AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1236860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236860 MtrunA17_Chr8g0347471 94.332 988 30 5 1 963 1 987 0.0 1921
Msa1236860 MtrunA17_Chr5g0396821 49.879 824 311 16 183 963 270 1034 0.0 724
Msa1236860 MtrunA17_Chr2g0317491 39.057 827 421 15 192 963 77 875 6.39e-177 536
Msa1236860 MtrunA17_Chr5g0438901 43.855 358 182 4 606 962 336 675 4.48e-99 325
Msa1236860 MtrunA17_Chr2g0283891 24.908 273 173 10 642 904 60 310 2.13e-14 75.5
Msa1236860 MtrunA17_Chr1g0197551 26.848 257 149 11 713 950 29 265 4.51e-12 70.5
Msa1236860 MtrunA17_Chr7g0253861 22.593 270 185 9 639 903 51 301 4.98e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236860 AT2G46340.1 60.393 611 216 6 361 963 437 1029 0.0 717
Msa1236860 AT2G46340.2 60.393 611 216 6 361 963 437 1029 0.0 717
Msa1236860 AT4G11110.1 46.795 780 373 12 187 963 296 1036 0.0 676
Msa1236860 AT3G15354.3 38.285 828 396 18 192 963 76 844 0.0 548
Msa1236860 AT1G53090.3 38.124 821 391 16 180 963 54 794 1.44e-177 536
Msa1236860 AT1G53090.1 38.124 821 391 16 180 963 54 794 1.44e-177 536
Msa1236860 AT1G53090.2 38.124 821 391 16 180 963 54 794 1.44e-177 536
Msa1236860 AT3G15354.1 37.681 828 393 18 192 963 76 836 2.69e-175 531
Msa1236860 AT3G15354.4 42.693 609 282 13 407 963 1 594 1.06e-156 474
Msa1236860 AT3G15354.5 42.693 609 282 13 407 963 1 594 1.06e-156 474
Msa1236860 AT1G53090.4 43.098 594 280 11 407 963 1 573 6.70e-155 469
Msa1236860 AT3G15354.2 32.862 636 322 15 192 771 76 662 1.31e-103 338
Msa1236860 AT2G32950.2 38.546 454 241 7 509 962 145 560 1.16e-100 327
Msa1236860 AT1G53090.5 32.803 628 315 11 180 770 54 611 5.42e-100 327
Msa1236860 AT2G32950.1 38.462 455 242 7 509 963 258 674 3.10e-99 326
Msa1236860 AT5G23730.1 35.380 342 174 15 644 959 41 361 1.52e-44 166
Msa1236860 AT5G52250.1 32.229 332 193 10 641 960 69 380 1.18e-42 160
Msa1236860 AT2G21390.1 27.692 260 143 12 713 950 29 265 5.44e-13 73.9
Msa1236860 AT1G62020.1 27.027 259 146 11 713 950 29 265 1.22e-12 72.8
Msa1236860 AT2G43770.1 25.161 310 196 14 639 932 48 337 7.15e-11 65.5

Find 172 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTGTGACTTAACCTTTA+AGG 0.103884 8_2:+16079754 Msa1236860:CDS
GCTTCTTTGCACTAAAATTT+TGG 0.138486 8_2:-16077284 None:intergenic
TCCATTACTATGACCCTTAA+AGG 0.147618 8_2:-16079768 None:intergenic
GTATATATTTAAACAGATTT+TGG 0.151402 8_2:+16077038 Msa1236860:CDS
TTCTGAATTCAAGTATTTAT+TGG 0.172653 8_2:+16075971 Msa1236860:five_prime_UTR
GAGTCAGTCGATCCCATTTC+TGG 0.205018 8_2:+16080370 Msa1236860:CDS
TTTCGTTGGTTTATCTGTTT+TGG 0.225023 8_2:+16079878 Msa1236860:CDS
GTTTCCTCATTGAGAACTTC+TGG 0.247523 8_2:-16077510 None:intergenic
CTCAGACCAGTGATTTATTC+AGG 0.251637 8_2:+16080532 Msa1236860:three_prime_UTR
AATGACGAATAAAGCTTAAA+TGG 0.277827 8_2:+16080566 Msa1236860:three_prime_UTR
CTAGATTATGCACACCTATT+AGG 0.295650 8_2:+16076476 Msa1236860:CDS
TGAATTTATACGCGAATTAG+AGG 0.317112 8_2:+16078210 Msa1236860:CDS
ATAGAACCTTGAATTCTCTT+TGG 0.319753 8_2:-16078664 None:intergenic
GCTTGTGACTTAACCTTTAA+GGG 0.321542 8_2:+16079755 Msa1236860:CDS
CAGCTTCCTTGAGCGGGCCT+TGG 0.322871 8_2:-16078564 None:intergenic
TACATTTGCAGGGCTCATTA+TGG 0.325837 8_2:-16079492 None:intergenic
AAGAACTTGAATGTAGCTTT+AGG 0.326233 8_2:+16076628 Msa1236860:CDS
ACTATTTGAATGACCAGAAA+TGG 0.327746 8_2:-16080383 None:intergenic
AAGAGAATTCAAGGTTCTAT+TGG 0.336597 8_2:+16078667 Msa1236860:CDS
CATAATGCTTTACCTGGTAT+TGG 0.338301 8_2:-16078039 None:intergenic
GAACAGACCAAGCTCTCTTT+TGG 0.339611 8_2:-16079189 None:intergenic
TTATTCCTAACAATGTGTTT+AGG 0.343156 8_2:-16076604 None:intergenic
CATCACTTCAACTGTATTCA+TGG 0.343911 8_2:+16077345 Msa1236860:CDS
TGAACACAGCATACATTTGC+AGG 0.344827 8_2:-16079503 None:intergenic
GAATTAGAGGCATCAAATTC+TGG 0.345543 8_2:+16078223 Msa1236860:CDS
AACCAGAGAGTTATTGCTAT+TGG 0.351564 8_2:-16076042 None:intergenic
TGATTATGATGGTGTGGTTC+AGG 0.361466 8_2:+16078993 Msa1236860:CDS
CGTATTTAAGTCATGCCTTA+AGG 0.365621 8_2:+16077203 Msa1236860:CDS
TCAACAAATGTTTATAGCCT+TGG 0.369678 8_2:+16077543 Msa1236860:CDS
TTTGCTTCCTTAGCTGGATC+TGG 0.370766 8_2:+16076547 Msa1236860:CDS
ATAATGCTTTACCTGGTATT+GGG 0.391610 8_2:-16078038 None:intergenic
ATATATGTGATGTATCAAAT+AGG 0.395112 8_2:+16080899 Msa1236860:three_prime_UTR
TCTAGTTATCCTCAAGTGTT+AGG 0.396169 8_2:+16076886 Msa1236860:CDS
CTAATAGGTGTGCATAATCT+AGG 0.402336 8_2:-16076475 None:intergenic
AATTTGTTTCTAGTGTCTGC+TGG 0.402719 8_2:+16080422 Msa1236860:CDS
CAAGGTTCTATTGGTTGTCT+AGG 0.404862 8_2:+16078676 Msa1236860:CDS
ATGATTGTTCTGTCAAACTA+TGG 0.406776 8_2:+16079254 Msa1236860:CDS
CAGATCCTAAACACATTGTT+AGG 0.406890 8_2:+16076599 Msa1236860:CDS
ATTTAGAGAATGTTGGTAAT+GGG 0.407051 8_2:+16078641 Msa1236860:CDS
TAGATTAAGCAAAGGACAAA+AGG 0.409406 8_2:+16076750 Msa1236860:CDS
TTCTGCATTGCAGTAATGAA+TGG 0.412673 8_2:-16080854 None:intergenic
CTGATAACTCTTTGAAGCTA+TGG 0.412942 8_2:+16079693 Msa1236860:CDS
AAAGAAAGGTTGTGCCTAGA+TGG 0.413225 8_2:+16077405 Msa1236860:CDS
