AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0992190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0992190 MtrunA17_Chr6g0473931 91.099 191 17 0 4 194 8 198 6.75e-113 320
Msa0992190 MtrunA17_Chr6g0473961 78.351 194 32 4 4 194 29 215 7.28e-105 300
Msa0992190 MtrunA17_Chr6g0473941 86.567 201 17 2 4 194 8 208 2.10e-103 296
Msa0992190 MtrunA17_Chr6g0474001 76.471 187 37 3 4 188 29 210 7.88e-101 292
Msa0992190 MtrunA17_Chr6g0473971 79.255 188 31 3 4 188 29 211 5.24e-97 281
Msa0992190 MtrunA17_Chr6g0473781 71.000 200 45 4 4 194 32 227 1.26e-95 277
Msa0992190 MtrunA17_Chr6g0473981 76.064 188 36 4 4 188 29 210 5.86e-93 271
Msa0992190 MtrunA17_Chr6g0473881 71.134 194 42 3 4 189 85 272 1.74e-89 265
Msa0992190 MtrunA17_Chr6g0473741 72.396 192 48 2 4 194 41 228 2.33e-88 259
Msa0992190 MtrunA17_Chr1g0203861 62.105 190 62 2 7 194 22 203 3.03e-70 212
Msa0992190 MtrunA17_Chr6g0473861 51.852 243 66 4 3 194 37 279 4.85e-69 211
Msa0992190 MtrunA17_Chr5g0398081 46.635 208 81 5 7 194 27 224 1.21e-53 171
Msa0992190 MtrunA17_Chr5g0398091 48.500 200 87 5 7 194 32 227 1.56e-50 162
Msa0992190 MtrunA17_Chr5g0398061 48.718 195 84 5 12 194 32 222 1.10e-49 160
Msa0992190 MtrunA17_Chr6g0473771 75.258 97 24 0 6 102 20 116 2.43e-48 153
Msa0992190 MtrunA17_Chr4g0057231 71.287 101 26 2 7 104 22 122 6.88e-43 140
Msa0992190 MtrunA17_Chr6g0473791 89.041 73 8 0 4 76 32 104 4.64e-42 138
Msa0992190 MtrunA17_Chr7g0265851 46.914 162 78 3 16 169 11 172 6.93e-35 122
Msa0992190 MtrunA17_Chr8g0334801 68.750 80 25 0 24 103 47 126 1.06e-34 121
Msa0992190 MtrunA17_Chr3g0140161 55.238 105 46 1 24 128 38 141 5.71e-34 119
Msa0992190 MtrunA17_Chr2g0321071 39.894 188 92 6 23 192 41 225 7.59e-33 117
Msa0992190 MtrunA17_Chr7g0232261 58.511 94 32 1 17 103 42 135 1.17e-31 114
Msa0992190 MtrunA17_Chr7g0275841 59.091 88 36 0 16 103 15 102 1.03e-30 110
Msa0992190 MtrunA17_Chr5g0399441 62.025 79 30 0 25 103 24 102 1.11e-30 110
Msa0992190 MtrunA17_Chr8g0340311 63.291 79 29 0 25 103 43 121 9.23e-30 108
Msa0992190 MtrunA17_Chr8g0390091 56.566 99 43 0 19 117 27 125 1.47e-29 109
Msa0992190 MtrunA17_Chr2g0331231 50.926 108 47 2 2 103 8 115 4.30e-29 107
Msa0992190 MtrunA17_Chr6g0486701 62.821 78 29 0 26 103 41 118 4.41e-29 107
Msa0992190 MtrunA17_Chr8g0346741 56.383 94 38 1 13 103 23 116 2.02e-28 104
Msa0992190 MtrunA17_Chr4g0055951 61.538 78 30 0 26 103 71 148 7.95e-27 102
Msa0992190 MtrunA17_Chr4g0057241 58.228 79 32 1 25 103 11 88 3.77e-26 98.6
Msa0992190 MtrunA17_Chr4g0017851 56.627 83 36 0 28 110 117 199 1.45e-24 97.8
Msa0992190 MtrunA17_Chr6g0486711 61.628 86 33 0 25 110 45 130 4.71e-24 94.7
Msa0992190 MtrunA17_Chr1g0146191 58.696 92 34 1 16 103 30 121 4.48e-23 92.8
Msa0992190 MtrunA17_Chr5g0396181 46.535 101 52 1 29 127 21 121 3.91e-20 83.6
Msa0992190 MtrunA17_Chr5g0396191 54.945 91 41 0 29 119 11 101 2.71e-19 81.3
Msa0992190 MtrunA17_Chr2g0295421 52.000 75 33 1 13 87 83 154 6.06e-18 79.0
Msa0992190 MtrunA17_Chr1g0179161 35.838 173 70 7 13 169 3 150 6.71e-18 77.4
Msa0992190 MtrunA17_Chr1g0150631 56.667 60 26 0 28 87 37 96 1.29e-17 77.8
Msa0992190 MtrunA17_Chr1g0203831 42.958 142 74 4 29 165 57 196 1.35e-17 77.0
Msa0992190 MtrunA17_Chr7g0221471 45.679 81 44 0 25 105 47 127 1.57e-17 76.3
Msa0992190 MtrunA17_Chr3g0134161 40.164 122 65 4 14 133 31 146 1.64e-17 76.3
Msa0992190 MtrunA17_Chr5g0437671 62.069 58 22 0 29 86 85 142 1.83e-17 79.3
