AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0887100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0887100 MtrunA17_Chr6g0466691 88.148 270 16 2 1 270 1 254 8.67e-168 464
Msa0887100 MtrunA17_Chr2g0316751 52.709 203 88 3 75 270 70 271 2.58e-64 202
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0887100 AT3G15110.1 42.066 271 138 6 8 268 5 266 3.92e-58 186

Find 52 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTTTGTTGCTTTATTC+TGG 0.170230 6_1:-48135810 Msa0887100:CDS
GGAGGTTTGTGAAGAGAAAT+TGG 0.266914 6_1:+48138806 None:intergenic
GAATAGCACAAAAGGACTTA+TGG 0.287634 6_1:-48137591 Msa0887100:CDS
TACTTCTTGAGAAGGATTAA+TGG 0.287749 6_1:+48138687 None:intergenic
TGGTGTGTGGTGATTGAAAT+AGG 0.300930 6_1:+48138784 None:intergenic
AGAAATTATCTGAAATTGTT+TGG 0.312877 6_1:+48137441 None:intergenic
CACTTCAGAACGGTAATAAA+TGG 0.313115 6_1:-48135873 Msa0887100:intron
ATTTGTGGAAATTATTATAA+TGG 0.320700 6_1:+48138737 None:intergenic
ACCTTATGGTGATTGTTATC+TGG 0.328009 6_1:+48135982 None:intergenic
AAACATTATGCTCATGTATA+AGG 0.330276 6_1:+48135575 None:intergenic
GTGTATGGAATAAACTCTTT+TGG 0.353719 6_1:-48135828 Msa0887100:CDS
ACTTGATGACCCTTTCTCAT+AGG 0.363596 6_1:+48135770 None:intergenic
AACAATTTCAGATAATTTCT+CGG 0.364342 6_1:-48137438 Msa0887100:intron
TTTGATCCTGCGCTGGATAG+TGG 0.365094 6_1:+48138528 None:intergenic
GCTCCTAACAATGCTTTATC+TGG 0.378868 6_1:+48137533 None:intergenic
TCACCAGATAAAGCATTGTT+AGG 0.382378 6_1:-48137536 Msa0887100:CDS
ATTGTGTTAATATTAAATTA+TGG 0.391333 6_1:+48135510 None:intergenic
AATAGCACAAAAGGACTTAT+GGG 0.391794 6_1:-48137590 Msa0887100:CDS
GAGGATTAATTGTGGATTTG+TGG 0.395724 6_1:+48138722 None:intergenic
GGACAACACTGATGGTTACT+TGG 0.403683 6_1:+48138581 None:intergenic
AGCATTGTTAGGAGCAGTTA+TGG 0.422251 6_1:-48137525 Msa0887100:CDS
TAAACTAACCACTGCAAAAG+TGG 0.428450 6_1:-48138647 Msa0887100:CDS
GAAAACTGAAAGCAAAATCA+TGG 0.462629 6_1:-48135742 Msa0887100:CDS
CATGTAGCAGTAGCAACTAT+TGG 0.465797 6_1:+48135626 None:intergenic
GCACTCAACACCTATGAGAA+AGG 0.482727 6_1:-48135780 Msa0887100:CDS
TCATCATTGAATAGCACAAA+AGG 0.490794 6_1:-48137599 Msa0887100:CDS
GATCAAAAGAGCAAAACAAT+TGG 0.495344 6_1:-48138512 Msa0887100:intron
GTAAGTGAGAGTGCAACATT+TGG 0.507865 6_1:+48138839 None:intergenic
TGAAGAGAAATTGGTGATTG+TGG 0.522068 6_1:+48138815 None:intergenic
CACTCAACACCTATGAGAAA+GGG 0.529960 6_1:-48135779 Msa0887100:CDS
ATTAAAGATACAACAAGTGA+AGG 0.532915 6_1:+48138870 None:intergenic
TTGTTAGGAGCAGTTATGGC+TGG 0.532963 6_1:-48137521 Msa0887100:CDS
TTGATCCTGCGCTGGATAGT+GGG 0.548692 6_1:+48138529 None:intergenic
GTGGTTAGTTTATTTAGCAA+CGG 0.549937 6_1:+48138658 None:intergenic
