AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1317240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317240 MtrunA17_Chr8g0347471 94.737 988 25 4 1 962 1 987 0.0 1928
Msa1317240 MtrunA17_Chr5g0396821 50.489 818 309 16 188 962 270 1034 0.0 733
Msa1317240 MtrunA17_Chr2g0317491 39.832 831 403 17 197 962 77 875 6.08e-177 536
Msa1317240 MtrunA17_Chr5g0438901 44.602 352 182 3 611 961 336 675 3.86e-101 331
Msa1317240 MtrunA17_Chr2g0283891 25.468 267 173 10 647 903 60 310 7.61e-15 76.6
Msa1317240 MtrunA17_Chr7g0253861 23.106 264 185 8 644 902 51 301 5.65e-13 71.6
Msa1317240 MtrunA17_Chr4g0035611 24.901 253 153 10 718 949 29 265 3.43e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317240 AT2G46340.1 51.613 806 337 10 178 962 256 1029 0.0 764
Msa1317240 AT2G46340.2 51.613 806 337 10 178 962 256 1029 0.0 764
Msa1317240 AT4G11110.1 45.749 835 412 15 133 962 238 1036 0.0 685
Msa1317240 AT3G15354.3 38.321 822 398 17 197 962 76 844 0.0 548
Msa1317240 AT3G15354.1 37.713 822 395 18 197 962 76 836 2.90e-174 528
Msa1317240 AT1G53090.3 42.342 666 323 12 339 962 148 794 1.11e-166 507
Msa1317240 AT1G53090.1 42.342 666 323 12 339 962 148 794 1.11e-166 507
Msa1317240 AT1G53090.2 42.342 666 323 12 339 962 148 794 1.11e-166 507
Msa1317240 AT3G15354.4 42.952 603 283 12 412 962 1 594 1.01e-156 474
Msa1317240 AT3G15354.5 42.952 603 283 12 412 962 1 594 1.01e-156 474
Msa1317240 AT1G53090.4 43.750 592 273 11 412 962 1 573 3.43e-155 470
Msa1317240 AT2G32950.2 39.180 439 236 5 523 961 153 560 1.24e-102 332
Msa1317240 AT3G15354.2 32.753 632 320 15 197 772 76 658 2.21e-102 334
Msa1317240 AT2G32950.1 38.976 449 242 6 514 962 258 674 2.90e-101 332
Msa1317240 AT1G53090.5 36.287 474 253 9 339 774 148 610 1.37e-87 293
Msa1317240 AT5G23730.1 35.417 336 176 14 649 958 41 361 9.18e-46 169
Msa1317240 AT5G52250.1 32.515 326 194 9 646 959 69 380 9.60e-44 164
Msa1317240 AT1G29260.1 26.592 267 169 11 655 912 69 317 8.58e-14 73.9
Msa1317240 AT1G62020.1 25.984 254 149 10 718 949 29 265 1.86e-13 75.5
Msa1317240 AT2G43770.1 25.658 304 196 13 644 931 48 337 1.26e-12 70.9
Msa1317240 AT2G47990.1 25.455 220 155 4 700 912 96 313 2.56e-11 67.8

Find 174 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTGTGACTTAACCTTTA+AGG 0.103884 8_4:+18401091 Msa1317240:CDS
TCCATTACTATGACCCTTAA+AGG 0.147618 8_4:-18401105 None:intergenic
GCTTCTTTGCACTCAAATTT+TGG 0.148667 8_4:-18398611 None:intergenic
GTATATATTTAAACAGATTT+TGG 0.151402 8_4:+18398365 Msa1317240:CDS
TTCTGAATTCAAGTATTTAT+TGG 0.172653 8_4:+18397288 Msa1317240:five_prime_UTR
GAGTCAATCGATCCCATTTC+TGG 0.201090 8_4:+18401694 Msa1317240:CDS
TTTCGTTGGTTTATCTGTTT+TGG 0.225023 8_4:+18401215 Msa1317240:CDS
GTTTCCTCATTGAGCACTTC+TGG 0.244572 8_4:-18398837 None:intergenic
CTAAGACCAGTGATTTATTC+AGG 0.254595 8_4:+18401856 Msa1317240:three_prime_UTR
TTTGCTTCCTTTGCTGGATC+TGG 0.260174 8_4:+18397859 Msa1317240:CDS
AATGACGAATAAAGCTTAAA+TGG 0.277827 8_4:+18401890 Msa1317240:three_prime_UTR
TACATTTGCCGGACTCATTA+TGG 0.278414 8_4:-18400829 None:intergenic
CTAGATTGTGCACACCTATT+AGG 0.304815 8_4:+18397788 Msa1317240:CDS
TGAATTTATACGCGAATTAG+AGG 0.317112 8_4:+18399537 Msa1317240:CDS
ATAGAACCTTGAATTCTCTT+TGG 0.319753 8_4:-18399991 None:intergenic
GCTTGTGACTTAACCTTTAA+GGG 0.321542 8_4:+18401092 Msa1317240:CDS
CAGCTTCCTTGAGCGGGCCT+TGG 0.322871 8_4:-18399891 None:intergenic
AAGAACTTGAATGTAGCTTT+AGG 0.326233 8_4:+18397955 Msa1317240:CDS
GAACAGACCAAGCTCTCTTT+TGG 0.329939 8_4:-18400515 None:intergenic
AAGAGAATTCAAGGTTCTAT+TGG 0.336597 8_4:+18399994 Msa1317240:CDS
CATAATGCTTTACCTGGTAT+TGG 0.338301 8_4:-18399366 None:intergenic
TCTAGTTATCCTCAGTTGTT+AGG 0.340550 8_4:+18398213 Msa1317240:CDS
CATCACTTCAACTGTATTCA+TGG 0.343911 8_4:+18398672 Msa1317240:CDS
GAATTAGAGGCATCAAATTC+TGG 0.345543 8_4:+18399550 Msa1317240:CDS
ACTGTTTGAATGACCAGAAA+TGG 0.347885 8_4:-18401707 None:intergenic
GTATCCCTCCACATAACTTT+AGG 0.348953 8_4:+18397977 Msa1317240:CDS
AACCAGAGAGTTATTGCTAT+TGG 0.351564 8_4:-18397359 None:intergenic
TTTAAATATATACAGCCTTA+AGG 0.364151 8_4:-18398355 None:intergenic
CGTATTTAAGTCATGCCTTA+AGG 0.365621 8_4:+18398530 Msa1317240:CDS
AGTTTGTTTCTAGTGTCTGC+TGG 0.369423 8_4:+18401746 Msa1317240:CDS
TCAACAAATGTTTATAGCCT+TGG 0.369678 8_4:+18398870 Msa1317240:CDS
TGAACACAACATACATTTGC+CGG 0.379155 8_4:-18400840 None:intergenic
TGATTATGATGGTGTGGTTC+AGG 0.382294 8_4:+18400320 Msa1317240:CDS
TTGTTGAAAAGTTACATGTT+AGG 0.390189 8_4:+18397926 Msa1317240:CDS
ATAATGCTTTACCTGGTATT+GGG 0.391610 8_4:-18399365 None:intergenic
CTAATAGGTGTGCACAATCT+AGG 0.399179 8_4:-18397787 None:intergenic
CAAGGTTCTATTGGTTGTCT+AGG 0.404862 8_4:+18400003 Msa1317240:CDS
CAGATTAAGCAAAGGACAAA+AGG 0.405341 8_4:+18398077 Msa1317240:CDS
AAGGAAAATGCCTTGGGAAC+AGG 0.405545 8_4:+18398575 Msa1317240:CDS
ATGATTGTTCTGTCAAACTA+TGG 0.406776 8_4:+18400580 Msa1317240:CDS
ATTTAGAGAATGTTGGTAAT+GGG 0.407051 8_4:+18399968 Msa1317240:CDS
CATCTGTGATTAAATTCAAA+AGG 0.429024 8_4:-18402099 None:intergenic
GACATAGTTTCAAGTTCAAT+CGG 0.434114 8_4:-18402254 None:intergenic
