AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0728230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0728230 MtrunA17_Chr5g0420951 82.451 359 10 2 3 308 1 359 0.0 585
Msa0728230 MtrunA17_Chr8g0365241 69.553 358 57 1 2 307 5 362 0.0 504
Msa0728230 MtrunA17_Chr5g0420981 66.854 356 65 2 3 305 1 356 3.00e-171 478
Msa0728230 MtrunA17_Chr5g0423191 56.374 353 101 2 8 308 1 352 6.16e-144 409
Msa0728230 MtrunA17_Chr5g0420941 56.686 344 96 2 13 304 4 346 1.13e-137 393
Msa0728230 MtrunA17_Chr5g0421041 54.441 349 104 3 12 308 5 350 1.82e-135 387
Msa0728230 MtrunA17_Chr5g0423251 54.335 346 105 2 12 305 5 349 1.40e-134 385
Msa0728230 MtrunA17_Chr5g0420901 52.722 349 111 3 12 307 3 350 1.91e-129 372
Msa0728230 MtrunA17_Chr5g0421101 53.890 347 107 2 12 306 5 350 2.23e-129 372
Msa0728230 MtrunA17_Chr5g0421091 53.314 347 108 3 13 306 4 349 3.42e-127 367
Msa0728230 MtrunA17_Chr5g0421011 54.441 349 106 2 12 308 5 352 2.81e-126 364
Msa0728230 MtrunA17_Chr5g0423221 52.450 347 111 3 12 305 29 374 4.45e-126 365
Msa0728230 MtrunA17_Chr5g0423201 51.873 347 113 3 12 305 5 350 3.71e-123 357
Msa0728230 MtrunA17_Chr8g0375671 48.711 349 124 2 14 307 12 360 2.52e-120 350
Msa0728230 MtrunA17_Chr5g0423211 50.568 352 115 5 12 306 3 352 4.60e-119 346
Msa0728230 MtrunA17_Chr2g0314391 49.425 348 123 2 12 306 28 375 8.64e-115 336
Msa0728230 MtrunA17_Chr2g0314401 48.555 346 125 2 12 304 9 354 1.33e-113 332
Msa0728230 MtrunA17_Chr8g0375571 47.839 347 126 2 13 304 4 350 1.74e-112 329
Msa0728230 MtrunA17_Chr2g0314381 49.284 349 123 3 12 306 34 382 4.73e-112 329
Msa0728230 MtrunA17_Chr8g0375601 48.266 346 122 3 17 305 8 353 1.74e-111 327
Msa0728230 MtrunA17_Chr1g0162191 43.380 355 141 5 8 307 5 354 1.10e-95 286
Msa0728230 MtrunA17_Chr5g0420721 50.201 249 72 1 111 307 5 253 5.92e-88 263
Msa0728230 MtrunA17_Chr8g0375681 45.588 272 96 1 86 305 15 286 2.32e-81 248
Msa0728230 MtrunA17_Chr2g0314371 51.883 239 91 3 12 226 9 247 8.21e-78 240
Msa0728230 MtrunA17_Chr8g0375701 34.174 357 178 5 3 304 1 355 1.52e-73 230
Msa0728230 MtrunA17_Chr3g0087031 35.613 351 168 5 9 304 13 360 2.14e-68 217
Msa0728230 MtrunA17_Chr7g0239821 32.471 348 181 3 14 308 23 369 1.24e-64 207
Msa0728230 MtrunA17_Chr2g0296371 33.237 346 172 4 17 305 14 357 2.09e-64 207
Msa0728230 MtrunA17_Chr8g0375641 55.030 169 73 1 3 168 1 169 3.50e-63 197
Msa0728230 MtrunA17_Chr7g0239101 32.174 345 180 3 14 305 14 357 7.18e-63 202
Msa0728230 MtrunA17_Chr8g0375661 57.595 158 64 1 14 168 12 169 1.95e-62 195
Msa0728230 MtrunA17_Chr5g0420891 61.392 158 59 2 12 168 3 159 1.00e-60 191
Msa0728230 MtrunA17_Chr7g0239121 31.897 348 182 3 14 307 10 356 9.82e-60 194
Msa0728230 MtrunA17_Chr7g0239111 30.725 345 185 3 14 305 14 357 6.50e-59 192
Msa0728230 MtrunA17_Chr5g0437181 29.532 342 183 4 20 303 14 355 8.38e-51 171
Msa0728230 MtrunA17_Chr7g0242551 28.736 348 181 6 20 302 15 360 1.13e-48 166
Msa0728230 MtrunA17_Chr3g0113641 27.193 342 191 4 20 303 15 356 1.39e-46 160
Msa0728230 MtrunA17_Chr7g0232161 36.239 218 137 2 10 226 15 231 5.96e-46 158
Msa0728230 MtrunA17_Chr4g0006371 25.543 368 202 4 7 302 1 368 3.09e-44 154
Msa0728230 MtrunA17_Chr8g0375591 57.480 127 50 2 14 136 5 131 2.62e-43 145
Msa0728230 MtrunA17_Chr7g0239091 28.116 345 182 6 14 304 119 451 8.02e-43 152
Msa0728230 MtrunA17_Chr3g0145171 29.126 309 163 4 50 304 48 354 3.45e-42 149
Msa0728230 MtrunA17_Chr3g0109041 26.801 347 192 6 20 306 10 354 3.43e-39 141
Msa0728230 MtrunA17_Chr3g0128001 28.049 328 179 4 29 303 13 336 5.84e-39 140
Msa0728230 MtrunA17_Chr5g0426891 28.242 347 181 9 19 304 3 342 5.85e-39 140
Msa0728230 MtrunA17_Chr7g0239071 27.211 294 159 3 64 305 12 302 1.06e-38 139
Msa0728230 MtrunA17_Chr8g0370711 28.696 345 183 6 19 304 14 354 1.04e-35 132
Msa0728230 MtrunA17_Chr8g0370721 28.696 345 183 6 19 304 14 354 2.12e-35 130
Msa0728230 MtrunA17_Chr5g0398291 27.640 322 168 6 20 276 8 329 3.20e-34 127
Msa0728230 MtrunA17_Chr4g0064781 28.247 308 159 6 54 306 50 350 6.96e-34 127
Msa0728230 MtrunA17_Chr8g0345831 25.146 342 197 6 18 304 6 343 1.45e-33 125
Msa0728230 MtrunA17_Chr5g0420881 40.816 147 35 1 213 307 1 147 2.95e-33 119
Msa0728230 MtrunA17_Chr4g0045411 27.052 329 164 7 46 304 22 344 9.97e-32 121
Msa0728230 MtrunA17_Chr1g0179801 26.190 336 179 8 20 290 27 358 3.87e-31 120
Msa0728230 MtrunA17_Chr3g0114861 25.000 332 190 4 15 291 1 328 9.05e-31 118
Msa0728230 MtrunA17_Chr3g0126741 26.426 333 178 8 31 303 35 360 9.34e-30 116
Msa0728230 MtrunA17_Chr5g0420731 62.651 83 30 1 12 94 5 86 9.79e-30 108
Msa0728230 MtrunA17_Chr4g0050031 25.714 350 191 8 19 304 22 366 9.99e-30 115
Msa0728230 MtrunA17_Chr2g0314361 58.025 81 34 0 226 306 1 81 2.96e-29 107