TACCTAGCTACATTTGTGTA+TGG 0.551091 6_1:-48135843 Msa0887100:CDS
GCCAGATAACAATCACCATA+AGG 0.551485 6_1:-48135983 Msa0887100:intron
AACAATGCTTTATCTGGTGA+AGG 0.551642 6_1:+48137539 None:intergenic
GGTGTGTGGTGATTGAAATA+GGG 0.567014 6_1:+48138785 None:intergenic
AATGCTTTATCTGGTGAAGG+TGG 0.571857 6_1:+48137542 None:intergenic
CATAGGTGTTGAGTGCAAGT+TGG 0.575800 6_1:+48135787 None:intergenic
TTAATGGCTGAAACAGTATG+AGG 0.581022 6_1:+48138703 None:intergenic
TTAAAGATACAACAAGTGAA+GGG 0.588344 6_1:+48138871 None:intergenic
TTCCATACACAAATGTAGCT+AGG 0.589997 6_1:+48135841 None:intergenic
AACAGTATGAGGATTAATTG+TGG 0.592702 6_1:+48138714 None:intergenic
TCTTTCCCACTATCCAGCGC+AGG 0.592749 6_1:-48138534 Msa0887100:CDS
TATGAGAAAGGGTCATCAAG+TGG 0.593728 6_1:-48135768 Msa0887100:CDS
GAACAATACAGCAATAGCTA+CGG 0.610277 6_1:+48138555 None:intergenic
AAATTATTATAATGGAGAAG+TGG 0.628122 6_1:+48138745 None:intergenic
TACGGAGAGGACAACACTGA+TGG 0.632376 6_1:+48138573 None:intergenic
GTGTGGTGATTGAAATAGGG+AGG 0.635700 6_1:+48138788 None:intergenic
TAGTTGCTACTGCTACATGT+TGG 0.654974 6_1:-48135622 Msa0887100:three_prime_UTR
ATACAGCAATAGCTACGGAG+AGG 0.739717 6_1:+48138560 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTTTTCTCTTTTTAT+TGG - chr6_1:48135985-48136004 Msa0887100:CDS 10.0%
!!! ATGTTTTGAATAAATTTTTA+AGG - chr6_1:48136147-48136166 Msa0887100:intron 10.0%
!!! TGTTTTGAATAAATTTTTAA+GGG - chr6_1:48136148-48136167 Msa0887100:intron 10.0%
!!! TTTTTTTTTTTTTTTGGTAA+AGG + chr6_1:48136475-48136494 None:intergenic 10.0%
!! ACCAAAAAAAAAAAAAAAAT+TGG - chr6_1:48136477-48136496 Msa0887100:intron 10.0%
!!! ACCAATTTTTTTTTTTTTTT+TGG + chr6_1:48136481-48136500 None:intergenic 10.0%
!!! TATTTTAAAAGTAATAACAA+CGG + chr6_1:48137676-48137695 None:intergenic 10.0%
!!! TTGTTATTACTTTTAAAATA+GGG - chr6_1:48137676-48137695 Msa0887100:intron 10.0%
!!! TTACAAAGTTATATTTTAAA+GGG + chr6_1:48138237-48138256 None:intergenic 10.0%
!!! TTTACAAAGTTATATTTTAA+AGG + chr6_1:48138238-48138257 None:intergenic 10.0%
!! ATTGTGTTAATATTAAATTA+TGG + chr6_1:48138888-48138907 None:intergenic 10.0%
!! ATTTGTGGAAATTATTATAA+TGG + chr6_1:48135661-48135680 None:intergenic 15.0%
!!! ATTAGATTTAATTGTAGTTT+TGG - chr6_1:48136035-48136054 Msa0887100:intron 15.0%
!!! GTTTTGAATAAATTTTTAAG+GGG - chr6_1:48136149-48136168 Msa0887100:intron 15.0%
!!! TTTTGAATAAATTTTTAAGG+GGG - chr6_1:48136150-48136169 Msa0887100:intron 15.0%
!! TAACTATTCATTCATAAAAA+AGG + chr6_1:48137009-48137028 None:intergenic 15.0%
