AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0892020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0892020 MtrunA17_Chr6g0473931 91.935 186 15 0 4 189 8 193 9.08e-110 312
Msa0892020 MtrunA17_Chr6g0474001 76.440 191 38 3 4 192 29 214 5.27e-103 297
Msa0892020 MtrunA17_Chr6g0473961 77.202 193 32 5 2 189 25 210 2.79e-101 291
Msa0892020 MtrunA17_Chr6g0473941 87.245 196 15 2 4 189 8 203 1.74e-100 289
Msa0892020 MtrunA17_Chr6g0473971 77.436 195 36 3 4 195 29 218 1.62e-98 285
Msa0892020 MtrunA17_Chr6g0473981 74.359 195 41 4 4 195 29 217 9.92e-95 276
Msa0892020 MtrunA17_Chr6g0473781 71.282 195 43 4 4 189 32 222 1.30e-92 270
Msa0892020 MtrunA17_Chr6g0473881 70.500 200 45 3 4 195 85 278 1.26e-91 270
Msa0892020 MtrunA17_Chr6g0473741 72.727 187 46 2 4 189 41 223 7.21e-85 250
Msa0892020 MtrunA17_Chr1g0203861 61.081 185 62 2 7 189 22 198 4.91e-66 201
Msa0892020 MtrunA17_Chr6g0473861 51.899 237 63 4 4 189 38 274 2.97e-65 202
Msa0892020 MtrunA17_Chr5g0398081 46.269 201 76 5 7 184 27 218 2.49e-49 159
Msa0892020 MtrunA17_Chr6g0473771 75.258 97 24 0 6 102 20 116 8.85e-49 154
Msa0892020 MtrunA17_Chr5g0398091 65.487 113 33 1 7 113 32 144 7.71e-47 153
Msa0892020 MtrunA17_Chr5g0398061 66.667 108 30 1 12 113 32 139 4.26e-46 151
Msa0892020 MtrunA17_Chr4g0057231 71.287 101 26 2 7 104 22 122 1.17e-42 140
Msa0892020 MtrunA17_Chr6g0473791 89.041 73 8 0 4 76 32 104 3.90e-42 139
Msa0892020 MtrunA17_Chr7g0265851 46.296 162 79 3 16 169 11 172 1.59e-34 121
Msa0892020 MtrunA17_Chr8g0334801 68.750 80 25 0 24 103 47 126 1.61e-34 121
Msa0892020 MtrunA17_Chr3g0140161 55.238 105 46 1 24 128 38 141 3.25e-34 120
Msa0892020 MtrunA17_Chr2g0321071 43.902 164 75 5 23 169 41 204 2.99e-32 115
Msa0892020 MtrunA17_Chr7g0232261 62.195 82 31 0 22 103 54 135 1.52e-31 114
Msa0892020 MtrunA17_Chr7g0275841 59.091 88 36 0 16 103 15 102 8.76e-31 110
Msa0892020 MtrunA17_Chr5g0399441 62.025 79 30 0 25 103 24 102 2.33e-30 109
Msa0892020 MtrunA17_Chr8g0390091 52.137 117 55 1 2 117 9 125 6.31e-30 110
Msa0892020 MtrunA17_Chr8g0340311 62.025 79 30 0 25 103 43 121 1.81e-29 108
Msa0892020 MtrunA17_Chr2g0331231 53.465 101 41 2 9 103 15 115 3.85e-29 107
Msa0892020 MtrunA17_Chr6g0486701 62.821 78 29 0 26 103 41 118 7.33e-29 107
Msa0892020 MtrunA17_Chr8g0346741 56.383 94 38 1 13 103 23 116 1.49e-28 105
Msa0892020 MtrunA17_Chr4g0055951 62.821 78 29 0 26 103 71 148 2.20e-27 104
Msa0892020 MtrunA17_Chr4g0057241 58.228 79 32 1 25 103 11 88 8.11e-26 97.8
Msa0892020 MtrunA17_Chr4g0017851 55.422 83 37 0 28 110 117 199 1.99e-24 97.4
Msa0892020 MtrunA17_Chr6g0486711 61.628 86 33 0 25 110 45 130 7.14e-24 94.4
Msa0892020 MtrunA17_Chr1g0146191 58.696 92 34 1 16 103 30 121 2.40e-23 93.6
Msa0892020 MtrunA17_Chr5g0396181 45.545 101 53 1 29 127 21 121 8.25e-20 82.8
Msa0892020 MtrunA17_Chr5g0396191 54.945 91 41 0 29 119 11 101 3.92e-19 80.9
Msa0892020 MtrunA17_Chr2g0295421 52.000 75 33 1 13 87 83 154 4.98e-18 79.3
Msa0892020 MtrunA17_Chr1g0150631 56.667 60 26 0 28 87 37 96 7.52e-18 78.6
Msa0892020 MtrunA17_Chr8g0382491 46.237 93 45 2 13 100 95 187 8.47e-18 79.3
Msa0892020 MtrunA17_Chr1g0203831 42.958 142 74 4 29 165 57 196 9.40e-18 77.4
Msa0892020 MtrunA17_Chr5g0437671 62.069 58 22 0 29 86 85 142 1.12e-17 80.1
Msa0892020 MtrunA17_Chr1g0179161 35.260 173 71 7 13 169 3 150 1.30e-17 76.6
Msa0892020 MtrunA17_Chr3g0134161 60.714 56 22 0 29 84 45 100 1.57e-17 76.3
Msa0892020 MtrunA17_Chr7g0221471 45.679 81 44 0 25 105 47 127 1.95e-17 76.3
Msa0892020 MtrunA17_Chr1g0153151 37.374 99 59 1 29 127 44 139 8.65e-17 74.3
Msa0892020 MtrunA17_Chr2g0334031 51.471 68 33 0 17 84 105 172 9.82e-17 77.0
Msa0892020 MtrunA17_Chr3g0115631 59.322 59 24 0 28 86 149 207 1.04e-16 76.6
Msa0892020 MtrunA17_Chr1g0195151 46.512 86 44 1 3 86 49 134 1.33e-16 76.3
Msa0892020 MtrunA17_Chr1g0196781 57.377 61 26 0 24 84 147 207 1.35e-16 76.3
Msa0892020 MtrunA17_Chr7g0221501 44.578 83 46 0 25 107 47 129 1.54e-16 73.9
Msa0892020 MtrunA17_Chr5g0425561 59.322 59 24 0 28 86 172 230 1.62e-16 76.6
Msa0892020 MtrunA17_Chr1g0150671 43.478 92 48 1 28 115 45 136 1.67e-16 75.5
Msa0892020 MtrunA17_Chr1g0150691 50.000 66 33 0 22 87 15 80 1.76e-16 74.7
Msa0892020 MtrunA17_Chr2g0301171 42.857 91 52 0 28 118 18 108 1.98e-16 73.9
Msa0892020 MtrunA17_Chr8g0375031 58.929 56 23 0 29 84 125 180 2.47e-16 74.3
Msa0892020 MtrunA17_Chr8g0383591 56.667 60 26 0 29 88 145 204 3.58e-16 75.1
Msa0892020 MtrunA17_Chr2g0301191 44.706 85 47 0 28 112 18 102 3.78e-16 73.6
Msa0892020 MtrunA17_Chr5g0401871 38.835 103 56 1 29 131 25 120 4.23e-16 72.8
Msa0892020 MtrunA17_Chr2g0324131 59.322 59 24 0 28 86 217 275 4.34e-16 75.5
Msa0892020 MtrunA17_Chr3g0136551 43.529 85 48 0 29 113 65 149 4.51e-16 74.3
Msa0892020 MtrunA17_Chr2g0323171 49.367 79 39 1 29 106 65 143 5.21e-16 72.8
Msa0892020 MtrunA17_Chr4g0044911 60.714 56 22 0 29 84 96 151 5.24e-16 73.6
Msa0892020 MtrunA17_Chr1g0158971 57.895 57 24 0 29 85 115 171 8.03e-16 74.3