Msa0728230 MtrunA17_Chr1g0187821 27.273 319 165 8 46 304 59 370 4.16e-29 114
Msa0728230 MtrunA17_Chr8g0336851 25.770 357 195 10 4 299 12 359 6.65e-29 114
Msa0728230 MtrunA17_Chr8g0336761 26.087 345 185 10 16 299 24 359 1.88e-28 112
Msa0728230 MtrunA17_Chr8g0336861 26.225 347 186 10 16 300 24 362 5.35e-28 111
Msa0728230 MtrunA17_Chr8g0336781 26.163 344 187 10 16 299 59 395 6.51e-28 111
Msa0728230 MtrunA17_Chr8g0348081 25.513 341 188 8 16 297 24 357 9.16e-28 110
Msa0728230 MtrunA17_Chr1g0187831 25.731 342 184 8 28 305 40 375 3.24e-27 109
Msa0728230 MtrunA17_Chr7g0250511 23.392 342 203 6 19 304 13 351 4.16e-27 108
Msa0728230 MtrunA17_Chr3g0125201 27.333 300 151 6 54 293 3 295 1.08e-26 106
Msa0728230 MtrunA17_Chr2g0311761 24.633 341 194 6 16 297 29 365 1.59e-26 107
Msa0728230 MtrunA17_Chr1g0162351 25.407 307 147 7 47 276 62 363 1.65e-26 107
Msa0728230 MtrunA17_Chr2g0332191 24.699 332 181 6 28 297 25 349 2.12e-26 107
Msa0728230 MtrunA17_Chr8g0336751 24.501 351 199 8 16 306 55 399 2.48e-26 107
Msa0728230 MtrunA17_Chr2g0311921 23.497 366 208 8 3 304 1 358 2.91e-26 106
Msa0728230 MtrunA17_Chr8g0336631 25.146 342 189 9 16 297 24 358 3.58e-26 106
Msa0728230 MtrunA17_Chr8g0354241 24.217 351 195 8 19 305 32 375 3.60e-26 106
Msa0728230 MtrunA17_Chr1g0162321 25.574 305 143 7 47 273 62 360 5.01e-26 106
Msa0728230 MtrunA17_Chr5g0424201 23.054 334 196 7 15 291 4 333 1.44e-25 104
Msa0728230 MtrunA17_Chr8g0354261 23.647 351 197 8 19 305 32 375 2.14e-25 104
Msa0728230 MtrunA17_Chr7g0265221 21.777 349 198 7 28 304 35 380 2.47e-25 104
Msa0728230 MtrunA17_Chr4g0045451 26.115 314 152 7 47 285 19 327 1.24e-24 102
Msa0728230 MtrunA17_Chr2g0289341 22.368 304 167 7 52 296 2 295 1.66e-24 100
Msa0728230 MtrunA17_Chr7g0266651 23.647 351 196 10 19 306 23 364 4.10e-24 100
Msa0728230 MtrunA17_Chr3g0145181 25.697 323 175 7 19 279 12 331 1.25e-23 99.0
Msa0728230 MtrunA17_Chr1g0187811 23.699 346 188 8 28 304 155 493 1.65e-23 100
Msa0728230 MtrunA17_Chr2g0285931 34.043 188 110 6 47 229 21 199 1.80e-23 98.6
Msa0728230 MtrunA17_Chr5g0424211 24.918 305 164 8 29 273 16 315 2.34e-23 98.2
Msa0728230 MtrunA17_Chr8g0371931 22.968 283 160 4 37 263 23 303 3.17e-23 98.2
Msa0728230 MtrunA17_Chr2g0311831 23.964 338 193 7 19 297 32 364 3.20e-23 98.2
Msa0728230 MtrunA17_Chr4g0066121 25.305 328 180 9 16 284 24 345 3.91e-23 97.8
Msa0728230 MtrunA17_Chr4g0045441 26.769 325 158 7 47 296 19 338 4.19e-23 97.8
Msa0728230 MtrunA17_Chr3g0121141 22.667 300 163 7 55 296 5 293 5.18e-23 96.7
Msa0728230 MtrunA17_Chr5g0439011 24.422 303 158 7 55 296 6 298 6.42e-23 96.7
Msa0728230 MtrunA17_Chr1g0162361 25.000 320 163 7 35 285 8 319 1.00e-22 96.7
Msa0728230 MtrunA17_Chr3g0102041 24.164 269 147 4 51 263 36 303 1.27e-22 96.3
Msa0728230 MtrunA17_Chr4g0045471 25.325 308 145 9 47 276 19 319 1.68e-22 95.9
Msa0728230 MtrunA17_Chr6g0472861 22.989 348 197 9 16 297 24 366 1.76e-22 96.3
Msa0728230 MtrunA17_Chr3g0093761 24.138 348 191 7 19 304 17 353 1.86e-22 95.9
Msa0728230 MtrunA17_Chr1g0204181 23.779 307 171 5 31 276 38 342 3.38e-22 95.5
Msa0728230 MtrunA17_Chr7g0220011 22.571 319 184 6 29 291 14 325 4.20e-22 94.7
Msa0728230 MtrunA17_Chr8g0371921 23.048 269 150 3 51 263 36 303 9.94e-22 94.0
Msa0728230 MtrunA17_Chr3g0145201 24.118 340 188 7 7 279 630 966 1.16e-21 95.5
Msa0728230 MtrunA17_Chr4g0045431 26.449 276 129 5 47 250 19 292 1.30e-21 93.6
Msa0728230 MtrunA17_Chr3g0093741 24.713 348 190 7 19 304 17 354 1.39e-21 93.6
Msa0728230 MtrunA17_Chr5g0405411 23.048 269 150 3 51 263 36 303 1.48e-21 93.6
Msa0728230 MtrunA17_Chr7g0265351 24.762 315 165 6 50 304 35 337 1.95e-21 92.8
Msa0728230 MtrunA17_Chr8g0351101 24.679 312 167 6 28 276 30 336 2.28e-21 93.2
Msa0728230 MtrunA17_Chr3g0093751 24.355 349 190 8 19 304 17 354 2.91e-21 92.4
Msa0728230 MtrunA17_Chr6g0474391 22.476 307 175 5 31 276 43 347 2.95e-21 92.8
Msa0728230 MtrunA17_Chr7g0235951 23.143 350 197 9 19 304 32 373 1.17e-20 91.3
Msa0728230 MtrunA17_Chr4g0055591 24.000 350 190 10 19 304 24 361 1.88e-20 90.5
Msa0728230 MtrunA17_Chr3g0130391 26.000 300 159 7 31 269 45 342 1.92e-20 90.5
Msa0728230 MtrunA17_Chr1g0191201 26.502 283 137 6 53 269 52 329 2.62e-20 90.1
Msa0728230 MtrunA17_Chr7g0225881 22.319 345 194 9 19 297 27 363 3.29e-20 89.7
Msa0728230 MtrunA17_Chr5g0412681 23.226 310 161 5 45 291 24 319 5.45e-20 89.0
Msa0728230 MtrunA17_Chr4g0066991 22.254 346 185 8 19 304 32 353 6.70e-20 88.6
Msa0728230 MtrunA17_Chr2g0311691 21.557 334 189 7 19 286 26 352 7.85e-20 88.6
Msa0728230 MtrunA17_Chr1g0184111 22.424 330 188 6 25 294 8 329 9.78e-20 88.2
Msa0728230 MtrunA17_Chr8g0335411 21.965 346 206 6 19 304 32 373 1.05e-19 88.6