AAAAGGGAATTGACTCTAGA+AGG 0.413733 8_2:+16076767 Msa1236860:CDS
TGAAGCACGTACATATATAT+AGG 0.415948 8_2:+16080753 Msa1236860:three_prime_UTR
TTGGGACGAGAAGACGGTTC+AGG 0.435479 8_2:-16078020 None:intergenic
AATCTAGGTGACCTTGGAAA+AGG 0.435987 8_2:-16076460 None:intergenic
TGCTTCATACATCTCTTGTT+CGG 0.436455 8_2:-16080737 None:intergenic
ATTGAAGGAACTGCATGAAT+TGG 0.438287 8_2:+16076370 Msa1236860:intron
CAGATGTGGGATGCAGGCTC+TGG 0.438938 8_2:+16079139 Msa1236860:intron
ACCTTTAAGGGTCATAGTAA+TGG 0.442210 8_2:+16079767 Msa1236860:CDS
TGGGTTCAGATGTGGGATGC+AGG 0.445620 8_2:+16079133 Msa1236860:intron
TGCAGGTCATGATGGCCTTA+AGG 0.446031 8_2:-16077218 None:intergenic
TTGCATATACCTTCATAGAA+AGG 0.456350 8_2:-16078700 None:intergenic
TGAAGAGACAGCATCTCTTA+AGG 0.463340 8_2:+16077317 Msa1236860:CDS
GAGGAACTGAAGAGCATAAG+AGG 0.464134 8_2:+16076425 Msa1236860:CDS
TTTGCTTCAACAAATGAACT+TGG 0.464342 8_2:-16078490 None:intergenic
TTCATCGCGGTCAAAACTTA+AGG 0.464544 8_2:-16078803 None:intergenic
CTCCAATAGCAATAACTCTC+TGG 0.468856 8_2:+16076040 Msa1236860:five_prime_UTR
TTGTTTGACATCTCGACGAC+GGG 0.470055 8_2:-16078913 None:intergenic
CAAATCTCTGCCAGTGCCAA+TGG 0.470603 8_2:+16080333 Msa1236860:CDS
ATTCTTCATAATGTGATGTC+TGG 0.471326 8_2:+16076934 Msa1236860:CDS
CATTTAGAGAATGTTGGTAA+TGG 0.473306 8_2:+16078640 Msa1236860:CDS
TAAGACATGACTGCAAATAG+TGG 0.475104 8_2:+16076400 Msa1236860:exon
TGTCTAGGACCTTTCTATGA+AGG 0.475887 8_2:+16078691 Msa1236860:CDS
GCTGATAACTCGAACCATCT+AGG 0.477223 8_2:-16077419 None:intergenic
ATTAGGAAGGAAAATGTGAT+TGG 0.478880 8_2:+16076493 Msa1236860:CDS
GCTGTGCAATATTGAGTCAT+TGG 0.479826 8_2:+16077893 Msa1236860:CDS
TTTCTTCTCCAGAATTTCGT+TGG 0.480988 8_2:+16079864 Msa1236860:intron
CGGCTGCAGCTTCCTTGAGC+GGG 0.481237 8_2:-16078570 None:intergenic
CTATTTGAATGACCAGAAAT+GGG 0.481751 8_2:-16080382 None:intergenic
TTACTGGAAGAATCATGATA+AGG 0.482054 8_2:-16078448 None:intergenic
TTGTGAGAAGCCATTGGCAC+TGG 0.482764 8_2:-16080343 None:intergenic
GAGAAAACAGTGAAGGGAAA+GGG 0.487106 8_2:+16076910 Msa1236860:CDS
GCGGCTGCAGCTTCCTTGAG+CGG 0.488025 8_2:-16078571 None:intergenic
TGTTCCATTGCAGGTCATGA+TGG 0.492104 8_2:-16077226 None:intergenic
TAAATGAGGCAATCTCCATC+TGG 0.493793 8_2:-16078623 None:intergenic
CGTCTTCTCGTCCCAATACC+AGG 0.496888 8_2:+16078027 Msa1236860:CDS
AGAGAAAACAGTGAAGGGAA+AGG 0.500835 8_2:+16076909 Msa1236860:CDS
ATGGAACAACGAAAATGCCT+TGG 0.500925 8_2:+16077241 Msa1236860:CDS
CTTGTTGCAGCCAACTCAGT+TGG 0.503279 8_2:+16080463 Msa1236860:CDS
TCTGCATTGCAGTAATGAAT+GGG 0.506544 8_2:-16080853 None:intergenic
AATGGGCCAAAGAGAATTCA+AGG 0.506547 8_2:+16078658 Msa1236860:CDS
CAAAGCTCAGTTGTGTGTGC+TGG 0.508113 8_2:+16078938 Msa1236860:CDS
TTGAATAAGATTAAATACAT+TGG 0.512553 8_2:+16077135 Msa1236860:CDS
TTGTTTGAACGAAGATATCA+AGG 0.514100 8_2:+16078366 Msa1236860:CDS
ATCTAGGTGACCTTGGAAAA+GGG 0.515860 8_2:-16076459 None:intergenic
TCACAAAATGCAAAGGAAGC+TGG 0.517461 8_2:+16077975 Msa1236860:CDS
TGATAACTCTTTGAAGCTAT+GGG 0.517563 8_2:+16079694 Msa1236860:CDS
AATCAAGTGTTAATAAAGAA+AGG 0.518495 8_2:+16077391 Msa1236860:CDS
GTAGAAAGAAATCATTCGTA+TGG 0.520653 8_2:+16078391 Msa1236860:CDS
TAAGGTAGATAGTTCAATTG+TGG 0.521276 8_2:-16078430 None:intergenic
ATGTATTTAATCTTATTCAA+AGG 0.522517 8_2:-16077132 None:intergenic
TTCGTAACACTAAAATCCCT+TGG 0.524049 8_2:+16079594 Msa1236860:CDS
TTGCCTCATTTAGAGAATGT+TGG 0.524574 8_2:+16078634 Msa1236860:CDS
CGGAACACCAAAAGAGAGCT+TGG 0.525737 8_2:+16079182 Msa1236860:CDS
TTTGGTCATCAAACACATGT+TGG 0.526232 8_2:-16077167 None:intergenic
TTACCAACATTCTCTAAATG+AGG 0.528415 8_2:-16078637 None:intergenic
TCGAATTTGTGAGAAGCCAT+TGG 0.529274 8_2:-16080349 None:intergenic
TGGAACAACGAAAATGCCTT+GGG 0.531237 8_2:+16077242 Msa1236860:CDS
AAGCTTAAATGGAGAGGAGA+GGG 0.533838 8_2:+16080577 Msa1236860:three_prime_UTR
CTCGTTAGATTCTGAACCAC+AGG 0.533992 8_2:-16079913 None:intergenic
ATCCCTTGGTGTACATTACC+TGG 0.537374 8_2:+16079608 Msa1236860:CDS
TTTCACAATTCCAACTGAGT+TGG 0.539152 8_2:-16080473 None:intergenic
CAATTCAGTTTGAAGAGAAG+TGG 0.541430 8_2:+16077478 Msa1236860:CDS
TTGAAGCCTGAATAAATCAC+TGG 0.541978 8_2:-16080538 None:intergenic
CTTAAGGCATGACTTAAATA+CGG 0.542841 8_2:-16077202 None:intergenic
TACTTCTCCATGAGATTCCA+AGG 0.543464 8_2:+16078547 Msa1236860:CDS
GAGTTTAAATTGTTTCAAAG+AGG 0.544146 8_2:+16080604 Msa1236860:three_prime_UTR
AGATTAAGCAAAGGACAAAA+GGG 0.544395 8_2:+16076751 Msa1236860:CDS
TTAGGAGAGAAAACAGTGAA+GGG 0.548507 8_2:+16076904 Msa1236860:CDS
AAGGCCATCATGACCTGCAA+TGG 0.548595 8_2:+16077222 Msa1236860:CDS
ACACTCTCAAGGATTTGTCT+TGG 0.549387 8_2:+16077077 Msa1236860:CDS
GAGCGGGCCTTGGAATCTCA+TGG 0.550025 8_2:-16078554 None:intergenic
GATGAAGACTACATTGCAGC+AGG 0.558236 8_2:+16078820 Msa1236860:CDS
GTTAGGAGAGAAAACAGTGA+AGG 0.558766 8_2:+16076903 Msa1236860:CDS
GTGCATAATCTAGGTGACCT+TGG 0.558844 8_2:-16076466 None:intergenic
TGATGCTGCCTAAAATTATG+TGG 0.562310 8_2:-16076658 None:intergenic
AAGCAGTGATAAAAGTGTGA+TGG 0.568908 8_2:+16078597 Msa1236860:CDS
AGAACAATCATCACTTCCAC+TGG 0.572949 8_2:-16079242 None:intergenic