Msa0892020 MtrunA17_Chr3g0099871 59.375 64 23 1 21 84 22 82 8.12e-16 72.8
Msa0892020 MtrunA17_Chr1g0150661 53.333 60 28 0 28 87 34 93 8.37e-16 72.8
Msa0892020 MtrunA17_Chr2g0316931 60.714 56 22 0 29 84 31 86 9.56e-16 72.4
Msa0892020 MtrunA17_Chr5g0437371 62.500 56 21 0 29 84 66 121 1.37e-15 73.6
Msa0892020 MtrunA17_Chr4g0044871 58.929 56 23 0 29 84 96 151 2.00e-15 72.0
Msa0892020 MtrunA17_Chr4g0044901 58.929 56 23 0 29 84 96 151 2.22e-15 71.6
Msa0892020 MtrunA17_Chr4g0023411 58.929 56 23 0 29 84 65 120 2.58e-15 70.9
Msa0892020 MtrunA17_Chr1g0186731 54.839 62 27 1 29 89 21 82 2.74e-15 69.7
Msa0892020 MtrunA17_Chr8g0344961 51.515 66 32 0 19 84 114 179 3.34e-15 72.8
Msa0892020 MtrunA17_Chr4g0044881 58.929 56 23 0 29 84 114 169 3.53e-15 71.2
Msa0892020 MtrunA17_Chr7g0225131 50.000 66 30 1 22 87 22 84 4.03e-15 67.8
Msa0892020 MtrunA17_Chr7g0257911 60.714 56 22 0 29 84 31 86 5.36e-15 71.6
Msa0892020 MtrunA17_Chr2g0283181 52.174 69 32 1 17 84 137 205 7.08e-15 71.2
Msa0892020 MtrunA17_Chr3g0136541 43.373 83 47 0 31 113 42 124 1.06e-14 70.1
Msa0892020 MtrunA17_Chr4g0063751 57.143 56 24 0 29 84 7 62 1.18e-14 69.7
Msa0892020 MtrunA17_Chr4g0026881 42.697 89 45 2 1 88 74 157 1.28e-14 69.7
Msa0892020 MtrunA17_Chr2g0297331 56.452 62 26 1 29 89 14 75 1.59e-14 67.4
Msa0892020 MtrunA17_Chr3g0137174 60.714 56 22 0 29 84 8 63 2.13e-14 68.2
Msa0892020 MtrunA17_Chr1g0170531 56.140 57 24 1 29 84 89 145 2.94e-14 68.6
Msa0892020 MtrunA17_Chr4g0003421 57.143 56 24 0 29 84 40 95 3.15e-14 68.9
Msa0892020 MtrunA17_Chr2g0282651 57.143 56 24 0 29 84 70 125 3.56e-14 68.9
Msa0892020 MtrunA17_Chr5g0396911 50.667 75 27 2 16 84 97 167 3.66e-14 69.3
Msa0892020 MtrunA17_Chr2g0333011 53.333 60 28 0 29 88 7 66 3.86e-14 67.4
Msa0892020 MtrunA17_Chr4g0002631 60.714 56 22 0 29 84 8 63 4.92e-14 67.4
Msa0892020 MtrunA17_Chr2g0301181 42.353 85 49 0 28 112 18 102 6.02e-14 67.8
Msa0892020 MtrunA17_Chr1g0189941 50.000 70 35 0 18 87 13 82 6.45e-14 66.6
Msa0892020 MtrunA17_Chr4g0055781 57.895 57 23 1 29 84 102 158 6.73e-14 68.2
Msa0892020 MtrunA17_Chr1g0184081 56.140 57 24 1 29 84 21 77 7.67e-14 65.9
Msa0892020 MtrunA17_Chr1g0186671 57.895 57 23 1 29 84 19 75 7.94e-14 65.5
Msa0892020 MtrunA17_Chr2g0282621 58.929 56 23 0 29 84 15 70 8.02e-14 66.6
Msa0892020 MtrunA17_Chr3g0126321 33.871 124 82 0 29 152 113 236 1.41e-13 68.2
Msa0892020 MtrunA17_Chr4g0055801 46.250 80 42 1 6 84 131 210 1.67e-13 67.4
Msa0892020 MtrunA17_Chr3g0114761 48.315 89 42 2 29 113 25 113 2.76e-13 65.9
Msa0892020 MtrunA17_Chr5g0438831 48.684 76 36 1 9 84 29 101 4.66e-13 66.2
Msa0892020 MtrunA17_Chr5g0438801 55.357 56 25 0 29 84 51 106 7.06e-13 65.5
Msa0892020 MtrunA17_Chr4g0046161 47.826 69 35 1 17 84 45 113 8.32e-13 62.4
Msa0892020 MtrunA17_Chr8g0367911 53.571 56 26 0 29 84 44 99 1.04e-12 65.1
Msa0892020 MtrunA17_Chr5g0396171 47.541 61 32 0 31 91 26 86 1.51e-12 61.2
Msa0892020 MtrunA17_Chr1g0186681 50.820 61 28 1 26 84 16 76 1.56e-12 62.0
Msa0892020 MtrunA17_Chr5g0432821 48.333 60 31 0 25 84 120 179 1.75e-12 64.3
Msa0892020 MtrunA17_Chr4g0062551 47.458 59 31 0 29 87 53 111 1.76e-12 62.0
Msa0892020 MtrunA17_Chr4g0026931 44.706 85 41 3 5 88 112 191 2.32e-12 63.9
Msa0892020 MtrunA17_Chr1g0196871 51.613 62 27 2 24 84 13 72 2.65e-12 60.5
Msa0892020 MtrunA17_Chr7g0253424 43.243 74 41 1 29 102 39 111 3.87e-12 63.5
Msa0892020 MtrunA17_Chr8g0387801 46.914 81 34 2 13 84 82 162 4.71e-12 63.5
Msa0892020 MtrunA17_Chr4g0062161 47.458 59 31 0 29 87 53 111 5.51e-12 62.0
Msa0892020 MtrunA17_Chr8g0378811 43.421 76 40 2 29 102 55 129 5.75e-12 62.8
Msa0892020 MtrunA17_Chr6g0461271 43.023 86 48 1 3 88 8 92 5.83e-12 63.2
Msa0892020 MtrunA17_Chr8g0335331 52.632 57 26 1 29 84 125 181 6.38e-12 62.0
Msa0892020 MtrunA17_Chr4g0055761 56.140 57 24 1 29 84 145 201 8.04e-12 62.4
Msa0892020 MtrunA17_Chr2g0283171 52.632 57 26 1 29 84 63 119 8.89e-12 60.5
Msa0892020 MtrunA17_Chr8g0335311 52.632 57 26 1 29 84 96 152 1.04e-11 61.2
Msa0892020 MtrunA17_Chr5g0412641 55.357 56 25 0 29 84 46 101 1.11e-11 62.8
Msa0892020 MtrunA17_Chr7g0250721 52.632 57 26 1 29 84 61 117 1.38e-11 61.2
Msa0892020 MtrunA17_Chr7g0250731 52.632 57 26 1 29 84 61 117 1.43e-11 60.8
Msa0892020 MtrunA17_Chr8g0350701 50.877 57 28 0 29 85 27 83 1.70e-11 62.0
Msa0892020 MtrunA17_Chr7g0261151 54.386 57 25 1 29 84 20 76 2.07e-11 59.3
Msa0892020 MtrunA17_Chr7g0217991 45.833 72 36 1 13 84 29 97 2.69e-11 61.6
Msa0892020 MtrunA17_Chr3g0129421 54.795 73 32 1 29 100 170 242 3.06e-11 61.2
Msa0892020 MtrunA17_Chr6g0453661 51.786 56 27 0 29 84 38 93 3.88e-11 61.2
Msa0892020 MtrunA17_Chr7g0261101 54.386 57 25 1 29 84 20 76 4.48e-11 58.5
Msa0892020 MtrunA17_Chr5g0396301 48.333 60 29 1 29 86 18 77 6.11e-11 58.5
Msa0892020 MtrunA17_Chr7g0243431 52.381 63 23 1 29 84 78 140 7.50e-11 60.5
Msa0892020 MtrunA17_Chr8g0335321 50.877 57 27 1 29 84 96 152 7.96e-11 58.9