Msa0728230 MtrunA17_Chr5g0412651 23.952 334 186 8 27 299 12 338 1.13e-19 87.8
Msa0728230 MtrunA17_Chr8g0336831 30.263 228 144 6 3 223 11 230 1.62e-19 85.9
Msa0728230 MtrunA17_Chr2g0311681 21.148 331 194 6 19 286 26 352 2.27e-19 87.4
Msa0728230 MtrunA17_Chr1g0167951 24.179 335 193 5 19 297 19 348 2.60e-19 87.0
Msa0728230 MtrunA17_Chr3g0125421 25.263 285 138 8 53 269 35 312 3.79e-19 86.7
Msa0728230 MtrunA17_Chr7g0220001 23.364 321 179 8 29 291 16 327 7.46e-19 85.5
Msa0728230 MtrunA17_Chr1g0184161 24.080 299 162 6 51 291 35 326 9.54e-19 85.5
Msa0728230 MtrunA17_Chr7g0236011 22.284 359 209 10 8 304 23 373 1.09e-18 85.5
Msa0728230 MtrunA17_Chr1g0167961 22.674 344 203 7 19 304 34 372 1.28e-18 85.1
Msa0728230 MtrunA17_Chr1g0167911 23.739 337 193 8 19 297 19 349 1.57e-18 84.7
Msa0728230 MtrunA17_Chr7g0247991 22.419 339 196 9 19 297 32 363 1.95e-18 84.7
Msa0728230 MtrunA17_Chr2g0311711 22.090 335 191 7 19 290 30 357 4.28e-18 83.6
Msa0728230 MtrunA17_Chr1g0161041 22.965 344 198 9 19 303 59 394 8.17e-18 83.2
Msa0728230 MtrunA17_Chr4g0045461 25.243 309 160 5 47 285 19 326 9.05e-18 82.8
Msa0728230 MtrunA17_Chr8g0364471 21.958 337 199 6 19 295 32 364 1.00e-17 82.8
Msa0728230 MtrunA17_Chr2g0311741 20.952 315 184 6 37 293 10 317 1.08e-17 82.0
Msa0728230 MtrunA17_Chr2g0311701 21.127 355 206 8 19 307 32 378 1.12e-17 82.8
Msa0728230 MtrunA17_Chr1g0170631 25.521 192 90 2 168 306 3 194 1.29e-17 79.7
Msa0728230 MtrunA17_Chr3g0114871 25.822 213 148 7 20 226 7 215 1.63e-17 80.9
Msa0728230 MtrunA17_Chr4g0011311 27.230 213 144 4 19 226 32 238 1.66e-17 81.3
Msa0728230 MtrunA17_Chr1g0184121 22.291 323 191 6 25 291 8 326 2.79e-17 81.3
Msa0728230 MtrunA17_Chr8g0384461 22.812 320 180 6 29 286 24 338 4.84e-17 80.5
Msa0728230 MtrunA17_Chr1g0184151 22.981 322 183 6 28 291 12 326 6.72e-17 80.1
Msa0728230 MtrunA17_Chr1g0148771 29.050 179 109 5 54 226 63 229 8.61e-17 79.7
Msa0728230 MtrunA17_Chr5g0412671 22.973 296 171 5 54 292 38 333 1.51e-16 79.0
Msa0728230 MtrunA17_Chr6g0455481 22.188 320 185 7 29 291 17 329 5.08e-16 77.4
Msa0728230 MtrunA17_Chr1g0184101 22.559 297 165 6 51 289 35 324 5.66e-16 77.4
Msa0728230 MtrunA17_Chr2g0313111 28.947 190 116 7 35 221 14 187 6.68e-16 77.0
Msa0728230 MtrunA17_Chr4g0052251 28.313 166 111 4 76 236 45 207 1.13e-15 76.3
Msa0728230 MtrunA17_Chr8g0358941 30.220 182 105 7 48 220 21 189 1.61e-15 75.9
Msa0728230 MtrunA17_Chr2g0311631 28.241 216 146 4 19 232 21 229 1.09e-14 73.9
Msa0728230 MtrunA17_Chr6g0488511 19.856 277 156 4 54 272 3 271 5.13e-14 71.2
Msa0728230 MtrunA17_Chr1g0184241 19.591 342 212 6 19 304 33 367 7.49e-13 68.6
Msa0728230 MtrunA17_Chr3g0105281 28.814 177 106 6 51 218 31 196 1.38e-12 67.4
Msa0728230 MtrunA17_Chr1g0158021 26.857 175 113 6 50 218 45 210 2.04e-12 66.2
Msa0728230 MtrunA17_Chr4g0075431 25.625 160 109 4 52 210 2 152 2.23e-12 64.7
Msa0728230 MtrunA17_Chr8g0375611 49.020 51 26 0 257 307 1 51 7.66e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0728230 AT1G17020.1 42.693 349 143 5 13 304 10 358 1.84e-96 289
Msa0728230 AT1G17010.1 42.614 352 145 5 13 307 10 361 1.88e-95 286
Msa0728230 AT4G25300.1 41.834 349 145 6 13 304 9 356 4.88e-92 278
Msa0728230 AT4G25310.1 40.805 348 147 5 13 304 9 353 3.30e-87 265
Msa0728230 AT1G78550.1 38.329 347 159 4 13 304 10 356 1.44e-84 258
Msa0728230 AT4G25310.2 42.188 320 154 6 13 304 9 325 2.38e-81 249
Msa0728230 AT1G78550.2 37.956 274 118 1 83 304 5 278 9.63e-66 208
Msa0728230 AT3G21420.1 33.333 351 173 4 17 306 14 364 1.26e-63 205
Msa0728230 AT2G38240.1 30.792 341 177 4 19 302 11 349 1.75e-58 191
Msa0728230 AT3G55970.1 29.395 347 182 5 20 303 14 360 9.64e-49 166
Msa0728230 AT5G05600.1 26.254 339 192 4 20 300 27 365 3.65e-45 157
Msa0728230 AT3G11180.1 28.863 343 178 6 20 300 56 394 1.18e-44 157
Msa0728230 AT3G11180.2 29.781 319 158 6 20 276 56 370 6.42e-43 152
Msa0728230 AT5G20400.1 28.788 330 174 6 19 288 8 336 3.77e-41 146
Msa0728230 AT5G20550.1 28.701 331 175 7 19 289 8 337 7.24e-40 143
Msa0728230 AT1G49390.1 28.037 321 168 7 19 279 8 325 1.44e-38 139
Msa0728230 AT4G22880.1 27.374 358 190 7 15 306 2 355 8.77e-38 137
Msa0728230 AT4G22880.2 27.374 358 190 7 15 306 2 355 8.77e-38 137
Msa0728230 AT4G22880.3 27.374 358 190 7 15 306 2 355 8.77e-38 137
Msa0728230 AT3G55970.2 34.842 221 132 5 20 230 14 232 1.72e-37 135
Msa0728230 AT5G05600.2 31.429 210 138 3 20 223 27 236 4.58e-37 134
Msa0728230 AT5G54000.2 26.727 333 178 7 19 288 8 337 8.59e-37 135
Msa0728230 AT4G10490.1 25.826 333 187 6 28 303 15 344 1.48e-34 129
Msa0728230 AT5G24530.1 26.398 322 177 5 29 294 13 330 1.62e-34 129
Msa0728230 AT2G44800.1 27.405 343 187 8 19 303 15 353 3.12e-33 125
Msa0728230 AT4G10500.1 24.924 329 188 6 31 303 20 345 7.58e-33 124