TTGGGACGAGAAGACGGTTC+AGG 0.435479 8_4:-18399347 None:intergenic
TGCTTCATACATCTCTTGTT+CGG 0.436455 8_4:-18402061 None:intergenic
ATTGAAGGAACTGCATGAAT+TGG 0.438287 8_4:+18397682 Msa1317240:intron
ACCTTTAAGGGTCATAGTAA+TGG 0.442210 8_4:+18401104 Msa1317240:CDS
TGCAGGTCATGATGGCCTTA+AGG 0.446031 8_4:-18398545 None:intergenic
TGTTCCATTGCAGGTCATGA+TGG 0.451431 8_4:-18398553 None:intergenic
CTGATAACTCTTTGAAGCTA+TGG 0.453806 8_4:+18401030 Msa1317240:CDS
TTCGTAACACTAAAATTCCT+TGG 0.455018 8_4:+18400931 Msa1317240:CDS
TTGCATATACCTTCATAGAA+AGG 0.456350 8_4:-18400027 None:intergenic
TGAAGAGACAGCATCTCTTA+AGG 0.463340 8_4:+18398644 Msa1317240:CDS
GAGGAACTGAAGAGCATAAG+AGG 0.464134 8_4:+18397737 Msa1317240:CDS
TTTGCTTCAACAAATGAACT+TGG 0.464342 8_4:-18399817 None:intergenic
TTCATCGCGGTCAAAACTTA+AGG 0.464544 8_4:-18400130 None:intergenic
AAAGAAAGGCTGTGCGTTGA+TGG 0.465033 8_4:+18398732 Msa1317240:CDS
CTCCAATAGCAATAACTCTC+TGG 0.468856 8_4:+18397357 Msa1317240:five_prime_UTR
TTGAATAAAATTAAATACAT+TGG 0.469482 8_4:+18398462 Msa1317240:CDS
TTGTTTGACATCTCGACGAC+GGG 0.470055 8_4:-18400240 None:intergenic
ATTCTTCATAATGTGATGTC+TGG 0.471326 8_4:+18398261 Msa1317240:CDS
CATTTAGAGAATGTTGGTAA+TGG 0.473306 8_4:+18399967 Msa1317240:CDS
ATATATGTGATGTATCGAAT+AGG 0.473832 8_4:+18402223 Msa1317240:three_prime_UTR
TGTCTAGGACCTTTCTATGA+AGG 0.475887 8_4:+18400018 Msa1317240:CDS
ATTAGGAAGGAAAATGTGAT+TGG 0.478880 8_4:+18397805 Msa1317240:CDS
GCTGTGCAATATTGAGTCAT+TGG 0.479826 8_4:+18399220 Msa1317240:CDS
TTTCTTCTCCAGAATTTCGT+TGG 0.480988 8_4:+18401201 Msa1317240:intron
CGGCTGCAGCTTCCTTGAGC+GGG 0.481237 8_4:-18399897 None:intergenic
CTAGATGTAGCTGAAGAACT+TGG 0.481260 8_4:-18398195 None:intergenic
TTACTGGAAGAATCATGATA+AGG 0.482054 8_4:-18399775 None:intergenic
ATTCCTTGGTGTACGTTACC+TGG 0.484841 8_4:+18400945 Msa1317240:CDS
GAGAAAACAGTGAAGGGAAA+GGG 0.487106 8_4:+18398237 Msa1317240:CDS
GCGGCTGCAGCTTCCTTGAG+CGG 0.488025 8_4:-18399898 None:intergenic
TAAGACATGACAGCAAATAG+TGG 0.492429 8_4:+18397712 Msa1317240:exon
CTGTTTGAATGACCAGAAAT+GGG 0.492430 8_4:-18401706 None:intergenic
TAAATGAGGCAATCTCCATC+TGG 0.493793 8_4:-18399950 None:intergenic
ATGGAACAAGGAAAATGCCT+TGG 0.493894 8_4:+18398568 Msa1317240:CDS
CGTCTTCTCGTCCCAATACC+AGG 0.496888 8_4:+18399354 Msa1317240:CDS
CAGCATCAGAGGAATCAGTT+AGG 0.500345 8_4:+18398000 Msa1317240:CDS
AGAGAAAACAGTGAAGGGAA+AGG 0.500835 8_4:+18398236 Msa1317240:CDS
TATAGGAACCATAATGAGTC+CGG 0.501767 8_4:+18400821 Msa1317240:CDS
ATAAAGTGAAGAAAACCTTA+AGG 0.502155 8_4:+18398340 Msa1317240:CDS
CTTGTTGCAGCCAACTCAGT+TGG 0.503279 8_4:+18401787 Msa1317240:CDS
AATGGGCCAAAGAGAATTCA+AGG 0.506547 8_4:+18399985 Msa1317240:CDS
AATCAAGGGTTGATAAAGAA+AGG 0.507494 8_4:+18398718 Msa1317240:CDS
TTGTGAGAAGCCATTGGCAC+TGG 0.508051 8_4:-18401667 None:intergenic
CAAAGCTCAGTTGTGTGTGC+TGG 0.508113 8_4:+18400265 Msa1317240:CDS
TGGATTCAGATGTGGGATGC+AGG 0.508695 8_4:+18400459 Msa1317240:intron
TTGTTTGAACGAAGATATCA+AGG 0.514100 8_4:+18399693 Msa1317240:CDS
CAGATGTGGGATGCAGGCAC+TGG 0.514655 8_4:+18400465 Msa1317240:intron
TCACAAAATGCAAAGGAAGC+TGG 0.517461 8_4:+18399302 Msa1317240:CDS
ATCTAGGTGACCTTGGCAAA+GGG 0.519350 8_4:-18397771 None:intergenic
GTAGAAAGAAATCATTCGTA+TGG 0.520653 8_4:+18399718 Msa1317240:CDS
TAAGGTAGATAGTTCAATTG+TGG 0.521276 8_4:-18399757 None:intergenic
TTGCCTCATTTAGAGAATGT+TGG 0.524574 8_4:+18399961 Msa1317240:CDS
CGGAGCACCAAAAGAGAGCT+TGG 0.525737 8_4:+18400508 Msa1317240:CDS
TTTGGTCATCAAACACATGT+TGG 0.526232 8_4:-18398494 None:intergenic
TTACCAACATTCTCTAAATG+AGG 0.528415 8_4:-18399964 None:intergenic
TCGAATTTGTGAGAAGCCAT+TGG 0.529274 8_4:-18401673 None:intergenic
AAGCTTAAATGGAGAGGAGA+GGG 0.533838 8_4:+18401901 Msa1317240:three_prime_UTR
TGGAACAAGGAAAATGCCTT+GGG 0.536920 8_4:+18398569 Msa1317240:CDS
TTTCACAATTCCAACTGAGT+TGG 0.539152 8_4:-18401797 None:intergenic
AATCTAGGTGACCTTGGCAA+AGG 0.539545 8_4:-18397772 None:intergenic
AACAATGTGTTTAGGATCTG+TGG 0.540165 8_4:-18397908 None:intergenic
CAATTCAGTTTGAAGAGAAG+TGG 0.541430 8_4:+18398805 Msa1317240:CDS
TTGAAGCCTGAATAAATCAC+TGG 0.541978 8_4:-18401862 None:intergenic
CTTAAGGCATGACTTAAATA+CGG 0.542841 8_4:-18398529 None:intergenic
TACTTCTCCATGAGATTCCA+AGG 0.543464 8_4:+18399874 Msa1317240:CDS
TGGTGTACGTTACCTGGTCA+TGG 0.543773 8_4:+18400951 Msa1317240:CDS
GAGTTTAAATTGTTTCAAAG+AGG 0.544146 8_4:+18401928 Msa1317240:three_prime_UTR
AGATTAAGCAAAGGACAAAA+GGG 0.544395 8_4:+18398078 Msa1317240:CDS
CATAATCAGTTGATGCCAGA+TGG 0.545546 8_4:-18400305 None:intergenic
TAGTTTCAAGTTCAATCGGC+CGG 0.547842 8_4:-18402250 None:intergenic
AAGGCCATCATGACCTGCAA+TGG 0.548595 8_4:+18398549 Msa1317240:CDS
GAGCGGGCCTTGGAATCTCA+TGG 0.550025 8_4:-18399881 None:intergenic
ACACTCTCAAGGGTTTGTCT+TGG 0.554478 8_4:+18398404 Msa1317240:CDS
GATGAAGACTACATTGCAGC+AGG 0.558236 8_4:+18400147 Msa1317240:CDS
GTTAGGAGAGAAAACAGTGA+AGG 0.558766 8_4:+18398230 Msa1317240:CDS
AAGCAGTGATAAAAGTGTGA+TGG 0.568908 8_4:+18399924 Msa1317240:CDS
TGATGCTGCCTAAAGTTATG+TGG 0.570049 8_4:-18397985 None:intergenic
AGAACAATCATCACTTCCAC+TGG 0.572949 8_4:-18400568 None:intergenic