CTGGCATCTACTGATTATGA+TGG 0.573907 8_2:+16078982 Msa1236860:CDS
TAAGGGTCATAGTAATGGAA+AGG 0.576196 8_2:+16079772 Msa1236860:CDS
GAGATTCCAAGGCCCGCTCA+AGG 0.576812 8_2:+16078558 Msa1236860:CDS
AAAGTGTGATGGAAACCAGA+TGG 0.581140 8_2:+16078608 Msa1236860:CDS
AACAATGTGTTTAGGATCTG+TGG 0.583202 8_2:-16076596 None:intergenic
TGGTGTACATTACCTGGTCA+TGG 0.585385 8_2:+16079614 Msa1236860:CDS
CTGGTATTGGGACGAGAAGA+CGG 0.587976 8_2:-16078026 None:intergenic
CTCTTTAAAATATCATCAAG+TGG 0.588090 8_2:+16080816 Msa1236860:three_prime_UTR
CGAATAAAGCTTAAATGGAG+AGG 0.589646 8_2:+16080571 Msa1236860:three_prime_UTR
ATCTACTGATTATGATGGTG+TGG 0.590834 8_2:+16078987 Msa1236860:CDS
AGGAGGTCCAGATCCAGCTA+AGG 0.590988 8_2:-16076554 None:intergenic
TCGGCTGATTACAAAGTGTA+CGG 0.592155 8_2:+16079563 Msa1236860:CDS
ATGACTGCAAATAGTGGGAG+AGG 0.592738 8_2:+16076406 Msa1236860:CDS
CATAATCAGTAGATGCCAGA+TGG 0.607853 8_2:-16078978 None:intergenic
AAGACATGACTGCAAATAGT+GGG 0.609137 8_2:+16076401 Msa1236860:exon
GGCGATAAGACGAAACAAGA+CGG 0.609452 8_2:-16077111 None:intergenic
CTAACAGCTTTACCATGACC+AGG 0.613394 8_2:-16079626 None:intergenic
TTGGATGGATACATTGCCTG+TGG 0.613457 8_2:+16079897 Msa1236860:CDS
GAGAGTTATTGCTATTGGAG+AGG 0.615651 8_2:-16076037 None:intergenic
TTGTCCAGAAGTTCTCAATG+AGG 0.618660 8_2:+16077506 Msa1236860:CDS
GCACAGGTATACTGTTCCCA+AGG 0.619352 8_2:-16077258 None:intergenic
AAAGCTTAAATGGAGAGGAG+AGG 0.619636 8_2:+16080576 Msa1236860:three_prime_UTR
ATTATGCACACCTATTAGGA+AGG 0.620818 8_2:+16076480 Msa1236860:CDS
ATTTCTATCACAAAATGCAA+AGG 0.621491 8_2:+16077968 Msa1236860:CDS
AATTGTGAAACTACTTCAGA+TGG 0.626139 8_2:+16080486 Msa1236860:CDS
ATAAAGTGAAGAAATCAGAA+AGG 0.626505 8_2:+16077013 Msa1236860:CDS
TTTGTTTGACATCTCGACGA+CGG 0.632482 8_2:-16078914 None:intergenic
GAAGACTACATTGCAGCAGG+TGG 0.632505 8_2:+16078823 Msa1236860:CDS
TGCTGCCTAAAATTATGTGG+AGG 0.638027 8_2:-16076655 None:intergenic
TCATAATGTGATGTCTGGCG+TGG 0.648364 8_2:+16076939 Msa1236860:CDS
TTGTTTCTAGTGTCTGCTGG+AGG 0.648602 8_2:+16080425 Msa1236860:CDS
TACAGCAAGTTCGAAGAGCG+CGG 0.652487 8_2:+16078733 Msa1236860:CDS
GCTGCCTAAAATTATGTGGA+GGG 0.654944 8_2:-16076654 None:intergenic
ACTTAAGGCACATATCACAT+TGG 0.655318 8_2:-16078788 None:intergenic
AATCACTTGAAATAGCATTG+AGG 0.657781 8_2:-16078873 None:intergenic
ATGGACTCAACTTAAGAGCG+TGG 0.658372 8_2:+16076974 Msa1236860:CDS
TCAAATAGTAGTGATAACAA+TGG 0.662592 8_2:+16080397 Msa1236860:CDS
GAACACAGCATACATTTGCA+GGG 0.663936 8_2:-16079502 None:intergenic
TAGCTTCAAAGAGTTATCAG+TGG 0.667175 8_2:-16079690 None:intergenic
AAATCACTTAGATTAAGCAA+AGG 0.669333 8_2:+16076742 Msa1236860:CDS
TCAGCCACTGTCTCAATACA+CGG 0.670117 8_2:+16079162 Msa1236860:CDS
GACCAGGTAATGTACACCAA+GGG 0.678899 8_2:-16079610 None:intergenic
TGACCAGGTAATGTACACCA+AGG 0.691760 8_2:-16079611 None:intergenic
AATGTGTTTAGGATCTGTGG+TGG 0.700851 8_2:-16076593 None:intergenic
AGATGATGTAGCTGACACAC+AGG 0.702078 8_2:+16078270 Msa1236860:CDS
TGTTTGACATCTCGACGACG+GGG 0.706101 8_2:-16078912 None:intergenic
CTGTGGTTCAGAATCTAACG+AGG 0.708727 8_2:+16079914 Msa1236860:CDS
ACAAGCATCAGATAACAACT+CGG 0.717159 8_2:-16079738 None:intergenic
TGTTCCGTGTATTGAGACAG+TGG 0.720730 8_2:-16079166 None:intergenic
CTGCAATGTAGTCTTCATCG+CGG 0.756043 8_2:-16078816 None:intergenic
TTTGAACGAAGATATCAAGG+AGG 0.768052 8_2:+16078369 Msa1236860:CDS
CAAACTATGGAATATCAGCG+AGG 0.779696 8_2:+16079267 Msa1236860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATATATTTAAACAGATTT+TGG + chr8_2:16077038-16077057 Msa1236860:CDS 15.0%
!! ATGTATTTAATCTTATTCAA+AGG - chr8_2:16077135-16077154 None:intergenic 15.0%
!! TTGAATAAGATTAAATACAT+TGG + chr8_2:16077135-16077154 Msa1236860:CDS 15.0%
!! ATAGGTTATGAATAATTATA+GGG - chr8_2:16077839-16077858 None:intergenic 15.0%
!! AATAGGTTATGAATAATTAT+AGG - chr8_2:16077840-16077859 None:intergenic 15.0%
!!! TATCTTTTTTTATGTATAAC+AGG + chr8_2:16078173-16078192 Msa1236860:intron 15.0%
!!! AAATCTTTTATTTTTTGGAT+CGG + chr8_2:16079544-16079563 Msa1236860:CDS 15.0%
!! TTCTGAATTCAAGTATTTAT+TGG + chr8_2:16075971-16075990 Msa1236860:five_prime_UTR 20.0%
!! AGGATAAAATAAAGAACATA+TGG - chr8_2:16076071-16076090 None:intergenic 20.0%
!! AGATATCAGAAAATTTAGAA+AGG - chr8_2:16076091-16076110 None:intergenic 20.0%
!! TGAATAGCATAAGATAAATT+TGG - chr8_2:16076186-16076205 None:intergenic 20.0%
!! ATTGATCTAAATTTGATTGA+AGG + chr8_2:16076355-16076374 Msa1236860:intron 20.0%
!!! TATAAAGCTTTTGCTAATAT+AGG + chr8_2:16076808-16076827 Msa1236860:CDS 20.0%
!!! ATTTAAACAGATTTTGGAAT+TGG + chr8_2:16077044-16077063 Msa1236860:CDS 20.0%
!! AATCAAGTGTTAATAAAGAA+AGG + chr8_2:16077391-16077410 Msa1236860:CDS 20.0%
!! TGAAACTTAACAAAATATCT+TGG - chr8_2:16077654-16077673 None:intergenic 20.0%
!! TCACTAATTAAAATAACCAT+AGG + chr8_2:16077671-16077690 Msa1236860:intron 20.0%
!! CACTAATTAAAATAACCATA+GGG + chr8_2:16077672-16077691 Msa1236860:intron 20.0%
!! CACTAAAATGTTAACAAAAT+AGG - chr8_2:16077857-16077876 None:intergenic 20.0%