!!! GTTGTTATTACTTTTAAAAT+AGG - chr6_1:48137675-48137694 Msa0887100:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr6_1:48138163-48138182 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr6_1:48137942-48137961 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr6_1:48138073-48138092 Msa0887100:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr6_1:48138163-48138182 Msa0887100:intron 15.0%
!! ATAATATTCTTTCATCTTAA+TGG - chr6_1:48138325-48138344 Msa0887100:intron 15.0%
!! CATAAAAAATGAAAACATTA+AGG + chr6_1:48138467-48138486 None:intergenic 15.0%
!!! AAATTATTATAATGGAGAAG+TGG + chr6_1:48135653-48135672 None:intergenic 20.0%
!! TATTGGAAAAATTTATTGAG+TGG - chr6_1:48136002-48136021 Msa0887100:intron 20.0%
!! TTCAAAATGATGAAAATATG+AGG - chr6_1:48136301-48136320 Msa0887100:intron 20.0%
!! GAATATTGCTAGTAATATTT+AGG + chr6_1:48136345-48136364 None:intergenic 20.0%
!!! TCTTATTTGGTAAATTTATG+TGG - chr6_1:48136394-48136413 Msa0887100:intron 20.0%
!!! AATTAATTTTGTACATTCTC+AGG - chr6_1:48136558-48136577 Msa0887100:intron 20.0%
!! TTATTCAAAGAATATGTATG+TGG + chr6_1:48136654-48136673 None:intergenic 20.0%
!! TTTCATCAAAGAATATTATG+TGG + chr6_1:48136732-48136751 None:intergenic 20.0%
!! CATAATATTCTTTGATGAAA+TGG - chr6_1:48136732-48136751 Msa0887100:intron 20.0%
!!! ATTGGTGATTTTAGAAATAT+AGG - chr6_1:48136755-48136774 Msa0887100:intron 20.0%
!!! AGAAATTATCTGAAATTGTT+TGG + chr6_1:48136957-48136976 None:intergenic 20.0%
!! AACAATTTCAGATAATTTCT+CGG - chr6_1:48136957-48136976 Msa0887100:intron 20.0%
!!! AATGTGTTTATTTTATCTCT+AGG - chr6_1:48137122-48137141 Msa0887100:intron 20.0%
!!! ATGTGTTTATTTTATCTCTA+GGG - chr6_1:48137123-48137142 Msa0887100:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr6_1:48137812-48137831 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr6_1:48137813-48137832 None:intergenic 20.0%
!!! ACTTATTTGAGATAAGTTTA+GGG + chr6_1:48138444-48138463 None:intergenic 20.0%
! TTAAAGATACAACAAGTGAA+GGG + chr6_1:48135527-48135546 None:intergenic 25.0%
! ATTAAAGATACAACAAGTGA+AGG + chr6_1:48135528-48135547 None:intergenic 25.0%
! TCATCTATAGCATCAAAAAT+GGG + chr6_1:48135782-48135801 None:intergenic 25.0%
! GTGTAGTTACTAAAAATTTC+TGG - chr6_1:48135940-48135959 Msa0887100:intron 25.0%
!! CACATATTTTCACCATTTTA+TGG - chr6_1:48136060-48136079 Msa0887100:intron 25.0%
! TGATAGGTAAATATCAACAT+TGG + chr6_1:48136192-48136211 None:intergenic 25.0%
! GCAATATATGATATGATGAT+AGG + chr6_1:48136208-48136227 None:intergenic 25.0%
! CATGAAAGTTTAAAAATGTG+GGG + chr6_1:48136422-48136441 None:intergenic 25.0%
! GCATGAAAGTTTAAAAATGT+GGG + chr6_1:48136423-48136442 None:intergenic 25.0%
! ATACATCAATACATGATCAA+GGG + chr6_1:48136445-48136464 None:intergenic 25.0%
! AATACATCAATACATGATCA+AGG + chr6_1:48136446-48136465 None:intergenic 25.0%