TAAGGGTCATAGTAATGGAA+AGG 0.576196 8_4:+18401109 Msa1317240:CDS
GAGATTCCAAGGCCCGCTCA+AGG 0.576812 8_4:+18399885 Msa1317240:CDS
TTAGGAGAGAAAACAGTGAA+GGG 0.577733 8_4:+18398231 Msa1317240:CDS
AAAGTGTGATGGAAACCAGA+TGG 0.581140 8_4:+18399935 Msa1317240:CDS
CTGGTATTGGGACGAGAAGA+CGG 0.587976 8_4:-18399353 None:intergenic
CTCTTTAAAATATCATCAAG+TGG 0.588090 8_4:+18402140 Msa1317240:three_prime_UTR
TCATGACCTGCAATGGAACA+AGG 0.588932 8_4:+18398556 Msa1317240:CDS
CAAATCTCTACCAGTGCCAA+TGG 0.588939 8_4:+18401657 Msa1317240:CDS
CGAATAAAGCTTAAATGGAG+AGG 0.589646 8_4:+18401895 Msa1317240:three_prime_UTR
GTGCACAATCTAGGTGACCT+TGG 0.592426 8_4:-18397778 None:intergenic
GGTTAAGTCACAAGCATCAG+AGG 0.593665 8_4:-18401084 None:intergenic
ATGACAGCAAATAGTGGGAG+AGG 0.595178 8_4:+18397718 Msa1317240:CDS
TTGGATGGATACATTGCATG+TGG 0.600527 8_4:+18401234 Msa1317240:CDS
TCGGCTGATTACAAAGTGTA+CGG 0.605940 8_4:+18400900 Msa1317240:CDS
TTGTTTCTAGTGTCTGCTGG+AGG 0.606239 8_4:+18401749 Msa1317240:CDS
AAGACATGACAGCAAATAGT+GGG 0.611577 8_4:+18397713 Msa1317240:exon
GCACAGGTATCCTGTTCCCA+AGG 0.614629 8_4:-18398585 None:intergenic
GAGAGTTATTGCTATTGGAG+AGG 0.615651 8_4:-18397354 None:intergenic
GGCGATAAGACGAAACAAGA+CGG 0.617468 8_4:-18398438 None:intergenic
AAAGCTTAAATGGAGAGGAG+AGG 0.619636 8_4:+18401900 Msa1317240:three_prime_UTR
ATTTCTATCACAAAATGCAA+AGG 0.621491 8_4:+18399295 Msa1317240:CDS
AATTGTGAAACTACTTCAGA+TGG 0.626139 8_4:+18401810 Msa1317240:CDS
ATTGTGCACACCTATTAGGA+AGG 0.627489 8_4:+18397792 Msa1317240:CDS
CTGGCATCAACTGATTATGA+TGG 0.627873 8_4:+18400309 Msa1317240:CDS
AGGAGGTCCAGATCCAGCAA+AGG 0.628561 8_4:-18397866 None:intergenic
TTTGTTTGACATCTCGACGA+CGG 0.632482 8_4:-18400241 None:intergenic
GAAGACTACATTGCAGCAGG+TGG 0.632505 8_4:+18400150 Msa1317240:CDS
AAATCAATGACCCTTTGCCA+AGG 0.639148 8_4:+18397761 Msa1317240:CDS
ATCAACTGATTATGATGGTG+TGG 0.639647 8_4:+18400314 Msa1317240:CDS
ACAAGCATCAGAGGACAACT+CGG 0.642038 8_4:-18401075 None:intergenic
TCATAATGTGATGTCTGGCG+CGG 0.644923 8_4:+18398266 Msa1317240:CDS
ATAACTTTAGGCAGCATCAG+AGG 0.649606 8_4:+18397989 Msa1317240:CDS
TACAGCAAGTTCGAAGAGCG+CGG 0.652487 8_4:+18400060 Msa1317240:CDS
ACTTAAGGCACATATCACAT+TGG 0.655318 8_4:-18400115 None:intergenic
TGCTGCCTAAAGTTATGTGG+AGG 0.655498 8_4:-18397982 None:intergenic
ATGTGGTTCAGAATCTAATG+AGG 0.656979 8_4:+18401251 Msa1317240:CDS
AATCACTTGAAATAGCATTG+AGG 0.657781 8_4:-18400200 None:intergenic
ATGGACTCAACTTAAGAGCG+TGG 0.658372 8_4:+18398301 Msa1317240:CDS
TAGCTTCAAAGAGTTATCAG+TGG 0.667175 8_4:-18401027 None:intergenic
AAATCACTCAGATTAAGCAA+AGG 0.669333 8_4:+18398069 Msa1317240:CDS
TTGTCCAGAAGTGCTCAATG+AGG 0.673641 8_4:+18398833 Msa1317240:CDS
TCAGCCACTGTCTCAATACA+CGG 0.673768 8_4:+18400488 Msa1317240:CDS
TCAAACAGTAGTGATAACAA+TGG 0.675011 8_4:+18401721 Msa1317240:CDS
AATGTGTTTAGGATCTGTGG+TGG 0.700851 8_4:-18397905 None:intergenic
AGATGATGTAGCTGACACAC+AGG 0.702078 8_4:+18399597 Msa1317240:CDS
GATGTATCGAATAGGAACAC+CGG 0.705814 8_4:+18402231 Msa1317240:three_prime_UTR
TGTTTGACATCTCGACGACG+GGG 0.706101 8_4:-18400239 None:intergenic
GCTGCCTAAAGTTATGTGGA+GGG 0.718131 8_4:-18397981 None:intergenic
TGCTCCGTGTATTGAGACAG+TGG 0.719956 8_4:-18400492 None:intergenic
TGACCAGGTAACGTACACCA+AGG 0.738718 8_4:-18400948 None:intergenic
CTGCAATGTAGTCTTCATCG+CGG 0.756043 8_4:-18400143 None:intergenic
TTTGAACGAAGATATCAAGG+AGG 0.768052 8_4:+18399696 Msa1317240:CDS
CAAACTATGGAATATCAGCG+AGG 0.779696 8_4:+18400593 Msa1317240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTATTTAATTTTATTCAA+CGG - chr8_4:18398462-18398481 None:intergenic 10.0%
!! TTGAATAAAATTAAATACAT+TGG + chr8_4:18398462-18398481 Msa1317240:CDS 10.0%
!!! GGTATATTATTTATTTTAGT+TGG + chr8_4:18397593-18397612 Msa1317240:intron 15.0%
!!! GTATATATTTAAACAGATTT+TGG + chr8_4:18398365-18398384 Msa1317240:CDS 15.0%
!!! TATCTTTTTTTATGTATAAC+AGG + chr8_4:18399500-18399519 Msa1317240:intron 15.0%
!! ATTAAAATATCGTTTAGTTA+TGG - chr8_4:18400657-18400676 None:intergenic 15.0%
!!! AAATCTTTTATTTTTTGGAT+CGG + chr8_4:18400881-18400900 Msa1317240:CDS 15.0%
!! TTATGATAAACTAATTTCTT+CGG - chr8_4:18401399-18401418 None:intergenic 15.0%
!!! TTAGTTTATCATAATTTTTG+TGG + chr8_4:18401405-18401424 Msa1317240:intron 15.0%
!!! TTTTTCTTTTTATTACTCTA+CGG + chr8_4:18401431-18401450 Msa1317240:intron 15.0%
!! TATTGAATTCAACTAATTAT+CGG - chr8_4:18401554-18401573 None:intergenic 15.0%
!! TTCTGAATTCAAGTATTTAT+TGG + chr8_4:18397288-18397307 Msa1317240:five_prime_UTR 20.0%
!! AGATATCAGAAAATTTAGAA+AGG - chr8_4:18397408-18397427 None:intergenic 20.0%
!! TGAATAGCATAAGATAAATT+TGG - chr8_4:18397503-18397522 None:intergenic 20.0%
!! ATTGATCTAAATTTGATTGA+AGG + chr8_4:18397667-18397686 Msa1317240:intron 20.0%
!! TTTAAATATATACAGCCTTA+AGG - chr8_4:18398358-18398377 None:intergenic 20.0%
!!! ATTTAAACAGATTTTGGAAT+TGG + chr8_4:18398371-18398390 Msa1317240:CDS 20.0%
!! TGAAACTTAACAAAATATCT+TGG - chr8_4:18398981-18399000 None:intergenic 20.0%
!! TCACTAATTAAAATAACCAT+AGG + chr8_4:18398998-18399017 Msa1317240:intron 20.0%
!! CACTAATTAAAATAACCATA+GGG + chr8_4:18398999-18399018 Msa1317240:intron 20.0%