!!! CTATTTTGTTAACATTTTAG+TGG + chr8_2:16077855-16077874 Msa1236860:intron 20.0%
!!! TCTGAATGTATGATTTTTAA+TGG + chr8_2:16078090-16078109 Msa1236860:intron 20.0%
!!! AGATCTACTAATAATTTTAC+TGG - chr8_2:16078467-16078486 None:intergenic 20.0%
!! CATTAATGTTAATGAAAACT+TGG - chr8_2:16079099-16079118 None:intergenic 20.0%
!!! TCCACAAATCTTTTATTTTT+TGG + chr8_2:16079539-16079558 Msa1236860:CDS 20.0%
!! TCCAAAAAATAAAAGATTTG+TGG - chr8_2:16079543-16079562 None:intergenic 20.0%
!! TTATGAGAAACTAATTTCTT+CGG - chr8_2:16080056-16080075 None:intergenic 20.0%
!!! TTAGTTTCTCATAATTTTTG+TGG + chr8_2:16080062-16080081 Msa1236860:intron 20.0%
!!! TTTTTCTTTTTATCACTCTA+TGG + chr8_2:16080089-16080108 Msa1236860:intron 20.0%
!! ATTATAAGCTCTTGTATTAT+TGG + chr8_2:16080192-16080211 Msa1236860:intron 20.0%
!!! GCATATTTTGTTCATATTTT+AGG - chr8_2:16080718-16080737 None:intergenic 20.0%
!! ATATATGTGATGTATCAAAT+AGG + chr8_2:16080899-16080918 Msa1236860:three_prime_UTR 20.0%
! TTATTCCTAACAATGTGTTT+AGG - chr8_2:16076607-16076626 None:intergenic 25.0%
! AAATCACTTAGATTAAGCAA+AGG + chr8_2:16076742-16076761 Msa1236860:CDS 25.0%
!! TTTTGCTAATATAGGCAATA+TGG + chr8_2:16076816-16076835 Msa1236860:CDS 25.0%
! ATAAAGTGAAGAAATCAGAA+AGG + chr8_2:16077013-16077032 Msa1236860:CDS 25.0%
! GCAAAATTTAATCAAACCTT+AGG + chr8_2:16077702-16077721 Msa1236860:intron 25.0%
! TGTATCAATTTCATTTCCTA+AGG - chr8_2:16077721-16077740 None:intergenic 25.0%
!! TTTTGTGATAGAAATTTTGG+CGG - chr8_2:16077963-16077982 None:intergenic 25.0%
!! GCATTTTGTGATAGAAATTT+TGG - chr8_2:16077966-16077985 None:intergenic 25.0%
! ATTTCTATCACAAAATGCAA+AGG + chr8_2:16077968-16077987 Msa1236860:CDS 25.0%
! TGAAGAAGAAAAGAAAAAAC+AGG + chr8_2:16078318-16078337 Msa1236860:CDS 25.0%
!!! ATTTAGAGAATGTTGGTAAT+GGG + chr8_2:16078641-16078660 Msa1236860:CDS 25.0%
! CAGTTATATAAAAAACCATC+TGG + chr8_2:16078963-16078982 Msa1236860:CDS 25.0%
! TTACAAAGCATAACTTACAA+TGG + chr8_2:16079314-16079333 Msa1236860:intron 25.0%
! AAGAAATATAACTATGTGAC+AGG + chr8_2:16079375-16079394 Msa1236860:intron 25.0%
!! TTTTTGCAGAGAAATTCTAT+AGG + chr8_2:16079467-16079486 Msa1236860:intron 25.0%
!! ATATAATACATTAGTCTGTC+TGG + chr8_2:16079966-16079985 Msa1236860:intron 25.0%
! TCAAATAGTAGTGATAACAA+TGG + chr8_2:16080397-16080416 Msa1236860:CDS 25.0%
!! TGTGACATATGCATTTTATT+TGG + chr8_2:16080509-16080528 Msa1236860:exon 25.0%
! AATGACGAATAAAGCTTAAA+TGG + chr8_2:16080566-16080585 Msa1236860:three_prime_UTR 25.0%
! GAGTTTAAATTGTTTCAAAG+AGG + chr8_2:16080604-16080623 Msa1236860:three_prime_UTR 25.0%
!!! TCTCTTTAGTTTTCATAGAT+AGG + chr8_2:16080639-16080658 Msa1236860:three_prime_UTR 25.0%
!!! CTCTTTAAAATATCATCAAG+TGG + chr8_2:16080816-16080835 Msa1236860:three_prime_UTR 25.0%
CAATGAACAAAGTAACTCTT+TGG - chr8_2:16076142-16076161 None:intergenic 30.0%
! CAAAGAGTTACTTTGTTCAT+TGG + chr8_2:16076140-16076159 Msa1236860:intron 30.0%
ATGTTCATGCAATCATTTGA+AGG + chr8_2:16076255-16076274 Msa1236860:intron 30.0%
! ATCACATTTTCCTTCCTAAT+AGG - chr8_2:16076493-16076512 None:intergenic 30.0%
ATTAGGAAGGAAAATGTGAT+TGG + chr8_2:16076493-16076512 Msa1236860:CDS 30.0%
AAGAACTTGAATGTAGCTTT+AGG + chr8_2:16076628-16076647 Msa1236860:CDS 30.0%
TAGATTAAGCAAAGGACAAA+AGG + chr8_2:16076750-16076769 Msa1236860:CDS 30.0%
AGATTAAGCAAAGGACAAAA+GGG + chr8_2:16076751-16076770 Msa1236860:CDS 30.0%
ATTCTTCATAATGTGATGTC+TGG + chr8_2:16076934-16076953 Msa1236860:CDS 30.0%
! ATACGGTGAAACATGATTTT+TGG - chr8_2:16077188-16077207 None:intergenic 30.0%
CTTAAGGCATGACTTAAATA+CGG - chr8_2:16077205-16077224 None:intergenic 30.0%
! GCTTCTTTGCACTAAAATTT+TGG - chr8_2:16077287-16077306 None:intergenic 30.0%
TCAACAAATGTTTATAGCCT+TGG + chr8_2:16077543-16077562 Msa1236860:CDS 30.0%
AAAATATCTTGGCTATCAAG+AGG - chr8_2:16077643-16077662 None:intergenic 30.0%
GCATAATTAATCCAAGAAGT+TGG - chr8_2:16077771-16077790 None:intergenic 30.0%
ATAATGCTTTACCTGGTATT+GGG - chr8_2:16078041-16078060 None:intergenic 30.0%
AATATTGCCATTGATGTTTG+AGG + chr8_2:16078120-16078139 Msa1236860:intron 30.0%
TGAATTTATACGCGAATTAG+AGG + chr8_2:16078210-16078229 Msa1236860:CDS 30.0%
GAAAAAACAGGAAGCTAAAT+TGG + chr8_2:16078330-16078349 Msa1236860:CDS 30.0%
TTGTTTGAACGAAGATATCA+AGG + chr8_2:16078366-16078385 Msa1236860:CDS 30.0%
GTAGAAAGAAATCATTCGTA+TGG + chr8_2:16078391-16078410 Msa1236860:CDS 30.0%
TAAGGTAGATAGTTCAATTG+TGG - chr8_2:16078433-16078452 None:intergenic 30.0%
TTACTGGAAGAATCATGATA+AGG - chr8_2:16078451-16078470 None:intergenic 30.0%
TTTGCTTCAACAAATGAACT+TGG - chr8_2:16078493-16078512 None:intergenic 30.0%
TTACCAACATTCTCTAAATG+AGG - chr8_2:16078640-16078659 None:intergenic 30.0%
! CATTTAGAGAATGTTGGTAA+TGG + chr8_2:16078640-16078659 Msa1236860:CDS 30.0%
ATAGAACCTTGAATTCTCTT+TGG - chr8_2:16078667-16078686 None:intergenic 30.0%
AAGAGAATTCAAGGTTCTAT+TGG + chr8_2:16078667-16078686 Msa1236860:CDS 30.0%
TTGCATATACCTTCATAGAA+AGG - chr8_2:16078703-16078722 None:intergenic 30.0%
AATCACTTGAAATAGCATTG+AGG - chr8_2:16078876-16078895 None:intergenic 30.0%
AACATTAATGTTACGTGACA+TGG + chr8_2:16079109-16079128 Msa1236860:intron 30.0%
