AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0995540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0995540 MtrunA17_Chr7g0236991 65.766 555 163 3 1 531 1 552 0.0 763
Msa0995540 MtrunA17_Chr7g0237001 65.586 555 164 3 1 531 1 552 0.0 761
Msa0995540 MtrunA17_Chr7g0237041 65.586 555 164 3 1 531 1 552 0.0 761
Msa0995540 MtrunA17_Chr7g0237081 65.586 555 164 3 1 531 1 552 0.0 761
Msa0995540 MtrunA17_Chr7g0237051 65.586 555 164 3 1 531 1 552 0.0 761
Msa0995540 MtrunA17_Chr6g0465441 65.036 552 169 2 4 531 1 552 0.0 757
Msa0995540 MtrunA17_Chr5g0425371 66.306 555 160 3 1 531 1 552 0.0 746
Msa0995540 MtrunA17_Chr4g0024691 65.823 553 165 2 3 531 8 560 0.0 744
Msa0995540 MtrunA17_Chr6g0451711 63.669 556 177 3 1 531 1 556 0.0 738
Msa0995540 MtrunA17_Chr6g0465911 64.685 555 169 3 1 531 1 552 0.0 738
Msa0995540 MtrunA17_Chr6g0466051 64.505 555 170 3 1 531 1 552 0.0 736
Msa0995540 MtrunA17_Chr3g0105071 63.964 555 175 3 1 530 1 555 0.0 734
Msa0995540 MtrunA17_Chr3g0082691 62.385 545 180 3 12 531 8 552 0.0 703
Msa0995540 MtrunA17_Chr6g0465851 65.571 517 154 2 39 531 1 517 0.0 695
Msa0995540 MtrunA17_Chr5g0431571 62.868 544 177 3 12 530 4 547 0.0 691
Msa0995540 MtrunA17_Chr7g0236961 65.996 497 145 2 59 531 1 497 0.0 689
Msa0995540 MtrunA17_Chr7g0237011 65.996 497 145 2 59 531 1 497 0.0 688
Msa0995540 MtrunA17_Chr5g0431651 60.682 557 187 5 1 531 1 551 0.0 686
Msa0995540 MtrunA17_Chr4g0042111 54.856 556 224 4 2 531 7 561 0.0 617
Msa0995540 MtrunA17_Chr7g0236971 68.250 400 121 1 138 531 1 400 0.0 588
Msa0995540 MtrunA17_Chr6g0465981 63.830 376 109 3 1 352 1 373 1.17e-171 489
Msa0995540 MtrunA17_Chr6g0465871 63.830 376 109 3 1 352 1 373 1.17e-171 489
Msa0995540 MtrunA17_Chr6g0466081 63.830 376 109 3 1 352 1 373 1.17e-171 489
Msa0995540 MtrunA17_Chr2g0319041 43.040 546 279 8 15 530 12 555 2.12e-158 462
Msa0995540 MtrunA17_Chr6g0466111 65.089 338 94 2 39 352 1 338 5.19e-155 446
Msa0995540 MtrunA17_Chr6g0465931 64.793 338 95 2 39 352 1 338 4.49e-154 443
Msa0995540 MtrunA17_Chr8g0336181 43.431 548 278 8 13 530 9 554 2.54e-152 447
Msa0995540 MtrunA17_Chr7g0236951 65.714 315 84 2 59 349 1 315 1.94e-149 431
Msa0995540 MtrunA17_Chr7g0237031 65.714 315 84 2 59 349 1 315 4.45e-149 430
Msa0995540 MtrunA17_Chr2g0319051 42.661 511 263 8 48 530 4 512 1.59e-145 428
Msa0995540 MtrunA17_Chr6g0466031 65.637 259 89 0 273 531 1 259 7.41e-121 355
Msa0995540 MtrunA17_Chr5g0445511 65.690 239 76 1 133 365 1 239 5.32e-113 335
Msa0995540 MtrunA17_Chr4g0008621 42.381 420 213 7 2 393 7 425 2.53e-110 335
Msa0995540 MtrunA17_Chr7g0237061 60.618 259 79 2 273 531 1 236 5.64e-108 322
Msa0995540 MtrunA17_Chr2g0319071 36.204 511 264 11 44 532 19 489 1.15e-102 317