Msa0892020 MtrunA17_Chr7g0250711 50.877 57 27 1 29 84 60 116 8.31e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0892020 AT4G25470.1 56.477 193 69 4 6 190 28 213 9.51e-67 204
Msa0892020 AT4G25480.1 62.805 164 50 2 7 165 29 186 1.40e-61 191
Msa0892020 AT5G51990.1 55.135 185 71 4 6 181 31 212 5.80e-61 189
Msa0892020 AT4G25490.1 58.115 191 61 5 7 184 26 210 3.24e-60 187
Msa0892020 AT1G12610.1 72.477 109 30 0 7 115 8 116 5.65e-53 169
Msa0892020 AT1G63030.2 72.115 104 29 0 12 115 13 116 1.22e-52 167
Msa0892020 AT1G63030.1 72.115 104 29 0 12 115 13 116 1.22e-52 167
Msa0892020 AT5G25810.1 60.638 94 36 1 18 110 24 117 3.48e-34 121
Msa0892020 AT5G11590.1 46.324 136 73 0 25 160 47 182 7.63e-33 118
Msa0892020 AT4G32800.1 53.271 107 44 1 16 116 6 112 1.02e-31 114
Msa0892020 AT2G35700.1 65.000 80 28 0 24 103 40 119 1.98e-31 113
Msa0892020 AT2G44940.1 60.215 93 37 0 18 110 89 181 3.04e-31 115
Msa0892020 AT4G16750.1 53.398 103 43 1 6 103 12 114 6.90e-30 108
Msa0892020 AT1G01250.1 61.250 80 31 0 24 103 40 119 4.35e-29 107
Msa0892020 AT3G16280.1 62.025 79 30 0 25 103 57 135 5.46e-29 108
Msa0892020 AT3G16280.2 62.025 79 30 0 25 103 75 153 8.48e-29 108
Msa0892020 AT2G36450.1 41.212 165 90 4 17 176 3 165 4.60e-28 104
Msa0892020 AT3G60490.1 59.756 82 32 1 23 103 64 145 6.52e-27 103
Msa0892020 AT2G25820.1 63.158 76 28 0 28 103 25 100 6.88e-27 102
Msa0892020 AT5G52020.1 46.795 156 74 5 25 175 61 212 1.32e-25 99.4
Msa0892020 AT1G71450.1 47.170 106 56 0 28 133 23 128 5.46e-24 94.0
Msa0892020 AT1G33760.1 55.056 89 40 0 29 117 20 108 1.02e-20 85.5
Msa0892020 AT1G21910.1 46.000 100 33 2 29 114 50 142 1.41e-20 85.9
Msa0892020 AT2G47520.1 29.375 160 93 4 5 161 23 165 2.43e-20 84.0
Msa0892020 AT1G77200.1 59.740 77 31 0 27 103 41 117 1.17e-19 84.0
Msa0892020 AT1G46768.3 58.730 63 25 1 24 86 27 88 7.61e-19 79.3
Msa0892020 AT1G46768.1 58.730 63 25 1 24 86 27 88 7.80e-19 79.7
Msa0892020 AT1G46768.2 58.730 63 25 1 24 86 27 88 7.80e-19 79.7
Msa0892020 AT4G13620.1 61.017 59 23 0 28 86 231 289 1.20e-18 83.2
Msa0892020 AT4G06746.1 43.333 90 46 1 1 90 13 97 1.93e-18 78.6
Msa0892020 AT1G12630.1 43.919 148 75 2 25 165 15 161 2.10e-18 79.3
Msa0892020 AT2G22200.1 53.333 75 33 1 28 100 70 144 2.38e-18 80.9
Msa0892020 AT3G16770.1 55.556 72 28 1 15 86 69 136 3.63e-18 80.1
Msa0892020 AT1G22190.1 54.795 73 31 1 14 86 70 140 6.79e-18 79.3
Msa0892020 AT4G39780.1 59.016 61 25 0 24 84 88 148 7.36e-18 79.7
Msa0892020 AT3G11020.1 51.282 78 38 0 23 100 72 149 1.53e-17 79.3
Msa0892020 AT5G21960.1 48.810 84 43 0 27 110 5 88 1.61e-17 77.8
Msa0892020 AT5G65130.2 53.247 77 34 1 14 88 96 172 2.33e-17 78.2
Msa0892020 AT5G65130.1 53.247 77 34 1 14 88 94 170 2.36e-17 78.2
Msa0892020 AT2G33710.1 49.383 81 38 1 24 101 65 145 3.55e-17 76.6
Msa0892020 AT2G33710.2 49.383 81 38 1 24 101 65 145 3.98e-17 77.0
Msa0892020 AT1G74930.1 45.349 86 47 0 29 114 21 106 6.01e-17 75.5
Msa0892020 AT4G36900.1 56.667 60 26 0 25 84 26 85 6.19e-17 75.5
Msa0892020 AT1G78080.1 47.674 86 42 2 1 86 127 209 7.21e-17 77.4
Msa0892020 AT3G50260.1 35.537 121 66 2 22 142 14 122 7.90e-17 74.3
Msa0892020 AT2G23340.1 58.929 56 23 0 29 84 28 83 1.60e-16 73.9
Msa0892020 AT5G67190.1 57.143 56 24 0 29 84 21 76 1.85e-16 73.9
Msa0892020 AT1G19210.1 43.333 90 51 0 29 118 12 101 3.63e-16 73.2
Msa0892020 AT5G05410.2 59.322 59 24 0 29 87 79 137 4.52e-16 75.1
Msa0892020 AT5G05410.1 60.714 56 22 0 29 84 79 134 5.62e-16 75.1
Msa0892020 AT1G36060.1 61.404 57 22 0 28 84 142 198 7.28e-16 74.7
Msa0892020 AT4G28140.1 55.932 59 26 0 28 86 142 200 8.81e-16 74.3
Msa0892020 AT2G20880.1 59.649 57 23 0 28 84 186 242 1.02e-15 74.3
Msa0892020 AT3G15210.1 60.714 56 22 0 29 84 25 80 1.43e-15 72.4
Msa0892020 AT5G13330.1 54.688 64 27 1 25 88 37 98 1.91e-15 72.0
Msa0892020 AT3G57600.1 51.389 72 35 0 13 84 12 83 3.63e-15 72.4
Msa0892020 AT5G07580.1 49.367 79 37 2 23 100 106 182 3.85e-15 71.2
Msa0892020 AT5G61890.1 54.688 64 27 1 25 88 88 149 4.03e-15 71.6
Msa0892020 AT5G44210.1 58.929 56 23 0 29 84 33 88 4.29e-15 70.9
Msa0892020 AT5G61600.1 60.656 61 21 2 25 84 86 144 4.64e-15 71.6
Msa0892020 AT1G03800.1 51.471 68 30 1 17 84 44 108 5.26e-15 71.2
Msa0892020 AT1G75490.1 50.000 70 35 0 28 97 41 110 7.40e-15 70.5
Msa0892020 AT5G64750.1 41.304 92 48 2 39 130 195 280 9.54e-15 72.0
Msa0892020 AT1G15360.1 58.929 56 23 0 29 84 7 62 9.84e-15 69.7
Msa0892020 AT1G15360.2 58.929 56 23 0 29 84 7 62 9.84e-15 69.7
Msa0892020 AT5G51190.1 57.143 63 24 2 23 84 68 128 9.99e-15 70.1
Msa0892020 AT1G72360.3 44.737 76 42 0 9 84 54 129 1.56e-14 70.5
Msa0892020 AT5G47230.1 52.778 72 33 1 14 84 141 212 1.70e-14 70.5
Msa0892020 AT1G72360.1 49.206 63 32 0 22 84 18 80 1.70e-14 69.3
Msa0892020 AT5G43410.1 55.000 60 26 1 26 84 12 71 1.75e-14 67.4
Msa0892020 AT4G27950.1 56.140 57 25 0 29 85 118 174 2.18e-14 70.5
Msa0892020 AT4G11140.1 55.357 56 25 0 29 84 87 142 2.43e-14 70.1
Msa0892020 AT1G71520.1 34.043 141 71 5 23 157 8 132 2.49e-14 67.4