Msa0992190 MtrunA17_Chr8g0382491 46.237 93 45 2 13 100 95 187 2.81e-17 77.8
Msa0992190 MtrunA17_Chr1g0153151 37.374 99 59 1 29 127 44 139 9.85e-17 74.3
Msa0992190 MtrunA17_Chr2g0334031 51.471 68 33 0 17 84 105 172 1.11e-16 77.0
Msa0992190 MtrunA17_Chr3g0115631 59.322 59 24 0 28 86 149 207 1.73e-16 76.3
Msa0992190 MtrunA17_Chr7g0221501 45.783 83 45 0 25 107 47 129 1.95e-16 73.6
Msa0992190 MtrunA17_Chr3g0136551 44.706 85 47 0 29 113 65 149 2.07e-16 75.1
Msa0992190 MtrunA17_Chr1g0196781 55.556 63 28 0 24 86 147 209 2.08e-16 75.9
Msa0992190 MtrunA17_Chr2g0301171 30.814 172 109 4 28 194 18 184 2.25e-16 73.9
Msa0992190 MtrunA17_Chr1g0150691 50.000 66 33 0 22 87 15 80 2.67e-16 73.9
Msa0992190 MtrunA17_Chr5g0425561 59.322 59 24 0 28 86 172 230 2.67e-16 75.9
Msa0992190 MtrunA17_Chr1g0195151 50.000 68 34 0 19 86 67 134 2.76e-16 75.1
Msa0992190 MtrunA17_Chr1g0150671 43.478 92 48 1 28 115 45 136 2.88e-16 75.1
Msa0992190 MtrunA17_Chr8g0375031 58.929 56 23 0 29 84 125 180 4.42e-16 73.6
Msa0992190 MtrunA17_Chr2g0323171 49.367 79 39 1 29 106 65 143 4.97e-16 72.8
Msa0992190 MtrunA17_Chr2g0301191 44.706 85 47 0 28 112 18 102 5.07e-16 73.2
Msa0992190 MtrunA17_Chr8g0383591 56.667 60 26 0 29 88 145 204 5.96e-16 74.3
Msa0992190 MtrunA17_Chr2g0324131 59.322 59 24 0 28 86 217 275 6.32e-16 75.1
Msa0992190 MtrunA17_Chr5g0401871 38.835 103 56 1 29 131 25 120 7.54e-16 72.0
Msa0992190 MtrunA17_Chr4g0044911 60.714 56 22 0 29 84 96 151 8.79e-16 72.8
Msa0992190 MtrunA17_Chr3g0099871 59.375 64 23 1 21 84 22 82 9.42e-16 72.8
Msa0992190 MtrunA17_Chr1g0150661 53.333 60 28 0 28 87 34 93 1.24e-15 72.4
Msa0992190 MtrunA17_Chr1g0158971 57.895 57 24 0 29 85 115 171 1.38e-15 73.6
Msa0992190 MtrunA17_Chr2g0316931 60.714 56 22 0 29 84 31 86 1.44e-15 71.6
Msa0992190 MtrunA17_Chr5g0437371 62.500 56 21 0 29 84 66 121 1.98e-15 73.2
Msa0992190 MtrunA17_Chr4g0044871 58.929 56 23 0 29 84 96 151 3.15e-15 71.2
Msa0992190 MtrunA17_Chr4g0044901 58.929 56 23 0 29 84 96 151 3.32e-15 71.2
Msa0992190 MtrunA17_Chr1g0186731 54.839 62 27 1 29 89 21 82 4.20e-15 68.9
Msa0992190 MtrunA17_Chr3g0136541 44.578 83 46 0 31 113 42 124 4.29e-15 71.2
Msa0992190 MtrunA17_Chr8g0344961 51.515 66 32 0 19 84 114 179 4.34e-15 72.4
Msa0992190 MtrunA17_Chr4g0023411 58.929 56 23 0 29 84 65 120 4.53e-15 70.1
Msa0992190 MtrunA17_Chr7g0225131 50.000 66 30 1 22 87 22 84 5.42e-15 67.4
Msa0992190 MtrunA17_Chr4g0044881 58.929 56 23 0 29 84 114 169 5.55e-15 70.9
Msa0992190 MtrunA17_Chr2g0283181 52.174 69 32 1 17 84 137 205 7.92e-15 70.9
Msa0992190 MtrunA17_Chr7g0257911 60.714 56 22 0 29 84 31 86 8.35e-15 70.9
Msa0992190 MtrunA17_Chr4g0026881 42.697 89 45 2 1 88 74 157 1.07e-14 70.1
Msa0992190 MtrunA17_Chr2g0297331 56.452 62 26 1 29 89 14 75 1.72e-14 67.4
Msa0992190 MtrunA17_Chr4g0063751 57.143 56 24 0 29 84 7 62 2.33e-14 68.6
Msa0992190 MtrunA17_Chr3g0137174 60.714 56 22 0 29 84 8 63 3.95e-14 67.4
Msa0992190 MtrunA17_Chr2g0282651 57.143 56 24 0 29 84 70 125 4.61e-14 68.6
Msa0992190 MtrunA17_Chr1g0170531 56.140 57 24 1 29 84 89 145 4.72e-14 68.2
Msa0992190 MtrunA17_Chr4g0002631 52.778 72 31 1 29 100 8 76 5.17e-14 67.4
Msa0992190 MtrunA17_Chr5g0396911 50.667 75 27 2 16 84 97 167 5.40e-14 68.9
Msa0992190 MtrunA17_Chr4g0003421 57.143 56 24 0 29 84 40 95 6.57e-14 67.8
Msa0992190 MtrunA17_Chr2g0333011 53.333 60 28 0 29 88 7 66 6.74e-14 66.6