Msa0995540 MtrunA17_Chr4g0023911 32.234 546 335 6 13 530 41 579 4.34e-96 303
Msa0995540 MtrunA17_Chr2g0323131 34.127 504 307 10 49 532 67 565 1.43e-95 301
Msa0995540 MtrunA17_Chr2g0310331 33.641 541 325 9 17 531 53 585 5.01e-94 298
Msa0995540 MtrunA17_Chr2g0323151 33.947 489 282 7 71 531 4 479 6.10e-93 292
Msa0995540 MtrunA17_Chr8g0357411 31.273 550 345 7 8 531 46 588 1.09e-82 268
Msa0995540 MtrunA17_Chr7g0237021 67.251 171 56 0 361 531 1 171 5.05e-82 253
Msa0995540 MtrunA17_Chr7g0236941 67.251 171 56 0 361 531 1 171 5.05e-82 253
Msa0995540 MtrunA17_Chr6g0465941 66.082 171 58 0 361 531 1 171 9.61e-78 242
Msa0995540 MtrunA17_Chr6g0466121 66.082 171 58 0 361 531 1 171 9.61e-78 242
Msa0995540 MtrunA17_Chr6g0465991 66.082 171 58 0 361 531 1 171 9.61e-78 242
Msa0995540 MtrunA17_Chr6g0466091 66.082 171 58 0 361 531 1 171 9.61e-78 242
Msa0995540 MtrunA17_Chr6g0465881 65.497 171 59 0 361 531 1 171 4.65e-77 240
Msa0995540 MtrunA17_Chr7g0237071 61.386 202 54 2 59 236 1 202 2.83e-75 237
Msa0995540 MtrunA17_Chr2g0319081 39.815 324 176 7 210 530 118 425 1.56e-74 242
Msa0995540 MtrunA17_Chr2g0319081 37.903 124 74 2 1 121 3 126 1.17e-20 94.7
Msa0995540 MtrunA17_Chr5g0445501 60.819 171 67 0 361 531 1 171 2.74e-72 228
Msa0995540 MtrunA17_Chr4g0048921 29.825 513 327 8 44 530 64 569 4.37e-70 234
Msa0995540 MtrunA17_Chr6g0466021 56.373 204 62 3 1 180 1 201 4.88e-69 220
Msa0995540 MtrunA17_Chr2g0310401 32.706 425 275 5 116 531 9 431 2.83e-68 226
Msa0995540 MtrunA17_Chr7g0236921 63.057 157 54 1 379 531 1 157 5.25e-68 216
Msa0995540 MtrunA17_Chr4g0048911 28.182 550 358 12 5 524 14 556 8.56e-67 226
Msa0995540 MtrunA17_Chr7g0236931 61.438 153 56 1 379 531 1 150 9.65e-64 204
Msa0995540 MtrunA17_Chr2g0280581 28.077 520 333 11 42 523 2 518 3.08e-62 213
Msa0995540 MtrunA17_Chr3g0109001 29.046 482 305 12 63 510 21 499 4.19e-57 199
Msa0995540 MtrunA17_Chr3g0108941 28.205 507 324 14 54 526 13 513 3.42e-56 196
Msa0995540 MtrunA17_Chr3g0109021 29.184 490 310 13 54 510 13 498 4.08e-56 196
Msa0995540 MtrunA17_Chr3g0109031 28.980 490 311 13 54 510 13 498 1.04e-55 195
Msa0995540 MtrunA17_Chr6g0477111 29.263 475 300 12 73 514 6 477 3.95e-55 193
Msa0995540 MtrunA17_Chr3g0108991 28.571 490 313 13 54 510 13 498 6.57e-54 190
Msa0995540 MtrunA17_Chr3g0108951 28.571 490 313 13 54 510 13 498 6.57e-54 190
Msa0995540 MtrunA17_Chr3g0105691 28.016 489 317 10 54 510 46 531 8.42e-54 191
Msa0995540 MtrunA17_Chr7g0233861 63.704 135 40 1 172 306 33 158 1.65e-52 176
Msa0995540 MtrunA17_Chr3g0108971 28.450 471 301 12 73 510 6 473 2.23e-52 185
Msa0995540 MtrunA17_Chr3g0108981 27.824 478 296 9 73 510 6 474 3.33e-52 185