! TATTCTTTGATGAAATGGAT+TGG - chr6_1:48136737-48136756 Msa0887100:intron 25.0%
!!! TTTTAGAAATATAGGTCTTC+TGG - chr6_1:48136763-48136782 Msa0887100:intron 25.0%
!!! ACATTAAAAGTGTCAACAAA+GGG + chr6_1:48137089-48137108 None:intergenic 25.0%
!!! CACTTTTAATGTCATTTCAT+TGG - chr6_1:48137097-48137116 Msa0887100:intron 25.0%
! TAGTATGAGAATGTATTGAA+TGG - chr6_1:48137317-48137336 Msa0887100:intron 25.0%
! CTATCCTTAGTTGTATAAAT+AGG + chr6_1:48137379-48137398 None:intergenic 25.0%
! CATTGTAGTGCATTTATATT+CGG - chr6_1:48137463-48137482 Msa0887100:CDS 25.0%
!! GAAAATTATGTGTTCTAGAT+TGG + chr6_1:48137569-48137588 None:intergenic 25.0%
!!! TATAAGGTCGCTATTTTATA+GGG + chr6_1:48137719-48137738 None:intergenic 25.0%
!!! TTATAAGGTCGCTATTTTAT+AGG + chr6_1:48137720-48137739 None:intergenic 25.0%
! AAGTAAGGACTAAACTTATA+AGG + chr6_1:48137735-48137754 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr6_1:48137779-48137798 None:intergenic 25.0%
!! GACTTATTTGAGATAAGTTT+AGG + chr6_1:48138445-48138464 None:intergenic 25.0%
!!! CTACATGTTGGTTTTTTAAT+AGG - chr6_1:48138785-48138804 Msa0887100:CDS 25.0%
! AAACATTATGCTCATGTATA+AGG + chr6_1:48138823-48138842 None:intergenic 25.0%
TAATGAAGAAAAATGGTGTG+TGG + chr6_1:48135627-48135646 None:intergenic 30.0%
GTGGAGATAATGAAGAAAAA+TGG + chr6_1:48135634-48135653 None:intergenic 30.0%
AACAGTATGAGGATTAATTG+TGG + chr6_1:48135684-48135703 None:intergenic 30.0%
TACTTCTTGAGAAGGATTAA+TGG + chr6_1:48135711-48135730 None:intergenic 30.0%
GGTAAAAATACTTCTTGAGA+AGG + chr6_1:48135719-48135738 None:intergenic 30.0%
!! GTGGTTAGTTTATTTAGCAA+CGG + chr6_1:48135740-48135759 None:intergenic 30.0%
CATCTATAGCATCAAAAATG+GGG + chr6_1:48135781-48135800 None:intergenic 30.0%
GTCATCTATAGCATCAAAAA+TGG + chr6_1:48135783-48135802 None:intergenic 30.0%
GATCAAAAGAGCAAAACAAT+TGG - chr6_1:48135883-48135902 Msa0887100:intron 30.0%
AACTACACATAAATTGCTTG+AGG + chr6_1:48135928-48135947 None:intergenic 30.0%
GGATGATCAATTCCATAAAA+TGG + chr6_1:48136075-48136094 None:intergenic 30.0%
! TTTTAATCCAGCCATCAAAT+AGG - chr6_1:48136115-48136134 Msa0887100:intron 30.0%
ATGCATATCATCCTATTTGA+TGG + chr6_1:48136129-48136148 None:intergenic 30.0%
GGCATGAAAGTTTAAAAATG+TGG + chr6_1:48136424-48136443 None:intergenic 30.0%
! GGTAGATATTTTACTGAAAG+TGG - chr6_1:48136498-48136517 Msa0887100:intron 30.0%
CCTTTGTATATCATCTAAAG+AGG + chr6_1:48136682-48136701 None:intergenic 30.0%
CCTCTTTAGATGATATACAA+AGG - chr6_1:48136679-48136698 Msa0887100:intron 30.0%
TCATCATTGAATAGCACAAA+AGG - chr6_1:48136796-48136815 Msa0887100:intron 30.0%
AATAGCACAAAAGGACTTAT+GGG - chr6_1:48136805-48136824 Msa0887100:intron 30.0%