Msa0892020 AT4G31060.1 42.683 82 42 1 3 84 6 82 3.68e-14 68.2
Msa0892020 AT5G25190.1 52.941 68 32 0 29 96 8 75 4.14e-14 67.8
Msa0892020 AT1G72360.2 49.206 63 32 0 22 84 69 131 4.59e-14 68.9
Msa0892020 AT5G25390.2 55.357 56 25 0 29 84 7 62 5.30e-14 67.8
Msa0892020 AT3G61630.1 46.835 79 36 1 29 107 105 177 5.70e-14 69.3
Msa0892020 AT3G23230.1 51.613 62 29 1 29 89 20 81 5.98e-14 66.2
Msa0892020 AT1G22810.1 39.785 93 41 2 29 113 14 99 6.20e-14 66.6
Msa0892020 AT1G43160.1 38.931 131 67 4 29 158 61 179 8.79e-14 67.0
Msa0892020 AT3G20310.1 53.226 62 29 0 23 84 21 82 1.96e-13 67.0
Msa0892020 AT2G40340.3 33.858 127 77 2 29 155 72 191 2.39e-13 67.4
Msa0892020 AT2G40340.2 46.479 71 38 0 29 99 14 84 2.41e-13 67.4
Msa0892020 AT2G40340.5 46.479 71 38 0 29 99 14 84 2.41e-13 67.4
Msa0892020 AT2G40340.4 46.479 71 38 0 29 99 14 84 2.41e-13 67.4
Msa0892020 AT5G53290.1 54.386 57 26 0 29 85 125 181 2.92e-13 67.4
Msa0892020 AT1G28370.1 55.357 56 25 0 29 84 20 75 3.68e-13 65.1
Msa0892020 AT1G28360.1 58.929 56 23 0 29 84 12 67 3.91e-13 65.5
Msa0892020 AT5G18450.1 46.250 80 39 1 5 84 14 89 4.15e-13 67.0
Msa0892020 AT4G17490.1 48.780 82 37 3 6 84 114 193 4.52e-13 66.6
Msa0892020 AT2G40340.1 46.479 71 38 0 29 99 72 142 5.15e-13 66.6
Msa0892020 AT1G28370.2 55.357 56 25 0 29 84 58 113 5.86e-13 65.1
Msa0892020 AT2G40340.6 46.479 71 38 0 29 99 79 149 6.01e-13 66.6
Msa0892020 AT4G23750.2 52.632 57 27 0 29 85 122 178 7.81e-13 66.2
Msa0892020 AT4G23750.1 52.632 57 27 0 29 85 122 178 7.81e-13 66.2
Msa0892020 AT1G50640.1 57.143 56 24 0 29 84 28 83 9.83e-13 64.7
Msa0892020 AT5G47220.1 56.140 57 24 1 29 84 117 173 1.21e-12 64.7
Msa0892020 AT2G46310.1 51.786 56 27 0 29 84 99 154 1.63e-12 65.1
Msa0892020 AT5G19790.1 53.448 58 27 0 29 86 22 79 2.00e-12 64.3
Msa0892020 AT1G12890.1 44.872 78 40 1 7 84 2 76 2.79e-12 63.5
Msa0892020 AT1G77640.1 45.556 90 43 1 29 112 43 132 5.76e-12 63.2
Msa0892020 AT5G61590.1 51.250 80 36 2 19 97 99 176 6.26e-12 62.4
Msa0892020 AT3G23240.1 50.000 58 28 1 29 85 82 139 7.96e-12 62.4
Msa0892020 AT4G17500.1 56.140 57 24 1 29 84 148 204 9.57e-12 62.8
Msa0892020 AT1G24590.1 50.769 65 29 1 29 93 58 119 1.60e-11 62.4
Msa0892020 AT1G12980.1 55.357 56 25 0 29 84 57 112 1.79e-11 62.4
Msa0892020 AT5G25390.1 51.786 56 24 1 29 84 7 59 2.04e-11 60.5
Msa0892020 AT2G44840.1 54.386 57 25 1 29 84 92 148 2.35e-11 61.2
Msa0892020 AT2G40350.2 48.214 56 29 0 29 84 74 129 3.77e-11 59.3
Msa0892020 AT2G40350.1 48.214 56 29 0 29 84 67 122 4.62e-11 58.9
Msa0892020 AT5G07310.1 46.835 79 40 1 6 84 71 147 5.48e-11 60.5
Msa0892020 AT2G40220.1 64.286 56 20 0 29 84 55 110 9.13e-11 60.5

Find 55 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAATATATACAGCTTCTT+TGG 0.224514 6_1:+69716503 Msa0892020:three_prime_UTR
GGAAGAGGAACTTAGATAAA+TGG 0.256718 6_1:+69715231 Msa0892020:CDS
ACGTTGCAGCGATGGCATTA+AGG 0.265866 6_1:+69715339 Msa0892020:CDS
TTTCTCCCTGCTGGTTTCTT+CGG 0.268369 6_1:-69715167 None:intergenic
ATATACAGCTTCTTTGGAAT+TGG 0.278848 6_1:+69716509 Msa0892020:three_prime_UTR
TTCTCCCTGCTGGTTTCTTC+GGG 0.296529 6_1:-69715166 None:intergenic
AGCAGGGAGAAAGAAGTTTA+AGG 0.299906 6_1:+69715178 Msa0892020:CDS
TTCATATCTTGAATATTTGA+TGG 0.304471 6_1:+69716579 Msa0892020:three_prime_UTR
CAAATCCTAGTCTTCTTGTT+TGG 0.307227 6_1:-69715272 None:intergenic
GCCAGAGTTGTGGAGGAATA+TGG 0.338237 6_1:+69715604 Msa0892020:CDS
TTAAACTTCTTTCTCCCTGC+TGG 0.375374 6_1:-69715176 None:intergenic
CGTTGCAGCGATGGCATTAA+GGG 0.377499 6_1:+69715340 Msa0892020:CDS
TCGCTGCAACGTCGTGTGCT+CGG 0.389912 6_1:-69715328 None:intergenic
CGCTGCAACGTCGTGTGCTC+GGG 0.398592 6_1:-69715327 None:intergenic
AATGTCCCCTACACATAGTT+TGG 0.427502 6_1:+69715631 Msa0892020:CDS
CAAACAAGAAGACTAGGATT+TGG 0.429238 6_1:+69715273 Msa0892020:CDS
GAAGAGGAACTTAGATAAAT+GGG 0.434368 6_1:+69715232 Msa0892020:CDS
TGTATAGAGGTGTGAGGAAG+AGG 0.474025 6_1:+69715216 Msa0892020:CDS
GTAGTCGTTAATGTCTTGTC+TGG 0.496095 6_1:-69715476 None:intergenic
GCCATATTCCTCCACAACTC+TGG 0.506491 6_1:-69715605 None:intergenic
CTGAAACAAAAGACATTCAA+AGG 0.509319 6_1:+69715423 Msa0892020:CDS
CATGCACCAAACTATGTGTA+GGG 0.511168 6_1:-69715637 None:intergenic
CGGGCAGCCATCTCAGCCGT+TGG 0.512810 6_1:-69715308 None:intergenic
GGCAGCTGCAGAAGCCGCTG+AGG 0.513356 6_1:+69715445 Msa0892020:CDS
TGTGGAAGTCGAAGAAGAAG+AGG 0.518171 6_1:+69715568 Msa0892020:CDS
AGCACACGACGTTGCAGCGA+TGG 0.528674 6_1:+69715331 Msa0892020:CDS
TACTGACATTGACACGGTTG+TGG 0.536605 6_1:+69715496 Msa0892020:CDS
TGTCGTTGCAGTCGAAGAAG+AGG 0.540894 6_1:+69715523 Msa0892020:CDS
AGTTGCCCGAAGAAACCAGC+AGG 0.545231 6_1:+69715161 Msa0892020:CDS
CGAGTCTGCAAAATTGAGAC+AGG 0.547018 6_1:-69715372 None:intergenic
AAGAAGACTAGGATTTGGCT+AGG 0.552639 6_1:+69715278 Msa0892020:CDS
TAAATGGGTGTGTGAAATGA+GGG 0.554317 6_1:+69715247 Msa0892020:CDS
TGTACAATTTCAAGATGAAG+AGG 0.556998 6_1:+69715676 Msa0892020:CDS
GTTTCAGCAGAGGCAGGAGT+AGG 0.561690 6_1:-69715407 None:intergenic