Msa0992190 MtrunA17_Chr1g0189941 50.000 70 35 0 18 87 13 82 8.90e-14 66.2
Msa0992190 MtrunA17_Chr2g0301181 42.353 85 49 0 28 112 18 102 9.29e-14 67.4
Msa0992190 MtrunA17_Chr4g0055781 57.895 57 23 1 29 84 102 158 1.09e-13 67.4
Msa0992190 MtrunA17_Chr1g0184081 56.140 57 24 1 29 84 21 77 1.12e-13 65.5
Msa0992190 MtrunA17_Chr2g0282621 58.929 56 23 0 29 84 15 70 1.14e-13 65.9
Msa0992190 MtrunA17_Chr1g0186671 57.895 57 23 1 29 84 19 75 1.47e-13 64.7
Msa0992190 MtrunA17_Chr3g0126321 33.871 124 82 0 29 152 113 236 1.62e-13 67.8
Msa0992190 MtrunA17_Chr4g0055801 46.250 80 42 1 6 84 131 210 1.83e-13 67.4
Msa0992190 MtrunA17_Chr3g0114761 48.352 91 39 3 29 113 25 113 5.49e-13 65.1
Msa0992190 MtrunA17_Chr5g0438831 48.684 76 36 1 9 84 29 101 8.91e-13 65.1
Msa0992190 MtrunA17_Chr4g0046161 47.826 69 35 1 17 84 45 113 1.12e-12 62.0
Msa0992190 MtrunA17_Chr5g0438801 41.414 99 58 0 29 127 51 149 1.14e-12 65.1
Msa0992190 MtrunA17_Chr8g0367911 53.571 56 26 0 29 84 44 99 1.45e-12 64.7
Msa0992190 MtrunA17_Chr5g0396171 47.541 61 32 0 31 91 26 86 1.53e-12 61.2
Msa0992190 MtrunA17_Chr4g0062551 47.458 59 31 0 29 87 53 111 2.17e-12 62.0
Msa0992190 MtrunA17_Chr1g0186681 50.820 61 28 1 26 84 16 76 2.40e-12 61.6
Msa0992190 MtrunA17_Chr7g0253424 44.595 74 40 1 29 102 39 111 2.60e-12 63.9
Msa0992190 MtrunA17_Chr5g0432821 48.333 60 31 0 25 84 120 179 2.98e-12 63.9
Msa0992190 MtrunA17_Chr4g0026931 44.706 85 41 3 5 88 112 191 3.18e-12 63.5
Msa0992190 MtrunA17_Chr1g0196871 51.613 62 27 2 24 84 13 72 3.49e-12 60.1
Msa0992190 MtrunA17_Chr8g0387801 46.914 81 34 2 13 84 82 162 6.16e-12 63.2
Msa0992190 MtrunA17_Chr4g0062161 47.458 59 31 0 29 87 53 111 6.55e-12 62.0
Msa0992190 MtrunA17_Chr8g0335331 52.632 57 26 1 29 84 125 181 7.59e-12 61.6
Msa0992190 MtrunA17_Chr6g0461271 47.222 72 37 1 17 88 22 92 8.01e-12 62.8
Msa0992190 MtrunA17_Chr8g0378811 43.421 76 40 2 29 102 55 129 1.20e-11 62.0
Msa0992190 MtrunA17_Chr4g0055761 56.140 57 24 1 29 84 145 201 1.24e-11 62.0
Msa0992190 MtrunA17_Chr5g0412641 55.357 56 25 0 29 84 46 101 1.38e-11 62.4
Msa0992190 MtrunA17_Chr2g0283171 52.632 57 26 1 29 84 63 119 1.51e-11 60.1
Msa0992190 MtrunA17_Chr8g0335311 52.632 57 26 1 29 84 96 152 1.52e-11 60.8
Msa0992190 MtrunA17_Chr7g0250721 52.632 57 26 1 29 84 61 117 1.69e-11 60.8
Msa0992190 MtrunA17_Chr7g0250731 52.632 57 26 1 29 84 61 117 1.86e-11 60.5
Msa0992190 MtrunA17_Chr8g0350701 52.727 55 26 0 31 85 29 83 1.90e-11 61.6
Msa0992190 MtrunA17_Chr7g0217991 43.529 85 39 2 13 97 29 104 2.25e-11 62.0
Msa0992190 MtrunA17_Chr3g0129421 54.795 73 32 1 29 100 170 242 2.59e-11 61.6
Msa0992190 MtrunA17_Chr7g0261151 54.386 57 25 1 29 84 20 76 3.15e-11 58.5
Msa0992190 MtrunA17_Chr6g0453661 51.786 56 27 0 29 84 38 93 5.23e-11 60.8
Msa0992190 MtrunA17_Chr7g0252381 47.887 71 34 1 29 99 42 109 6.30e-11 60.1
Msa0992190 MtrunA17_Chr1g0183961 52.857 70 31 2 29 97 27 95 6.87e-11 58.2
Msa0992190 MtrunA17_Chr7g0261101 54.386 57 25 1 29 84 20 76 7.61e-11 57.8
Msa0992190 MtrunA17_Chr5g0396301 48.333 60 29 1 29 86 18 77 8.43e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0992190 AT4G25470.1 56.345 197 70 5 6 194 28 216 7.83e-69 209
Msa0992190 AT4G25480.1 56.853 197 67 4 7 194 29 216 2.38e-64 197
Msa0992190 AT5G51990.1 54.040 198 76 5 6 194 31 222 7.70e-63 194
Msa0992190 AT4G25490.1 56.566 198 66 5 7 194 26 213 1.36e-61 191
