCATGACCAACATAAAT+CGG + chr1_3:59196262-59196281 None:intergenic 40.0%
! ACCGGAGGGAGTATAAAATT+GGG + chr1_3:59196667-59196686 None:intergenic 40.0%
AATCCTAACTCATACTCTCC+CGG + chr1_3:59196816-59196835 None:intergenic 40.0%
! CATTTTGGGCTGCCTTTTTT+AGG - chr1_3:59196851-59196870 Msa0129290:intron 40.0%
AGTTGACAAATCATTGGGTC+CGG + chr1_3:59196877-59196896 None:intergenic 40.0%
!! GCTCTTATGCAAAGTTTTGG+GGG + chr1_3:59196965-59196984 None:intergenic 40.0%
! GGTGCTCTTATGCAAAGTTT+TGG + chr1_3:59196968-59196987 None:intergenic 40.0%
CTCACAATGTCAACCGATAA+TGG + chr1_3:59196989-59197008 None:intergenic 40.0%
TAATTTGGATTGAAGGTCGC+CGG + chr1_3:59197544-59197563 None:intergenic 40.0%
! TTAAGAAGGGCATGGATTCT+AGG - chr1_3:59197655-59197674 Msa0129290:intron 40.0%
! AGGAGCACAATCTTTGCATT+TGG - chr1_3:59197675-59197694 Msa0129290:intron 40.0%
GGAGCACAATCTTTGCATTT+GGG - chr1_3:59197676-59197695 Msa0129290:intron 40.0%
GTATCTTGTGTTTGCTTCAG+TGG - chr1_3:59197698-59197717 Msa0129290:intron 40.0%
TGGACACTAGACTTCATCTA+AGG - chr1_3:59197718-59197737 Msa0129290:intron 40.0%
TTGTTATCGTGCAATACGCA+AGG - chr1_3:59197948-59197967 Msa0129290:intron 40.0%
GAGAGGTGAAATTTGTCGTT+TGG - chr1_3:59198159-59198178 Msa0129290:intron 40.0%
CACCAGACTTATGTTCAGAA+AGG - chr1_3:59198314-59198333 Msa0129290:intron 40.0%
CTCCTTTCTGAACATAAGTC+TGG + chr1_3:59198319-59198338 None:intergenic 40.0%
! TTTAGGCCCATAACTTTTGG+AGG - chr1_3:59198445-59198464 Msa0129290:intron 40.0%
TCTTGGAGTCTCTTGATCAT+AGG - chr1_3:59198780-59198799 Msa0129290:intron 40.0%
TAAGCAGTGTTGCGTGAATT+TGG - chr1_3:59199044-59199063 Msa0129290:intron 40.0%
AAATTGCAACGGGCCAAATA+TGG + chr1_3:59199161-59199180 None:intergenic 40.0%
CAATGGACATAGTAGGCATA+AGG + chr1_3:59199343-59199362 None:intergenic 40.0%
GGAATCTCAATGGACATAGT+AGG + chr1_3:59199350-59199369 None:intergenic 40.0%
ATTGAGGTCAGGAATCTCAA+TGG + chr1_3:59199360-59199379 None:intergenic 40.0%
GAATGACAATCATTGAGGTC+AGG + chr1_3:59199371-59199390 None:intergenic 40.0%
TTGTGACCTGATTCTCTTCA+AGG + chr1_3:59199418-59199437 None:intergenic 40.0%
TAAGTTGTGCTTTGTCTCCT+TGG - chr1_3:59199541-59199560 Msa0129290:intron 40.0%
AAGTTGTGCTTTGTCTCCTT+GGG - chr1_3:59199542-59199561 Msa0129290:intron 40.0%
CTCTTGATCACTGAAATCCA+TGG + chr1_3:59199625-59199644 None:intergenic 40.0%
AAACCGGAAGAGTCATAACA+AGG + chr1_3:59199801-59199820 None:intergenic 40.0%
TCAGTTGTGGAAGTAGAAAC+CGG + chr1_3:59199817-59199836 None:intergenic 40.0%
TTGAGAAACAAGATGGGACA+TGG - chr1_3:59199873-59199892 Msa0129290:intron 40.0%
TGAGAAACAAGATGGGACAT+GGG - chr1_3:59199874-59199893 Msa0129290:intron 40.0%
CCAGACAAAAAATTATGGGG+TGG + chr1_3:59200115-59200134 None:intergenic 40.0%
!!! CCACCCCATAATTTTTTGTC+TGG - chr1_3:59200112-59200131 Msa0129290:intron 40.0%
CGGAGCCAGACAAAAAATTA+TGG + chr1_3:59200120-59200139 None:intergenic 40.0%
TTCCTTAACTAGTGCTCTGA+GGG + chr1_3:59200303-59200322 None:intergenic 40.0%
TTTCCTTAACTAGTGCTCTG+AGG + chr1_3:59200304-59200323 None:intergenic 40.0%
TGAAGACGAATTCAACATGC+AGG - chr1_3:59200645-59200664 Msa0129290:intron 40.0%
ACGAATTCAACATGCAGGTT+GGG - chr1_3:59200650-59200669 Msa0129290:intron 40.0%
TGAAGACGAATTCAACATGC+AGG - chr1_3:59200645-59200664 Msa0129290:intron 40.0%