!! ATAGGTTACGAATAATTATA+GGG - chr8_4:18399166-18399185 None:intergenic 20.0%
!! AATAGGTTACGAATAATTAT+AGG - chr8_4:18399167-18399186 None:intergenic 20.0%
!! CACTAAAATGTTAACAAAAT+AGG - chr8_4:18399184-18399203 None:intergenic 20.0%
!!! CTATTTTGTTAACATTTTAG+TGG + chr8_4:18399182-18399201 Msa1317240:intron 20.0%
!!! TCTGAATGTATGATTTTTAA+TGG + chr8_4:18399417-18399436 Msa1317240:intron 20.0%
!!! AGATCTACTAATAATTTTAC+TGG - chr8_4:18399794-18399813 None:intergenic 20.0%
!! AAAATAATTATCTCACAATG+CGG + chr8_4:18400777-18400796 Msa1317240:intron 20.0%
!!! TCCACAAATCTTTTATTTTT+TGG + chr8_4:18400876-18400895 Msa1317240:CDS 20.0%
!! TCCAAAAAATAAAAGATTTG+TGG - chr8_4:18400880-18400899 None:intergenic 20.0%
!! ATTGAATTCAACTAATTATC+GGG - chr8_4:18401553-18401572 None:intergenic 20.0%
!!! GCATATTTTGTTCATATTTT+AGG - chr8_4:18402042-18402061 None:intergenic 20.0%
! AGGATAAAATACAGAACATA+TGG - chr8_4:18397388-18397407 None:intergenic 25.0%
!! AACTTTTCAACAATGTGTTT+AGG - chr8_4:18397919-18397938 None:intergenic 25.0%
! TTGTTGAAAAGTTACATGTT+AGG + chr8_4:18397926-18397945 Msa1317240:CDS 25.0%
!! TATAAAGCTTTTGCGAATAT+AGG + chr8_4:18398135-18398154 Msa1317240:CDS 25.0%
! ATAAAGTGAAGAAAACCTTA+AGG + chr8_4:18398340-18398359 Msa1317240:CDS 25.0%
! TGTATCAATTTCATTTCCTA+AGG - chr8_4:18399048-18399067 None:intergenic 25.0%
!! TTTTGTGATAGAAATTTTGG+CGG - chr8_4:18399290-18399309 None:intergenic 25.0%
!! GCATTTTGTGATAGAAATTT+TGG - chr8_4:18399293-18399312 None:intergenic 25.0%
! ATTTCTATCACAAAATGCAA+AGG + chr8_4:18399295-18399314 Msa1317240:CDS 25.0%
! TGAAGAAGAAAAGAAAAAAC+AGG + chr8_4:18399645-18399664 Msa1317240:CDS 25.0%
!!! ATTTAGAGAATGTTGGTAAT+GGG + chr8_4:18399968-18399987 Msa1317240:CDS 25.0%
! CAGTTATATAAAAAACCATC+TGG + chr8_4:18400290-18400309 Msa1317240:CDS 25.0%
! AACATTAATGTTATGTGACA+TGG + chr8_4:18400435-18400454 Msa1317240:intron 25.0%
!! TTTTTGCAGAGAAATTCTAT+AGG + chr8_4:18400804-18400823 Msa1317240:intron 25.0%
! ACAAAAGAAAACAAAAAGTG+AGG - chr8_4:18401156-18401175 None:intergenic 25.0%
! TTGAATTCAATATCAAGTGA+GGG + chr8_4:18401562-18401581 Msa1317240:intron 25.0%
!!! TTCTATTTTTTCTACCTTTC+AGG + chr8_4:18401621-18401640 Msa1317240:intron 25.0%
!! TGTGACAGATACATTTTATT+TGG + chr8_4:18401833-18401852 Msa1317240:exon 25.0%
! AATGACGAATAAAGCTTAAA+TGG + chr8_4:18401890-18401909 Msa1317240:three_prime_UTR 25.0%
! GAGTTTAAATTGTTTCAAAG+AGG + chr8_4:18401928-18401947 Msa1317240:three_prime_UTR 25.0%
!!! TCTCTTTAGTTTTCATAGAT+AGG + chr8_4:18401963-18401982 Msa1317240:three_prime_UTR 25.0%
! CATCTGTGATTAAATTCAAA+AGG - chr8_4:18402102-18402121 None:intergenic 25.0%
!!! CTCTTTAAAATATCATCAAG+TGG + chr8_4:18402140-18402159 Msa1317240:three_prime_UTR 25.0%
! ATATATGTGATGTATCGAAT+AGG + chr8_4:18402223-18402242 Msa1317240:three_prime_UTR 25.0%
! ATTGTTATTCTCTCTCCAAA+GGG + chr8_4:18397441-18397460 Msa1317240:intron 30.0%
ATGTTCATGCAATCATTTGA+AGG + chr8_4:18397572-18397591 Msa1317240:intron 30.0%
! ATCACATTTTCCTTCCTAAT+AGG - chr8_4:18397805-18397824 None:intergenic 30.0%
ATTAGGAAGGAAAATGTGAT+TGG + chr8_4:18397805-18397824 Msa1317240:CDS 30.0%
AAGAACTTGAATGTAGCTTT+AGG + chr8_4:18397955-18397974 Msa1317240:CDS 30.0%
AAATCACTCAGATTAAGCAA+AGG + chr8_4:18398069-18398088 Msa1317240:CDS 30.0%
AGATTAAGCAAAGGACAAAA+GGG + chr8_4:18398078-18398097 Msa1317240:CDS 30.0%
! TTTTGCGAATATAGGCAATA+TGG + chr8_4:18398143-18398162 Msa1317240:CDS 30.0%
ATTCTTCATAATGTGATGTC+TGG + chr8_4:18398261-18398280 Msa1317240:CDS 30.0%
! ATACGGTGAAACATGATTTT+TGG - chr8_4:18398515-18398534 None:intergenic 30.0%
CTTAAGGCATGACTTAAATA+CGG - chr8_4:18398532-18398551 None:intergenic 30.0%
AAAAATGGACATGGAATCAA+GGG + chr8_4:18398704-18398723 Msa1317240:CDS 30.0%
!! AATCAAGGGTTGATAAAGAA+AGG + chr8_4:18398718-18398737 Msa1317240:CDS 30.0%
TCAACAAATGTTTATAGCCT+TGG + chr8_4:18398870-18398889 Msa1317240:CDS 30.0%
AAAATATCTTGGCTATCAAG+AGG - chr8_4:18398970-18398989 None:intergenic 30.0%
GCACAATTTAATCAAACCTT+AGG + chr8_4:18399029-18399048 Msa1317240:intron 30.0%
GCATAATTAATCCAAGAAGT+TGG - chr8_4:18399098-18399117 None:intergenic 30.0%
ATAATGCTTTACCTGGTATT+GGG - chr8_4:18399368-18399387 None:intergenic 30.0%
AATATTGCCATTGATGTTTG+AGG + chr8_4:18399447-18399466 Msa1317240:intron 30.0%
TGAATTTATACGCGAATTAG+AGG + chr8_4:18399537-18399556 Msa1317240:CDS 30.0%
GAAAAAACAGGAAGCTAAAT+TGG + chr8_4:18399657-18399676 Msa1317240:CDS 30.0%
TTGTTTGAACGAAGATATCA+AGG + chr8_4:18399693-18399712 Msa1317240:CDS 30.0%
GTAGAAAGAAATCATTCGTA+TGG + chr8_4:18399718-18399737 Msa1317240:CDS 30.0%
TAAGGTAGATAGTTCAATTG+TGG - chr8_4:18399760-18399779 None:intergenic 30.0%
TTACTGGAAGAATCATGATA+AGG - chr8_4:18399778-18399797 None:intergenic 30.0%
TTTGCTTCAACAAATGAACT+TGG - chr8_4:18399820-18399839 None:intergenic 30.0%
TTACCAACATTCTCTAAATG+AGG - chr8_4:18399967-18399986 None:intergenic 30.0%
! CATTTAGAGAATGTTGGTAA+TGG + chr8_4:18399967-18399986 Msa1317240:CDS 30.0%
ATAGAACCTTGAATTCTCTT+TGG - chr8_4:18399994-18400013 None:intergenic 30.0%
AAGAGAATTCAAGGTTCTAT+TGG + chr8_4:18399994-18400013 Msa1317240:CDS 30.0%