Msa0728230 AT2G36690.2 26.286 350 190 8 20 306 21 365 9.84e-33 124
Msa0728230 AT2G36690.1 26.286 350 190 8 20 306 21 365 9.84e-33 124
Msa0728230 AT3G60290.1 28.367 349 182 10 19 306 15 356 3.49e-32 122
Msa0728230 AT4G16330.2 26.623 308 161 6 51 302 64 362 4.19e-32 122
Msa0728230 AT3G13610.1 26.437 348 182 10 19 304 26 361 1.88e-31 120
Msa0728230 AT1G55290.1 25.882 340 187 6 19 300 25 357 6.60e-31 119
Msa0728230 AT4G25300.2 34.031 191 73 2 167 304 72 262 8.53e-31 117
Msa0728230 AT5G59540.1 27.479 353 185 11 16 304 21 366 1.51e-30 118
Msa0728230 AT1G49390.2 26.829 246 127 2 87 279 1 246 7.70e-30 114
Msa0728230 AT5G08640.2 25.392 319 175 7 31 293 19 330 1.27e-28 112
Msa0728230 AT5G08640.1 25.392 319 175 7 31 293 19 330 1.27e-28 112
Msa0728230 AT5G63590.1 28.520 277 138 6 49 269 9 281 7.50e-28 110
Msa0728230 AT3G19000.1 27.922 308 146 6 49 285 27 329 3.76e-27 109
Msa0728230 AT5G54000.1 24.903 257 138 3 87 288 1 257 3.85e-27 107
Msa0728230 AT3G12900.1 24.419 344 196 8 19 305 21 357 1.30e-26 107
Msa0728230 AT5G43440.1 25.070 355 191 7 16 304 20 365 3.36e-26 106
Msa0728230 AT3G19010.1 25.688 327 158 7 52 306 26 339 5.33e-25 103
Msa0728230 AT3G19010.4 25.688 327 158 7 52 306 26 339 5.33e-25 103
Msa0728230 AT3G19000.2 31.683 202 115 5 49 232 27 223 1.13e-24 100
Msa0728230 AT1G06620.1 24.507 355 190 8 16 304 23 365 1.93e-24 102
Msa0728230 AT5G59530.1 24.581 358 188 8 16 304 20 364 2.00e-24 102
Msa0728230 AT1G05010.1 24.183 306 163 8 52 296 2 299 1.03e-23 99.4
Msa0728230 AT1G12010.1 24.834 302 157 7 53 296 6 295 1.07e-23 99.4
Msa0728230 AT2G30830.1 25.740 338 186 8 19 297 20 351 1.18e-23 99.8
Msa0728230 AT3G51240.1 21.379 290 173 2 29 263 13 302 1.59e-23 99.4
Msa0728230 AT1G06650.2 24.432 352 189 9 16 299 22 364 5.11e-23 98.2
Msa0728230 AT1G04380.1 25.163 306 169 5 54 304 45 345 1.51e-22 96.3
Msa0728230 AT4G25420.1 24.727 275 147 3 54 268 61 335 2.93e-22 95.9
Msa0728230 AT1G04350.1 24.207 347 191 10 16 299 18 355 4.98e-22 95.1
Msa0728230 AT1G77330.1 25.083 303 153 7 54 293 3 294 7.02e-22 94.0
Msa0728230 AT4G16330.1 26.407 231 113 3 125 302 30 256 8.26e-22 92.8
Msa0728230 AT1G06640.1 24.507 355 185 11 16 299 22 364 1.27e-21 94.4
Msa0728230 AT5G43450.1 23.380 355 205 7 6 299 9 357 1.99e-21 93.6
Msa0728230 AT1G15550.1 22.356 331 186 7 28 294 27 350 2.08e-21 93.6
Msa0728230 AT4G25420.2 29.189 185 122 2 54 229 61 245 2.42e-21 92.4
Msa0728230 AT3G19010.2 28.079 203 120 4 52 235 26 221 2.57e-21 92.0
Msa0728230 AT1G62380.1 22.924 301 164 8 53 296 6 295 3.56e-21 92.0
Msa0728230 AT2G19590.1 24.013 304 154 8 53 297 10 295 3.79e-21 92.0
Msa0728230 AT5G07200.1 24.919 309 168 6 22 268 28 334 4.59e-21 92.8
Msa0728230 AT1G06645.1 25.000 352 184 12 16 299 35 374 1.13e-20 91.7
Msa0728230 AT1G80340.1 24.837 306 157 8 30 273 26 320 4.20e-20 89.7
Msa0728230 AT5G59540.2 32.159 227 135 10 16 232 21 238 4.42e-20 88.6
Msa0728230 AT5G63600.1 24.762 315 163 10 46 301 23 322 1.16e-19 88.2
Msa0728230 AT5G63600.2 24.684 316 163 10 46 301 23 323 1.72e-19 87.4
Msa0728230 AT5G63580.2 31.217 189 119 6 40 223 5 187 3.90e-19 85.1
Msa0728230 AT5G63580.1 31.122 196 122 7 40 230 5 192 4.71e-19 85.1
Msa0728230 AT1G60980.1 25.267 281 142 5 53 267 56 334 1.19e-18 85.9
Msa0728230 AT3G61400.1 22.992 361 195 10 16 305 21 369 1.91e-18 85.1
Msa0728230 AT3G19010.3 24.595 309 154 8 52 306 26 309 2.30e-18 84.3
Msa0728230 AT5G51810.1 23.934 305 156 7 29 268 40 333 3.17e-18 84.7
Msa0728230 AT1G06650.1 27.602 221 138 5 16 223 22 233 6.79e-18 82.8
Msa0728230 AT1G06640.3 29.018 224 131 8 16 223 22 233 1.05e-17 82.0
Msa0728230 AT1G06620.2 27.511 229 140 7 16 232 23 237 1.29e-17 81.6
Msa0728230 AT5G43440.2 28.326 233 144 6 16 236 20 241 2.09e-17 81.3
Msa0728230 AT1G06640.2 29.018 224 131 8 16 223 22 233 2.23e-17 81.6
Msa0728230 AT1G03410.2 23.779 307 163 9 51 293 52 351 2.86e-17 81.6
Msa0728230 AT1G03410.1 24.104 307 162 9 51 293 89 388 3.37e-17 81.6
Msa0728230 AT5G51810.2 27.907 215 130 6 29 229 40 243 4.76e-17 80.1
Msa0728230 AT1G44090.1 25.879 313 159 9 23 271 37 340 1.07e-16 80.1
Msa0728230 AT1G78440.1 29.670 182 110 7 54 229 18 187 1.15e-16 79.7
Msa0728230 AT5G43935.1 24.752 303 152 10 51 303 16 292 5.70e-16 77.0
Msa0728230 AT1G03400.1 22.714 339 186 9 19 295 19 343 6.52e-16 77.8
Msa0728230 AT2G30840.1 22.515 342 196 8 19 297 20 355 7.37e-16 77.8
Msa0728230 AT5G07480.1 27.835 194 109 5 50 226 40 219 2.11e-15 76.3
Msa0728230 AT2G25450.1 22.899 345 202 7 19 304 20 359 7.81e-15 74.7
Msa0728230 AT3G61400.2 26.106 226 143 6 16 226 21 237 1.24e-14 73.2
Msa0728230 AT5G43450.2 26.471 238 160 6 6 236 9 238 1.42e-14 73.2
Msa0728230 AT1G80330.1 21.477 298 168 6 52 289 47 338 1.64e-14 73.6