Msa0992190 AT1G12610.1 49.000 200 90 3 7 194 8 207 2.96e-55 174
Msa0992190 AT1G63030.2 49.189 185 76 3 12 194 13 181 2.45e-54 171
Msa0992190 AT1G63030.1 49.189 185 76 3 12 194 13 181 2.45e-54 171
Msa0992190 AT5G25810.1 60.638 94 36 1 18 110 24 117 5.89e-34 120
Msa0992190 AT5G11590.1 46.324 136 73 0 25 160 47 182 1.32e-32 117
Msa0992190 AT2G44940.1 60.215 93 37 0 18 110 89 181 1.28e-31 116
Msa0992190 AT4G32800.1 53.271 107 44 1 16 116 6 112 1.78e-31 114
Msa0992190 AT2G35700.1 63.750 80 29 0 24 103 40 119 6.83e-31 112
Msa0992190 AT2G36450.1 40.437 183 102 4 17 194 3 183 2.02e-30 110
Msa0992190 AT4G16750.1 52.427 103 44 1 6 103 12 114 2.33e-29 107
Msa0992190 AT3G16280.1 63.291 79 29 0 25 103 57 135 3.01e-29 108
Msa0992190 AT3G16280.2 63.291 79 29 0 25 103 75 153 4.59e-29 108
Msa0992190 AT1G01250.1 61.250 80 31 0 24 103 40 119 6.08e-29 106
Msa0992190 AT5G52020.1 44.000 175 89 5 25 194 61 231 4.73e-28 105
Msa0992190 AT3G60490.1 59.756 82 32 1 23 103 64 145 9.08e-27 102
Msa0992190 AT2G25820.1 63.158 76 28 0 28 103 25 100 1.52e-26 101
Msa0992190 AT1G71450.1 48.113 106 55 0 28 133 23 128 3.91e-24 94.0
Msa0992190 AT1G33760.1 56.180 89 39 0 29 117 20 108 5.52e-21 85.9
Msa0992190 AT1G21910.1 47.000 100 32 2 29 114 50 142 9.57e-21 86.3
Msa0992190 AT2G47520.1 29.375 160 93 4 5 161 23 165 2.46e-20 84.0
Msa0992190 AT1G77200.1 61.039 77 30 0 27 103 41 117 7.04e-20 84.3
Msa0992190 AT1G12630.1 40.782 179 96 3 25 194 15 192 7.19e-19 80.5
Msa0992190 AT1G46768.3 58.730 63 25 1 24 86 27 88 1.49e-18 78.6
Msa0992190 AT1G46768.1 58.730 63 25 1 24 86 27 88 1.57e-18 78.6
Msa0992190 AT1G46768.2 58.730 63 25 1 24 86 27 88 1.57e-18 78.6
Msa0992190 AT4G06746.1 43.333 90 46 1 1 90 13 97 2.19e-18 78.2
Msa0992190 AT4G13620.1 61.017 59 23 0 28 86 231 289 2.37e-18 82.0
Msa0992190 AT3G16770.1 55.556 72 28 1 15 86 69 136 4.75e-18 79.7
Msa0992190 AT2G22200.1 53.333 75 33 1 28 100 70 144 5.83e-18 79.7
Msa0992190 AT4G39780.1 48.780 82 40 1 3 84 69 148 9.41e-18 79.3
Msa0992190 AT1G22190.1 54.795 73 31 1 14 86 70 140 9.74e-18 79.0
Msa0992190 AT3G11020.1 52.564 78 37 0 23 100 72 149 1.21e-17 79.7
Msa0992190 AT5G21960.1 48.810 84 43 0 27 110 5 88 2.52e-17 77.0
Msa0992190 AT5G65130.1 53.247 77 34 1 14 88 94 170 2.99e-17 77.8
Msa0992190 AT5G65130.2 53.247 77 34 1 14 88 96 172 3.00e-17 77.8
Msa0992190 AT1G78080.1 47.674 86 42 2 1 86 127 209 7.07e-17 77.4
Msa0992190 AT2G33710.1 47.561 82 38 1 24 100 65 146 7.51e-17 75.9
Msa0992190 AT2G33710.2 47.561 82 38 1 24 100 65 146 9.80e-17 75.9
Msa0992190 AT4G36900.1 56.667 60 26 0 25 84 26 85 1.03e-16 75.1
Msa0992190 AT3G50260.1 35.537 121 66 2 22 142 14 122 1.04e-16 73.9
Msa0992190 AT1G74930.1 45.349 86 47 0 29 114 21 106 1.08e-16 75.1
Msa0992190 AT2G23340.1 39.423 104 58 1 29 132 28 126 2.81e-16 73.6
Msa0992190 AT5G67190.1 57.143 56 24 0 29 84 21 76 3.58e-16 73.2
Msa0992190 AT5G05410.2 53.521 71 33 0 29 99 79 149 4.10e-16 75.1
Msa0992190 AT5G05410.1 52.778 72 34 0 29 100 79 150 4.75e-16 75.1
Msa0992190 AT1G19210.1 43.333 90 51 0 29 118 12 101 5.90e-16 72.8
Msa0992190 AT1G36060.1 61.404 57 22 0 28 84 142 198 1.20e-15 73.9
Msa0992190 AT4G28140.1 55.932 59 26 0 28 86 142 200 1.40e-15 73.6
Msa0992190 AT5G07580.1 50.633 79 36 2 23 100 106 182 1.51e-15 72.0
Msa0992190 AT2G20880.1 59.649 57 23 0 28 84 186 242 1.72e-15 73.6
Msa0992190 AT3G15210.1 50.000 82 32 2 29 101 25 106 1.76e-15 72.4