TTGCATATACCTTCATAGAA+AGG - chr8_4:18400030-18400049 None:intergenic 30.0%
AATCACTTGAAATAGCATTG+AGG - chr8_4:18400203-18400222 None:intergenic 30.0%
TTAATGTTATGTGACATGGT+TGG + chr8_4:18400439-18400458 Msa1317240:intron 30.0%
ATGATTGTTCTGTCAAACTA+TGG + chr8_4:18400580-18400599 Msa1317240:CDS 30.0%
TTCGTAACACTAAAATTCCT+TGG + chr8_4:18400931-18400950 Msa1317240:CDS 30.0%
!!! TTTCGTTGGTTTATCTGTTT+TGG + chr8_4:18401215-18401234 Msa1317240:CDS 30.0%
ATATAGTACAATAGTCTGTC+TGG + chr8_4:18401309-18401328 Msa1317240:intron 30.0%
GTTGAATTCAATATCAAGTG+AGG + chr8_4:18401561-18401580 Msa1317240:intron 30.0%
TCAAACAGTAGTGATAACAA+TGG + chr8_4:18401721-18401740 Msa1317240:CDS 30.0%
AATTGTGAAACTACTTCAGA+TGG + chr8_4:18401810-18401829 Msa1317240:CDS 30.0%
AACCAGAGAGTTATTGCTAT+TGG - chr8_4:18397362-18397381 None:intergenic 35.0%
! CATTGTTATTCTCTCTCCAA+AGG + chr8_4:18397440-18397459 Msa1317240:intron 35.0%
CAATGAACAAAGTAACCCTT+TGG - chr8_4:18397459-18397478 None:intergenic 35.0%
! CAAAGGGTTACTTTGTTCAT+TGG + chr8_4:18397457-18397476 Msa1317240:intron 35.0%
ATTGAAGGAACTGCATGAAT+TGG + chr8_4:18397682-18397701 Msa1317240:intron 35.0%
TAAGACATGACAGCAAATAG+TGG + chr8_4:18397712-18397731 Msa1317240:exon 35.0%
AAGACATGACAGCAAATAGT+GGG + chr8_4:18397713-18397732 Msa1317240:exon 35.0%
! AGAAATTTTGCTTCCTTTGC+TGG + chr8_4:18397853-18397872 Msa1317240:CDS 35.0%
GAACAAAAACTAGTACTAGG+AGG - chr8_4:18397886-18397905 None:intergenic 35.0%
GTGGAACAAAAACTAGTACT+AGG - chr8_4:18397889-18397908 None:intergenic 35.0%
! AACAATGTGTTTAGGATCTG+TGG - chr8_4:18397911-18397930 None:intergenic 35.0%
CAGATTAAGCAAAGGACAAA+AGG + chr8_4:18398077-18398096 Msa1317240:CDS 35.0%
TCTAGTTATCCTCAGTTGTT+AGG + chr8_4:18398213-18398232 Msa1317240:CDS 35.0%
TTAGGAGAGAAAACAGTGAA+GGG + chr8_4:18398231-18398250 Msa1317240:CDS 35.0%
! TTGATTTTGCACACTCTCAA+GGG + chr8_4:18398394-18398413 Msa1317240:CDS 35.0%
TTTGGTCATCAAACACATGT+TGG - chr8_4:18398497-18398516 None:intergenic 35.0%
CGTATTTAAGTCATGCCTTA+AGG + chr8_4:18398530-18398549 Msa1317240:CDS 35.0%
! GCTTCTTTGCACTCAAATTT+TGG - chr8_4:18398614-18398633 None:intergenic 35.0%
CATCACTTCAACTGTATTCA+TGG + chr8_4:18398672-18398691 Msa1317240:CDS 35.0%
CAAAAATGGACATGGAATCA+AGG + chr8_4:18398703-18398722 Msa1317240:CDS 35.0%
CAATTCAGTTTGAAGAGAAG+TGG + chr8_4:18398805-18398824 Msa1317240:CDS 35.0%
GAGGAAATTATGCAGGATAA+AGG - chr8_4:18398951-18398970 None:intergenic 35.0%
CTATCAAGAGGAAATTATGC+AGG - chr8_4:18398958-18398977 None:intergenic 35.0%
! CAAGTTTTCTTCCAACTTCT+TGG + chr8_4:18399084-18399103 Msa1317240:intron 35.0%
CATAATGCTTTACCTGGTAT+TGG - chr8_4:18399369-18399388 None:intergenic 35.0%
GAATAGTCCTCAAACATCAA+TGG - chr8_4:18399457-18399476 None:intergenic 35.0%
!! GAATTAGAGGCATCAAATTC+TGG + chr8_4:18399550-18399569 Msa1317240:CDS 35.0%
TTTGAACGAAGATATCAAGG+AGG + chr8_4:18399696-18399715 Msa1317240:CDS 35.0%
!! ACTTTTATCACTGCTTTTGG+CGG - chr8_4:18399920-18399939 None:intergenic 35.0%
! CACACTTTTATCACTGCTTT+TGG - chr8_4:18399923-18399942 None:intergenic 35.0%
! AAGCAGTGATAAAAGTGTGA+TGG + chr8_4:18399924-18399943 Msa1317240:CDS 35.0%
TTGCCTCATTTAGAGAATGT+TGG + chr8_4:18399961-18399980 Msa1317240:CDS 35.0%
ACTTAAGGCACATATCACAT+TGG - chr8_4:18400118-18400137 None:intergenic 35.0%
! ATCAACTGATTATGATGGTG+TGG + chr8_4:18400314-18400333 Msa1317240:CDS 35.0%
! TTCCACTGGCAAACATTTTT+GGG - chr8_4:18400557-18400576 None:intergenic 35.0%
TATAGGAACCATAATGAGTC+CGG + chr8_4:18400821-18400840 Msa1317240:CDS 35.0%
TGAACACAACATACATTTGC+CGG - chr8_4:18400843-18400862 None:intergenic 35.0%
TAGCTTCAAAGAGTTATCAG+TGG - chr8_4:18401030-18401049 None:intergenic 35.0%
!! CTGATAACTCTTTGAAGCTA+TGG + chr8_4:18401030-18401049 Msa1317240:CDS 35.0%
TGCTTGTGACTTAACCTTTA+AGG + chr8_4:18401091-18401110 Msa1317240:CDS 35.0%
GCTTGTGACTTAACCTTTAA+GGG + chr8_4:18401092-18401111 Msa1317240:CDS 35.0%
! ACCTTTAAGGGTCATAGTAA+TGG + chr8_4:18401104-18401123 Msa1317240:CDS 35.0%
TCCATTACTATGACCCTTAA+AGG - chr8_4:18401108-18401127 None:intergenic 35.0%
! TAAGGGTCATAGTAATGGAA+AGG + chr8_4:18401109-18401128 Msa1317240:CDS 35.0%
TTTCTTCTCCAGAATTTCGT+TGG + chr8_4:18401201-18401220 Msa1317240:intron 35.0%
CAGATAAACCAACGAAATTC+TGG - chr8_4:18401212-18401231 None:intergenic 35.0%
!! GTTGGTTTATCTGTTTTGGA+TGG + chr8_4:18401219-18401238 Msa1317240:CDS 35.0%
ATGTGGTTCAGAATCTAATG+AGG + chr8_4:18401251-18401270 Msa1317240:CDS 35.0%
ATGTAGCGTAGAATGTGAAA+CGG - chr8_4:18401372-18401391 None:intergenic 35.0%
TTCACATTCTACGCTACATT+TGG + chr8_4:18401373-18401392 Msa1317240:intron 35.0%
! TTTATTACTCTACGGCGTTT+TGG + chr8_4:18401439-18401458 Msa1317240:intron 35.0%
! TTATTACTCTACGGCGTTTT+GGG + chr8_4:18401440-18401459 Msa1317240:intron 35.0%
GTGATAACAGTAAACCTGAA+AGG - chr8_4:18401638-18401657 None:intergenic 35.0%
CTGTTTGAATGACCAGAAAT+GGG - chr8_4:18401709-18401728 None:intergenic 35.0%
ACTGTTTGAATGACCAGAAA+TGG - chr8_4:18401710-18401729 None:intergenic 35.0%
TTTCACAATTCCAACTGAGT+TGG - chr8_4:18401800-18401819 None:intergenic 35.0%