ACGAATTCAACATGCAGGTT+GGG - chr1_3:59200650-59200669 Msa0129290:intron 40.0%
AATTCTGCTGAAAACTTGGC+CGG + chr1_3:59201047-59201066 None:intergenic 40.0%
TCACACACTCACTACTACTT+TGG - chr1_3:59201302-59201321 Msa0129290:intron 40.0%
CCAAACTATGTGTCTTCCAA+TGG + chr1_3:59192613-59192632 None:intergenic 40.0%
CCATTGGAAGACACATAGTT+TGG - chr1_3:59192610-59192629 Msa0129290:intron 40.0%
GTTTGGGCAAGTATTAAAGC+AGG - chr1_3:59192627-59192646 Msa0129290:intron 40.0%
GCTTTGGTTAGAAAAACACC+TGG - chr1_3:59192663-59192682 Msa0129290:intron 40.0%
!! TTTGGCTTGTTAACATTGCC+AGG + chr1_3:59192684-59192703 None:intergenic 40.0%
ATAAGCTCTTCCTTGGTTTC+AGG + chr1_3:59192726-59192745 None:intergenic 40.0%
CAATATGTCTTTGACTCTGC+AGG - chr1_3:59201675-59201694 Msa0129290:intron 40.0%
TGCTGGTAGACTACTAATTG+AGG - chr1_3:59192927-59192946 Msa0129290:CDS 40.0%
! AACTTGTCTAACTGGCTCAA+CGG + chr1_3:59193180-59193199 None:intergenic 40.0%
CTTCGGCTTCAATTACTCTT+CGG + chr1_3:59202063-59202082 None:intergenic 40.0%
GTAAGTGTAAGGAACTCCTT+CGG + chr1_3:59193240-59193259 None:intergenic 40.0%
TGGCAACAAAGGTAAGTGTA+AGG + chr1_3:59193251-59193270 None:intergenic 40.0%
ACGTAAGAAGTAACCGGTAA+AGG + chr1_3:59202116-59202135 None:intergenic 40.0%
CGGTTACTTCTTACGTAACT+TGG - chr1_3:59202120-59202139 Msa0129290:CDS 40.0%
CTTGGAGATGGAAATGTGAA+AGG - chr1_3:59193347-59193366 Msa0129290:CDS 40.0%
! TTCAGGAGCATATGTAACTG+AGG - chr1_3:59202299-59202318 Msa0129290:intron 40.0%
ATATGTAACTGAGGCTGATG+TGG - chr1_3:59202308-59202327 Msa0129290:intron 40.0%
TATGTAACTGAGGCTGATGT+GGG - chr1_3:59193466-59193485 Msa0129290:intron 40.0%
!! GACAGCTTTGTTCAATGTGT+TGG + chr1_3:59193521-59193540 None:intergenic 40.0%
! GCTCTTTGGGAGAAAAAGAT+TGG - chr1_3:59193586-59193605 Msa0129290:CDS 40.0%
ATAGCCGCACAAATATCTGA+CGG - chr1_3:59193772-59193791 Msa0129290:CDS 40.0%
TACACCGTCAGATATTTGTG+CGG + chr1_3:59193779-59193798 None:intergenic 40.0%
GAAGCTTCAATATCTTTGGC+TGG + chr1_3:59193980-59193999 None:intergenic 40.0%
AGCTGCTAATCCTGAAACCA+AGG - chr1_3:59192713-59192732 Msa0129290:intron 45.0%
GATATTGTGATCTGTGCTGC+TGG - chr1_3:59192910-59192929 Msa0129290:CDS 45.0%
CGTCTAGCCCAAATTCAGAT+GGG + chr1_3:59193142-59193161 None:intergenic 45.0%
ACGTCTAGCCCAAATTCAGA+TGG + chr1_3:59193143-59193162 None:intergenic 45.0%
! ATCTGAATTTGGGCTAGACG+TGG - chr1_3:59193142-59193161 Msa0129290:intron 45.0%
AGAATGACAACTTTGTCCCG+AGG + chr1_3:59193329-59193348 None:intergenic 45.0%
CGGGACAAAGTTGTCATTCT+TGG - chr1_3:59193329-59193348 Msa0129290:CDS 45.0%
! GGGATCATTTGCTGCTCTAA+TGG + chr1_3:59193500-59193519 None:intergenic 45.0%
GGTGTATGTCACATCAGGAT+AGG + chr1_3:59194008-59194027 None:intergenic 45.0%
CAAAAGGAAAACTAGGCCCT+AGG - chr1_3:59194525-59194544 Msa0129290:intron 45.0%
GTGGATGACGAAATCAGCAT+TGG - chr1_3:59194608-59194627 Msa0129290:intron 45.0%
! GACGAAATCAGCATTGGATG+CGG - chr1_3:59194614-59194633 Msa0129290:intron 45.0%
! TAATGGGGGTCTTTTCCTCT+CGG + chr1_3:59194922-59194941 None:intergenic 45.0%
! GGCGGCATTTTTCGCAATAA+TGG + chr1_3:59194939-59194958 None:intergenic 45.0%
AGATTGCTTGGTCGTGGATT+TGG + chr1_3:59195038-59195057 None:intergenic 45.0%
GTAATCAGATTGCTTGGTCG+TGG + chr1_3:59195044-59195063 None:intergenic 45.0%