ATGATTGTTCTGTCAAACTA+TGG + chr8_2:16079254-16079273 Msa1236860:CDS 30.0%
!! TGATAACTCTTTGAAGCTAT+GGG + chr8_2:16079694-16079713 Msa1236860:CDS 30.0%
!!! TTTCGTTGGTTTATCTGTTT+TGG + chr8_2:16079878-16079897 Msa1236860:CDS 30.0%
!!! CTCTATTTTTTCTACCTTTC+AGG + chr8_2:16080297-16080316 Msa1236860:intron 30.0%
CTATTTGAATGACCAGAAAT+GGG - chr8_2:16080385-16080404 None:intergenic 30.0%
ACTATTTGAATGACCAGAAA+TGG - chr8_2:16080386-16080405 None:intergenic 30.0%
AATTGTGAAACTACTTCAGA+TGG + chr8_2:16080486-16080505 Msa1236860:CDS 30.0%
TGAAGCACGTACATATATAT+AGG + chr8_2:16080753-16080772 Msa1236860:three_prime_UTR 30.0%
! AGGCTTTTGAATTTAATCAC+AGG + chr8_2:16080773-16080792 Msa1236860:three_prime_UTR 30.0%
AACCAGAGAGTTATTGCTAT+TGG - chr8_2:16076045-16076064 None:intergenic 35.0%
ATTGAAGGAACTGCATGAAT+TGG + chr8_2:16076370-16076389 Msa1236860:intron 35.0%
TAAGACATGACTGCAAATAG+TGG + chr8_2:16076400-16076419 Msa1236860:exon 35.0%
AAGACATGACTGCAAATAGT+GGG + chr8_2:16076401-16076420 Msa1236860:exon 35.0%
! AAATCAATGACCCTTTTCCA+AGG + chr8_2:16076449-16076468 Msa1236860:CDS 35.0%
CTAATAGGTGTGCATAATCT+AGG - chr8_2:16076478-16076497 None:intergenic 35.0%
CTAGATTATGCACACCTATT+AGG + chr8_2:16076476-16076495 Msa1236860:CDS 35.0%
ATTATGCACACCTATTAGGA+AGG + chr8_2:16076480-16076499 Msa1236860:CDS 35.0%
! AGAAATTTTGCTTCCTTAGC+TGG + chr8_2:16076541-16076560 Msa1236860:CDS 35.0%
GAACAAAAACTAGTACTAGG+AGG - chr8_2:16076574-16076593 None:intergenic 35.0%
GTGGAACAAAAACTAGTACT+AGG - chr8_2:16076577-16076596 None:intergenic 35.0%
! AACAATGTGTTTAGGATCTG+TGG - chr8_2:16076599-16076618 None:intergenic 35.0%
CAGATCCTAAACACATTGTT+AGG + chr8_2:16076599-16076618 Msa1236860:CDS 35.0%
! GTATCCCTCCACATAATTTT+AGG + chr8_2:16076650-16076669 Msa1236860:CDS 35.0%
TGATGCTGCCTAAAATTATG+TGG - chr8_2:16076661-16076680 None:intergenic 35.0%
! ATAATTTTAGGCAGCATCAG+AGG + chr8_2:16076662-16076681 Msa1236860:CDS 35.0%
! AAAAGGGAATTGACTCTAGA+AGG + chr8_2:16076767-16076786 Msa1236860:CDS 35.0%
TCTAGTTATCCTCAAGTGTT+AGG + chr8_2:16076886-16076905 Msa1236860:CDS 35.0%
TTAGGAGAGAAAACAGTGAA+GGG + chr8_2:16076904-16076923 Msa1236860:CDS 35.0%
TTTGGTCATCAAACACATGT+TGG - chr8_2:16077170-16077189 None:intergenic 35.0%
CGTATTTAAGTCATGCCTTA+AGG + chr8_2:16077203-16077222 Msa1236860:CDS 35.0%
!! ACTAAAATTTTGGCATGCAC+AGG - chr8_2:16077277-16077296 None:intergenic 35.0%
CATCACTTCAACTGTATTCA+TGG + chr8_2:16077345-16077364 Msa1236860:CDS 35.0%
CAATTCAGTTTGAAGAGAAG+TGG + chr8_2:16077478-16077497 Msa1236860:CDS 35.0%
GAGGAAATTATGCAGGATAA+AGG - chr8_2:16077624-16077643 None:intergenic 35.0%
CTATCAAGAGGAAATTATGC+AGG - chr8_2:16077631-16077650 None:intergenic 35.0%
! CAAGTTTTCTTCCAACTTCT+TGG + chr8_2:16077757-16077776 Msa1236860:intron 35.0%
CATAATGCTTTACCTGGTAT+TGG - chr8_2:16078042-16078061 None:intergenic 35.0%
GAATAGTCCTCAAACATCAA+TGG - chr8_2:16078130-16078149 None:intergenic 35.0%
!! GAATTAGAGGCATCAAATTC+TGG + chr8_2:16078223-16078242 Msa1236860:CDS 35.0%
TTTGAACGAAGATATCAAGG+AGG + chr8_2:16078369-16078388 Msa1236860:CDS 35.0%
!! ACTTTTATCACTGCTTTTGG+CGG - chr8_2:16078593-16078612 None:intergenic 35.0%
! CACACTTTTATCACTGCTTT+TGG - chr8_2:16078596-16078615 None:intergenic 35.0%
! AAGCAGTGATAAAAGTGTGA+TGG + chr8_2:16078597-16078616 Msa1236860:CDS 35.0%
TTGCCTCATTTAGAGAATGT+TGG + chr8_2:16078634-16078653 Msa1236860:CDS 35.0%
ACTTAAGGCACATATCACAT+TGG - chr8_2:16078791-16078810 None:intergenic 35.0%
! ATCTACTGATTATGATGGTG+TGG + chr8_2:16078987-16079006 Msa1236860:CDS 35.0%
TTAATGTTACGTGACATGGA+TGG + chr8_2:16079113-16079132 Msa1236860:intron 35.0%
TAATGTTACGTGACATGGAT+GGG + chr8_2:16079114-16079133 Msa1236860:intron 35.0%
! TTCCACTGGCAAACATTTTT+GGG - chr8_2:16079231-16079250 None:intergenic 35.0%
TTCGTAACACTAAAATCCCT+TGG + chr8_2:16079594-16079613 Msa1236860:CDS 35.0%
TAGCTTCAAAGAGTTATCAG+TGG - chr8_2:16079693-16079712 None:intergenic 35.0%
!! CTGATAACTCTTTGAAGCTA+TGG + chr8_2:16079693-16079712 Msa1236860:CDS 35.0%
ACAAGCATCAGATAACAACT+CGG - chr8_2:16079741-16079760 None:intergenic 35.0%
TGCTTGTGACTTAACCTTTA+AGG + chr8_2:16079754-16079773 Msa1236860:CDS 35.0%
GCTTGTGACTTAACCTTTAA+GGG + chr8_2:16079755-16079774 Msa1236860:CDS 35.0%
! ACCTTTAAGGGTCATAGTAA+TGG + chr8_2:16079767-16079786 Msa1236860:CDS 35.0%
TCCATTACTATGACCCTTAA+AGG - chr8_2:16079771-16079790 None:intergenic 35.0%
! TAAGGGTCATAGTAATGGAA+AGG + chr8_2:16079772-16079791 Msa1236860:CDS 35.0%
TTTCTTCTCCAGAATTTCGT+TGG + chr8_2:16079864-16079883 Msa1236860:intron 35.0%
CAGATAAACCAACGAAATTC+TGG - chr8_2:16079875-16079894 None:intergenic 35.0%
!! GTTGGTTTATCTGTTTTGGA+TGG + chr8_2:16079882-16079901 Msa1236860:CDS 35.0%
! TTATCACTCTATGGCGTTTT+AGG + chr8_2:16080098-16080117 Msa1236860:intron 35.0%
! ATGTGTATCTTTTGATCCCA+CGG - chr8_2:16080257-16080276 None:intergenic 35.0%
GTGATAACAGTAAACCTGAA+AGG - chr8_2:16080314-16080333 None:intergenic 35.0%
!! AATTTGTTTCTAGTGTCTGC+TGG + chr8_2:16080422-16080441 Msa1236860:CDS 35.0%