GTTTAGGGAGGGGCAATTAG+CGG 0.561963 6_1:+69715136 Msa0892020:intron
TCATGCACCAAACTATGTGT+AGG 0.576797 6_1:-69715638 None:intergenic
TTCCTCACACCTCTATACAC+CGG 0.578151 6_1:-69715212 None:intergenic
TCCTCACACCTCTATACACC+GGG 0.580421 6_1:-69715211 None:intergenic
GGGAACCAAACAAGAAGACT+AGG 0.587015 6_1:+69715267 Msa0892020:CDS
TGAAACAAAAGACATTCAAA+GGG 0.589399 6_1:+69715424 Msa0892020:CDS
ATAAATGGGTGTGTGAAATG+AGG 0.599450 6_1:+69715246 Msa0892020:CDS
TGTTGAATATGCCAGAGTTG+TGG 0.615027 6_1:+69715594 Msa0892020:CDS
AAACTTAATCACTACAATTG+CGG 0.620324 6_1:-69716449 None:intergenic
GTTGCAGCGATGGCATTAAG+GGG 0.638430 6_1:+69715341 Msa0892020:CDS
AACGACTACTGACATTGACA+CGG 0.655325 6_1:+69715490 Msa0892020:CDS
AGAAGACTAGGATTTGGCTA+GGG 0.661545 6_1:+69715279 Msa0892020:CDS
TTCTTCGACTGCAACGACAA+CGG 0.675808 6_1:-69715519 None:intergenic
GTCTGGTCTGAAAGCCTCAG+CGG 0.676858 6_1:-69715459 None:intergenic
ATGCACCAAACTATGTGTAG+GGG 0.684106 6_1:-69715636 None:intergenic
TGAATATGCCAGAGTTGTGG+AGG 0.686416 6_1:+69715597 Msa0892020:CDS
CAAAATTGAGACAGGCGTAG+CGG 0.688544 6_1:-69715364 None:intergenic
TAATTATGAAGAAACACATG+AGG 0.690127 6_1:-69716484 None:intergenic
ACCCGGTGTATAGAGGTGTG+AGG 0.705873 6_1:+69715210 Msa0892020:CDS
TCACACCTCTATACACCGGG+TGG 0.726886 6_1:-69715208 None:intergenic
GTTGCCCGAAGAAACCAGCA+GGG 0.737979 6_1:+69715162 Msa0892020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTTGTTATATATATATA+CGG - chr6_1:69715019-69715038 None:intergenic 10.0%
!! ATAAAAGAATAATAAAACTT+TGG + chr6_1:69716208-69716227 Msa0892020:intron 10.0%
!! TATGTTGTTATATATATATA+CGG - chr6_1:69715019-69715038 None:intergenic 10.0%
!! ATAAAAGAATAATAAAACTT+TGG + chr6_1:69716208-69716227 Msa0892020:intron 10.0%
!! TCTAATATATACATATGTTT+AGG + chr6_1:69715120-69715139 Msa0892020:intron 15.0%
!! CTAATATATACATATGTTTA+GGG + chr6_1:69715121-69715140 Msa0892020:intron 15.0%
!!! TGTAATAACTTTTTTTTTTG+TGG + chr6_1:69716064-69716083 Msa0892020:intron 15.0%
!! TTGTGAATATAATTACTAAT+TGG + chr6_1:69716152-69716171 Msa0892020:intron 15.0%
!! TGTGAATATAATTACTAATT+GGG + chr6_1:69716153-69716172 Msa0892020:intron 15.0%
!! TCTAATATATACATATGTTT+AGG + chr6_1:69715120-69715139 Msa0892020:intron 15.0%
!! CTAATATATACATATGTTTA+GGG + chr6_1:69715121-69715140 Msa0892020:intron 15.0%
!!! TGTAATAACTTTTTTTTTTG+TGG + chr6_1:69716064-69716083 Msa0892020:intron 15.0%
!! TTGTGAATATAATTACTAAT+TGG + chr6_1:69716152-69716171 Msa0892020:intron 15.0%
!! TGTGAATATAATTACTAATT+GGG + chr6_1:69716153-69716172 Msa0892020:intron 15.0%
!! ATGTATATATTAGAGAAAGT+AGG - chr6_1:69715114-69715133 None:intergenic 20.0%
!!! TGTTTTTTTAGATTGTAGAA+TGG + chr6_1:69715743-69715762 Msa0892020:intron 20.0%
!!! TATACTACAATTTTTGTTAG+TGG + chr6_1:69715774-69715793 Msa0892020:intron 20.0%
!! TCAAAATCCGTATAAATATA+CGG - chr6_1:69715852-69715871 None:intergenic 20.0%
!! TATATTGATATACAACAAGT+TGG + chr6_1:69716002-69716021 Msa0892020:intron 20.0%
!! TATGTATTAATATTGACCTT+TGG + chr6_1:69716249-69716268 Msa0892020:intron 20.0%
!! TATTCATCAACAAAAAAAGA+AGG + chr6_1:69716272-69716291 Msa0892020:intron 20.0%
!! ATTAATATATACAGCTTCTT+TGG + chr6_1:69716503-69716522 Msa0892020:three_prime_UTR 20.0%
!! ATGTATATATTAGAGAAAGT+AGG - chr6_1:69715114-69715133 None:intergenic 20.0%
!!! TGTTTTTTTAGATTGTAGAA+TGG + chr6_1:69715743-69715762 Msa0892020:intron 20.0%
!!! TATACTACAATTTTTGTTAG+TGG + chr6_1:69715774-69715793 Msa0892020:intron 20.0%
!! TCAAAATCCGTATAAATATA+CGG - chr6_1:69715852-69715871 None:intergenic 20.0%
!! TATATTGATATACAACAAGT+TGG + chr6_1:69716002-69716021 Msa0892020:intron 20.0%
!! TATGTATTAATATTGACCTT+TGG + chr6_1:69716249-69716268 Msa0892020:intron 20.0%
!! TATTCATCAACAAAAAAAGA+AGG + chr6_1:69716272-69716291 Msa0892020:intron 20.0%
!! ATTAATATATACAGCTTCTT+TGG + chr6_1:69716503-69716522 Msa0892020:three_prime_UTR 20.0%
! TATTAGAGAAAGTAGGAAAA+AGG - chr6_1:69715107-69715126 None:intergenic 25.0%
! ATATATACATATGTTTAGGG+AGG + chr6_1:69715124-69715143 Msa0892020:intron 25.0%
! TATATACATATGTTTAGGGA+GGG + chr6_1:69715125-69715144 Msa0892020:intron 25.0%
! TGAAACAAAAGACATTCAAA+GGG + chr6_1:69715424-69715443 Msa0892020:CDS 25.0%
!! TACAATTTTTGTTAGTGGTA+TGG + chr6_1:69715779-69715798 Msa0892020:intron 25.0%
!!! ATGTTTTGTTTACACAGTTT+AGG + chr6_1:69715817-69715836 Msa0892020:intron 25.0%
!! ACAAGTACCGTATATTTATA+CGG + chr6_1:69715842-69715861 Msa0892020:intron 25.0%
!!! TTTTTGTTGATGAATACCAA+AGG - chr6_1:69716268-69716287 None:intergenic 25.0%
! TAGCTAATTGCAATATATTG+AGG + chr6_1:69716334-69716353 Msa0892020:intron 25.0%
! AGCTAATTGCAATATATTGA+GGG + chr6_1:69716335-69716354 Msa0892020:intron 25.0%
! AAAAATCAGTTACAATGACT+TGG + chr6_1:69716419-69716438 Msa0892020:exon 25.0%
! AAACTTAATCACTACAATTG+CGG - chr6_1:69716452-69716471 None:intergenic 25.0%
! TAATTATGAAGAAACACATG+AGG - chr6_1:69716487-69716506 None:intergenic 25.0%
! TATTAGAGAAAGTAGGAAAA+AGG - chr6_1:69715107-69715126 None:intergenic 25.0%