Msa0992190 AT5G44210.1 52.113 71 27 1 29 99 33 96 2.77e-15 71.2
Msa0992190 AT5G13330.1 54.688 64 27 1 25 88 37 98 2.81e-15 71.6
Msa0992190 AT1G75490.1 51.429 70 34 0 28 97 41 110 3.43e-15 71.2
Msa0992190 AT3G57600.1 51.389 72 35 0 13 84 12 83 3.83e-15 72.0
Msa0992190 AT5G61600.1 60.656 61 21 2 25 84 86 144 5.43e-15 71.2
Msa0992190 AT5G61890.1 54.688 64 27 1 25 88 88 149 5.61e-15 71.2
Msa0992190 AT5G64750.1 41.304 92 48 2 39 130 195 280 7.64e-15 72.0
Msa0992190 AT1G03800.1 51.471 68 30 1 17 84 44 108 1.12e-14 70.5
Msa0992190 AT5G51190.1 57.143 63 24 2 23 84 68 128 1.44e-14 69.7
Msa0992190 AT1G72360.3 44.737 76 42 0 9 84 54 129 1.88e-14 70.1
Msa0992190 AT1G15360.1 58.929 56 23 0 29 84 7 62 1.92e-14 68.9
Msa0992190 AT1G15360.2 58.929 56 23 0 29 84 7 62 1.92e-14 68.9
Msa0992190 AT1G72360.1 49.206 63 32 0 22 84 18 80 2.10e-14 68.9
Msa0992190 AT4G11140.1 41.935 93 41 2 29 114 87 173 2.19e-14 70.1
Msa0992190 AT5G47230.1 52.778 72 33 1 14 84 141 212 2.19e-14 70.5
Msa0992190 AT5G43410.1 55.000 60 26 1 26 84 12 71 2.63e-14 67.0
Msa0992190 AT4G27950.1 56.140 57 25 0 29 85 118 174 3.24e-14 70.1
Msa0992190 AT3G61630.1 46.835 79 36 1 29 107 105 177 4.60e-14 69.7
Msa0992190 AT1G71520.1 35.461 141 69 6 23 157 8 132 5.29e-14 66.6
Msa0992190 AT1G72360.2 49.206 63 32 0 22 84 69 131 5.76e-14 68.6
Msa0992190 AT5G25190.1 52.941 68 32 0 29 96 8 75 5.76e-14 67.4
Msa0992190 AT1G22810.1 39.785 93 41 2 29 113 14 99 6.01e-14 66.6
Msa0992190 AT3G23230.1 51.613 62 29 1 29 89 20 81 9.09e-14 65.9
Msa0992190 AT5G25390.2 55.357 56 25 0 29 84 7 62 9.15e-14 67.0
Msa0992190 AT1G43160.1 38.931 131 67 4 29 158 61 179 9.73e-14 67.0
Msa0992190 AT4G31060.1 41.463 82 44 1 7 84 1 82 1.10e-13 66.6
Msa0992190 AT2G40340.2 46.479 71 38 0 29 99 14 84 2.58e-13 67.0
Msa0992190 AT2G40340.5 46.479 71 38 0 29 99 14 84 2.58e-13 67.0
Msa0992190 AT2G40340.4 46.479 71 38 0 29 99 14 84 2.58e-13 67.0
Msa0992190 AT3G20310.1 53.226 62 29 0 23 84 21 82 2.80e-13 66.6
Msa0992190 AT2G40340.3 33.858 127 77 2 29 155 72 191 3.35e-13 67.0
Msa0992190 AT5G53290.1 54.386 57 26 0 29 85 125 181 4.39e-13 67.0
Msa0992190 AT5G18450.1 46.250 80 39 1 5 84 14 89 5.12e-13 66.6
Msa0992190 AT1G28370.1 55.357 56 25 0 29 84 20 75 5.23e-13 64.3
Msa0992190 AT1G28360.1 58.929 56 23 0 29 84 12 67 5.37e-13 65.1
Msa0992190 AT2G40340.1 46.479 71 38 0 29 99 72 142 5.81e-13 66.6
Msa0992190 AT2G40340.6 46.479 71 38 0 29 99 79 149 5.92e-13 66.6
Msa0992190 AT4G17490.1 48.780 82 37 3 6 84 114 193 6.30e-13 66.2
Msa0992190 AT1G28370.2 55.357 56 25 0 29 84 58 113 7.25e-13 64.7
Msa0992190 AT4G23750.2 52.632 57 27 0 29 85 122 178 1.03e-12 65.9
Msa0992190 AT4G23750.1 52.632 57 27 0 29 85 122 178 1.03e-12 65.9
Msa0992190 AT1G50640.1 57.143 56 24 0 29 84 28 83 1.47e-12 64.3
Msa0992190 AT5G47220.1 56.140 57 24 1 29 84 117 173 1.85e-12 64.3
Msa0992190 AT2G46310.1 51.786 56 27 0 29 84 99 154 2.12e-12 64.7
Msa0992190 AT5G19790.1 53.448 58 27 0 29 86 22 79 2.98e-12 63.9
Msa0992190 AT5G61590.1 52.500 80 35 2 19 97 99 176 3.62e-12 62.8
Msa0992190 AT1G12890.1 44.872 78 40 1 7 84 2 76 4.14e-12 63.2
Msa0992190 AT1G77640.1 45.556 90 43 1 29 112 43 132 1.05e-11 62.4
Msa0992190 AT4G17500.1 56.140 57 24 1 29 84 148 204 1.43e-11 62.0
Msa0992190 AT3G23240.1 50.000 58 28 1 29 85 82 139 1.46e-11 61.6
Msa0992190 AT1G24590.1 50.769 65 29 1 29 93 58 119 2.09e-11 62.0