CTAAGACCAGTGATTTATTC+AGG + chr8_4:18401856-18401875 Msa1317240:three_prime_UTR 35.0%
TTGAAGCCTGAATAAATCAC+TGG - chr8_4:18401865-18401884 None:intergenic 35.0%
CGAATAAAGCTTAAATGGAG+AGG + chr8_4:18401895-18401914 Msa1317240:three_prime_UTR 35.0%
TGCTTCATACATCTCTTGTT+CGG - chr8_4:18402064-18402083 None:intergenic 35.0%
! GAGAGTTATTGCTATTGGAG+AGG - chr8_4:18397357-18397376 None:intergenic 40.0%
CTCCAATAGCAATAACTCTC+TGG + chr8_4:18397357-18397376 Msa1317240:five_prime_UTR 40.0%
AAATCAATGACCCTTTGCCA+AGG + chr8_4:18397761-18397780 Msa1317240:CDS 40.0%
CTAATAGGTGTGCACAATCT+AGG - chr8_4:18397790-18397809 None:intergenic 40.0%
CTAGATTGTGCACACCTATT+AGG + chr8_4:18397788-18397807 Msa1317240:CDS 40.0%
ATTGTGCACACCTATTAGGA+AGG + chr8_4:18397792-18397811 Msa1317240:CDS 40.0%
! AATGTGTTTAGGATCTGTGG+TGG - chr8_4:18397908-18397927 None:intergenic 40.0%
GTATCCCTCCACATAACTTT+AGG + chr8_4:18397977-18397996 Msa1317240:CDS 40.0%
TGATGCTGCCTAAAGTTATG+TGG - chr8_4:18397988-18398007 None:intergenic 40.0%
ATAACTTTAGGCAGCATCAG+AGG + chr8_4:18397989-18398008 Msa1317240:CDS 40.0%
CTAGATGTAGCTGAAGAACT+TGG - chr8_4:18398198-18398217 None:intergenic 40.0%
! GTTTTCTCTCCTAACAACTG+AGG - chr8_4:18398225-18398244 None:intergenic 40.0%
GTTAGGAGAGAAAACAGTGA+AGG + chr8_4:18398230-18398249 Msa1317240:CDS 40.0%
AGAGAAAACAGTGAAGGGAA+AGG + chr8_4:18398236-18398255 Msa1317240:CDS 40.0%
GAGAAAACAGTGAAGGGAAA+GGG + chr8_4:18398237-18398256 Msa1317240:CDS 40.0%
!! GTTGATTTTGCACACTCTCA+AGG + chr8_4:18398393-18398412 Msa1317240:CDS 40.0%
! CATTTTCCTTGTTCCATTGC+AGG - chr8_4:18398565-18398584 None:intergenic 40.0%
ATGGAACAAGGAAAATGCCT+TGG + chr8_4:18398568-18398587 Msa1317240:CDS 40.0%
TGGAACAAGGAAAATGCCTT+GGG + chr8_4:18398569-18398588 Msa1317240:CDS 40.0%
!! ACTCAAATTTTGGCATGCAC+AGG - chr8_4:18398604-18398623 None:intergenic 40.0%
TGAAGAGACAGCATCTCTTA+AGG + chr8_4:18398644-18398663 Msa1317240:CDS 40.0%
TCATGGCTGTGACACAAAAA+TGG + chr8_4:18398689-18398708 Msa1317240:CDS 40.0%
CTGTGACACAAAAATGGACA+TGG + chr8_4:18398695-18398714 Msa1317240:CDS 40.0%
CCTCAAAAAGAAGAACTCCA+AGG - chr8_4:18398890-18398909 None:intergenic 40.0%
! CCTTGGAGTTCTTCTTTTTG+AGG + chr8_4:18398887-18398906 Msa1317240:CDS 40.0%
AATTGTGCATAACAGCCCTA+TGG - chr8_4:18399017-18399036 None:intergenic 40.0%
GCTGTGCAATATTGAGTCAT+TGG + chr8_4:18399220-18399239 Msa1317240:CDS 40.0%
TCACAAAATGCAAAGGAAGC+TGG + chr8_4:18399302-18399321 Msa1317240:CDS 40.0%
!!! AGGAAGCTGGTTTTTGTCTA+TGG + chr8_4:18399315-18399334 Msa1317240:CDS 40.0%
TACTTCTCCATGAGATTCCA+AGG + chr8_4:18399874-18399893 Msa1317240:CDS 40.0%
! AAAGTGTGATGGAAACCAGA+TGG + chr8_4:18399935-18399954 Msa1317240:CDS 40.0%
TAAATGAGGCAATCTCCATC+TGG - chr8_4:18399953-18399972 None:intergenic 40.0%
AATGGGCCAAAGAGAATTCA+AGG + chr8_4:18399985-18400004 Msa1317240:CDS 40.0%
! CAAGGTTCTATTGGTTGTCT+AGG + chr8_4:18400003-18400022 Msa1317240:CDS 40.0%
! TGTCTAGGACCTTTCTATGA+AGG + chr8_4:18400018-18400037 Msa1317240:CDS 40.0%
TTCATCGCGGTCAAAACTTA+AGG - chr8_4:18400133-18400152 None:intergenic 40.0%
TTTGTTTGACATCTCGACGA+CGG - chr8_4:18400244-18400263 None:intergenic 40.0%
! CATAATCAGTTGATGCCAGA+TGG - chr8_4:18400308-18400327 None:intergenic 40.0%
CTGGCATCAACTGATTATGA+TGG + chr8_4:18400309-18400328 Msa1317240:CDS 40.0%
! TGATTATGATGGTGTGGTTC+AGG + chr8_4:18400320-18400339 Msa1317240:CDS 40.0%
ACATGGTTGGATTCAGATGT+GGG + chr8_4:18400452-18400471 Msa1317240:intron 40.0%
!! AGCTTGGTCTGTTCACTTTT+CGG + chr8_4:18400524-18400543 Msa1317240:CDS 40.0%
!!! ACTGGCAAACATTTTTGGGT+CGG - chr8_4:18400553-18400572 None:intergenic 40.0%
! CTTCCACTGGCAAACATTTT+TGG - chr8_4:18400558-18400577 None:intergenic 40.0%
AGAACAATCATCACTTCCAC+TGG - chr8_4:18400571-18400590 None:intergenic 40.0%
CAAACTATGGAATATCAGCG+AGG + chr8_4:18400593-18400612 Msa1317240:CDS 40.0%
TACATTTGCCGGACTCATTA+TGG - chr8_4:18400832-18400851 None:intergenic 40.0%
TCGGCTGATTACAAAGTGTA+CGG + chr8_4:18400900-18400919 Msa1317240:CDS 40.0%
! GGTCATAGTAATGGAAAGGT+TGG + chr8_4:18401113-18401132 Msa1317240:intron 40.0%
TTGGATGGATACATTGCATG+TGG + chr8_4:18401234-18401253 Msa1317240:CDS 40.0%
TAATTATCGGGTATCTGCGA+AGG - chr8_4:18401541-18401560 None:intergenic 40.0%
TCGAATTTGTGAGAAGCCAT+TGG - chr8_4:18401676-18401695 None:intergenic 40.0%
!! AGTTTGTTTCTAGTGTCTGC+TGG + chr8_4:18401746-18401765 Msa1317240:CDS 40.0%
AAAGCTTAAATGGAGAGGAG+AGG + chr8_4:18401900-18401919 Msa1317240:three_prime_UTR 40.0%
AAGCTTAAATGGAGAGGAGA+GGG + chr8_4:18401901-18401920 Msa1317240:three_prime_UTR 40.0%
GATGTATCGAATAGGAACAC+CGG + chr8_4:18402231-18402250 Msa1317240:three_prime_UTR 40.0%
! ATGACAGCAAATAGTGGGAG+AGG + chr8_4:18397718-18397737 Msa1317240:CDS 45.0%
! GAGGAACTGAAGAGCATAAG+AGG + chr8_4:18397737-18397756 Msa1317240:CDS 45.0%
ATCTAGGTGACCTTGGCAAA+GGG - chr8_4:18397774-18397793 None:intergenic 45.0%
AATCTAGGTGACCTTGGCAA+AGG - chr8_4:18397775-18397794 None:intergenic 45.0%
TTTGCTTCCTTTGCTGGATC+TGG + chr8_4:18397859-18397878 Msa1317240:CDS 45.0%
GCTGCCTAAAGTTATGTGGA+GGG - chr8_4:18397984-18398003 None:intergenic 45.0%
TGCTGCCTAAAGTTATGTGG+AGG - chr8_4:18397985-18398004 None:intergenic 45.0%