! ATATATACATATGTTTAGGG+AGG + chr6_1:69715124-69715143 Msa0892020:intron 25.0%
! TATATACATATGTTTAGGGA+GGG + chr6_1:69715125-69715144 Msa0892020:intron 25.0%
! TGAAACAAAAGACATTCAAA+GGG + chr6_1:69715424-69715443 Msa0892020:CDS 25.0%
!! TACAATTTTTGTTAGTGGTA+TGG + chr6_1:69715779-69715798 Msa0892020:intron 25.0%
!!! ATGTTTTGTTTACACAGTTT+AGG + chr6_1:69715817-69715836 Msa0892020:intron 25.0%
!! ACAAGTACCGTATATTTATA+CGG + chr6_1:69715842-69715861 Msa0892020:intron 25.0%
!!! TTTTTGTTGATGAATACCAA+AGG - chr6_1:69716268-69716287 None:intergenic 25.0%
! TAGCTAATTGCAATATATTG+AGG + chr6_1:69716334-69716353 Msa0892020:intron 25.0%
! AGCTAATTGCAATATATTGA+GGG + chr6_1:69716335-69716354 Msa0892020:intron 25.0%
! AAAAATCAGTTACAATGACT+TGG + chr6_1:69716419-69716438 Msa0892020:exon 25.0%
! AAACTTAATCACTACAATTG+CGG - chr6_1:69716452-69716471 None:intergenic 25.0%
! TAATTATGAAGAAACACATG+AGG - chr6_1:69716487-69716506 None:intergenic 25.0%
ATATACATATGTTTAGGGAG+GGG + chr6_1:69715126-69715145 Msa0892020:intron 30.0%
GAAGAGGAACTTAGATAAAT+GGG + chr6_1:69715232-69715251 Msa0892020:CDS 30.0%
CTGAAACAAAAGACATTCAA+AGG + chr6_1:69715423-69715442 Msa0892020:CDS 30.0%
TGTACAATTTCAAGATGAAG+AGG + chr6_1:69715676-69715695 Msa0892020:CDS 30.0%
!! ACTTCTAAAGTTGAAGTGTT+TGG + chr6_1:69715711-69715730 Msa0892020:intron 30.0%
! CAACAAGTTGGAATTTCAAA+AGG + chr6_1:69716014-69716033 Msa0892020:intron 30.0%
TGCACAATATATGTAAGATC+CGG - chr6_1:69716106-69716125 None:intergenic 30.0%
TTGATTGCAATTTCAACTGT+TGG + chr6_1:69716298-69716317 Msa0892020:intron 30.0%
!!! TTTTTTCTCTTCTCTTTTGC+AGG + chr6_1:69716388-69716407 Msa0892020:intron 30.0%
!! ATATACAGCTTCTTTGGAAT+TGG + chr6_1:69716509-69716528 Msa0892020:three_prime_UTR 30.0%
ATATACATATGTTTAGGGAG+GGG + chr6_1:69715126-69715145 Msa0892020:intron 30.0%
GAAGAGGAACTTAGATAAAT+GGG + chr6_1:69715232-69715251 Msa0892020:CDS 30.0%
CTGAAACAAAAGACATTCAA+AGG + chr6_1:69715423-69715442 Msa0892020:CDS 30.0%
TGTACAATTTCAAGATGAAG+AGG + chr6_1:69715676-69715695 Msa0892020:CDS 30.0%
!! ACTTCTAAAGTTGAAGTGTT+TGG + chr6_1:69715711-69715730 Msa0892020:intron 30.0%
! CAACAAGTTGGAATTTCAAA+AGG + chr6_1:69716014-69716033 Msa0892020:intron 30.0%
TGCACAATATATGTAAGATC+CGG - chr6_1:69716106-69716125 None:intergenic 30.0%
TTGATTGCAATTTCAACTGT+TGG + chr6_1:69716298-69716317 Msa0892020:intron 30.0%
!!! TTTTTTCTCTTCTCTTTTGC+AGG + chr6_1:69716388-69716407 Msa0892020:intron 30.0%
!! ATATACAGCTTCTTTGGAAT+TGG + chr6_1:69716509-69716528 Msa0892020:three_prime_UTR 30.0%
!!! AAGGTTTTGAGAGAGAAAGT+GGG - chr6_1:69715088-69715107 None:intergenic 35.0%
!!! AAAGGTTTTGAGAGAGAAAG+TGG - chr6_1:69715089-69715108 None:intergenic 35.0%
GGAAGAGGAACTTAGATAAA+TGG + chr6_1:69715231-69715250 Msa0892020:CDS 35.0%
ATAAATGGGTGTGTGAAATG+AGG + chr6_1:69715246-69715265 Msa0892020:CDS 35.0%
TAAATGGGTGTGTGAAATGA+GGG + chr6_1:69715247-69715266 Msa0892020:CDS 35.0%
! CAAATCCTAGTCTTCTTGTT+TGG - chr6_1:69715275-69715294 None:intergenic 35.0%
CAAACAAGAAGACTAGGATT+TGG + chr6_1:69715273-69715292 Msa0892020:CDS 35.0%
!! AATGTCTTTTGTTTCAGCAG+AGG - chr6_1:69715420-69715439 None:intergenic 35.0%
!! AGTGCTGAATATGTTTTGTG+TGG + chr6_1:69715550-69715569 Msa0892020:CDS 35.0%
!!! AAGGTTTTGAGAGAGAAAGT+GGG - chr6_1:69715088-69715107 None:intergenic 35.0%
!!! AAAGGTTTTGAGAGAGAAAG+TGG - chr6_1:69715089-69715108 None:intergenic 35.0%
GGAAGAGGAACTTAGATAAA+TGG + chr6_1:69715231-69715250 Msa0892020:CDS 35.0%
ATAAATGGGTGTGTGAAATG+AGG + chr6_1:69715246-69715265 Msa0892020:CDS 35.0%
TAAATGGGTGTGTGAAATGA+GGG + chr6_1:69715247-69715266 Msa0892020:CDS 35.0%
! CAAATCCTAGTCTTCTTGTT+TGG - chr6_1:69715275-69715294 None:intergenic 35.0%
CAAACAAGAAGACTAGGATT+TGG + chr6_1:69715273-69715292 Msa0892020:CDS 35.0%
!! AATGTCTTTTGTTTCAGCAG+AGG - chr6_1:69715420-69715439 None:intergenic 35.0%
!! AGTGCTGAATATGTTTTGTG+TGG + chr6_1:69715550-69715569 Msa0892020:CDS 35.0%
AAGATAGAGAGTTGGAGAGT+AGG - chr6_1:69715060-69715079 None:intergenic 40.0%
TTAAACTTCTTTCTCCCTGC+TGG - chr6_1:69715179-69715198 None:intergenic 40.0%
AGCAGGGAGAAAGAAGTTTA+AGG + chr6_1:69715178-69715197 Msa0892020:CDS 40.0%
AAGAAGACTAGGATTTGGCT+AGG + chr6_1:69715278-69715297 Msa0892020:CDS 40.0%
AGAAGACTAGGATTTGGCTA+GGG + chr6_1:69715279-69715298 Msa0892020:CDS 40.0%
! CTGTCTCAATTTTGCAGACT+CGG + chr6_1:69715373-69715392 Msa0892020:CDS 40.0%
GTAGTCGTTAATGTCTTGTC+TGG - chr6_1:69715479-69715498 None:intergenic 40.0%
AACGACTACTGACATTGACA+CGG + chr6_1:69715490-69715509 Msa0892020:CDS 40.0%
TGTTGAATATGCCAGAGTTG+TGG + chr6_1:69715594-69715613 Msa0892020:CDS 40.0%
AATGTCCCCTACACATAGTT+TGG + chr6_1:69715631-69715650 Msa0892020:CDS 40.0%
ATGCACCAAACTATGTGTAG+GGG - chr6_1:69715639-69715658 None:intergenic 40.0%
CATGCACCAAACTATGTGTA+GGG - chr6_1:69715640-69715659 None:intergenic 40.0%
TCATGCACCAAACTATGTGT+AGG - chr6_1:69715641-69715660 None:intergenic 40.0%
!! AAGATGAAGAGGTATCGCTA+TGG + chr6_1:69715687-69715706 Msa0892020:intron 40.0%