Msa0995540 MtrunA17_Chr3g0108961 27.824 478 296 9 73 510 6 474 3.33e-52 185
Msa0995540 MtrunA17_Chr3g0099031 28.039 510 320 13 54 526 13 512 9.71e-52 184
Msa0995540 MtrunA17_Chr3g0109011 27.601 471 305 11 73 510 6 473 2.06e-51 182
Msa0995540 MtrunA17_Chr6g0477121 29.064 406 264 9 119 510 21 416 2.44e-51 181
Msa0995540 MtrunA17_Chr7g0217361 33.667 300 198 1 231 529 8 307 7.55e-51 176
Msa0995540 MtrunA17_Chr7g0236981 63.636 121 41 1 1 121 1 118 1.42e-47 162
Msa0995540 MtrunA17_Chr5g0445521 63.830 94 34 0 1 94 1 94 5.31e-36 129
Msa0995540 MtrunA17_Chr8g0357231 29.730 259 180 2 274 531 1 258 5.13e-34 129
Msa0995540 MtrunA17_Chr3g0082711 47.826 115 43 1 417 531 1 98 6.37e-32 118
Msa0995540 MtrunA17_Chr5g0445401 69.663 89 23 2 148 233 7 94 2.51e-30 114
Msa0995540 MtrunA17_Chr8g0357221 33.469 245 130 7 9 227 47 284 6.73e-30 119
Msa0995540 MtrunA17_Chr2g0310121 22.568 514 336 14 70 530 275 779 1.53e-25 111
Msa0995540 MtrunA17_Chr3g0101681 23.791 517 326 16 70 530 276 780 3.13e-25 110
Msa0995540 MtrunA17_Chr2g0281651 26.087 276 195 6 209 481 43 312 1.89e-19 90.9
Msa0995540 MtrunA17_Chr7g0259881 24.627 268 150 10 73 289 232 498 2.62e-12 69.7
Msa0995540 MtrunA17_Chr7g0218001 26.022 269 143 8 73 286 349 616 1.87e-11 67.0
Msa0995540 MtrunA17_Chr7g0217351 23.944 213 137 5 46 234 62 273 5.67e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0995540 AT5G23960.2 37.729 546 309 7 13 531 3 544 2.63e-133 398
Msa0995540 AT5G23960.1 37.774 548 308 8 13 531 3 546 1.62e-132 396
Msa0995540 AT1G70080.1 34.946 558 329 9 5 530 54 609 2.20e-109 339
Msa0995540 AT1G31950.1 34.879 539 319 6 22 531 70 605 4.09e-109 338
Msa0995540 AT3G14520.1 35.065 539 318 7 22 531 68 603 5.17e-109 338
Msa0995540 AT3G14490.1 35.897 546 314 9 17 531 60 600 9.60e-109 337
Msa0995540 AT1G31950.3 34.815 540 319 7 22 531 70 606 1.99e-108 336
Msa0995540 AT3G14540.1 35.250 539 317 6 22 531 65 600 2.58e-107 333
Msa0995540 AT3G32030.1 33.148 540 329 7 22 532 68 604 5.45e-103 322
Msa0995540 AT5G44630.1 33.274 562 336 9 1 530 1 555 5.44e-101 315
Msa0995540 AT1G33750.1 33.083 532 330 6 24 531 73 602 2.49e-99 312
Msa0995540 AT3G29410.1 32.781 543 333 8 17 531 64 602 2.52e-98 310
Msa0995540 AT4G13300.1 35.196 537 313 9 25 530 20 552 3.03e-98 308
Msa0995540 AT4G20210.1 32.418 546 332 9 17 530 58 598 1.18e-95 303
Msa0995540 AT4G20200.1 33.784 518 301 11 48 530 92 602 1.04e-94 300
Msa0995540 AT4G15870.1 32.310 554 325 11 9 530 61 596 1.63e-93 297
Msa0995540 AT3G29190.1 32.523 535 311 11 38 531 75 600 2.70e-93 297
Msa0995540 AT3G29410.2 32.800 500 306 6 59 531 1 497 2.78e-92 291
Msa0995540 AT4G13280.2 34.393 535 316 9 27 530 22 552 4.13e-92 292