!! CATCGGTTTGAGATTCTGAG+AGG - chr1_3:59195067-59195086 Msa0129290:intron 45.0%
!! TGGGAACAAGAGTACCAAGA+AGG - chr1_3:59195307-59195326 Msa0129290:intron 45.0%
ACTCCAGTTGCTGAACCAAA+AGG - chr1_3:59195338-59195357 Msa0129290:intron 45.0%
AAATGGGTACACTTGGAGAG+CGG + chr1_3:59195379-59195398 None:intergenic 45.0%
!! CGGATAATGGATGACCAAGA+TGG - chr1_3:59195417-59195436 Msa0129290:intron 45.0%
GCTTAGGTATTAGACCAGCT+AGG + chr1_3:59195581-59195600 None:intergenic 45.0%
GTCTAATACCTAAGCCTCCA+AGG - chr1_3:59195586-59195605 Msa0129290:intron 45.0%
GGAAAAAGATTGCTAGACCG+AGG + chr1_3:59195614-59195633 None:intergenic 45.0%
AAGGTCTGCATTTGGTTAGC+TGG + chr1_3:59195635-59195654 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr1_3:59195862-59195881 Msa0129290:intron 45.0%
!!! TCCATTTTTTTGTGGTGGCC+GGG + chr1_3:59196142-59196161 None:intergenic 45.0%
!!! GTCCATTTTTTTGTGGTGGC+CGG + chr1_3:59196143-59196162 None:intergenic 45.0%
!!! CGGGTCAGTCCATTTTTTTG+TGG + chr1_3:59196150-59196169 None:intergenic 45.0%
! GGCCCAATTACAAATGGGTT+GGG + chr1_3:59196220-59196239 None:intergenic 45.0%
AAAACTAAAACGGGTCGGGT+TGG + chr1_3:59196283-59196302 None:intergenic 45.0%
TAACCTATTGGGTTTCGGAC+CGG + chr1_3:59196632-59196651 None:intergenic 45.0%
CGGGTTAACCTATTGGGTTT+CGG + chr1_3:59196637-59196656 None:intergenic 45.0%
CGAAACCCAATAGGTTAACC+CGG - chr1_3:59196635-59196654 Msa0129290:intron 45.0%
! CCGGAGGGAGTATAAAATTG+GGG + chr1_3:59196666-59196685 None:intergenic 45.0%
! CCCCAATTTTATACTCCCTC+CGG - chr1_3:59196663-59196682 Msa0129290:intron 45.0%
! GACCGGAGGGAGTATAAAAT+TGG + chr1_3:59196668-59196687 None:intergenic 45.0%
AAGAGGGTTTAAGAAGGGCA+TGG - chr1_3:59197647-59197666 Msa0129290:intron 45.0%
TGCAATACGCAAGGCATATC+CGG - chr1_3:59197957-59197976 Msa0129290:intron 45.0%
ATTTGTCACTCCTCCGTTGT+GGG - chr1_3:59198182-59198201 Msa0129290:intron 45.0%
! CGTTTTCCTCTTTCCCACAA+CGG + chr1_3:59198198-59198217 None:intergenic 45.0%
GTGGGAAAGAGGAAAACGAA+TGG - chr1_3:59198200-59198219 Msa0129290:intron 45.0%
AGAAAGGAGAACCAGAGTCT+AGG - chr1_3:59198330-59198349 Msa0129290:intron 45.0%
CAGGTTTAGTGAGCAAGCAA+TGG - chr1_3:59199506-59199525 Msa0129290:intron 45.0%
TGCTCATGTTTGGTTGCAAC+TGG - chr1_3:59199736-59199755 Msa0129290:intron 45.0%
GACGAATTCAACATGCAGGT+TGG - chr1_3:59200649-59200668 Msa0129290:intron 45.0%
GACGAATTCAACATGCAGGT+TGG - chr1_3:59200649-59200668 Msa0129290:intron 45.0%
!! AGGCGTCAATTTTGACCAAC+AGG - chr1_3:59201151-59201170 Msa0129290:intron 45.0%
!! GGCGTCAATTTTGACCAACA+GGG - chr1_3:59201152-59201171 Msa0129290:intron 45.0%
TGAAATAGAAGCAGCCCTGT+TGG + chr1_3:59201169-59201188 None:intergenic 45.0%
AGCTGCTAATCCTGAAACCA+AGG - chr1_3:59192713-59192732 Msa0129290:intron 45.0%
CGTCTAGCCCAAATTCAGAT+GGG + chr1_3:59193142-59193161 None:intergenic 45.0%
ACGTCTAGCCCAAATTCAGA+TGG + chr1_3:59193143-59193162 None:intergenic 45.0%
! ATCTGAATTTGGGCTAGACG+TGG - chr1_3:59193142-59193161 Msa0129290:intron 45.0%
CGAAGAGTAATTGAAGCCGA+AGG - chr1_3:59202061-59202080 Msa0129290:CDS 45.0%
AGAATGACAACTTTGTCCCG+AGG + chr1_3:59193329-59193348 None:intergenic 45.0%
CGGGACAAAGTTGTCATTCT+TGG - chr1_3:59193329-59193348 Msa0129290:CDS 45.0%
! GGGATCATTTGCTGCTCTAA+TGG + chr1_3:59193500-59193519 None:intergenic 45.0%