!! AAGTCCACACTCGTTGATTT+AGG + chr6_1:69715929-69715948 Msa0892020:intron 40.0%
!! AGTCCACACTCGTTGATTTA+GGG + chr6_1:69715930-69715949 Msa0892020:intron 40.0%
!! TGATTTAGGGTGTTGAGATG+TGG + chr6_1:69715943-69715962 Msa0892020:intron 40.0%
TGGTGATCGAAGTTTAACTC+CGG + chr6_1:69716084-69716103 Msa0892020:intron 40.0%
TCACAATAGCTTAGCTCAGT+TGG - chr6_1:69716138-69716157 None:intergenic 40.0%
CAATTTCAACTGTTGGCGTT+TGG + chr6_1:69716305-69716324 Msa0892020:intron 40.0%
AAGATAGAGAGTTGGAGAGT+AGG - chr6_1:69715060-69715079 None:intergenic 40.0%
TTAAACTTCTTTCTCCCTGC+TGG - chr6_1:69715179-69715198 None:intergenic 40.0%
AGCAGGGAGAAAGAAGTTTA+AGG + chr6_1:69715178-69715197 Msa0892020:CDS 40.0%
AAGAAGACTAGGATTTGGCT+AGG + chr6_1:69715278-69715297 Msa0892020:CDS 40.0%
AGAAGACTAGGATTTGGCTA+GGG + chr6_1:69715279-69715298 Msa0892020:CDS 40.0%
! CTGTCTCAATTTTGCAGACT+CGG + chr6_1:69715373-69715392 Msa0892020:CDS 40.0%
GTAGTCGTTAATGTCTTGTC+TGG - chr6_1:69715479-69715498 None:intergenic 40.0%
AACGACTACTGACATTGACA+CGG + chr6_1:69715490-69715509 Msa0892020:CDS 40.0%
TGTTGAATATGCCAGAGTTG+TGG + chr6_1:69715594-69715613 Msa0892020:CDS 40.0%
AATGTCCCCTACACATAGTT+TGG + chr6_1:69715631-69715650 Msa0892020:CDS 40.0%
ATGCACCAAACTATGTGTAG+GGG - chr6_1:69715639-69715658 None:intergenic 40.0%
CATGCACCAAACTATGTGTA+GGG - chr6_1:69715640-69715659 None:intergenic 40.0%
TCATGCACCAAACTATGTGT+AGG - chr6_1:69715641-69715660 None:intergenic 40.0%
!! AAGATGAAGAGGTATCGCTA+TGG + chr6_1:69715687-69715706 Msa0892020:intron 40.0%
!! AAGTCCACACTCGTTGATTT+AGG + chr6_1:69715929-69715948 Msa0892020:intron 40.0%
!! AGTCCACACTCGTTGATTTA+GGG + chr6_1:69715930-69715949 Msa0892020:intron 40.0%
!! TGATTTAGGGTGTTGAGATG+TGG + chr6_1:69715943-69715962 Msa0892020:intron 40.0%
TGGTGATCGAAGTTTAACTC+CGG + chr6_1:69716084-69716103 Msa0892020:intron 40.0%
TCACAATAGCTTAGCTCAGT+TGG - chr6_1:69716138-69716157 None:intergenic 40.0%
CAATTTCAACTGTTGGCGTT+TGG + chr6_1:69716305-69716324 Msa0892020:intron 40.0%
GGGAACTGAAGATAGAGAGT+TGG - chr6_1:69715068-69715087 None:intergenic 45.0%
!! TTTCTCCCTGCTGGTTTCTT+CGG - chr6_1:69715170-69715189 None:intergenic 45.0%
TTCCTCACACCTCTATACAC+CGG - chr6_1:69715215-69715234 None:intergenic 45.0%
! TGTATAGAGGTGTGAGGAAG+AGG + chr6_1:69715216-69715235 Msa0892020:CDS 45.0%
GGGAACCAAACAAGAAGACT+AGG + chr6_1:69715267-69715286 Msa0892020:CDS 45.0%
! TTGGCTAGGGACTTTTCCAA+CGG + chr6_1:69715292-69715311 Msa0892020:CDS 45.0%
CAAAATTGAGACAGGCGTAG+CGG - chr6_1:69715367-69715386 None:intergenic 45.0%
CGAGTCTGCAAAATTGAGAC+AGG - chr6_1:69715375-69715394 None:intergenic 45.0%
!!! TCAATTTTGCAGACTCGGTG+TGG + chr6_1:69715378-69715397 Msa0892020:CDS 45.0%
!! TCTTTTGTTTCAGCAGAGGC+AGG - chr6_1:69715416-69715435 None:intergenic 45.0%
TACTGACATTGACACGGTTG+TGG + chr6_1:69715496-69715515 Msa0892020:CDS 45.0%
TTCTTCGACTGCAACGACAA+CGG - chr6_1:69715522-69715541 None:intergenic 45.0%
TGTGGAAGTCGAAGAAGAAG+AGG + chr6_1:69715568-69715587 Msa0892020:CDS 45.0%
TGAATATGCCAGAGTTGTGG+AGG + chr6_1:69715597-69715616 Msa0892020:CDS 45.0%
TCAACGAGTGTGGACTTCTT+CGG - chr6_1:69715926-69715945 None:intergenic 45.0%
ACACCCTAAATCAACGAGTG+TGG - chr6_1:69715936-69715955 None:intergenic 45.0%
GGGAACTGAAGATAGAGAGT+TGG - chr6_1:69715068-69715087 None:intergenic 45.0%
!! TTTCTCCCTGCTGGTTTCTT+CGG - chr6_1:69715170-69715189 None:intergenic 45.0%
TTCCTCACACCTCTATACAC+CGG - chr6_1:69715215-69715234 None:intergenic 45.0%
! TGTATAGAGGTGTGAGGAAG+AGG + chr6_1:69715216-69715235 Msa0892020:CDS 45.0%
GGGAACCAAACAAGAAGACT+AGG + chr6_1:69715267-69715286 Msa0892020:CDS 45.0%
! TTGGCTAGGGACTTTTCCAA+CGG + chr6_1:69715292-69715311 Msa0892020:CDS 45.0%
CAAAATTGAGACAGGCGTAG+CGG - chr6_1:69715367-69715386 None:intergenic 45.0%
CGAGTCTGCAAAATTGAGAC+AGG - chr6_1:69715375-69715394 None:intergenic 45.0%
!!! TCAATTTTGCAGACTCGGTG+TGG + chr6_1:69715378-69715397 Msa0892020:CDS 45.0%
!! TCTTTTGTTTCAGCAGAGGC+AGG - chr6_1:69715416-69715435 None:intergenic 45.0%
TACTGACATTGACACGGTTG+TGG + chr6_1:69715496-69715515 Msa0892020:CDS 45.0%
TTCTTCGACTGCAACGACAA+CGG - chr6_1:69715522-69715541 None:intergenic 45.0%
TGTGGAAGTCGAAGAAGAAG+AGG + chr6_1:69715568-69715587 Msa0892020:CDS 45.0%
TGAATATGCCAGAGTTGTGG+AGG + chr6_1:69715597-69715616 Msa0892020:CDS 45.0%
TCAACGAGTGTGGACTTCTT+CGG - chr6_1:69715926-69715945 None:intergenic 45.0%
ACACCCTAAATCAACGAGTG+TGG - chr6_1:69715936-69715955 None:intergenic 45.0%
GTTTAGGGAGGGGCAATTAG+CGG + chr6_1:69715136-69715155 Msa0892020:intron 50.0%
!! TTCTCCCTGCTGGTTTCTTC+GGG - chr6_1:69715169-69715188 None:intergenic 50.0%
TCCTCACACCTCTATACACC+GGG - chr6_1:69715214-69715233 None:intergenic 50.0%
! GACTTTTCCAACGGCTGAGA+TGG + chr6_1:69715301-69715320 Msa0892020:CDS 50.0%
ACGTTGCAGCGATGGCATTA+AGG + chr6_1:69715339-69715358 Msa0892020:CDS 50.0%
CGTTGCAGCGATGGCATTAA+GGG + chr6_1:69715340-69715359 Msa0892020:CDS 50.0%
GTTGCAGCGATGGCATTAAG+GGG + chr6_1:69715341-69715360 Msa0892020:CDS 50.0%