Msa0728230 AT1G04380.2 28.736 174 118 3 54 226 45 213 7.41e-14 70.9
Msa0728230 AT2G34555.1 30.000 170 103 6 54 217 27 186 2.97e-13 69.7
Msa0728230 AT1G30040.2 25.714 175 116 5 48 217 25 190 4.06e-13 68.6
Msa0728230 AT5G63595.1 27.778 180 103 6 50 226 21 176 5.78e-13 68.2
Msa0728230 AT1G30040.1 25.714 175 116 5 48 217 25 190 7.64e-13 68.6
Msa0728230 AT1G03400.2 26.027 219 139 7 19 230 19 221 1.07e-12 68.6
Msa0728230 AT4G21690.1 25.000 204 134 5 31 226 29 221 1.18e-12 68.2
Msa0728230 AT5G12270.1 20.833 336 201 6 28 304 30 359 1.46e-11 64.7

Find 59 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGACGATCGTTGAGTTTA+TGG 0.164144 5_1:-32716266 Msa0728230:CDS
TTGAACACTGCAGGGCTTTC+AGG 0.166389 5_1:+32715557 None:intergenic
CAAGTATTCCCCAACCATTC+AGG 0.301424 5_1:-32716426 Msa0728230:intron
GGAATACTTGGAAACAAGTT+TGG 0.302805 5_1:+32716439 None:intergenic
CAAAGAATGGGGTTTCTTCC+AGG 0.312719 5_1:-32718177 Msa0728230:intron
TCTGACGGTGCCTTCTGTTC+AGG 0.335911 5_1:-32718369 Msa0728230:CDS
CTGAATGGTTGGGGAATACT+TGG 0.360937 5_1:+32716427 None:intergenic
AATATAACGTTCTGGAACTT+TGG 0.364555 5_1:+32718325 None:intergenic
AAGAAATCTAGCAACTCATT+TGG 0.367512 5_1:+32716223 None:intergenic
GCTAGACTGAATGCAATTCT+TGG 0.372792 5_1:-32715602 Msa0728230:CDS
TTGAGTCCAATGACTTGTTC+TGG 0.389849 5_1:+32716148 None:intergenic
ATCGTTGAGTTTATGGCAAA+AGG 0.398124 5_1:-32716259 Msa0728230:CDS
CAGAAGAACACAAACTTGAA+TGG 0.417798 5_1:-32716507 Msa0728230:CDS
CGATCATGCATGCAAAGAAT+GGG 0.419677 5_1:-32718189 Msa0728230:CDS
AACTTATTCAAATCGATGAT+TGG 0.420121 5_1:+32718248 None:intergenic
AATCTAGCAACTCATTTGGT+TGG 0.424098 5_1:+32716227 None:intergenic
TCAGACATGGTGAAGAATCT+TGG 0.430798 5_1:-32718398 Msa0728230:CDS
TATTTCTCACGCAAGCTTGA+AGG 0.436191 5_1:-32715503 Msa0728230:CDS
TTTGGATTTCTTATATATGT+TGG 0.444271 5_1:+32716457 None:intergenic
TCGATCATGCATGCAAAGAA+TGG 0.447725 5_1:-32718190 Msa0728230:CDS
CTTTCAGGAGTAACAAGGCT+TGG 0.474827 5_1:+32715572 None:intergenic
CCTGGTGATATGGAGGGGTT+TGG 0.474899 5_1:-32716547 Msa0728230:CDS
AGTAATTCATCCTCATTGCT+TGG 0.476820 5_1:+32716188 None:intergenic
AGAAGAACACAAACTTGAAT+GGG 0.481222 5_1:-32716506 Msa0728230:CDS
CCAACTTTATTGAACACTGC+AGG 0.485987 5_1:+32715548 None:intergenic
TAGATACAACTAGAGGGTCT+TGG 0.489914 5_1:+32718294 None:intergenic
GGAGTAACAAGGCTTGGTGC+TGG 0.492537 5_1:+32715578 None:intergenic
ACTTGTTCTGGTTGAGGACA+TGG 0.507834 5_1:+32716160 None:intergenic
CCAATGACTTGTTCTGGTTG+AGG 0.508065 5_1:+32716154 None:intergenic
TCACGGAGTCGATCTATCAT+TGG 0.511176 5_1:-32716644 Msa0728230:CDS
ACGTTCTGGAACTTTGGTGA+TGG 0.515981 5_1:+32718331 None:intergenic
TGTCTTGAGGATGGAAAACA+AGG 0.541078 5_1:-32715465 Msa0728230:CDS
CGTTCTGGAACTTTGGTGAT+GGG 0.543906 5_1:+32718332 None:intergenic
CCTGCAGTGTTCAATAAAGT+TGG 0.546978 5_1:-32715548 Msa0728230:CDS
TTGCTAGATTTCTTTGAAGA+GGG 0.548174 5_1:-32716214 Msa0728230:CDS
AGCACTGTTAAATGTGGCAA+TGG 0.550490 5_1:+32715622 None:intergenic
CAACTTTATTGAACACTGCA+GGG 0.551137 5_1:+32715549 None:intergenic
GTTGCTAGATTTCTTTGAAG+AGG 0.558294 5_1:-32716215 Msa0728230:CDS
CCAAACCCCTCCATATCACC+AGG 0.568599 5_1:+32716547 None:intergenic
ACACATTGATGTCTTGAGGA+TGG 0.573486 5_1:-32715474 Msa0728230:CDS
CAGGGCTTTCAGGAGTAACA+AGG 0.577977 5_1:+32715567 None:intergenic
TATTTCCAGCTGATCAATCA+CGG 0.578873 5_1:-32716661 Msa0728230:intron
AATCACACATTGATGTCTTG+AGG 0.584321 5_1:-32715478 Msa0728230:CDS
TTTACTAGCTCCTGAACAGA+AGG 0.585140 5_1:+32718359 None:intergenic
CAGTCTAGCACTGTTAAATG+TGG 0.610371 5_1:+32715616 None:intergenic
GAATCTTGGAACCTCTCTGA+CGG 0.630102 5_1:-32718384 Msa0728230:CDS
AAGTTGTTATCTGAAGAAGA+TGG 0.630763 5_1:-32718230 Msa0728230:CDS
GTTTGACAGATAATGACGAA+TGG 0.632619 5_1:-32715701 Msa0728230:intron
AGAGTTCTTCAATCTATCTG+CGG 0.636691 5_1:-32716596 Msa0728230:CDS
ATTGTGCTAGATACAACTAG+AGG 0.639653 5_1:+32718287 None:intergenic
TTGTGCTAGATACAACTAGA+GGG 0.647002 5_1:+32718288 None:intergenic
GTTCTTCAATCTATCTGCGG+AGG 0.647422 5_1:-32716593 Msa0728230:CDS
AGTGTTCAATAAAGTTGGAG+TGG 0.652929 5_1:-32715543 Msa0728230:CDS
GATCATGCATGCAAAGAATG+GGG 0.659038 5_1:-32718188 Msa0728230:CDS
GCAAGCTATGGATTCAGACA+TGG 0.664545 5_1:-32718411 Msa0728230:CDS
AAGAGGGAAGCCAAGCAATG+AGG 0.669106 5_1:-32716198 Msa0728230:CDS
AACAGAAGGCACCGTCAGAG+AGG 0.678848 5_1:+32718373 None:intergenic
TGTTCTGGTTGAGGACATGG+AGG 0.710542 5_1:+32716163 None:intergenic
GTCTTGAGGATGGAAAACAA+GGG 0.754653 5_1:-32715464 Msa0728230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAATAATTCTTTTTTAA+TGG + chr5_1:32716105-32716124 None:intergenic 10.0%
!! AGATTTACAAATAATATTTA+AGG + chr5_1:32716189-32716208 None:intergenic 10.0%
!!! TTTATCTTTAAAAATGTTTA+CGG + chr5_1:32716340-32716359 None:intergenic 10.0%