GGTGTATGTCACATCAGGAT+AGG + chr1_3:59194008-59194027 None:intergenic 45.0%
!!! AATTTTATTTTTGTATTTTA+GGG + chr1_3:59197241-59197260 None:intergenic 5.0%
!!! AAATTTTATTTTTGTATTTT+AGG + chr1_3:59197242-59197261 None:intergenic 5.0%
!! AAATAATTTAATAAAAACAT+CGG + chr1_3:59197369-59197388 None:intergenic 5.0%
!!! TTTTTTACATTTTTTAATAT+TGG + chr1_3:59200362-59200381 None:intergenic 5.0%
!! TAATAATAATTAGTATAAAT+CGG - chr1_3:59200763-59200782 Msa0129290:intron 5.0%
!! TAATAATAATTAGTATAAAT+CGG - chr1_3:59200763-59200782 Msa0129290:intron 5.0%
ATCCTCATCCTAGGACCAAC+AGG - chr1_3:59192585-59192604 Msa0129290:intron 50.0%
TGTCTTCCAATGGCTCCTGT+TGG + chr1_3:59192603-59192622 None:intergenic 50.0%
CCTTTGTTGCCACGCCTTTA+CGG - chr1_3:59193259-59193278 Msa0129290:CDS 50.0%
CTTTGTTGCCACGCCTTTAC+GGG - chr1_3:59193260-59193279 Msa0129290:CDS 50.0%
AGAAGTAACCCGTAAAGGCG+TGG + chr1_3:59193271-59193290 None:intergenic 50.0%
ATGACAACTTTGTCCCGAGG+AGG + chr1_3:59193326-59193345 None:intergenic 50.0%
GCAGTGGTGTATGTCACATC+AGG + chr1_3:59194013-59194032 None:intergenic 50.0%
! AAGACCTGCTCTTGCTGCTT+CGG + chr1_3:59194575-59194594 None:intergenic 50.0%
TTGCGCATGGCTGTTGACAT+GGG + chr1_3:59194831-59194850 None:intergenic 50.0%
AATCTATCACGGCTTGCGCA+TGG + chr1_3:59194844-59194863 None:intergenic 50.0%
TCATACCTGAGAAAGCCGAG+AGG - chr1_3:59194904-59194923 Msa0129290:intron 50.0%
! CTTTTCCTCTCGGCTTTCTC+AGG + chr1_3:59194912-59194931 None:intergenic 50.0%
AAATGCCGCCAAAACCAGTG+CGG - chr1_3:59194949-59194968 Msa0129290:intron 50.0%
! AGAGTACCAAGAAGGCCATG+TGG - chr1_3:59195315-59195334 Msa0129290:intron 50.0%
TTCAGCAACTGGAGTCCACA+TGG + chr1_3:59195333-59195352 None:intergenic 50.0%
!!! CGTCCTTTTGGTTCAGCAAC+TGG + chr1_3:59195344-59195363 None:intergenic 50.0%
! GATCGGGAACTTCGTCCTTT+TGG + chr1_3:59195356-59195375 None:intergenic 50.0%
AATGGGTACACTTGGAGAGC+GGG + chr1_3:59195378-59195397 None:intergenic 50.0%
TGACCAAGATGGGGAACTGT+TGG - chr1_3:59195428-59195447 Msa0129290:intron 50.0%
GACCAAGATGGGGAACTGTT+GGG - chr1_3:59195429-59195448 Msa0129290:intron 50.0%
ACCAAGATGGGGAACTGTTG+GGG - chr1_3:59195430-59195449 Msa0129290:intron 50.0%
CCAACTGAGCTAAGCTCACA+AGG + chr1_3:59195860-59195879 None:intergenic 50.0%
CCTTGTGAGCTTAGCTCAGT+TGG - chr1_3:59195857-59195876 Msa0129290:intron 50.0%
!!! CCATTTTTTTGTGGTGGCCG+GGG + chr1_3:59196141-59196160 None:intergenic 50.0%
CGGCCCAATTACAAATGGGT+TGG + chr1_3:59196221-59196240 None:intergenic 50.0%
TATAAAATTGGGGCCGAGCC+GGG + chr1_3:59196656-59196675 None:intergenic 50.0%
GTATAAAATTGGGGCCGAGC+CGG + chr1_3:59196657-59196676 None:intergenic 50.0%
! TGACCGGGAGAGTATGAGTT+AGG - chr1_3:59196810-59196829 Msa0129290:intron 50.0%
!!! TTGGGCTGCCTTTTTTAGGC+CGG - chr1_3:59196855-59196874 Msa0129290:intron 50.0%
CATTGGGTCCGGCCTAAAAA+AGG + chr1_3:59196866-59196885 None:intergenic 50.0%
ACGGTAGCATTGCAGAGGAA+CGG + chr1_3:59197078-59197097 None:intergenic 50.0%
ATACCACGGTAGCATTGCAG+AGG + chr1_3:59197083-59197102 None:intergenic 50.0%
GCATGTATGCCACTCAAGTC+CGG - chr1_3:59197522-59197541 Msa0129290:intron 50.0%
AATACGCAAGGCATATCCGG+TGG - chr1_3:59197960-59197979 Msa0129290:intron 50.0%
GATTTGTCACTCCTCCGTTG+TGG - chr1_3:59198181-59198200 Msa0129290:intron 50.0%