CCTCATATGAACATAAACAA+TGG + chr6_1:48137051-48137070 None:intergenic 30.0%
CCATTGTTTATGTTCATATG+AGG - chr6_1:48137048-48137067 Msa0887100:intron 30.0%
!! GACATTAAAAGTGTCAACAA+AGG + chr6_1:48137090-48137109 None:intergenic 30.0%
! TATCTCTAGGGAGAAAAATT+AGG - chr6_1:48137135-48137154 Msa0887100:intron 30.0%
TTTCTTTGATATGTCTCCAT+AGG - chr6_1:48137163-48137182 Msa0887100:intron 30.0%
! ATGGATTAAAGGGAATCATA+GGG + chr6_1:48137202-48137221 None:intergenic 30.0%
! TATGGATTAAAGGGAATCAT+AGG + chr6_1:48137203-48137222 None:intergenic 30.0%
! CCATGTCATTATGGATTAAA+GGG + chr6_1:48137212-48137231 None:intergenic 30.0%
CCTTTAATCCATAATGACAT+GGG - chr6_1:48137210-48137229 Msa0887100:intron 30.0%
CTTTAATCCATAATGACATG+GGG - chr6_1:48137211-48137230 Msa0887100:intron 30.0%
TAGTTGTATAAATAGGTCCT+AGG + chr6_1:48137372-48137391 None:intergenic 30.0%
AGGACCTATTTATACAACTA+AGG - chr6_1:48137372-48137391 Msa0887100:intron 30.0%
TGTGATAAATCTTCTGTGTT+CGG - chr6_1:48137512-48137531 Msa0887100:CDS 30.0%
! TGCATTTTCTTAAGTGCTTT+TGG + chr6_1:48137641-48137660 None:intergenic 30.0%
CACTTAAGAAAATGCACATA+AGG - chr6_1:48137645-48137664 Msa0887100:intron 30.0%
CAGTGCAGAAAAACAAAATT+AGG + chr6_1:48137780-48137799 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + chr6_1:48138039-48138058 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr6_1:48138178-48138197 Msa0887100:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr6_1:48138193-48138212 Msa0887100:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr6_1:48138194-48138213 Msa0887100:intron 30.0%
! ATTTGAGATAAGTTTAGGGA+AGG + chr6_1:48138440-48138459 None:intergenic 30.0%
!! ATTTATTACCGTTCTGAAGT+GGG + chr6_1:48138523-48138542 None:intergenic 30.0%
! GTGTATGGAATAAACTCTTT+TGG - chr6_1:48138567-48138586 Msa0887100:CDS 30.0%
!! TTTGGTTTGTTGCTTTATTC+TGG - chr6_1:48138585-48138604 Msa0887100:CDS 30.0%
GAAAACTGAAAGCAAAATCA+TGG - chr6_1:48138653-48138672 Msa0887100:CDS 30.0%
! TGAAGAGAAATTGGTGATTG+TGG + chr6_1:48135583-48135602 None:intergenic 35.0%
GAGGATTAATTGTGGATTTG+TGG + chr6_1:48135676-48135695 None:intergenic 35.0%
TTAATGGCTGAAACAGTATG+AGG + chr6_1:48135695-48135714 None:intergenic 35.0%
TAAACTAACCACTGCAAAAG+TGG - chr6_1:48135748-48135767 Msa0887100:CDS 35.0%
GAACAATACAGCAATAGCTA+CGG + chr6_1:48135843-48135862 None:intergenic 35.0%
! ATATCATCCTATTTGATGGC+TGG + chr6_1:48136125-48136144 None:intergenic 35.0%
TCAACATTGGTGAAATCGTA+AGG + chr6_1:48136179-48136198 None:intergenic 35.0%
TCAACACATGCTCTCTTATT+TGG - chr6_1:48136381-48136400 Msa0887100:intron 35.0%
TGGACTCAATTGAAAATGCA+AGG + chr6_1:48136712-48136731 None:intergenic 35.0%