!!! TATTATATTATGTTTTAAGT+TGG - chr5_1:32716438-32716457 Msa0728230:CDS 10.0%
!! GTGAAATTAAAATACAATAA+TGG + chr5_1:32715735-32715754 None:intergenic 15.0%
!! ACATTCAAAATAAAATACAT+GGG + chr5_1:32715884-32715903 None:intergenic 15.0%
!! AAGATGAAAAAAATGAAATT+TGG + chr5_1:32716054-32716073 None:intergenic 15.0%
!!! GTAAACATTTTTAAAGATAA+AGG - chr5_1:32716339-32716358 Msa0728230:intron 15.0%
!!! TGTTTATTTTAAGTTTAAGT+TGG + chr5_1:32716815-32716834 None:intergenic 15.0%
!!! GGTATTTTAACTTAATTTAA+AGG + chr5_1:32716862-32716881 None:intergenic 15.0%
!!! TTTAGAGTTATATTCATTTA+AGG + chr5_1:32718025-32718044 None:intergenic 15.0%
!!! TTCATTTAACTTGTTTTCTT+TGG + chr5_1:32715851-32715870 None:intergenic 20.0%
!! GACATTCAAAATAAAATACA+TGG + chr5_1:32715885-32715904 None:intergenic 20.0%
!!! GTTTTAAATACTAACAATAC+TGG - chr5_1:32716027-32716046 Msa0728230:intron 20.0%
!! ATTTCTTCAATAATTCATCA+AGG - chr5_1:32716118-32716137 Msa0728230:intron 20.0%
!! ATTATAATGATTGTTTAGTG+AGG - chr5_1:32716156-32716175 Msa0728230:intron 20.0%
!! TTATAATGATTGTTTAGTGA+GGG - chr5_1:32716157-32716176 Msa0728230:intron 20.0%
!!! TTTATTCTTTGGAAGAAAAT+TGG + chr5_1:32716304-32716323 None:intergenic 20.0%
!! TTCTTCCAAAGAATAAAATT+TGG - chr5_1:32716307-32716326 Msa0728230:CDS 20.0%
!!! TTGATCCAAATTTTATTCTT+TGG + chr5_1:32716315-32716334 None:intergenic 20.0%
!!! TAAGTTTAGAACTTTAAATC+AGG - chr5_1:32716391-32716410 Msa0728230:intron 20.0%
!!! TTTTTTGACAAACAATTTAG+AGG + chr5_1:32716664-32716683 None:intergenic 20.0%
!!! AATATTTGAAATTGCAATTG+TGG + chr5_1:32716883-32716902 None:intergenic 20.0%
!!! TCCATCTTTTTATTTTTTGA+GGG - chr5_1:32716968-32716987 Msa0728230:intron 20.0%
!!! ACAAGTCTATCTTAATTTTT+AGG - chr5_1:32716996-32717015 Msa0728230:intron 20.0%
!! TAGAGATATGATATGATATA+CGG + chr5_1:32717125-32717144 None:intergenic 20.0%
!! TTTGGATTTCTTATATATGT+TGG + chr5_1:32717416-32717435 None:intergenic 20.0%
!!! AATTAAACTCGGTTTTAAAT+CGG + chr5_1:32717893-32717912 None:intergenic 20.0%
!! ATATGCATGAAAATTAAACT+CGG + chr5_1:32717904-32717923 None:intergenic 20.0%
!!! ATTAACAAATTCTCTTTTTC+AGG - chr5_1:32718052-32718071 Msa0728230:intron 20.0%
! AACTTATTCAAATCGATGAT+TGG + chr5_1:32715625-32715644 None:intergenic 25.0%
! TTTGTCAAGATAGTTCTTTA+TGG - chr5_1:32716005-32716024 Msa0728230:intron 25.0%
!!! GTCCATCTTTTTATTTTTTG+AGG - chr5_1:32716967-32716986 Msa0728230:intron 25.0%
!!! CCATCTTTTTATTTTTTGAG+GGG - chr5_1:32716969-32716988 Msa0728230:intron 25.0%
! AACGACATAATGTTACAATT+TGG - chr5_1:32717148-32717167 Msa0728230:intron 25.0%
! ACGACATAATGTTACAATTT+GGG - chr5_1:32717149-32717168 Msa0728230:intron 25.0%
! GCTGGAAATAATATGATATA+TGG + chr5_1:32717199-32717218 None:intergenic 25.0%
! AAAAAAAAACCTGAATGGTT+GGG + chr5_1:32717456-32717475 None:intergenic 25.0%
! AAAAAAAAAACCTGAATGGT+TGG + chr5_1:32717457-32717476 None:intergenic 25.0%
! AAGGAAAAAAAAAACCTGAA+TGG + chr5_1:32717461-32717480 None:intergenic 25.0%
! ATATAACACATATAGAAGGA+AGG + chr5_1:32717480-32717499 None:intergenic 25.0%
! TTGCATATAACACATATAGA+AGG + chr5_1:32717484-32717503 None:intergenic 25.0%
!! AATATAACGTTCTGGAACTT+TGG + chr5_1:32715548-32715567 None:intergenic 30.0%
! TTTTGCTGAATATAACGTTC+TGG + chr5_1:32715556-32715575 None:intergenic 30.0%
AAGTTGTTATCTGAAGAAGA+TGG - chr5_1:32715640-32715659 Msa0728230:CDS 30.0%
TTGATTCAAAATGTCACTCA+TGG - chr5_1:32716515-32716534 Msa0728230:CDS 30.0%
TCCCTTTCATCACATAATAT+TGG - chr5_1:32716551-32716570 Msa0728230:CDS 30.0%
CCCAATATTATGTGATGAAA+GGG + chr5_1:32716555-32716574 None:intergenic 30.0%
CCCTTTCATCACATAATATT+GGG - chr5_1:32716552-32716571 Msa0728230:CDS 30.0%
ACCCAATATTATGTGATGAA+AGG + chr5_1:32716556-32716575 None:intergenic 30.0%
GACAAACAATTTAGAGGTTT+GGG + chr5_1:32716658-32716677 None:intergenic 30.0%
TGACAAACAATTTAGAGGTT+TGG + chr5_1:32716659-32716678 None:intergenic 30.0%
GTACAAAACATTACTCACAT+CGG + chr5_1:32716735-32716754 None:intergenic 30.0%
! AAGATGGACTCATACAAATA+TGG + chr5_1:32716956-32716975 None:intergenic 30.0%
CCCCTCAAAAAATAAAAAGA+TGG + chr5_1:32716972-32716991 None:intergenic 30.0%
GATTATATGGATAAAGCTAG+TGG + chr5_1:32717044-32717063 None:intergenic 30.0%
!!! GCTAACTTTTTGGGATTATA+TGG + chr5_1:32717057-32717076 None:intergenic 30.0%
! ATTTCAGTGGCTAACTTTTT+GGG + chr5_1:32717066-32717085 None:intergenic 30.0%
! TATTTCAGTGGCTAACTTTT+TGG + chr5_1:32717067-32717086 None:intergenic 30.0%
!!! CATGTTTTTGGTTATTTCAG+TGG + chr5_1:32717079-32717098 None:intergenic 30.0%
TGATATACGGTAAAACATTG+TGG + chr5_1:32717112-32717131 None:intergenic 30.0%
!!! AAATTTTTTGGGCAAAAACC+TGG - chr5_1:32717305-32717324 Msa0728230:intron 30.0%
AGAAGAACACAAACTTGAAT+GGG - chr5_1:32717364-32717383 Msa0728230:intron 30.0%