Msa0992190 AT1G12980.1 55.357 56 25 0 29 84 57 112 2.55e-11 62.0
Msa0992190 AT2G44840.1 54.386 57 25 1 29 84 92 148 2.87e-11 60.8
Msa0992190 AT5G25390.1 51.786 56 24 1 29 84 7 59 3.64e-11 59.7
Msa0992190 AT5G07310.1 46.835 79 40 1 6 84 71 147 5.64e-11 60.5
Msa0992190 AT2G40350.2 48.214 56 29 0 29 84 74 129 6.07e-11 58.9
Msa0992190 AT2G40350.1 48.214 56 29 0 29 84 67 122 7.59e-11 58.5

Find 57 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATATATACATATGTTT+AGG 0.215595 6_4:+59803329 None:intergenic
GGAAGAGGAACTTAGATAAA+TGG 0.256718 6_4:+59803440 Msa0992190:CDS
ACGTTGCAGCGATGGCATTA+AGG 0.265866 6_4:+59803548 Msa0992190:CDS
TTTCTCCCTGCTGGTTTCTT+CGG 0.268369 6_4:-59803376 None:intergenic
CTAATATATACATATGTTTA+GGG 0.296079 6_4:+59803330 None:intergenic
TTCTCCCTGCTGGTTTCTTC+GGG 0.296529 6_4:-59803375 None:intergenic
AGCAGGGAGAAAGAAATTTA+AGG 0.304894 6_4:+59803387 Msa0992190:CDS
CAAATCCTAGTCTTCTTGTT+TGG 0.307227 6_4:-59803481 None:intergenic
TTAAATTTCTTTCTCCCTGC+TGG 0.331988 6_4:-59803385 None:intergenic
GCCAGAGTTGTGGAGGAATA+TGG 0.338237 6_4:+59803813 Msa0992190:CDS
CGTTGCAGCGATGGCATTAA+GGG 0.377499 6_4:+59803549 Msa0992190:CDS
TCGCTGCAACGTCGTGTGCT+CGG 0.389912 6_4:-59803537 None:intergenic
CGCTGCAACGTCGTGTGCTC+GGG 0.398592 6_4:-59803536 None:intergenic
AATGTCCCCTACACATAGTT+TGG 0.427502 6_4:+59803840 Msa0992190:CDS
CAAACAAGAAGACTAGGATT+TGG 0.429238 6_4:+59803482 Msa0992190:CDS
GAAGAGGAACTTAGATAAAT+GGG 0.434368 6_4:+59803441 Msa0992190:CDS
TGTATAGAGGTGTGAGGAAG+AGG 0.474025 6_4:+59803425 Msa0992190:CDS
CTGAAACAAAAGACATTCAA+AGG 0.491926 6_4:+59803632 Msa0992190:CDS
GTAGTCGTTAAAGTCTTGTC+TGG 0.505167 6_4:-59803685 None:intergenic
GCCATATTCCTCCACAACTC+TGG 0.506491 6_4:-59803814 None:intergenic
CATGCACCAAACTATGTGTA+GGG 0.511168 6_4:-59803846 None:intergenic
CGGGCAGCCATCTCAGCCGT+TGG 0.512810 6_4:-59803517 None:intergenic
GGCAGCTGCAGAAGCCGCTG+AGG 0.513356 6_4:+59803654 Msa0992190:CDS
TGTGGAAGTCGAAGAAGAAG+AGG 0.518171 6_4:+59803777 Msa0992190:CDS
AGCACACGACGTTGCAGCGA+TGG 0.528674 6_4:+59803540 Msa0992190:CDS
TACTGACATTGACACGGTTG+TGG 0.536605 6_4:+59803705 Msa0992190:CDS
TGTACAATTTCAAGAGGAAG+AGG 0.538906 6_4:+59803885 Msa0992190:CDS
TGTCGTTGCAGTCGAAGAAG+AGG 0.540894 6_4:+59803732 Msa0992190:CDS
AGTTGCCCGAAGAAACCAGC+AGG 0.545231 6_4:+59803370 Msa0992190:CDS
CGAGTCTGCAAAATTGAGAC+AGG 0.547018 6_4:-59803581 None:intergenic
AAGAAGACTAGGATTTGGCT+AGG 0.552639 6_4:+59803487 Msa0992190:CDS
TAAATGGGTGTGTGAAATGA+GGG 0.554317 6_4:+59803456 Msa0992190:CDS
TGAAACAAAAGACATTCAAA+GGG 0.555993 6_4:+59803633 Msa0992190:CDS
GTTTCAGAAGAGGCAGGAGT+AGG 0.561690 6_4:-59803616 None:intergenic
GTTTAGGGAGGGGCAATTAG+CGG 0.561963 6_4:+59803345 Msa0992190:CDS
TATATACATATGTTTAGGGA+GGG 0.562832 6_4:+59803334 None:intergenic
ATTTAAGGAGACTCGCCACC+CGG 0.564242 6_4:+59803402 Msa0992190:CDS
ATATACATATGTTTAGGGAG+GGG 0.565127 6_4:+59803335 None:intergenic
TCATGCACCAAACTATGTGT+AGG 0.576797 6_4:-59803847 None:intergenic
TTCCTCACACCTCTATACAC+CGG 0.578151 6_4:-59803421 None:intergenic
TCCTCACACCTCTATACACC+GGG 0.580421 6_4:-59803420 None:intergenic
GGGAACCAAACAAGAAGACT+AGG 0.587015 6_4:+59803476 Msa0992190:CDS
ATAAATGGGTGTGTGAAATG+AGG 0.599450 6_4:+59803455 Msa0992190:CDS
AAGAGGAAGAGGTATCGCTA+TGG 0.611105 6_4:+59803896 Msa0992190:CDS
AACGACTACTGACATTGACA+CGG 0.611733 6_4:+59803699 Msa0992190:CDS
TGTTGAATATGCCAGAGTTG+TGG 0.615027 6_4:+59803803 Msa0992190:CDS