GAATAGCACAAAAGGACTTA+TGG - chr6_1:48136804-48136823 Msa0887100:intron 35.0%
AACAATGCTTTATCTGGTGA+AGG + chr6_1:48136859-48136878 None:intergenic 35.0%
!! TCACCAGATAAAGCATTGTT+AGG - chr6_1:48136859-48136878 Msa0887100:intron 35.0%
AACAAAGGGTTATGGACTTA+TGG + chr6_1:48137075-48137094 None:intergenic 35.0%
! AAAGTGTCAACAAAGGGTTA+TGG + chr6_1:48137083-48137102 None:intergenic 35.0%
GGGAGTTAAGTTAAAACCTA+TGG + chr6_1:48137182-48137201 None:intergenic 35.0%
CCCTTTAATCCATAATGACA+TGG - chr6_1:48137209-48137228 Msa0887100:intron 35.0%
! CCCATGTCATTATGGATTAA+AGG + chr6_1:48137213-48137232 None:intergenic 35.0%
! TCTTGATGGAATGTTGATTG+AGG + chr6_1:48137257-48137276 None:intergenic 35.0%
ACAACTAAGGATAGAGTTGT+TGG - chr6_1:48137385-48137404 Msa0887100:intron 35.0%
GTGATAAATCTTCTGTGTTC+GGG - chr6_1:48137513-48137532 Msa0887100:CDS 35.0%
! CTTAGCATATAGGGAGTTTT+GGG - chr6_1:48137536-48137555 Msa0887100:CDS 35.0%
TGAATGTCTTATGCTTTCTC+AGG - chr6_1:48138386-48138405 Msa0887100:intron 35.0%
ACCTTATGGTGATTGTTATC+TGG + chr6_1:48138416-48138435 None:intergenic 35.0%
ACATTTATCCCACTTCAGAA+CGG - chr6_1:48138512-48138531 Msa0887100:intron 35.0%
!! CATTTATTACCGTTCTGAAG+TGG + chr6_1:48138524-48138543 None:intergenic 35.0%
CACTTCAGAACGGTAATAAA+TGG - chr6_1:48138522-48138541 Msa0887100:CDS 35.0%
TACCTAGCTACATTTGTGTA+TGG - chr6_1:48138552-48138571 Msa0887100:CDS 35.0%
TTCCATACACAAATGTAGCT+AGG + chr6_1:48138557-48138576 None:intergenic 35.0%
! GTAAGTGAGAGTGCAACATT+TGG + chr6_1:48135559-48135578 None:intergenic 40.0%
GGAGGTTTGTGAAGAGAAAT+TGG + chr6_1:48135592-48135611 None:intergenic 40.0%
GGTGTGTGGTGATTGAAATA+GGG + chr6_1:48135613-48135632 None:intergenic 40.0%
TGGTGTGTGGTGATTGAAAT+AGG + chr6_1:48135614-48135633 None:intergenic 40.0%
!! GCTTAATTCCACTTTTGCAG+TGG + chr6_1:48135759-48135778 None:intergenic 40.0%
AATGCTTTATCTGGTGAAGG+TGG + chr6_1:48136856-48136875 None:intergenic 40.0%
GCTCCTAACAATGCTTTATC+TGG + chr6_1:48136865-48136884 None:intergenic 40.0%
AGCATTGTTAGGAGCAGTTA+TGG - chr6_1:48136870-48136889 Msa0887100:intron 40.0%
ATGATCACCCCATGTCATTA+TGG + chr6_1:48137221-48137240 None:intergenic 40.0%
ATTCCATCAAGATGCGAGTT+GGG - chr6_1:48137265-48137284 Msa0887100:intron 40.0%
AGTTGTGTACCTTTGTGTTG+TGG - chr6_1:48137345-48137364 Msa0887100:intron 40.0%
GATTTCGACATTGATACCCA+CGG + chr6_1:48137437-48137456 None:intergenic 40.0%
GTGGGTATCAATGTCGAAAT+CGG - chr6_1:48137436-48137455 Msa0887100:intron 40.0%
AAGCAAAAGCTTGACACGAT+TGG - chr6_1:48137486-48137505 Msa0887100:CDS 40.0%
! GCTTAGCATATAGGGAGTTT+TGG - chr6_1:48137535-48137554 Msa0887100:CDS 40.0%
!!! TATAGGGAGTTTTGGGTCTT+AGG - chr6_1:48137543-48137562 Msa0887100:CDS 40.0%