AAAAAAAACCTGAATGGTTG+GGG + chr5_1:32717455-32717474 None:intergenic 30.0%
CTCTAGATTATCTCTGTAAT+GGG + chr5_1:32717555-32717574 None:intergenic 30.0%
TCTCTAGATTATCTCTGTAA+TGG + chr5_1:32717556-32717575 None:intergenic 30.0%
AAGAAATCTAGCAACTCATT+TGG + chr5_1:32717650-32717669 None:intergenic 30.0%
! TTGCTAGATTTCTTTGAAGA+GGG - chr5_1:32717656-32717675 Msa0728230:intron 30.0%
AAGTAAGAAAAGATGGAATG+TGG - chr5_1:32717807-32717826 Msa0728230:intron 30.0%
! AATGCTTTTGTGATCAACAT+TGG - chr5_1:32717851-32717870 Msa0728230:intron 30.0%
GTCAATCAATCATATAAGTC+CGG + chr5_1:32717993-32718012 None:intergenic 30.0%
TTGTGCTAGATACAACTAGA+GGG + chr5_1:32715585-32715604 None:intergenic 35.0%
ATTGTGCTAGATACAACTAG+AGG + chr5_1:32715586-32715605 None:intergenic 35.0%
! AGTTAGTATTTTCTGCCACT+TGG + chr5_1:32716708-32716727 None:intergenic 35.0%
TACGGTAAAACATTGTGGTT+GGG + chr5_1:32717107-32717126 None:intergenic 35.0%
ATACGGTAAAACATTGTGGT+TGG + chr5_1:32717108-32717127 None:intergenic 35.0%
TATTTCCAGCTGATCAATCA+CGG - chr5_1:32717209-32717228 Msa0728230:intron 35.0%
AGAGTTCTTCAATCTATCTG+CGG - chr5_1:32717274-32717293 Msa0728230:intron 35.0%
!!! CGGAGGAGAAGAAATTTTTT+GGG - chr5_1:32717294-32717313 Msa0728230:intron 35.0%
CAGAAGAACACAAACTTGAA+TGG - chr5_1:32717363-32717382 Msa0728230:intron 35.0%
GGAATACTTGGAAACAAGTT+TGG + chr5_1:32717434-32717453 None:intergenic 35.0%
ATCGTTGAGTTTATGGCAAA+AGG - chr5_1:32717611-32717630 Msa0728230:intron 35.0%
AATCTAGCAACTCATTTGGT+TGG + chr5_1:32717646-32717665 None:intergenic 35.0%
! GTTGCTAGATTTCTTTGAAG+AGG - chr5_1:32717655-32717674 Msa0728230:intron 35.0%
AGTAATTCATCCTCATTGCT+TGG + chr5_1:32717685-32717704 None:intergenic 35.0%
!! TTCATTGAGTTGGAGAAGAA+TGG + chr5_1:32717774-32717793 None:intergenic 35.0%
CTCCAACTCAATGAAATTGA+AGG - chr5_1:32717779-32717798 Msa0728230:intron 35.0%
! TTCCATCTTTTCTTACTTGC+AGG + chr5_1:32717805-32717824 None:intergenic 35.0%
!! ATCACAAAAGCATTTGAGAG+TGG + chr5_1:32717845-32717864 None:intergenic 35.0%
AGTGAAACGTTTCTAATGAC+CGG - chr5_1:32717971-32717990 Msa0728230:intron 35.0%
GTTTGACAGATAATGACGAA+TGG - chr5_1:32718169-32718188 Msa0728230:intron 35.0%
CAATTAACGCAGAAAAAGAG+AGG - chr5_1:32718221-32718240 Msa0728230:CDS 35.0%
CAACTTTATTGAACACTGCA+GGG + chr5_1:32718324-32718343 None:intergenic 35.0%
AGTGTTCAATAAAGTTGGAG+TGG - chr5_1:32718327-32718346 Msa0728230:CDS 35.0%
AATCACACATTGATGTCTTG+AGG - chr5_1:32718392-32718411 Msa0728230:CDS 35.0%
TCAGACATGGTGAAGAATCT+TGG - chr5_1:32715472-32715491 Msa0728230:CDS 40.0%
TTTACTAGCTCCTGAACAGA+AGG + chr5_1:32715514-32715533 None:intergenic 40.0%
TAGATACAACTAGAGGGTCT+TGG + chr5_1:32715579-32715598 None:intergenic 40.0%
TCGATCATGCATGCAAAGAA+TGG - chr5_1:32715680-32715699 Msa0728230:CDS 40.0%
CGATCATGCATGCAAAGAAT+GGG - chr5_1:32715681-32715700 Msa0728230:CDS 40.0%
GATCATGCATGCAAAGAATG+GGG - chr5_1:32715682-32715701 Msa0728230:CDS 40.0%
! GGAAAAGTGTGATTCAAACC+TGG + chr5_1:32715714-32715733 None:intergenic 40.0%
! TGGGTTGAGAATATGGATGT+TGG + chr5_1:32716639-32716658 None:intergenic 40.0%
!! AGAGGTTTGGGTTGAGAATA+TGG + chr5_1:32716646-32716665 None:intergenic 40.0%
!! TAGTATTTTCTGCCACTTGG+CGG + chr5_1:32716705-32716724 None:intergenic 40.0%
! GGTTGGGTGTATCATGTTTT+TGG + chr5_1:32717091-32717110 None:intergenic 40.0%
!!! GCGGAGGAGAAGAAATTTTT+TGG - chr5_1:32717293-32717312 Msa0728230:intron 40.0%
CAAAAACCTGGTGATATGGA+GGG - chr5_1:32717317-32717336 Msa0728230:intron 40.0%
AAAAACCTGGTGATATGGAG+GGG - chr5_1:32717318-32717337 Msa0728230:intron 40.0%
TGTGACGATCGTTGAGTTTA+TGG - chr5_1:32717604-32717623 Msa0728230:intron 40.0%
!! TTGAGTCCAATGACTTGTTC+TGG + chr5_1:32717725-32717744 None:intergenic 40.0%
CTCAATCCTCATTCTGATGT+TGG - chr5_1:32717740-32717759 Msa0728230:intron 40.0%
GGCCTTCAATTTCATTGAGT+TGG + chr5_1:32717784-32717803 None:intergenic 40.0%
GCATTTGAGAGTGGCTTAAT+AGG + chr5_1:32717836-32717855 None:intergenic 40.0%
AGCACTGTTAAATGTGGCAA+TGG + chr5_1:32718251-32718270 None:intergenic 40.0%
CAGTCTAGCACTGTTAAATG+TGG + chr5_1:32718257-32718276 None:intergenic 40.0%
GCTAGACTGAATGCAATTCT+TGG - chr5_1:32718268-32718287 Msa0728230:CDS 40.0%
CCAACTTTATTGAACACTGC+AGG + chr5_1:32718325-32718344 None:intergenic 40.0%
CCTGCAGTGTTCAATAAAGT+TGG - chr5_1:32718322-32718341 Msa0728230:CDS 40.0%
TATTTCTCACGCAAGCTTGA+AGG - chr5_1:32718367-32718386 Msa0728230:CDS 40.0%
ACACATTGATGTCTTGAGGA+TGG - chr5_1:32718396-32718415 Msa0728230:CDS 40.0%
TGTCTTGAGGATGGAAAACA+AGG - chr5_1:32718405-32718424 Msa0728230:CDS 40.0%
GTCTTGAGGATGGAAAACAA+GGG - chr5_1:32718406-32718425 Msa0728230:CDS 40.0%
GAATCTTGGAACCTCTCTGA+CGG - chr5_1:32715486-32715505 Msa0728230:CDS 45.0%