CAGCATCAGAGGAATCAGTT+AGG + chr8_4:18398000-18398019 Msa1317240:CDS 45.0%
TCATAATGTGATGTCTGGCG+CGG + chr8_4:18398266-18398285 Msa1317240:CDS 45.0%
ATGGACTCAACTTAAGAGCG+TGG + chr8_4:18398301-18398320 Msa1317240:CDS 45.0%
ACACTCTCAAGGGTTTGTCT+TGG + chr8_4:18398404-18398423 Msa1317240:CDS 45.0%
GGCGATAAGACGAAACAAGA+CGG - chr8_4:18398441-18398460 None:intergenic 45.0%
TGTTCCATTGCAGGTCATGA+TGG - chr8_4:18398556-18398575 None:intergenic 45.0%
TCATGACCTGCAATGGAACA+AGG + chr8_4:18398556-18398575 Msa1317240:CDS 45.0%
AAGGAAAATGCCTTGGGAAC+AGG + chr8_4:18398575-18398594 Msa1317240:CDS 45.0%
AAAGAAAGGCTGTGCGTTGA+TGG + chr8_4:18398732-18398751 Msa1317240:CDS 45.0%
!! TTGTCCAGAAGTGCTCAATG+AGG + chr8_4:18398833-18398852 Msa1317240:CDS 45.0%
GTTTCCTCATTGAGCACTTC+TGG - chr8_4:18398840-18398859 None:intergenic 45.0%
CAGCAGCATAATGCTTTACC+TGG - chr8_4:18399375-18399394 None:intergenic 45.0%
AGATGATGTAGCTGACACAC+AGG + chr8_4:18399597-18399616 Msa1317240:CDS 45.0%
CTGCAATGTAGTCTTCATCG+CGG - chr8_4:18400146-18400165 None:intergenic 45.0%
GATGAAGACTACATTGCAGC+AGG + chr8_4:18400147-18400166 Msa1317240:CDS 45.0%
TTGTTTGACATCTCGACGAC+GGG - chr8_4:18400243-18400262 None:intergenic 45.0%
GACATGGTTGGATTCAGATG+TGG + chr8_4:18400451-18400470 Msa1317240:intron 45.0%
TCAGCCACTGTCTCAATACA+CGG + chr8_4:18400488-18400507 Msa1317240:CDS 45.0%
! GAACAGACCAAGCTCTCTTT+TGG - chr8_4:18400518-18400537 None:intergenic 45.0%
GACCCAAAAATGTTTGCCAG+TGG + chr8_4:18400552-18400571 Msa1317240:CDS 45.0%
! ATTCCTTGGTGTACGTTACC+TGG + chr8_4:18400945-18400964 Msa1317240:CDS 45.0%
! CTAACAGCTTTTCCATGACC+AGG - chr8_4:18400966-18400985 None:intergenic 45.0%
ACAAGCATCAGAGGACAACT+CGG - chr8_4:18401078-18401097 None:intergenic 45.0%
GGTTAAGTCACAAGCATCAG+AGG - chr8_4:18401087-18401106 None:intergenic 45.0%
CAATAGTCTGTCTGGATCTC+TGG + chr8_4:18401317-18401336 Msa1317240:intron 45.0%
CAAATCTCTACCAGTGCCAA+TGG + chr8_4:18401657-18401676 Msa1317240:CDS 45.0%
GAGTCAATCGATCCCATTTC+TGG + chr8_4:18401694-18401713 Msa1317240:CDS 45.0%
!! TTGTTTCTAGTGTCTGCTGG+AGG + chr8_4:18401749-18401768 Msa1317240:CDS 45.0%
GTGCACAATCTAGGTGACCT+TGG - chr8_4:18397781-18397800 None:intergenic 50.0%
!!! GGCGCGGAATGTTTTAACGA+TGG + chr8_4:18398282-18398301 Msa1317240:CDS 50.0%
! TGCAGGTCATGATGGCCTTA+AGG - chr8_4:18398548-18398567 None:intergenic 50.0%
AAGGCCATCATGACCTGCAA+TGG + chr8_4:18398549-18398568 Msa1317240:CDS 50.0%
! CTGGTATTGGGACGAGAAGA+CGG - chr8_4:18399356-18399375 None:intergenic 50.0%
TACAGCAAGTTCGAAGAGCG+CGG + chr8_4:18400060-18400079 Msa1317240:CDS 50.0%
GAAGACTACATTGCAGCAGG+TGG + chr8_4:18400150-18400169 Msa1317240:CDS 50.0%
TGTTTGACATCTCGACGACG+GGG - chr8_4:18400242-18400261 None:intergenic 50.0%
CAAAGCTCAGTTGTGTGTGC+TGG + chr8_4:18400265-18400284 Msa1317240:CDS 50.0%
TGGATTCAGATGTGGGATGC+AGG + chr8_4:18400459-18400478 Msa1317240:intron 50.0%
TGCTCCGTGTATTGAGACAG+TGG - chr8_4:18400495-18400514 None:intergenic 50.0%
TGACCAGGTAACGTACACCA+AGG - chr8_4:18400951-18400970 None:intergenic 50.0%
TGGTGTACGTTACCTGGTCA+TGG + chr8_4:18400951-18400970 Msa1317240:CDS 50.0%
TTGTGAGAAGCCATTGGCAC+TGG - chr8_4:18401670-18401689 None:intergenic 50.0%
CTTGTTGCAGCCAACTCAGT+TGG + chr8_4:18401787-18401806 Msa1317240:CDS 50.0%
AGGAGGTCCAGATCCAGCAA+AGG - chr8_4:18397869-18397888 None:intergenic 55.0%
GCACAGGTATCCTGTTCCCA+AGG - chr8_4:18398588-18398607 None:intergenic 55.0%
TTGGGACGAGAAGACGGTTC+AGG - chr8_4:18399350-18399369 None:intergenic 55.0%
CGTCTTCTCGTCCCAATACC+AGG + chr8_4:18399354-18399373 Msa1317240:CDS 55.0%
! CGGAGCACCAAAAGAGAGCT+TGG + chr8_4:18400508-18400527 Msa1317240:CDS 55.0%
GAGCGGGCCTTGGAATCTCA+TGG - chr8_4:18399884-18399903 None:intergenic 60.0%
GAGATTCCAAGGCCCGCTCA+AGG + chr8_4:18399885-18399904 Msa1317240:CDS 60.0%
CAGATGTGGGATGCAGGCAC+TGG + chr8_4:18400465-18400484 Msa1317240:intron 60.0%
CAGCTTCCTTGAGCGGGCCT+TGG - chr8_4:18399894-18399913 None:intergenic 65.0%
CGGCTGCAGCTTCCTTGAGC+GGG - chr8_4:18399900-18399919 None:intergenic 65.0%
GCGGCTGCAGCTTCCTTGAG+CGG - chr8_4:18399901-18399920 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 18397278 18402265 18397278 ID=Msa1317240;Name=Msa1317240
chr8_4 mRNA 18397278 18402265 18397278 ID=Msa1317240-mRNA-1;Parent=Msa1317240;Name=Msa1317240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=130|1|1|1|0.85|0.75|8|428|962
chr8_4 exon 18397278 18397378 18397278 ID=Msa1317240-mRNA-1:exon:6785;Parent=Msa1317240-mRNA-1
chr8_4 exon 18397689 18398908 18397689 ID=Msa1317240-mRNA-1:exon:6786;Parent=Msa1317240-mRNA-1
chr8_4 exon 18399218 18399375 18399218 ID=Msa1317240-mRNA-1:exon:6787;Parent=Msa1317240-mRNA-1
chr8_4 exon 18399522 18400341 18399522 ID=Msa1317240-mRNA-1:exon:6788;Parent=Msa1317240-mRNA-1
chr8_4 exon 18400468 18400614 18400468 ID=Msa1317240-mRNA-1:exon:6789;Parent=Msa1317240-mRNA-1
chr8_4 exon 18400813 18401130 18400813 ID=Msa1317240-mRNA-1:exon:6790;Parent=Msa1317240-mRNA-1
chr8_4 exon 18401213 18401272 18401213 ID=Msa1317240-mRNA-1:exon:6791;Parent=Msa1317240-mRNA-1