!!! ATTTTGCAGACTCGGTGTGG+AGG + chr6_1:69715381-69715400 Msa0892020:CDS 50.0%
TGTCGTTGCAGTCGAAGAAG+AGG + chr6_1:69715523-69715542 Msa0892020:CDS 50.0%
GCCAGAGTTGTGGAGGAATA+TGG + chr6_1:69715604-69715623 Msa0892020:CDS 50.0%
GCCATATTCCTCCACAACTC+TGG - chr6_1:69715608-69715627 None:intergenic 50.0%
GTTTAGGGAGGGGCAATTAG+CGG + chr6_1:69715136-69715155 Msa0892020:intron 50.0%
!! TTCTCCCTGCTGGTTTCTTC+GGG - chr6_1:69715169-69715188 None:intergenic 50.0%
TCCTCACACCTCTATACACC+GGG - chr6_1:69715214-69715233 None:intergenic 50.0%
! GACTTTTCCAACGGCTGAGA+TGG + chr6_1:69715301-69715320 Msa0892020:CDS 50.0%
ACGTTGCAGCGATGGCATTA+AGG + chr6_1:69715339-69715358 Msa0892020:CDS 50.0%
CGTTGCAGCGATGGCATTAA+GGG + chr6_1:69715340-69715359 Msa0892020:CDS 50.0%
GTTGCAGCGATGGCATTAAG+GGG + chr6_1:69715341-69715360 Msa0892020:CDS 50.0%
!!! ATTTTGCAGACTCGGTGTGG+AGG + chr6_1:69715381-69715400 Msa0892020:CDS 50.0%
TGTCGTTGCAGTCGAAGAAG+AGG + chr6_1:69715523-69715542 Msa0892020:CDS 50.0%
GCCAGAGTTGTGGAGGAATA+TGG + chr6_1:69715604-69715623 Msa0892020:CDS 50.0%
GCCATATTCCTCCACAACTC+TGG - chr6_1:69715608-69715627 None:intergenic 50.0%
AGTTGCCCGAAGAAACCAGC+AGG + chr6_1:69715161-69715180 Msa0892020:CDS 55.0%
GTTGCCCGAAGAAACCAGCA+GGG + chr6_1:69715162-69715181 Msa0892020:CDS 55.0%
GTTTAAGGAGACTCGCCACC+CGG + chr6_1:69715193-69715212 Msa0892020:CDS 55.0%
TCACACCTCTATACACCGGG+TGG - chr6_1:69715211-69715230 None:intergenic 55.0%
! ACCCGGTGTATAGAGGTGTG+AGG + chr6_1:69715210-69715229 Msa0892020:CDS 55.0%
GTTTCAGCAGAGGCAGGAGT+AGG - chr6_1:69715410-69715429 None:intergenic 55.0%
GTCTGGTCTGAAAGCCTCAG+CGG - chr6_1:69715462-69715481 None:intergenic 55.0%
AGTTGCCCGAAGAAACCAGC+AGG + chr6_1:69715161-69715180 Msa0892020:CDS 55.0%
GTTGCCCGAAGAAACCAGCA+GGG + chr6_1:69715162-69715181 Msa0892020:CDS 55.0%
GTTTAAGGAGACTCGCCACC+CGG + chr6_1:69715193-69715212 Msa0892020:CDS 55.0%
TCACACCTCTATACACCGGG+TGG - chr6_1:69715211-69715230 None:intergenic 55.0%
! ACCCGGTGTATAGAGGTGTG+AGG + chr6_1:69715210-69715229 Msa0892020:CDS 55.0%
GTTTCAGCAGAGGCAGGAGT+AGG - chr6_1:69715410-69715429 None:intergenic 55.0%
GTCTGGTCTGAAAGCCTCAG+CGG - chr6_1:69715462-69715481 None:intergenic 55.0%
ACTCGCCACCCGGTGTATAG+AGG + chr6_1:69715203-69715222 Msa0892020:CDS 60.0%
TCGCTGCAACGTCGTGTGCT+CGG - chr6_1:69715331-69715350 None:intergenic 60.0%
AGCACACGACGTTGCAGCGA+TGG + chr6_1:69715331-69715350 Msa0892020:CDS 60.0%
ACTCGCCACCCGGTGTATAG+AGG + chr6_1:69715203-69715222 Msa0892020:CDS 60.0%
TCGCTGCAACGTCGTGTGCT+CGG - chr6_1:69715331-69715350 None:intergenic 60.0%
AGCACACGACGTTGCAGCGA+TGG + chr6_1:69715331-69715350 Msa0892020:CDS 60.0%
CGCTGCAACGTCGTGTGCTC+GGG - chr6_1:69715330-69715349 None:intergenic 65.0%
CGCTGCAACGTCGTGTGCTC+GGG - chr6_1:69715330-69715349 None:intergenic 65.0%
CGGGCAGCCATCTCAGCCGT+TGG - chr6_1:69715311-69715330 None:intergenic 70.0%
GGCAGCTGCAGAAGCCGCTG+AGG + chr6_1:69715445-69715464 Msa0892020:CDS 70.0%
CGGGCAGCCATCTCAGCCGT+TGG - chr6_1:69715311-69715330 None:intergenic 70.0%
GGCAGCTGCAGAAGCCGCTG+AGG + chr6_1:69715445-69715464 Msa0892020:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 69715010 69716598 69715010 ID=Msa0892020;Name=Msa0892020
chr6_1 mRNA 69715010 69716598 69715010 ID=Msa0892020-mRNA-1;Parent=Msa0892020;Name=Msa0892020-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.33|0.66|0|0|3|162|196
chr6_1 exon 69715010 69715017 69715010 ID=Msa0892020-mRNA-1:exon:12187;Parent=Msa0892020-mRNA-1
chr6_1 exon 69715142 69715697 69715142 ID=Msa0892020-mRNA-1:exon:12188;Parent=Msa0892020-mRNA-1
chr6_1 exon 69716410 69716598 69716410 ID=Msa0892020-mRNA-1:exon:12189;Parent=Msa0892020-mRNA-1
chr6_1 CDS 69715010 69715017 69715010 ID=Msa0892020-mRNA-1:cds;Parent=Msa0892020-mRNA-1
chr6_1 CDS 69715142 69715697 69715142 ID=Msa0892020-mRNA-1:cds;Parent=Msa0892020-mRNA-1
chr6_1 CDS 69716410 69716436 69716410 ID=Msa0892020-mRNA-1:cds;Parent=Msa0892020-mRNA-1
chr6_1 three_prime_UTR 69716437 69716598 69716437 ID=Msa0892020-mRNA-1:three_prime_utr;Parent=Msa0892020-mRNA-1
Gene Sequence

>Msa0892020

ATGCTTCCGGAGGGGCAATTAGCGGCAAGTTGCCCGAAGAAACCAGCAGGGAGAAAGAAGTTTAAGGAGACTCGCCACCCGGTGTATAGAGGTGTGAGGAAGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAACCAAACAAGAAGACTAGGATTTGGCTAGGGACTTTTCCAACGGCTGAGATGGCTGCCCGAGCACACGACGTTGCAGCGATGGCATTAAGGGGCCGCTACGCCTGTCTCAATTTTGCAGACTCGGTGTGGAGGCTTCCTACTCCTGCCTCTGCTGAAACAAAAGACATTCAAAGGGCAGCTGCAGAAGCCGCTGAGGCTTTCAGACCAGACAAGACATTAACGACTACTGACATTGACACGGTTGTGGCCGTTGTCGTTGCAGTCGAAGAAGAGGAAGAAGTGCTGAATATGTTTTGTGTGGAAGTCGAAGAAGAAGAGGAAGTGTTGAATATGCCAGAGTTGTGGAGGAATATGGCACTAATGTCCCCTACACATAGTTTGGTGCATGAGTATGAAGATTTTGATGTACAATTTCAAGATGAAGAGGTATTAAAAAAAAATCAGTTACAATGA
Protein sequence

>Msa0892020

MLPEGQLAASCPKKPAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPTPASAETKDIQRAAAEAAEAFRPDKTLTTTDIDTVVAVVVAVEEEEEVLNMFCVEVEEEEEVLNMPELWRNMALMSPTHSLVHEYEDFDVQFQDEEVLKKNQLQ*