TTTCACAATTCCAACTGAGT+TGG - chr8_2:16080476-16080495 None:intergenic 35.0%
TTGAAGCCTGAATAAATCAC+TGG - chr8_2:16080541-16080560 None:intergenic 35.0%
CGAATAAAGCTTAAATGGAG+AGG + chr8_2:16080571-16080590 Msa1236860:three_prime_UTR 35.0%
TGCTTCATACATCTCTTGTT+CGG - chr8_2:16080740-16080759 None:intergenic 35.0%
TCTGCATTGCAGTAATGAAT+GGG - chr8_2:16080856-16080875 None:intergenic 35.0%
TTCTGCATTGCAGTAATGAA+TGG - chr8_2:16080857-16080876 None:intergenic 35.0%
! GAGAGTTATTGCTATTGGAG+AGG - chr8_2:16076040-16076059 None:intergenic 40.0%
CTCCAATAGCAATAACTCTC+TGG + chr8_2:16076040-16076059 Msa1236860:five_prime_UTR 40.0%
ATCTAGGTGACCTTGGAAAA+GGG - chr8_2:16076462-16076481 None:intergenic 40.0%
AATCTAGGTGACCTTGGAAA+AGG - chr8_2:16076463-16076482 None:intergenic 40.0%
! AATGTGTTTAGGATCTGTGG+TGG - chr8_2:16076596-16076615 None:intergenic 40.0%
GCTGCCTAAAATTATGTGGA+GGG - chr8_2:16076657-16076676 None:intergenic 40.0%
TGCTGCCTAAAATTATGTGG+AGG - chr8_2:16076658-16076677 None:intergenic 40.0%
! GTTTTCTCTCCTAACACTTG+AGG - chr8_2:16076898-16076917 None:intergenic 40.0%
GTTAGGAGAGAAAACAGTGA+AGG + chr8_2:16076903-16076922 Msa1236860:CDS 40.0%
AGAGAAAACAGTGAAGGGAA+AGG + chr8_2:16076909-16076928 Msa1236860:CDS 40.0%
GAGAAAACAGTGAAGGGAAA+GGG + chr8_2:16076910-16076929 Msa1236860:CDS 40.0%
!! GTTGATTTTGCACACTCTCA+AGG + chr8_2:16077066-16077085 Msa1236860:CDS 40.0%
ACACTCTCAAGGATTTGTCT+TGG + chr8_2:16077077-16077096 Msa1236860:CDS 40.0%
! CATTTTCGTTGTTCCATTGC+AGG - chr8_2:16077238-16077257 None:intergenic 40.0%
ATGGAACAACGAAAATGCCT+TGG + chr8_2:16077241-16077260 Msa1236860:CDS 40.0%
TGGAACAACGAAAATGCCTT+GGG + chr8_2:16077242-16077261 Msa1236860:CDS 40.0%
TGAAGAGACAGCATCTCTTA+AGG + chr8_2:16077317-16077336 Msa1236860:CDS 40.0%
TCATGGCTGTGACACAAAAA+TGG + chr8_2:16077362-16077381 Msa1236860:CDS 40.0%
CTGTGACACAAAAATGGACA+TGG + chr8_2:16077368-16077387 Msa1236860:CDS 40.0%
AAAGAAAGGTTGTGCCTAGA+TGG + chr8_2:16077405-16077424 Msa1236860:CDS 40.0%
TTGTCCAGAAGTTCTCAATG+AGG + chr8_2:16077506-16077525 Msa1236860:CDS 40.0%
GTTTCCTCATTGAGAACTTC+TGG - chr8_2:16077513-16077532 None:intergenic 40.0%
CCTCAAAAAGAAGAACTCCA+AGG - chr8_2:16077563-16077582 None:intergenic 40.0%
! CCTTGGAGTTCTTCTTTTTG+AGG + chr8_2:16077560-16077579 Msa1236860:CDS 40.0%
! AATTTTGCACAACAGCCCTA+TGG - chr8_2:16077690-16077709 None:intergenic 40.0%
GCTGTGCAATATTGAGTCAT+TGG + chr8_2:16077893-16077912 Msa1236860:CDS 40.0%
TCACAAAATGCAAAGGAAGC+TGG + chr8_2:16077975-16077994 Msa1236860:CDS 40.0%
!!! AGGAAGCTGGTTTTTGTCTA+TGG + chr8_2:16077988-16078007 Msa1236860:CDS 40.0%
TACTTCTCCATGAGATTCCA+AGG + chr8_2:16078547-16078566 Msa1236860:CDS 40.0%
! AAAGTGTGATGGAAACCAGA+TGG + chr8_2:16078608-16078627 Msa1236860:CDS 40.0%
TAAATGAGGCAATCTCCATC+TGG - chr8_2:16078626-16078645 None:intergenic 40.0%
AATGGGCCAAAGAGAATTCA+AGG + chr8_2:16078658-16078677 Msa1236860:CDS 40.0%
! CAAGGTTCTATTGGTTGTCT+AGG + chr8_2:16078676-16078695 Msa1236860:CDS 40.0%
! TGTCTAGGACCTTTCTATGA+AGG + chr8_2:16078691-16078710 Msa1236860:CDS 40.0%
TTCATCGCGGTCAAAACTTA+AGG - chr8_2:16078806-16078825 None:intergenic 40.0%
TTTGTTTGACATCTCGACGA+CGG - chr8_2:16078917-16078936 None:intergenic 40.0%
CATAATCAGTAGATGCCAGA+TGG - chr8_2:16078981-16079000 None:intergenic 40.0%
! CTGGCATCTACTGATTATGA+TGG + chr8_2:16078982-16079001 Msa1236860:CDS 40.0%
! TGATTATGATGGTGTGGTTC+AGG + chr8_2:16078993-16079012 Msa1236860:CDS 40.0%
!! AGCTTGGTCTGTTCACTTTT+CGG + chr8_2:16079198-16079217 Msa1236860:CDS 40.0%
!!! ACTGGCAAACATTTTTGGGT+CGG - chr8_2:16079227-16079246 None:intergenic 40.0%
! CTTCCACTGGCAAACATTTT+TGG - chr8_2:16079232-16079251 None:intergenic 40.0%
AGAACAATCATCACTTCCAC+TGG - chr8_2:16079245-16079264 None:intergenic 40.0%
CAAACTATGGAATATCAGCG+AGG + chr8_2:16079267-16079286 Msa1236860:CDS 40.0%
TACATTTGCAGGGCTCATTA+TGG - chr8_2:16079495-16079514 None:intergenic 40.0%
GAACACAGCATACATTTGCA+GGG - chr8_2:16079505-16079524 None:intergenic 40.0%
TGAACACAGCATACATTTGC+AGG - chr8_2:16079506-16079525 None:intergenic 40.0%
TCGGCTGATTACAAAGTGTA+CGG + chr8_2:16079563-16079582 Msa1236860:CDS 40.0%
! GGTCATAGTAATGGAAAGGT+TGG + chr8_2:16079776-16079795 Msa1236860:intron 40.0%
TTGAATTCGACATCAACCGT+GGG + chr8_2:16080238-16080257 Msa1236860:intron 40.0%
TCGAATTTGTGAGAAGCCAT+TGG - chr8_2:16080352-16080371 None:intergenic 40.0%
CTCAGACCAGTGATTTATTC+AGG + chr8_2:16080532-16080551 Msa1236860:three_prime_UTR 40.0%
AAAGCTTAAATGGAGAGGAG+AGG + chr8_2:16080576-16080595 Msa1236860:three_prime_UTR 40.0%
AAGCTTAAATGGAGAGGAGA+GGG + chr8_2:16080577-16080596 Msa1236860:three_prime_UTR 40.0%
! ATGACTGCAAATAGTGGGAG+AGG + chr8_2:16076406-16076425 Msa1236860:CDS 45.0%
! GAGGAACTGAAGAGCATAAG+AGG + chr8_2:16076425-16076444 Msa1236860:CDS 45.0%
GTGCATAATCTAGGTGACCT+TGG - chr8_2:16076469-16076488 None:intergenic 45.0%
TTTGCTTCCTTAGCTGGATC+TGG + chr8_2:16076547-16076566 Msa1236860:CDS 45.0%
TCATAATGTGATGTCTGGCG+TGG + chr8_2:16076939-16076958 Msa1236860:CDS 45.0%