chr8_4 exon 18401643 18402265 18401643 ID=Msa1317240-mRNA-1:exon:6792;Parent=Msa1317240-mRNA-1
chr8_4 five_prime_UTR 18397278 18397378 18397278 ID=Msa1317240-mRNA-1:five_prime_utr;Parent=Msa1317240-mRNA-1
chr8_4 five_prime_UTR 18397689 18397717 18397689 ID=Msa1317240-mRNA-1:five_prime_utr;Parent=Msa1317240-mRNA-1
chr8_4 CDS 18397718 18398908 18397718 ID=Msa1317240-mRNA-1:cds;Parent=Msa1317240-mRNA-1
chr8_4 CDS 18399218 18399375 18399218 ID=Msa1317240-mRNA-1:cds;Parent=Msa1317240-mRNA-1
chr8_4 CDS 18399522 18400341 18399522 ID=Msa1317240-mRNA-1:cds;Parent=Msa1317240-mRNA-1
chr8_4 CDS 18400468 18400614 18400468 ID=Msa1317240-mRNA-1:cds;Parent=Msa1317240-mRNA-1
chr8_4 CDS 18400813 18401130 18400813 ID=Msa1317240-mRNA-1:cds;Parent=Msa1317240-mRNA-1
chr8_4 CDS 18401213 18401272 18401213 ID=Msa1317240-mRNA-1:cds;Parent=Msa1317240-mRNA-1
chr8_4 CDS 18401643 18401837 18401643 ID=Msa1317240-mRNA-1:cds;Parent=Msa1317240-mRNA-1
chr8_4 three_prime_UTR 18401838 18402265 18401838 ID=Msa1317240-mRNA-1:three_prime_utr;Parent=Msa1317240-mRNA-1
Gene Sequence

>Msa1317240

ATGACAGCAAATAGTGGGAGAGGAACTGAAGAGCATAAGAGGAAAATCAATGACCCTTTGCCAAGGTCACCTAGATTGTGCACACCTATTAGGAAGGAAAATGTGATTGGTAATGAGAATAATAATATTTTGACTAGAAATTTTGCTTCCTTTGCTGGATCTGGACCTCCTAGTACTAGTTTTTGTTCCACCACAGATCCTAAACACATTGTTGAAAAGTTACATGTTAGGAATAATAAGAACTTGAATGTAGCTTTAGGTATCCCTCCACATAACTTTAGGCAGCATCAGAGGAATCAGTTAGGTATTGAGTCTAAGTATAATAATAGCTTGAGTAGAGAAATTGCACAGAAATCACTCAGATTAAGCAAAGGACAAAAGGGAATTGATTCTAGAAGAAACTTGAATCATGAACAGTATAAAGCTTTTGCGAATATAGGCAATATGGATAATACACATTTTGTTAGCAGTAAAATGCCAAGTTCTTCAGCTACATCTAGTTATCCTCAGTTGTTAGGAGAGAAAACAGTGAAGGGAAAGGGAATTCTTCATAATGTGATGTCTGGCGCGGAATGTTTTAACGATGGACTCAACTTAAGAGCGTGGATGAAGTCTGAAAGTCATAAAGTGAAGAAAACCTTAAGGCTGTATATATTTAAACAGATTTTGGAATTGGTTGATTTTGCACACTCTCAAGGGTTTGTCTTGGAAGACATAAAACCGTCTTGTTTCGTCTTATCGCCGTTGAATAAAATTAAATACATTGGTTCATATAGCCAACATGTGTTTGATGACCAAAAATCATGTTTCACCGTATTTAAGTCATGCCTTAAGGCCATCATGACCTGCAATGGAACAAGGAAAATGCCTTGGGAACAGGATACCTGTGCATGCCAAAATTTGAGTGCAAAGAAGCAAAAGCTATGTGAAGAGACAGCATCTCTTAAGGAGCAGCATCACTTCAACTGTATTCATGGCTGTGACACAAAAATGGACATGGAATCAAGGGTTGATAAAGAAAGGCTGTGCGTTGATGGTTCGAGTTATCAACATGCTTTTGCAGAAGAAAAACAGTTTATTTCTGAAACAATTCAGTTTGAAGAGAAGTGGTATTCTTGTCCAGAAGTGCTCAATGAGGAAACTTGTACATTTTCAACAAATGTTTATAGCCTTGGAGTTCTTCTTTTTGAGTTGCTGTGCAATATTGAGTCATTGGAAGCACATTCAACTGTGATGTTTGATATGCGTCATAGAATCTTGCCGCCAAAATTTCTATCACAAAATGCAAAGGAAGCTGGTTTTTGTCTATGGCTTCTACATCCTGAACCGTCTTCTCGTCCCAATACCAGGATGATTTTAGAATCTGAATTTATACGCGAATTAGAGGCATCAAATTCTGGTGATAATAATGTTATAGTATCTGAAGATGATGTAGCTGACACACAGGAATTACTGCATTTTCTAATTTCAGTTGAAGAAGAAAAGAAAAAACAGGAAGCTAAATTGGCAGAAGAGCTACATTGTTTGAACGAAGATATCAAGGAGGTAGAAAGAAATCATTCGTATGGAAGTGATTCAGCATTTCCACAATTGAACTATCTACCTTATCATGATTCTTCCAGTAAAATTATTAGTAGATCTTTTCCAAGTTCATTTGTTGAAGCAAAATTTATGAATAACATAAGTCAGCTAGAGAATAGTTACTTCTCCATGAGATTCCAAGGCCCGCTCAAGGAAGCTGCAGCCGCCAAAAGCAGTGATAAAAGTGTGATGGAAACCAGATGGAGATTGCCTCATTTAGAGAATGTTGGTAATGGGCCAAAGAGAATTCAAGGTTCTATTGGTTGTCTAGGACCTTTCTATGAAGGTATATGCAAATTCGCTCGTTACAGCAAGTTCGAAGAGCGCGGAACATTGAGAAACAGTGATCTTCTTAGTTCTGCCAATGTGATATGTGCCTTAAGTTTTGACCGCGATGAAGACTACATTGCAGCAGGTGGAATTTCAAAGAAAATAAAGATATTTGACCTCAATGCTATTTCAAGTGATTCTACAGACATTCAGTACCCCGTCGTCGAGATGTCAAACAAATCAAAGCTCAGTTGTGTGTGCTGGAACAGTTATATAAAAAACCATCTGGCATCAACTGATTATGATGGTGTGGTTCAGATGTGGGATGCAGGCACTGGTCAGCCACTGTCTCAATACACGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCGGCGTCCGACCCAAAAATGTTTGCCAGTGGAAGTGATGATTGTTCTGTCAAACTATGGAATATCAGCGAGAGAAATTCTATAGGAACCATAATGAGTCCGGCAAATGTATGTTGTGTTCAGTTCTCTGAATACTCCACAAATCTTTTATTTTTTGGATCGGCTGATTACAAAGTGTACGGTTATGATCTTCGTAACACTAAAATTCCTTGGTGTACGTTACCTGGTCATGGAAAAGCTGTTAGCTATGTAAAGTTTATAGATGCACAAACAGTTGTGTCTGCTTCCACTGATAACTCTTTGAAGCTATGGAACTTGAAGAAAACTAGCTCAACCGAGTTGTCCTCTGATGCTTGTGACTTAACCTTTAAGGGTCATAGTAATGGAAAGAATTTCGTTGGTTTATCTGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTTTACTGTTATCACAAATCTCTACCAGTGCCAATGGCTTCTCACAAATTCGAGTCAATCGATCCCATTTCTGGTCATTCAAACAGTAGTGATAACAATGGACAGTTTGTTTCTAGTGTCTGCTGGAGGAAGAAGTCTAACATGCTTGTTGCAGCCAACTCAGTTGGAATTGTGAAACTACTTCAGATGGTGTGA

Protein sequence

>Msa1317240

MTANSGRGTEEHKRKINDPLPRSPRLCTPIRKENVIGNENNNILTRNFASFAGSGPPSTSFCSTTDPKHIVEKLHVRNNKNLNVALGIPPHNFRQHQRNQLGIESKYNNSLSREIAQKSLRLSKGQKGIDSRRNLNHEQYKAFANIGNMDNTHFVSSKMPSSSATSSYPQLLGEKTVKGKGILHNVMSGAECFNDGLNLRAWMKSESHKVKKTLRLYIFKQILELVDFAHSQGFVLEDIKPSCFVLSPLNKIKYIGSYSQHVFDDQKSCFTVFKSCLKAIMTCNGTRKMPWEQDTCACQNLSAKKQKLCEETASLKEQHHFNCIHGCDTKMDMESRVDKERLCVDGSSYQHAFAEEKQFISETIQFEEKWYSCPEVLNEETCTFSTNVYSLGVLLFELLCNIESLEAHSTVMFDMRHRILPPKFLSQNAKEAGFCLWLLHPEPSSRPNTRMILESEFIRELEASNSGDNNVIVSEDDVADTQELLHFLISVEEEKKKQEAKLAEELHCLNEDIKEVERNHSYGSDSAFPQLNYLPYHDSSSKIISRSFPSSFVEAKFMNNISQLENSYFSMRFQGPLKEAAAAKSSDKSVMETRWRLPHLENVGNGPKRIQGSIGCLGPFYEGICKFARYSKFEERGTLRNSDLLSSANVICALSFDRDEDYIAAGGISKKIKIFDLNAISSDSTDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDAGTGQPLSQYTEHQKRAWSVHFSASDPKMFASGSDDCSVKLWNISERNSIGTIMSPANVCCVQFSEYSTNLLFFGSADYKVYGYDLRNTKIPWCTLPGHGKAVSYVKFIDAQTVVSASTDNSLKLWNLKKTSSTELSSDACDLTFKGHSNGKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPMASHKFESIDPISGHSNSSDNNGQFVSSVCWRKKSNMLVAANSVGIVKLLQMV*