TTTCCTCTTTCCCACAACGG+AGG + chr1_3:59198195-59198214 None:intergenic 50.0%
ACCGGGCCTCCAAAAGTTAT+GGG + chr1_3:59198454-59198473 None:intergenic 50.0%
AACCGGGCCTCCAAAAGTTA+TGG + chr1_3:59198455-59198474 None:intergenic 50.0%
!! TAACTTTTGGAGGCCCGGTT+TGG - chr1_3:59198455-59198474 Msa0129290:intron 50.0%
! TGCAAGGTGCTCAACCAAAC+CGG + chr1_3:59198472-59198491 None:intergenic 50.0%
TGTTCCACATGCCTTGTGCA+TGG - chr1_3:59198542-59198561 Msa0129290:intron 50.0%
TGCATGTTGCTCCATGCACA+AGG + chr1_3:59198556-59198575 None:intergenic 50.0%
TGTGCATGGAGCAACATGCA+AGG - chr1_3:59198556-59198575 Msa0129290:intron 50.0%
GCATCCTGGATCTGCTAACT+GGG - chr1_3:59198580-59198599 Msa0129290:intron 50.0%
CTCTCGCCTTGAAGAGAATC+AGG - chr1_3:59199409-59199428 Msa0129290:intron 50.0%
! GCGCCTTGTTATGACTCTTC+CGG - chr1_3:59199795-59199814 Msa0129290:intron 50.0%
! TGCCCTCAGAGCACTAGTTA+AGG - chr1_3:59200298-59200317 Msa0129290:intron 50.0%
ATCCTCATCCTAGGACCAAC+AGG - chr1_3:59192585-59192604 Msa0129290:intron 50.0%
TGTCTTCCAATGGCTCCTGT+TGG + chr1_3:59192603-59192622 None:intergenic 50.0%
GACATTGTGATCTGTGCTGC+TGG - chr1_3:59201745-59201764 Msa0129290:CDS 50.0%
CTTTGTTGCCACGCCTTTAC+CGG - chr1_3:59193260-59193279 Msa0129290:CDS 50.0%
AGAAGTAACCGGTAAAGGCG+TGG + chr1_3:59202111-59202130 None:intergenic 50.0%
TCGACACAACTGATCCTCCT+CGG - chr1_3:59202149-59202168 Msa0129290:CDS 50.0%
ATGACAACTTTGTCCCGAGG+AGG + chr1_3:59193326-59193345 None:intergenic 50.0%
GCAGTGGTGTATGTCACATC+AGG + chr1_3:59194013-59194032 None:intergenic 50.0%
CTCCTGTTGGTCCTAGGATG+AGG + chr1_3:59192590-59192609 None:intergenic 55.0%
CAATGGCTCCTGTTGGTCCT+AGG + chr1_3:59192596-59192615 None:intergenic 55.0%
CTAGGACCAACAGGAGCCAT+TGG - chr1_3:59192594-59192613 Msa0129290:intron 55.0%
! CCGTAAAGGCGTGGCAACAA+AGG + chr1_3:59193262-59193281 None:intergenic 55.0%
TCGACGCAACTGATCCTCCT+CGG - chr1_3:59193309-59193328 Msa0129290:CDS 55.0%
AGATCGGTCCATCCTGACGT+GGG + chr1_3:59194332-59194351 None:intergenic 55.0%
AAGATCGGTCCATCCTGACG+TGG + chr1_3:59194333-59194352 None:intergenic 55.0%
CTCGGGAGTCTTCTTCCCTA+GGG + chr1_3:59194544-59194563 None:intergenic 55.0%
AGCAGCAAGAGCAGGTCTTC+CGG - chr1_3:59194576-59194595 Msa0129290:intron 55.0%
CTTGCGCATGGCTGTTGACA+TGG + chr1_3:59194832-59194851 None:intergenic 55.0%
AATGCCGCCAAAACCAGTGC+GGG - chr1_3:59194950-59194969 Msa0129290:intron 55.0%
!!! ACTCCAACCCGCACTGGTTT+TGG + chr1_3:59194960-59194979 None:intergenic 55.0%
AATGGTACTCCAACCCGCAC+TGG + chr1_3:59194966-59194985 None:intergenic 55.0%
TGGAGTCCACATGGCCTTCT+TGG + chr1_3:59195324-59195343 None:intergenic 55.0%
TACACTTGGAGAGCGGGATC+GGG + chr1_3:59195372-59195391 None:intergenic 55.0%
GTACACTTGGAGAGCGGGAT+CGG + chr1_3:59195373-59195392 None:intergenic 55.0%
ACCCCAACAGTTCCCCATCT+TGG + chr1_3:59195434-59195453 None:intergenic 55.0%
!! CAAGTGTTGGCTTCCCTAGC+TGG - chr1_3:59195564-59195583 Msa0129290:intron 55.0%
! ATTGCTAGACCGAGGCACCT+TGG + chr1_3:59195606-59195625 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1_3:59196078-59196097 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1_3:59196075-59196094 Msa0129290:intron 55.0%
AAGGTCCGGAGTTCAAACCC+CGG - chr1_3:59196121-59196140 Msa0129290:intron 55.0%