ATATATACATATGTTTAGGG+AGG 0.634372 6_4:+59803333 None:intergenic
GTTGCAGCGATGGCATTAAG+GGG 0.638430 6_4:+59803550 Msa0992190:CDS
AGAAGACTAGGATTTGGCTA+GGG 0.661545 6_4:+59803488 Msa0992190:CDS
TTCTTCGACTGCAACGACAA+CGG 0.675808 6_4:-59803728 None:intergenic
GTCTGGTCTGAAAGCCTCAG+CGG 0.676858 6_4:-59803668 None:intergenic
ATGCACCAAACTATGTGTAG+GGG 0.684106 6_4:-59803845 None:intergenic
TGAATATGCCAGAGTTGTGG+AGG 0.686416 6_4:+59803806 Msa0992190:CDS
CAAAATTGAGACAGGCGTAG+CGG 0.688544 6_4:-59803573 None:intergenic
ACCCGGTGTATAGAGGTGTG+AGG 0.705873 6_4:+59803419 Msa0992190:CDS
TCACACCTCTATACACCGGG+TGG 0.726886 6_4:-59803417 None:intergenic
GTTGCCCGAAGAAACCAGCA+GGG 0.737979 6_4:+59803371 Msa0992190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TGAAACAAAAGACATTCAAA+GGG + chr6_4:59803633-59803652 Msa0992190:CDS 25.0%
!! TTTTGATGTACAATTTCAAG+AGG + chr6_4:59803879-59803898 Msa0992190:CDS 25.0%
GAAGAGGAACTTAGATAAAT+GGG + chr6_4:59803441-59803460 Msa0992190:CDS 30.0%
!! AATGTCTTTTGTTTCAGAAG+AGG - chr6_4:59803629-59803648 None:intergenic 30.0%
CTGAAACAAAAGACATTCAA+AGG + chr6_4:59803632-59803651 Msa0992190:CDS 30.0%
TTAAATTTCTTTCTCCCTGC+TGG - chr6_4:59803388-59803407 None:intergenic 35.0%
AGCAGGGAGAAAGAAATTTA+AGG + chr6_4:59803387-59803406 Msa0992190:CDS 35.0%
GGAAGAGGAACTTAGATAAA+TGG + chr6_4:59803440-59803459 Msa0992190:CDS 35.0%
ATAAATGGGTGTGTGAAATG+AGG + chr6_4:59803455-59803474 Msa0992190:CDS 35.0%
TAAATGGGTGTGTGAAATGA+GGG + chr6_4:59803456-59803475 Msa0992190:CDS 35.0%
! CAAATCCTAGTCTTCTTGTT+TGG - chr6_4:59803484-59803503 None:intergenic 35.0%
CAAACAAGAAGACTAGGATT+TGG + chr6_4:59803482-59803501 Msa0992190:CDS 35.0%
!! AGTGCTGAATATGTTTTGTG+TGG + chr6_4:59803759-59803778 Msa0992190:CDS 35.0%
TGTACAATTTCAAGAGGAAG+AGG + chr6_4:59803885-59803904 Msa0992190:CDS 35.0%
AAGAAGACTAGGATTTGGCT+AGG + chr6_4:59803487-59803506 Msa0992190:CDS 40.0%
AGAAGACTAGGATTTGGCTA+GGG + chr6_4:59803488-59803507 Msa0992190:CDS 40.0%
! CTGTCTCAATTTTGCAGACT+CGG + chr6_4:59803582-59803601 Msa0992190:CDS 40.0%
!! TCTTTTGTTTCAGAAGAGGC+AGG - chr6_4:59803625-59803644 None:intergenic 40.0%
! GTAGTCGTTAAAGTCTTGTC+TGG - chr6_4:59803688-59803707 None:intergenic 40.0%
AACGACTACTGACATTGACA+CGG + chr6_4:59803699-59803718 Msa0992190:CDS 40.0%
TGTTGAATATGCCAGAGTTG+TGG + chr6_4:59803803-59803822 Msa0992190:CDS 40.0%
AATGTCCCCTACACATAGTT+TGG + chr6_4:59803840-59803859 Msa0992190:CDS 40.0%
ATGCACCAAACTATGTGTAG+GGG - chr6_4:59803848-59803867 None:intergenic 40.0%
CATGCACCAAACTATGTGTA+GGG - chr6_4:59803849-59803868 None:intergenic 40.0%
TCATGCACCAAACTATGTGT+AGG - chr6_4:59803850-59803869 None:intergenic 40.0%
!! TTTCTCCCTGCTGGTTTCTT+CGG - chr6_4:59803379-59803398 None:intergenic 45.0%
TTCCTCACACCTCTATACAC+CGG - chr6_4:59803424-59803443 None:intergenic 45.0%
! TGTATAGAGGTGTGAGGAAG+AGG + chr6_4:59803425-59803444 Msa0992190:CDS 45.0%
GGGAACCAAACAAGAAGACT+AGG + chr6_4:59803476-59803495 Msa0992190:CDS 45.0%
! TTGGCTAGGGACTTTTCCAA+CGG + chr6_4:59803501-59803520 Msa0992190:CDS 45.0%
CAAAATTGAGACAGGCGTAG+CGG - chr6_4:59803576-59803595 None:intergenic 45.0%
CGAGTCTGCAAAATTGAGAC+AGG - chr6_4:59803584-59803603 None:intergenic 45.0%
!!! TCAATTTTGCAGACTCGGTG+TGG + chr6_4:59803587-59803606 Msa0992190:CDS 45.0%
TACTGACATTGACACGGTTG+TGG + chr6_4:59803705-59803724 Msa0992190:CDS 45.0%