GCCAGATAACAATCACCATA+AGG - chr6_1:48138412-48138431 Msa0887100:intron 40.0%
!! AGTTTAGGGAAGGTACCTTA+TGG + chr6_1:48138430-48138449 None:intergenic 40.0%
CACTCAACACCTATGAGAAA+GGG - chr6_1:48138616-48138635 Msa0887100:CDS 40.0%
! ACTTGATGACCCTTTCTCAT+AGG + chr6_1:48138628-48138647 None:intergenic 40.0%
TATGAGAAAGGGTCATCAAG+TGG - chr6_1:48138627-48138646 Msa0887100:CDS 40.0%
CATGTAGCAGTAGCAACTAT+TGG + chr6_1:48138772-48138791 None:intergenic 40.0%
TAGTTGCTACTGCTACATGT+TGG - chr6_1:48138773-48138792 Msa0887100:CDS 40.0%
GTGTGGTGATTGAAATAGGG+AGG + chr6_1:48135610-48135629 None:intergenic 45.0%
GGACAACACTGATGGTTACT+TGG + chr6_1:48135817-48135836 None:intergenic 45.0%
ATACAGCAATAGCTACGGAG+AGG + chr6_1:48135838-48135857 None:intergenic 45.0%
TTGTTAGGAGCAGTTATGGC+TGG - chr6_1:48136874-48136893 Msa0887100:intron 45.0%
ACATGGGGTGATCATTGATG+TGG - chr6_1:48137226-48137245 Msa0887100:intron 45.0%
CATGGGGTGATCATTGATGT+GGG - chr6_1:48137227-48137246 Msa0887100:intron 45.0%
! GATGGAATGTTGATTGAGGC+AGG + chr6_1:48137253-48137272 None:intergenic 45.0%
CATTCCATCAAGATGCGAGT+TGG - chr6_1:48137264-48137283 Msa0887100:intron 45.0%
ATTCCCAACTCGCATCTTGA+TGG + chr6_1:48137271-48137290 None:intergenic 45.0%
! TTAAGCGTCAAAGTGTTCGC+TGG + chr6_1:48137295-48137314 None:intergenic 45.0%
TACCTTTGTGTTGTGGTCCT+AGG - chr6_1:48137352-48137371 Msa0887100:intron 45.0%
TGATACCCACGGTTTGTAAC+CGG + chr6_1:48137426-48137445 None:intergenic 45.0%
TGTGTTCGGGCTTAGCATAT+AGG - chr6_1:48137526-48137545 Msa0887100:CDS 45.0%
GTGTTCGGGCTTAGCATATA+GGG - chr6_1:48137527-48137546 Msa0887100:CDS 45.0%
!! CATAGGTGTTGAGTGCAAGT+TGG + chr6_1:48138611-48138630 None:intergenic 45.0%
GCACTCAACACCTATGAGAA+AGG - chr6_1:48138615-48138634 Msa0887100:CDS 45.0%
!!! ATTTACAAATTTTAAAATAT+AGG + chr6_1:48136096-48136115 None:intergenic 5.0%
!! AAAATAAGATAATTTATAAT+AGG - chr6_1:48136267-48136286 Msa0887100:intron 5.0%
!!! TATAAGTAAATTTTTTTTAT+AGG - chr6_1:48138133-48138152 Msa0887100:intron 5.0%
!!! ATAAGTAAATTTTTTTTATA+GGG - chr6_1:48138134-48138153 Msa0887100:intron 5.0%
TACGGAGAGGACAACACTGA+TGG + chr6_1:48135825-48135844 None:intergenic 50.0%
TTGATCCTGCGCTGGATAGT+GGG + chr6_1:48135869-48135888 None:intergenic 50.0%
TTTGATCCTGCGCTGGATAG+TGG + chr6_1:48135870-48135889 None:intergenic 50.0%
! TTGCTCTTTTGATCCTGCGC+TGG + chr6_1:48135877-48135896 None:intergenic 50.0%
GTCCTAGGACCACAACACAA+AGG + chr6_1:48137357-48137376 None:intergenic 50.0%
AGTTGTTGGAGTAGTCGCTG+AGG - chr6_1:48137399-48137418 Msa0887100:intron 50.0%
GTTGTTGGAGTAGTCGCTGA+GGG - chr6_1:48137400-48137419 Msa0887100:intron 50.0%
TCTTTCCCACTATCCAGCGC+AGG - chr6_1:48135861-48135880 Msa0887100:CDS 55.0%