CCCCGGCCACCACAAAAAAA+TGG - chr1_3:59196138-59196157 Msa0129290:intron 55.0%
CTCATGGACCAGGCTAAGTC+GGG + chr1_3:59196169-59196188 None:intergenic 55.0%
CCTCATGGACCAGGCTAAGT+CGG + chr1_3:59196170-59196189 None:intergenic 55.0%
AGACCGGTCCGAAACCCAAT+AGG - chr1_3:59196626-59196645 Msa0129290:intron 55.0%
CCGAGCCGGGTTAACCTATT+GGG + chr1_3:59196643-59196662 None:intergenic 55.0%
CCCAATAGGTTAACCCGGCT+CGG - chr1_3:59196640-59196659 Msa0129290:intron 55.0%
GTTCCTCTGCAATGCTACCG+TGG - chr1_3:59197077-59197096 Msa0129290:intron 55.0%
ACTCCTCCGTTGTGGGAAAG+AGG - chr1_3:59198189-59198208 Msa0129290:intron 55.0%
!! GCCCATAACTTTTGGAGGCC+CGG - chr1_3:59198450-59198469 Msa0129290:intron 55.0%
! GCAAGGTGCTCAACCAAACC+GGG + chr1_3:59198471-59198490 None:intergenic 55.0%
ACCTTGCACTCCTCCAAGGT+TGG - chr1_3:59198484-59198503 Msa0129290:intron 55.0%
CCTTGCACTCCTCCAAGGTT+GGG - chr1_3:59198485-59198504 Msa0129290:intron 55.0%
AGAAGCAGACCCAACCTTGG+AGG + chr1_3:59198497-59198516 None:intergenic 55.0%
TCCAAGGTTGGGTCTGCTTC+TGG - chr1_3:59198496-59198515 Msa0129290:intron 55.0%
CCAAGGTTGGGTCTGCTTCT+GGG - chr1_3:59198497-59198516 Msa0129290:intron 55.0%
TGCTCCATGCACAAGGCATG+TGG + chr1_3:59198549-59198568 None:intergenic 55.0%
CGCATCCTGGATCTGCTAAC+TGG - chr1_3:59198579-59198598 Msa0129290:intron 55.0%
TGCACCCAGTTAGCAGATCC+AGG + chr1_3:59198587-59198606 None:intergenic 55.0%
GGATCTGCTAACTGGGTGCA+AGG - chr1_3:59198587-59198606 Msa0129290:intron 55.0%
!! AACTAGTGCTCTGAGGGCAC+TGG + chr1_3:59200297-59200316 None:intergenic 55.0%
CTCCTGTTGGTCCTAGGATG+AGG + chr1_3:59192590-59192609 None:intergenic 55.0%
CAATGGCTCCTGTTGGTCCT+AGG + chr1_3:59192596-59192615 None:intergenic 55.0%
CTAGGACCAACAGGAGCCAT+TGG - chr1_3:59192594-59192613 Msa0129290:intron 55.0%
! CGGTAAAGGCGTGGCAACAA+AGG + chr1_3:59202102-59202121 None:intergenic 55.0%
CGACACAACTGATCCTCCTC+GGG - chr1_3:59202150-59202169 Msa0129290:CDS 55.0%
GCTAGACGTGGACCGTCATG+AGG - chr1_3:59193154-59193173 Msa0129290:CDS 60.0%
CTGGCTCAACGGCCTCATGA+CGG + chr1_3:59193169-59193188 None:intergenic 60.0%
CGACGCAACTGATCCTCCTC+GGG - chr1_3:59193310-59193329 Msa0129290:CDS 60.0%
CCTCGGGAGTCTTCTTCCCT+AGG + chr1_3:59194545-59194564 None:intergenic 60.0%
CCTAGGGAAGAAGACTCCCG+AGG - chr1_3:59194542-59194561 Msa0129290:intron 60.0%
CACTCCGAAGCAGCAAGAGC+AGG - chr1_3:59194568-59194587 Msa0129290:intron 60.0%
AGCAAGAGCAGGTCTTCCGG+AGG - chr1_3:59194579-59194598 Msa0129290:intron 60.0%
CGTCATCCACACTGCTCCTC+CGG + chr1_3:59194598-59194617 None:intergenic 60.0%
!!! CCAACCCGCACTGGTTTTGG+CGG + chr1_3:59194957-59194976 None:intergenic 60.0%
! CCTAAGCCTCCAAGGTGCCT+CGG - chr1_3:59195594-59195613 Msa0129290:intron 60.0%
AAGGTTCGGGGTTCGAACCC+CGG - chr1_3:59195904-59195923 Msa0129290:intron 60.0%
TGGACTGACCCGACTTAGCC+TGG - chr1_3:59196158-59196177 Msa0129290:intron 60.0%
CCGACTTAGCCTGGTCCATG+AGG - chr1_3:59196167-59196186 Msa0129290:intron 60.0%
GTACTCGGACCTCATGGACC+AGG + chr1_3:59196179-59196198 None:intergenic 60.0%
GCCGAGCCGGGTTAACCTAT+TGG + chr1_3:59196644-59196663 None:intergenic 60.0%
TGAAGGTCGCCGGACTTGAG+TGG + chr1_3:59197534-59197553 None:intergenic 60.0%
GCAAGGCATATCCGGTGGTG+AGG - chr1_3:59197965-59197984 Msa0129290:intron 60.0%