!!! GGCGTGGAATGTTTTAACGA+TGG + chr8_2:16076955-16076974 Msa1236860:CDS 45.0%
ATGGACTCAACTTAAGAGCG+TGG + chr8_2:16076974-16076993 Msa1236860:CDS 45.0%
GGCGATAAGACGAAACAAGA+CGG - chr8_2:16077114-16077133 None:intergenic 45.0%
TGTTCCATTGCAGGTCATGA+TGG - chr8_2:16077229-16077248 None:intergenic 45.0%
GCTGATAACTCGAACCATCT+AGG - chr8_2:16077422-16077441 None:intergenic 45.0%
CAGCAGCATAATGCTTTACC+TGG - chr8_2:16078048-16078067 None:intergenic 45.0%
AGATGATGTAGCTGACACAC+AGG + chr8_2:16078270-16078289 Msa1236860:CDS 45.0%
CTGCAATGTAGTCTTCATCG+CGG - chr8_2:16078819-16078838 None:intergenic 45.0%
GATGAAGACTACATTGCAGC+AGG + chr8_2:16078820-16078839 Msa1236860:CDS 45.0%
TTGTTTGACATCTCGACGAC+GGG - chr8_2:16078916-16078935 None:intergenic 45.0%
! ACATGGATGGGTTCAGATGT+GGG + chr8_2:16079126-16079145 Msa1236860:intron 45.0%
TCAGCCACTGTCTCAATACA+CGG + chr8_2:16079162-16079181 Msa1236860:CDS 45.0%
TGTTCCGTGTATTGAGACAG+TGG - chr8_2:16079169-16079188 None:intergenic 45.0%
! GAACAGACCAAGCTCTCTTT+TGG - chr8_2:16079192-16079211 None:intergenic 45.0%
GACCCAAAAATGTTTGCCAG+TGG + chr8_2:16079226-16079245 Msa1236860:CDS 45.0%
! ATCCCTTGGTGTACATTACC+TGG + chr8_2:16079608-16079627 Msa1236860:CDS 45.0%
GACCAGGTAATGTACACCAA+GGG - chr8_2:16079613-16079632 None:intergenic 45.0%
TGACCAGGTAATGTACACCA+AGG - chr8_2:16079614-16079633 None:intergenic 45.0%
TGGTGTACATTACCTGGTCA+TGG + chr8_2:16079614-16079633 Msa1236860:CDS 45.0%
CTAACAGCTTTACCATGACC+AGG - chr8_2:16079629-16079648 None:intergenic 45.0%
TTGGATGGATACATTGCCTG+TGG + chr8_2:16079897-16079916 Msa1236860:CDS 45.0%
CTCGTTAGATTCTGAACCAC+AGG - chr8_2:16079916-16079935 None:intergenic 45.0%
CTGTGGTTCAGAATCTAACG+AGG + chr8_2:16079914-16079933 Msa1236860:CDS 45.0%
! CATTAGTCTGTCTGGATCTC+TGG + chr8_2:16079974-16079993 Msa1236860:intron 45.0%
GTTGAATTCGACATCAACCG+TGG + chr8_2:16080237-16080256 Msa1236860:intron 45.0%
!! TTGTTTCTAGTGTCTGCTGG+AGG + chr8_2:16080425-16080444 Msa1236860:CDS 45.0%
!!! ATTTATTTATTTATTTTAGT+TGG + chr8_2:16076281-16076300 Msa1236860:intron 5.0%
! TGCAGGTCATGATGGCCTTA+AGG - chr8_2:16077221-16077240 None:intergenic 50.0%
AAGGCCATCATGACCTGCAA+TGG + chr8_2:16077222-16077241 Msa1236860:CDS 50.0%
GCACAGGTATACTGTTCCCA+AGG - chr8_2:16077261-16077280 None:intergenic 50.0%
! CTGGTATTGGGACGAGAAGA+CGG - chr8_2:16078029-16078048 None:intergenic 50.0%
TACAGCAAGTTCGAAGAGCG+CGG + chr8_2:16078733-16078752 Msa1236860:CDS 50.0%
GAAGACTACATTGCAGCAGG+TGG + chr8_2:16078823-16078842 Msa1236860:CDS 50.0%
TGTTTGACATCTCGACGACG+GGG - chr8_2:16078915-16078934 None:intergenic 50.0%
CAAAGCTCAGTTGTGTGTGC+TGG + chr8_2:16078938-16078957 Msa1236860:CDS 50.0%
! GACATGGATGGGTTCAGATG+TGG + chr8_2:16079125-16079144 Msa1236860:intron 50.0%
CGGAACACCAAAAGAGAGCT+TGG + chr8_2:16079182-16079201 Msa1236860:CDS 50.0%
TGAGCTGATTGTGTCGTGAG+AGG + chr8_2:16079997-16080016 Msa1236860:intron 50.0%
TTCTTCGGCTAAATGCAGCG+CGG - chr8_2:16080041-16080060 None:intergenic 50.0%
CAAATCTCTGCCAGTGCCAA+TGG + chr8_2:16080333-16080352 Msa1236860:CDS 50.0%
TTGTGAGAAGCCATTGGCAC+TGG - chr8_2:16080346-16080365 None:intergenic 50.0%
GAGTCAGTCGATCCCATTTC+TGG + chr8_2:16080370-16080389 Msa1236860:CDS 50.0%
CTTGTTGCAGCCAACTCAGT+TGG + chr8_2:16080463-16080482 Msa1236860:CDS 50.0%
AGGAGGTCCAGATCCAGCTA+AGG - chr8_2:16076557-16076576 None:intergenic 55.0%
TTGGGACGAGAAGACGGTTC+AGG - chr8_2:16078023-16078042 None:intergenic 55.0%
CGTCTTCTCGTCCCAATACC+AGG + chr8_2:16078027-16078046 Msa1236860:CDS 55.0%
TGGGTTCAGATGTGGGATGC+AGG + chr8_2:16079133-16079152 Msa1236860:intron 55.0%
GAGCGGGCCTTGGAATCTCA+TGG - chr8_2:16078557-16078576 None:intergenic 60.0%
GAGATTCCAAGGCCCGCTCA+AGG + chr8_2:16078558-16078577 Msa1236860:CDS 60.0%
CAGATGTGGGATGCAGGCTC+TGG + chr8_2:16079139-16079158 Msa1236860:intron 60.0%
CAGCTTCCTTGAGCGGGCCT+TGG - chr8_2:16078567-16078586 None:intergenic 65.0%
CGGCTGCAGCTTCCTTGAGC+GGG - chr8_2:16078573-16078592 None:intergenic 65.0%
GCGGCTGCAGCTTCCTTGAG+CGG - chr8_2:16078574-16078593 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 16075961 16080927 16075961 ID=Msa1236860;Name=Msa1236860
chr8_2 mRNA 16075961 16080927 16075961 ID=Msa1236860-mRNA-1;Parent=Msa1236860;Name=Msa1236860-mRNA-1;_AED=0.08;_eAED=0.08;_QI=130|0.85|0.87|1|0.85|0.75|8|414|963
chr8_2 exon 16075961 16076061 16075961 ID=Msa1236860-mRNA-1:exon:5975;Parent=Msa1236860-mRNA-1
chr8_2 exon 16076377 16077581 16076377 ID=Msa1236860-mRNA-1:exon:5976;Parent=Msa1236860-mRNA-1
chr8_2 exon 16077891 16078048 16077891 ID=Msa1236860-mRNA-1:exon:5977;Parent=Msa1236860-mRNA-1
chr8_2 exon 16078195 16079014 16078195 ID=Msa1236860-mRNA-1:exon:5978;Parent=Msa1236860-mRNA-1
chr8_2 exon 16079142 16079306 16079142 ID=Msa1236860-mRNA-1:exon:5979;Parent=Msa1236860-mRNA-1
chr8_2 exon 16079476 16079793 16079476 ID=Msa1236860-mRNA-1:exon:5980;Parent=Msa1236860-mRNA-1
chr8_2 exon 16079876 16079935 16079876 ID=Msa1236860-mRNA-1:exon:5981;Parent=Msa1236860-mRNA-1
chr8_2 exon 16080319 16080927 16080319 ID=Msa1236860-mRNA-1:exon:5982;Parent=Msa1236860-mRNA-1