TTCTTCGACTGCAACGACAA+CGG - chr6_4:59803731-59803750 None:intergenic 45.0%
TGTGGAAGTCGAAGAAGAAG+AGG + chr6_4:59803777-59803796 Msa0992190:CDS 45.0%
TGAATATGCCAGAGTTGTGG+AGG + chr6_4:59803806-59803825 Msa0992190:CDS 45.0%
!! AAGAGGAAGAGGTATCGCTA+TGG + chr6_4:59803896-59803915 Msa0992190:CDS 45.0%
GTTTAGGGAGGGGCAATTAG+CGG + chr6_4:59803345-59803364 Msa0992190:CDS 50.0%
!! TTCTCCCTGCTGGTTTCTTC+GGG - chr6_4:59803378-59803397 None:intergenic 50.0%
ATTTAAGGAGACTCGCCACC+CGG + chr6_4:59803402-59803421 Msa0992190:CDS 50.0%
TCCTCACACCTCTATACACC+GGG - chr6_4:59803423-59803442 None:intergenic 50.0%
! GACTTTTCCAACGGCTGAGA+TGG + chr6_4:59803510-59803529 Msa0992190:CDS 50.0%
ACGTTGCAGCGATGGCATTA+AGG + chr6_4:59803548-59803567 Msa0992190:CDS 50.0%
CGTTGCAGCGATGGCATTAA+GGG + chr6_4:59803549-59803568 Msa0992190:CDS 50.0%
GTTGCAGCGATGGCATTAAG+GGG + chr6_4:59803550-59803569 Msa0992190:CDS 50.0%
!!! ATTTTGCAGACTCGGTGTGG+AGG + chr6_4:59803590-59803609 Msa0992190:CDS 50.0%
GTTTCAGAAGAGGCAGGAGT+AGG - chr6_4:59803619-59803638 None:intergenic 50.0%
TGTCGTTGCAGTCGAAGAAG+AGG + chr6_4:59803732-59803751 Msa0992190:CDS 50.0%
GCCAGAGTTGTGGAGGAATA+TGG + chr6_4:59803813-59803832 Msa0992190:CDS 50.0%
GCCATATTCCTCCACAACTC+TGG - chr6_4:59803817-59803836 None:intergenic 50.0%
AGTTGCCCGAAGAAACCAGC+AGG + chr6_4:59803370-59803389 Msa0992190:CDS 55.0%
GTTGCCCGAAGAAACCAGCA+GGG + chr6_4:59803371-59803390 Msa0992190:CDS 55.0%
TCACACCTCTATACACCGGG+TGG - chr6_4:59803420-59803439 None:intergenic 55.0%
! ACCCGGTGTATAGAGGTGTG+AGG + chr6_4:59803419-59803438 Msa0992190:CDS 55.0%
GTCTGGTCTGAAAGCCTCAG+CGG - chr6_4:59803671-59803690 None:intergenic 55.0%
ACTCGCCACCCGGTGTATAG+AGG + chr6_4:59803412-59803431 Msa0992190:CDS 60.0%
TCGCTGCAACGTCGTGTGCT+CGG - chr6_4:59803540-59803559 None:intergenic 60.0%
AGCACACGACGTTGCAGCGA+TGG + chr6_4:59803540-59803559 Msa0992190:CDS 60.0%
CGCTGCAACGTCGTGTGCTC+GGG - chr6_4:59803539-59803558 None:intergenic 65.0%
CGGGCAGCCATCTCAGCCGT+TGG - chr6_4:59803520-59803539 None:intergenic 70.0%
GGCAGCTGCAGAAGCCGCTG+AGG + chr6_4:59803654-59803673 Msa0992190:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 59803343 59803927 59803343 ID=Msa0992190;Name=Msa0992190
chr6_4 mRNA 59803343 59803927 59803343 ID=Msa0992190-mRNA-1;Parent=Msa0992190;Name=Msa0992190-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|-1|0|1|-1|1|1|0|194
chr6_4 exon 59803343 59803927 59803343 ID=Msa0992190-mRNA-1:exon:11693;Parent=Msa0992190-mRNA-1
chr6_4 CDS 59803343 59803927 59803343 ID=Msa0992190-mRNA-1:cds;Parent=Msa0992190-mRNA-1
Gene Sequence

>Msa0992190

ATGTTTAGGGAGGGGCAATTAGCGGCAAGTTGCCCGAAGAAACCAGCAGGGAGAAAGAAATTTAAGGAGACTCGCCACCCGGTGTATAGAGGTGTGAGGAAGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAACCAAACAAGAAGACTAGGATTTGGCTAGGGACTTTTCCAACGGCTGAGATGGCTGCCCGAGCACACGACGTTGCAGCGATGGCATTAAGGGGCCGCTACGCCTGTCTCAATTTTGCAGACTCGGTGTGGAGGCTTCCTACTCCTGCCTCTTCTGAAACAAAAGACATTCAAAGGGCAGCTGCAGAAGCCGCTGAGGCTTTCAGACCAGACAAGACTTTAACGACTACTGACATTGACACGGTTGTGGCCGTTGTCGTTGCAGTCGAAGAAGAGGAAGAAGTGCTGAATATGTTTTGTGTGGAAGTCGAAGAAGAAGAGGAAGTGTTGAATATGCCAGAGTTGTGGAGGAATATGGCACTAATGTCCCCTACACATAGTTTGGTGCATGAGTATGAAGATTTTGATGTACAATTTCAAGAGGAAGAGGTATCGCTATGGAACTTCTAA
Protein sequence

>Msa0992190

MFREGQLAASCPKKPAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPTPASSETKDIQRAAAEAAEAFRPDKTLTTTDIDTVVAVVVAVEEEEEVLNMFCVEVEEEEEVLNMPELWRNMALMSPTHSLVHEYEDFDVQFQEEEVSLWNF*