! TGGTGAGGCGCGCATGCTTT+TGG - chr1_3:59197980-59197999 Msa0129290:intron 60.0%
! GGTGAGGCGCGCATGCTTTT+GGG - chr1_3:59197981-59198000 Msa0129290:intron 60.0%
GAGCACCTTGCACTCCTCCA+AGG - chr1_3:59198480-59198499 Msa0129290:intron 60.0%
! CCCAACCTTGGAGGAGTGCA+AGG + chr1_3:59198488-59198507 None:intergenic 60.0%
CCCAGAAGCAGACCCAACCT+TGG + chr1_3:59198500-59198519 None:intergenic 60.0%
GCAACATGCAAGGCGCATCC+TGG - chr1_3:59198566-59198585 Msa0129290:intron 60.0%
!! GGGTGCAAGGTACCGACATC+AGG - chr1_3:59198600-59198619 Msa0129290:intron 60.0%
GCTAGACGTGGACCGTCATG+AGG - chr1_3:59193154-59193173 Msa0129290:CDS 60.0%
CTGGCTCAACGGCCTCATGA+CGG + chr1_3:59193169-59193188 None:intergenic 60.0%
CTGCTTCGGAGTGACGCCTC+GGG + chr1_3:59194561-59194580 None:intergenic 65.0%
GCTGCTTCGGAGTGACGCCT+CGG + chr1_3:59194562-59194581 None:intergenic 65.0%
GGTCTTCCGGAGGAGCAGTG+TGG - chr1_3:59194589-59194608 Msa0129290:intron 65.0%
CCGCCAAAACCAGTGCGGGT+TGG - chr1_3:59194954-59194973 Msa0129290:intron 65.0%
! CCGAGGCACCTTGGAGGCTT+AGG + chr1_3:59195597-59195616 None:intergenic 65.0%
! GCTAGACCGAGGCACCTTGG+AGG + chr1_3:59195603-59195622 None:intergenic 65.0%
GGTGGCCGGGGTTTGAACTC+CGG + chr1_3:59196129-59196148 None:intergenic 65.0%
AAGCATGCGCGCCTCACCAC+CGG + chr1_3:59197979-59197998 None:intergenic 65.0%
! AGGCGCGCATGCTTTTGGGC+AGG - chr1_3:59197985-59198004 Msa0129290:intron 65.0%
! GGCGCGCATGCTTTTGGGCA+GGG - chr1_3:59197986-59198005 Msa0129290:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 59192455 59202903 59192455 ID=Msa0129290;Name=Msa0129290
chr1_3 mRNA 59192455 59202903 59192455 ID=Msa0129290-mRNA-1;Parent=Msa0129290;Name=Msa0129290-mRNA-1;_AED=0.19;_eAED=0.19;_QI=91|0.63|0.5|1|0.54|0.33|12|0|580
chr1_3 exon 59192455 59192544 59192455 ID=Msa0129290-mRNA-1:exon:19279;Parent=Msa0129290-mRNA-1
chr1_3 exon 59192870 59193054 59192870 ID=Msa0129290-mRNA-1:exon:19278;Parent=Msa0129290-mRNA-1
chr1_3 exon 59193150 59193387 59193150 ID=Msa0129290-mRNA-1:exon:19277;Parent=Msa0129290-mRNA-1
chr1_3 exon 59193527 59193661 59193527 ID=Msa0129290-mRNA-1:exon:19276;Parent=Msa0129290-mRNA-1
chr1_3 exon 59193745 59193973 59193745 ID=Msa0129290-mRNA-1:exon:19275;Parent=Msa0129290-mRNA-1
chr1_3 exon 59201238 59201245 59201238 ID=Msa0129290-mRNA-1:exon:19274;Parent=Msa0129290-mRNA-1
chr1_3 exon 59201304 59201387 59201304 ID=Msa0129290-mRNA-1:exon:19273;Parent=Msa0129290-mRNA-1
chr1_3 exon 59201713 59201897 59201713 ID=Msa0129290-mRNA-1:exon:19272;Parent=Msa0129290-mRNA-1
chr1_3 exon 59201990 59202227 59201990 ID=Msa0129290-mRNA-1:exon:19271;Parent=Msa0129290-mRNA-1
chr1_3 exon 59202362 59202496 59202362 ID=Msa0129290-mRNA-1:exon:19270;Parent=Msa0129290-mRNA-1
chr1_3 exon 59202576 59202821 59202576 ID=Msa0129290-mRNA-1:exon:19269;Parent=Msa0129290-mRNA-1
chr1_3 exon 59202843 59202903 59202843 ID=Msa0129290-mRNA-1:exon:19268;Parent=Msa0129290-mRNA-1
chr1_3 five_prime_UTR 59202843 59202903 59202843 ID=Msa0129290-mRNA-1:five_prime_utr;Parent=Msa0129290-mRNA-1
chr1_3 five_prime_UTR 59202792 59202821 59202792 ID=Msa0129290-mRNA-1:five_prime_utr;Parent=Msa0129290-mRNA-1
chr1_3 CDS 59202576 59202791 59202576 ID=Msa0129290-mRNA-1:cds;Parent=Msa0129290-mRNA-1