!! CGTTCTGGAACTTTGGTGAT+GGG + chr5_1:32715541-32715560 None:intergenic 45.0%
!! ACGTTCTGGAACTTTGGTGA+TGG + chr5_1:32715542-32715561 None:intergenic 45.0%
CAAAGAATGGGGTTTCTTCC+AGG - chr5_1:32715693-32715712 Msa0728230:CDS 45.0%
TCACGGAGTCGATCTATCAT+TGG - chr5_1:32717226-32717245 Msa0728230:intron 45.0%
GTTCTTCAATCTATCTGCGG+AGG - chr5_1:32717277-32717296 Msa0728230:intron 45.0%
TGGGCAAAAACCTGGTGATA+TGG - chr5_1:32717313-32717332 Msa0728230:intron 45.0%
GCAAAAACCTGGTGATATGG+AGG - chr5_1:32717316-32717335 Msa0728230:intron 45.0%
CTGAATGGTTGGGGAATACT+TGG + chr5_1:32717446-32717465 None:intergenic 45.0%
CAAGTATTCCCCAACCATTC+AGG - chr5_1:32717444-32717463 Msa0728230:intron 45.0%
! ACTTGTTCTGGTTGAGGACA+TGG + chr5_1:32717713-32717732 None:intergenic 45.0%
!! CCAATGACTTGTTCTGGTTG+AGG + chr5_1:32717719-32717738 None:intergenic 45.0%
CCTCAACCAGAACAAGTCAT+TGG - chr5_1:32717716-32717735 Msa0728230:intron 45.0%
! AGAGCACCAACATCAGAATG+AGG + chr5_1:32717749-32717768 None:intergenic 45.0%
GGCCTGCAAGTAAGAAAAGA+TGG - chr5_1:32717800-32717819 Msa0728230:intron 45.0%
CAACATTGGAGACATGCTAG+AGG - chr5_1:32717865-32717884 Msa0728230:intron 45.0%
CTTTCAGGAGTAACAAGGCT+TGG + chr5_1:32718301-32718320 None:intergenic 45.0%
!!! ATTTTACTTATATTTTTATT+TGG + chr5_1:32715819-32715838 None:intergenic 5.0%
!! TAAAACTTTAAATTAATTTA+AGG + chr5_1:32715968-32715987 None:intergenic 5.0%
CACTTGGCGGTTTAGAGGTT+TGG + chr5_1:32716692-32716711 None:intergenic 50.0%
CAAACCTCTAAACCGCCAAG+TGG - chr5_1:32716690-32716709 Msa0728230:intron 50.0%
AAGAGGGAAGCCAAGCAATG+AGG - chr5_1:32717672-32717691 Msa0728230:intron 50.0%
! TGTTCTGGTTGAGGACATGG+AGG + chr5_1:32717710-32717729 None:intergenic 50.0%
CAGGGCTTTCAGGAGTAACA+AGG + chr5_1:32718306-32718325 None:intergenic 50.0%
TTGAACACTGCAGGGCTTTC+AGG + chr5_1:32718316-32718335 None:intergenic 50.0%
!! AACAGAAGGCACCGTCAGAG+AGG + chr5_1:32715500-32715519 None:intergenic 55.0%
TCTGACGGTGCCTTCTGTTC+AGG - chr5_1:32715501-32715520 Msa0728230:CDS 55.0%
! TCTGCCACTTGGCGGTTTAG+AGG + chr5_1:32716697-32716716 None:intergenic 55.0%
CGACTCCGTGATTGATCAGC+TGG + chr5_1:32717217-32717236 None:intergenic 55.0%
CCAAACCCCTCCATATCACC+AGG + chr5_1:32717326-32717345 None:intergenic 55.0%
CCTGGTGATATGGAGGGGTT+TGG - chr5_1:32717323-32717342 Msa0728230:intron 55.0%
!! GGAGTAACAAGGCTTGGTGC+TGG + chr5_1:32718295-32718314 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 32715460 32718432 32715460 ID=Msa0728230;Name=Msa0728230
chr5_1 mRNA 32715460 32718432 32715460 ID=Msa0728230-mRNA-1;Parent=Msa0728230;Name=Msa0728230-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|4|0|308
chr5_1 exon 32718178 32718432 32718178 ID=Msa0728230-mRNA-1:exon:10493;Parent=Msa0728230-mRNA-1
chr5_1 exon 32716427 32716674 32716427 ID=Msa0728230-mRNA-1:exon:10492;Parent=Msa0728230-mRNA-1
chr5_1 exon 32716162 32716330 32716162 ID=Msa0728230-mRNA-1:exon:10491;Parent=Msa0728230-mRNA-1
chr5_1 exon 32715460 32715714 32715460 ID=Msa0728230-mRNA-1:exon:10490;Parent=Msa0728230-mRNA-1
chr5_1 CDS 32718178 32718432 32718178 ID=Msa0728230-mRNA-1:cds;Parent=Msa0728230-mRNA-1
chr5_1 CDS 32716427 32716674 32716427 ID=Msa0728230-mRNA-1:cds;Parent=Msa0728230-mRNA-1
chr5_1 CDS 32716162 32716330 32716162 ID=Msa0728230-mRNA-1:cds;Parent=Msa0728230-mRNA-1
chr5_1 CDS 32715460 32715714 32715460 ID=Msa0728230-mRNA-1:cds;Parent=Msa0728230-mRNA-1
Gene Sequence

>Msa0728230

CAAGCTATGGATTCAGACATGGTGAAGAATCTTGGAACCTCTCTGACGGTGCCTTCTGTTCAGGAGCTAGTAAAGCAACCCATCACCAAAGTTCCAGAACGTTATATTCAGCAAAACCAAGACCCTCTAGTTGTATCTAGCACAATCTCTTCACAACAAGTACCAATCATCGATTTGAATAAGTTGTTATCTGAAGAAGATGGAACTGAACTACAAAAATTCGATCATGCATGCAAAGAATGGGGTTTCTTCCAGCTGATCAATCACGGAGTCGATCTATCATTGGTTGAAAATTTCAAAAAACATGTTCAAGAGTTCTTCAATCTATCTGCGGAGGAGAAGAAATTTTTTGGGCAAAAACCTGGTGATATGGAGGGGTTTGGTCAGATGTTTGTTGTATCAGAAGAACACAAACTTGAATGGGCAGATTTATTCTACATTGTCACTCTTCCAACATATATAAGAAATCCAAACTTGTTTCCAAGTATTCCCCAACCATTCAGAGATAATCTAGAGATGTATTCTATAGAGATGAAAAAATTGTGTGTGACGATCGTTGAGTTTATGGCAAAAGGATTAAAGATCCAACCAAATGAGTTGCTAGATTTCTTTGAAGAGGGAAGCCAAGCAATGAGGATGAATTACTATCCTCCATGTCCTCAACCAGAACAAATAATGACGAATGGTATTTATCGAAGTATTGAACATCGAGCAACAATTAACGCAGAAAAAGAGAGGATTTCCATTGCCACATTTAACAGTGCTAGACTGAATGCAATTCTTGGTCCAGCACCAAGCCTTGTTACTCCTGAAAGCCCTGCAGTGTTCAATAAAGTTGGAGTGGAAGATTTCTTTAAAGCATATTTCTCACGCAAGCTTGAAGGAAAATCACACATTGATGTCTTGAGGATGGAAAACAAGGGATAA

Protein sequence

>Msa0728230

QAMDSDMVKNLGTSLTVPSVQELVKQPITKVPERYIQQNQDPLVVSSTISSQQVPIIDLNKLLSEEDGTELQKFDHACKEWGFFQLINHGVDLSLVENFKKHVQEFFNLSAEEKKFFGQKPGDMEGFGQMFVVSEEHKLEWADLFYIVTLPTYIRNPNLFPSIPQPFRDNLEMYSIEMKKLCVTIVEFMAKGLKIQPNELLDFFEEGSQAMRMNYYPPCPQPEQIMTNGIYRSIEHRATINAEKERISIATFNSARLNAILGPAPSLVTPESPAVFNKVGVEDFFKAYFSRKLEGKSHIDVLRMENKG*