chr8_2 five_prime_UTR 16075961 16076061 16075961 ID=Msa1236860-mRNA-1:five_prime_utr;Parent=Msa1236860-mRNA-1
chr8_2 five_prime_UTR 16076377 16076405 16076377 ID=Msa1236860-mRNA-1:five_prime_utr;Parent=Msa1236860-mRNA-1
chr8_2 CDS 16076406 16077581 16076406 ID=Msa1236860-mRNA-1:cds;Parent=Msa1236860-mRNA-1
chr8_2 CDS 16077891 16078048 16077891 ID=Msa1236860-mRNA-1:cds;Parent=Msa1236860-mRNA-1
chr8_2 CDS 16078195 16079014 16078195 ID=Msa1236860-mRNA-1:cds;Parent=Msa1236860-mRNA-1
chr8_2 CDS 16079142 16079306 16079142 ID=Msa1236860-mRNA-1:cds;Parent=Msa1236860-mRNA-1
chr8_2 CDS 16079476 16079793 16079476 ID=Msa1236860-mRNA-1:cds;Parent=Msa1236860-mRNA-1
chr8_2 CDS 16079876 16079935 16079876 ID=Msa1236860-mRNA-1:cds;Parent=Msa1236860-mRNA-1
chr8_2 CDS 16080319 16080513 16080319 ID=Msa1236860-mRNA-1:cds;Parent=Msa1236860-mRNA-1
chr8_2 three_prime_UTR 16080514 16080927 16080514 ID=Msa1236860-mRNA-1:three_prime_utr;Parent=Msa1236860-mRNA-1
Gene Sequence

>Msa1236860

ATGACTGCAAATAGTGGGAGAGGAACTGAAGAGCATAAGAGGAAAATCAATGACCCTTTTCCAAGGTCACCTAGATTATGCACACCTATTAGGAAGGAAAATGTGATTGGTAATGAGAATAATAATATTTTGACTAGAAATTTTGCTTCCTTAGCTGGATCTGGACCTCCTAGTACTAGTTTTTGTTCCACCACAGATCCTAAACACATTGTTAGGAATAATAAGAACTTGAATGTAGCTTTAGGTATCCCTCCACATAATTTTAGGCAGCATCAGAGGAATCAATTAGCTATTGAGTCTAAGTATAATAATAGCTTGAGTAGAGAAATTGCACAGAAATCACTTAGATTAAGCAAAGGACAAAAGGGAATTGACTCTAGAAGGAACTTGAATCATGAACAGTATAAAGCTTTTGCTAATATAGGCAATATGGACAATACACATTTTGTTAGCAGTAAAATGCATAGTACTTCAGCTACATCTAGTTATCCTCAAGTGTTAGGAGAGAAAACAGTGAAGGGAAAGGGAATTCTTCATAATGTGATGTCTGGCGTGGAATGTTTTAACGATGGACTCAACTTAAGAGCGTGGATGAAGTCTGAAAGTCATAAAGTGAAGAAATCAGAAAGGCTGTATATATTTAAACAGATTTTGGAATTGGTTGATTTTGCACACTCTCAAGGATTTGTCTTGGAAGACATAAAACCGTCTTGTTTCGTCTTATCGCCTTTGAATAAGATTAAATACATTGGTTCATATAGCCAACATGTGTTTGATGACCAAAAATCATGTTTCACCGTATTTAAGTCATGCCTTAAGGCCATCATGACCTGCAATGGAACAACGAAAATGCCTTGGGAACAGTATACCTGTGCATGCCAAAATTTTAGTGCAAAGAAGCAAAAGCTATGTGAAGAGACAGCATCTCTTAAGGAGCAGCATCACTTCAACTGTATTCATGGCTGTGACACAAAAATGGACATGGAATCAAGTGTTAATAAAGAAAGGTTGTGCCTAGATGGTTCGAGTTATCAGCATGCTTTTGCAGAAGAAAAACAGTTTGTTTATGAAACAATTCAGTTTGAAGAGAAGTGGTATTCTTGTCCAGAAGTTCTCAATGAGGAAACTTGTACATTTTCAACAAATGTTTATAGCCTTGGAGTTCTTCTTTTTGAGTTGCTGTGCAATATTGAGTCATTGGAAGCACATTCAACTGTGATGTTTGATATGCGTCATAGAATCTTGCCGCCAAAATTTCTATCACAAAATGCAAAGGAAGCTGGTTTTTGTCTATGGCTTCTACATCCTGAACCGTCTTCTCGTCCCAATACCAGGATGATTTTAGAATCTGAATTTATACGCGAATTAGAGGCATCAAATTCTGGTGATAATAATGTTATAGTATCTGAAGATGATGTAGCTGACACACAGGAATTACTGCATTTTCTAATTTCAGTTGAAGAAGAAAAGAAAAAACAGGAAGCTAAATTGGCAGAAGAGCTACATTGTTTGAACGAAGATATCAAGGAGGTAGAAAGAAATCATTCGTATGGAAGTGATTCAGCATTTCCACAATTGAACTATCTACCTTATCATGATTCTTCCAGTAAAATTATTAGTAGATCTTTTCCAAGTTCATTTGTTGAAGCAAAATTTATGAATAACATAAGTCAGCTAGAGAATAGTTACTTCTCCATGAGATTCCAAGGCCCGCTCAAGGAAGCTGCAGCCGCCAAAAGCAGTGATAAAAGTGTGATGGAAACCAGATGGAGATTGCCTCATTTAGAGAATGTTGGTAATGGGCCAAAGAGAATTCAAGGTTCTATTGGTTGTCTAGGACCTTTCTATGAAGGTATATGCAAATTCGCTCGTTACAGCAAGTTCGAAGAGCGCGGAACATTGAGAAACAGTGATCTTCTTAGTTCTGCCAATGTGATATGTGCCTTAAGTTTTGACCGCGATGAAGACTACATTGCAGCAGGTGGAATTTCAAAGAAAATAAAGATATTTGACCTCAATGCTATTTCAAGTGATTCTACAGACATTCAGTACCCCGTCGTCGAGATGTCAAACAAATCAAAGCTCAGTTGTGTGTGCTGGAACAGTTATATAAAAAACCATCTGGCATCTACTGATTATGATGGTGTGGTTCAGATGTGGGATGCAGGCTCTGGTCAGCCACTGTCTCAATACACGGAACACCAAAAGAGAGCTTGGTCTGTTCACTTTTCGGCGTCCGACCCAAAAATGTTTGCCAGTGGAAGTGATGATTGTTCTGTCAAACTATGGAATATCAGCGAGGCATGCTTCTTTTTATGCAGAAATTCTATAGGAACCATAATGAGCCCTGCAAATGTATGCTGTGTTCAGTTCTCTGAATACTCCACAAATCTTTTATTTTTTGGATCGGCTGATTACAAAGTGTACGGCTATGATCTTCGTAACACTAAAATCCCTTGGTGTACATTACCTGGTCATGGTAAAGCTGTTAGCTATGTAAAGTTTATAGATGCACAAACAGTTGTGTCTGCTTCCACTGATAACTCTTTGAAGCTATGGGACTTGAAGAAAACTAGCTCAGCCGAGTTGTTATCTGATGCTTGTGACTTAACCTTTAAGGGTCATAGTAATGGAAAGAATTTCGTTGGTTTATCTGTTTTGGATGGATACATTGCCTGTGGTTCAGAATCTAACGAGGTTTACTGTTATCACAAATCTCTGCCAGTGCCAATGGCTTCTCACAAATTCGAGTCAGTCGATCCCATTTCTGGTCATTCAAATAGTAGTGATAACAATGGACAATTTGTTTCTAGTGTCTGCTGGAGGAAGAAGTCTAACATGCTTGTTGCAGCCAACTCAGTTGGAATTGTGAAACTACTTCAGATGGTGTGA
Protein sequence

>Msa1236860

MTANSGRGTEEHKRKINDPFPRSPRLCTPIRKENVIGNENNNILTRNFASLAGSGPPSTSFCSTTDPKHIVRNNKNLNVALGIPPHNFRQHQRNQLAIESKYNNSLSREIAQKSLRLSKGQKGIDSRRNLNHEQYKAFANIGNMDNTHFVSSKMHSTSATSSYPQVLGEKTVKGKGILHNVMSGVECFNDGLNLRAWMKSESHKVKKSERLYIFKQILELVDFAHSQGFVLEDIKPSCFVLSPLNKIKYIGSYSQHVFDDQKSCFTVFKSCLKAIMTCNGTTKMPWEQYTCACQNFSAKKQKLCEETASLKEQHHFNCIHGCDTKMDMESSVNKERLCLDGSSYQHAFAEEKQFVYETIQFEEKWYSCPEVLNEETCTFSTNVYSLGVLLFELLCNIESLEAHSTVMFDMRHRILPPKFLSQNAKEAGFCLWLLHPEPSSRPNTRMILESEFIRELEASNSGDNNVIVSEDDVADTQELLHFLISVEEEKKKQEAKLAEELHCLNEDIKEVERNHSYGSDSAFPQLNYLPYHDSSSKIISRSFPSSFVEAKFMNNISQLENSYFSMRFQGPLKEAAAAKSSDKSVMETRWRLPHLENVGNGPKRIQGSIGCLGPFYEGICKFARYSKFEERGTLRNSDLLSSANVICALSFDRDEDYIAAGGISKKIKIFDLNAISSDSTDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDAGSGQPLSQYTEHQKRAWSVHFSASDPKMFASGSDDCSVKLWNISEACFFLCRNSIGTIMSPANVCCVQFSEYSTNLLFFGSADYKVYGYDLRNTKIPWCTLPGHGKAVSYVKFIDAQTVVSASTDNSLKLWDLKKTSSAELLSDACDLTFKGHSNGKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPMASHKFESVDPISGHSNSSDNNGQFVSSVCWRKKSNMLVAANSVGIVKLLQMV*