chr1_3 CDS 59202362 59202496 59202362 ID=Msa0129290-mRNA-1:cds;Parent=Msa0129290-mRNA-1
chr1_3 CDS 59201990 59202227 59201990 ID=Msa0129290-mRNA-1:cds;Parent=Msa0129290-mRNA-1
chr1_3 CDS 59201713 59201897 59201713 ID=Msa0129290-mRNA-1:cds;Parent=Msa0129290-mRNA-1
chr1_3 CDS 59201304 59201387 59201304 ID=Msa0129290-mRNA-1:cds;Parent=Msa0129290-mRNA-1
chr1_3 CDS 59201238 59201245 59201238 ID=Msa0129290-mRNA-1:cds;Parent=Msa0129290-mRNA-1
chr1_3 CDS 59193745 59193973 59193745 ID=Msa0129290-mRNA-1:cds;Parent=Msa0129290-mRNA-1
chr1_3 CDS 59193527 59193661 59193527 ID=Msa0129290-mRNA-1:cds;Parent=Msa0129290-mRNA-1
chr1_3 CDS 59193150 59193387 59193150 ID=Msa0129290-mRNA-1:cds;Parent=Msa0129290-mRNA-1
chr1_3 CDS 59192870 59193054 59192870 ID=Msa0129290-mRNA-1:cds;Parent=Msa0129290-mRNA-1
chr1_3 CDS 59192455 59192544 59192455 ID=Msa0129290-mRNA-1:cds;Parent=Msa0129290-mRNA-1
Gene Sequence

>Msa0129290

ATGGCAACTGAAAACAAAATCCTCATCCTAGGACCAACAGGAGCCATTGGAAGACACATAGTTTGGGCAAGTATTAAAGCAGGAAATCCAACATATGCTTTGGTTAGAAAAACACCTGGCAATGTTAACAAGCCAAAGCTTATTACAGCTGCTAATCCTGAAACCAAGGAAGAGCTTATTGACAATTACCAATCTTTAGGAGTTATTCTACTTGAAGGTGATATAAATGATCATGAAACTCTTGTTAAGGCAATCAAGCAAGTTGATATTGTGATCTGTGCTGCTGGTAGACTACTAATTGAAGATCAGGTCAAAATTATTAAAGCAATTAAAGAAGCTGGAAACGTTAAGAAATTTTTCCCATCTGAATTTGGGCTAGACGTGGACCGTCATGAGGCCGTTGAGCCAGTTAGACAAGTTTTTGAAGAAAAAGCAAGTATCCGAAGAGTAATTGAATCCGAAGGAGTTCCTTACACTTACCTTTGTTGCCACGCCTTTACGGGTTACTTCTTACGTAACTTGGCTCAACTCGACGCAACTGATCCTCCTCGGGACAAAGTTGTCATTCTTGGAGATGGAAATGTGAAAGGAGCTTATGTAACTGAGGCTGATGTGGGAACTTTTACCATTAGAGCAGCAAATGATCCCAACACATTGAACAAAGCTGTCCATATTAGACTCCCCAAGAATTATTTGACCCAAAATGAGGTTATTGCTCTTTGGGAGAAAAAGATTGGAAAAACTCTTGAGAAAACTTATGTTTCAGAGGAACAAATTGATCCAGCCAAAGATATTGAAGCTTCTGAAGCCTATCCTGATGTGACATACACCACTGCTGATGAATATTTGAATCAATTTTTTCACAGTTATTTTTTTCCAATGGCAACTGAAAACAAAATCCTCATCCTAGGACCAACAGGAGCCATTGGAAGACACATAGTTTGGGCAAGTATTAAAGCAGGAAATCCAACATATGCTTTGGTTAGAAAAACACCTGGCAATGTTAACAAGCCAAAGCTTATTACAGCTGCTAATCCTGAAACCAAGGAAGAGCTTATTGATAATTACCAATCTTTAGGAGTTATTCTACTTGAAGGTGATATAAATGATCATGAAACTCTTGTTAAGGCAATCAAGCAAGTTGACATTGTGATCTGTGCTGCTGGTAGACTACTAATTGAGGATCAGGTCAAGATTATTAAAGCAATTAAAGAAGCTGGAAACGTTAAGAAATTTTTCCCATCTGAATTTGGGCTAGACGTGGACCGTCATGAGGCCGTTGAGCCAGTTAGACAAGTTTTTGAAGAAAAAGCAAGTATCCGAAGAGTAATTGAAGCCGAAGGAGTTCCTTACACTTACCTTTGTTGCCACGCCTTTACCGGTTACTTCTTACGTAACTTGGCTCAACTCGACACAACTGATCCTCCTCGGGACAAAGTTGTCATTCTTGGAGATGGAAATGTGAAAGGAGCATATGTAACTGAGGCTGATGTGGGAACTTTTACCATTAGAGCAGCAAATGATCCCAACACATTGAACAAAGCTGTCCATATTAGACTCCCCAAGAATTATTTGACCCAAAATGAGGTTATTGCTCTTTGGGAGAAAAAGATTGGAAAAACTCTTGAGAAAACTTATGTTTCAGAGGAACAAATTGATCCAGCCAAAGATATTGAAGCTTCTGAAGCCTATCCTGATGTGACATACACCACTGCTGATGAATATTTGAATCAATTTGTCTAA
Protein sequence

>Msa0129290

MATENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTPGNVNKPKLITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDRHEAVEPVRQVFEEKASIRRVIESEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVSEEQIDPAKDIEASEAYPDVTYTTADEYLNQFFHSYFFPMATENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTPGNVNKPKLITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDRHEAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLDTTDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVSEEQIDPAKDIEASEAYPDVTYTTADEYLNQFV*