TTGGAGTAGTCGCTGAGGGC+CGG - chr6_1:48137404-48137423 Msa0887100:intron 60.0%
TGAGGGCCGGTTACAAACCG+TGG - chr6_1:48137417-48137436 Msa0887100:intron 60.0%
GAGGGCCGGTTACAAACCGT+GGG - chr6_1:48137418-48137437 Msa0887100:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 48135509 48138908 48135509 ID=Msa0887100;Name=Msa0887100
chr6_1 mRNA 48135509 48138908 48135509 ID=Msa0887100-mRNA-1;Parent=Msa0887100;Name=Msa0887100-mRNA-1;_AED=0.04;_eAED=0.04;_QI=51|1|1|1|1|1|4|147|270
chr6_1 exon 48135509 48135887 48135509 ID=Msa0887100-mRNA-1:exon:10025;Parent=Msa0887100-mRNA-1
chr6_1 exon 48135984 48136009 48135984 ID=Msa0887100-mRNA-1:exon:10024;Parent=Msa0887100-mRNA-1
chr6_1 exon 48137439 48137648 48137439 ID=Msa0887100-mRNA-1:exon:10023;Parent=Msa0887100-mRNA-1
chr6_1 exon 48138513 48138908 48138513 ID=Msa0887100-mRNA-1:exon:10022;Parent=Msa0887100-mRNA-1
chr6_1 five_prime_UTR 48138858 48138908 48138858 ID=Msa0887100-mRNA-1:five_prime_utr;Parent=Msa0887100-mRNA-1
chr6_1 CDS 48138513 48138857 48138513 ID=Msa0887100-mRNA-1:cds;Parent=Msa0887100-mRNA-1
chr6_1 CDS 48137439 48137648 48137439 ID=Msa0887100-mRNA-1:cds;Parent=Msa0887100-mRNA-1
chr6_1 CDS 48135984 48136009 48135984 ID=Msa0887100-mRNA-1:cds;Parent=Msa0887100-mRNA-1
chr6_1 CDS 48135656 48135887 48135656 ID=Msa0887100-mRNA-1:cds;Parent=Msa0887100-mRNA-1
chr6_1 three_prime_UTR 48135509 48135655 48135509 ID=Msa0887100-mRNA-1:three_prime_utr;Parent=Msa0887100-mRNA-1
Gene Sequence

>Msa0887100

ATGTTGCACTCTCACTTACACCACAATCACCAATTTCTCTTCACAAACCTCCCTATTTCAATCACCACACACCATTTTTCTTCATTATCTCCACTTCTCCATTATAATAATTTCCACAAATCCACAATTAATCCTCATACTGTTTCAGCCATTAATCCTTCTCAAGAAGTATTTTTACCGTTGCTAAATAAACTAACCACTGCAAAAGTGGAATTAAGCCCCATTTTTGATGCTATAGATGACTCTTCTTCAAACCAAGTAACCATCAGTGTTGTCCTCTCCGTAGCTATTGCTGTATTGTTCTTTCCCACTATCCAGCGCAGGATCAAAAGAGCAAAACAATTGAAATATAGGTCTTCTGGAGTGAAGAAGTCATCATTGAATAGCACAAAAGGACTTATGGGATCAACTAAAAAGAAATCTAAGAATCCACCTTCACCAGATAAAGCATTGTTAGGAGCAGTTATGGCTGGTGTTATTGCTGTTATTCTCTATAAGTTCACAACAACTATAGAAGCATCTCTATATCGCCAAACAATTTCAGATAATTTCTCGGTTCGCCAGATAACAATCACCATAAGAACGGTAATAAATGGCTTATGCTACCTAGCTACATTTGTGTATGGAATAAACTCTTTTGGTTTGTTGCTTTATTCTGGCCAACTTGCACTCAACACCTATGAGAAAGGGTCATCAAGTGGAAAGAAAACTGAAAGCAAAATCATGGAGAATTCATACTTGTCAAATTCATCTAATGAGAATCACACAAATAGCAACAAAAATGAAGATCAAAGTTCAAATAATTCACAATAA

Protein sequence

>Msa0887100

MLHSHLHHNHQFLFTNLPISITTHHFSSLSPLLHYNNFHKSTINPHTVSAINPSQEVFLPLLNKLTTAKVELSPIFDAIDDSSSNQVTISVVLSVAIAVLFFPTIQRRIKRAKQLKYRSSGVKKSSLNSTKGLMGSTKKKSKNPPSPDKALLGAVMAGVIAVILYKFTTTIEASLYRQTISDNFSVRQITITIRTVINGLCYLATFVYGINSFGLLLYSGQLALNTYEKGSSSGKKTESKIMENSYLSNSSNENHTNSNKNEDQSSNNSQ*