Msa0995540 AT2G23230.2 32.234 546 331 10 16 527 55 595 3.58e-89 286
Msa0995540 AT1G31950.2 34.573 457 264 8 22 447 70 522 1.12e-88 283
Msa0995540 AT3G14540.2 35.426 446 257 5 22 439 65 507 1.13e-87 279
Msa0995540 AT2G23230.1 32.051 546 327 11 16 527 55 590 8.76e-87 280
Msa0995540 AT3G29110.1 32.418 546 332 11 17 530 55 595 5.53e-85 275
Msa0995540 AT4G20230.2 31.041 567 340 14 1 528 59 613 8.19e-85 275
Msa0995540 AT4G20230.1 31.041 567 340 14 1 528 47 601 9.01e-85 275
Msa0995540 AT4G16730.1 29.575 541 340 9 28 531 2 538 1.74e-84 272
Msa0995540 AT5G48110.1 37.353 340 208 5 192 530 2 337 8.63e-84 264
Msa0995540 AT1G66020.1 30.672 551 347 9 10 530 51 596 1.27e-81 266
Msa0995540 AT4G13280.1 33.271 535 292 11 27 530 22 522 5.24e-81 262
Msa0995540 AT4G16730.2 29.697 495 309 7 73 531 1 492 2.71e-80 259
Msa0995540 AT1G48820.1 30.857 525 317 11 17 525 63 557 9.41e-80 260
Msa0995540 AT4G16740.1 30.055 549 349 11 12 531 21 563 1.63e-78 257
Msa0995540 AT1G48800.1 29.121 546 347 11 17 528 63 602 6.94e-78 256
Msa0995540 AT3G25820.1 30.216 556 342 13 15 531 45 593 2.44e-77 255
Msa0995540 AT3G25830.1 30.216 556 342 13 15 531 45 593 2.44e-77 255
Msa0995540 AT2G24210.1 29.910 555 352 11 10 531 39 589 5.50e-77 254
Msa0995540 AT3G25810.1 29.947 561 340 14 15 531 45 596 6.03e-76 251
Msa0995540 AT1G61680.2 29.699 532 333 9 3 510 36 550 8.46e-74 244
Msa0995540 AT1G61680.1 29.499 539 332 9 3 510 36 557 3.02e-73 243
Msa0995540 AT4G16740.2 33.429 350 203 7 12 333 21 368 6.84e-59 201
Msa0995540 AT3G25820.2 30.990 384 226 9 15 365 45 422 7.93e-56 194
Msa0995540 AT1G66020.2 31.649 376 222 9 10 355 51 421 1.63e-52 184
Msa0995540 AT4G16740.4 33.127 323 186 7 12 306 21 341 6.94e-51 179
Msa0995540 AT4G16740.3 33.127 323 186 7 12 306 21 341 6.94e-51 179
Msa0995540 AT3G25820.4 32.000 325 182 9 15 306 45 363 1.08e-46 168
Msa0995540 AT3G25820.3 32.000 325 182 9 15 306 45 363 1.08e-46 168
Msa0995540 AT1G79460.1 21.663 517 336 19 70 530 274 777 4.49e-20 94.7
Msa0995540 AT1G61120.1 21.984 514 333 15 68 530 286 782 2.68e-18 89.4

Find 87 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTACGTTGGCAAAAT+TGG 0.135143 6_4:-71902221 Msa0995540:CDS
ATTCTATTTCTGTGCTATTT+AGG 0.140011 6_4:-71903164 Msa0995540:CDS
TTCTATTTCTGTGCTATTTA+GGG 0.183039 6_4:-71903163 Msa0995540:intron
CTGCTGTTCATTGCAGGCTT+AGG 0.250353 6_4:-71900692 Msa0995540:CDS
AGCCTACATCAAAAGGAATT+TGG 0.257080 6_4:-71902181 Msa0995540:CDS
ACGTAAGTAGAATTTCATTA+TGG 0.259315 6_4:+71902233 None:intergenic
TCCGTATGCTTCAGAATCTT+TGG 0.269105 6_4:-71903895 Msa0995540:intron
GTCATCAATGTATGATAAAA+TGG 0.271835 6_4:+71901911 None:intergenic
CAGATTTCCACCCTAGCGTT+TGG 0.305039 6_4:-71903932 Msa0995540:CDS
ATGTTGCTGCTGTTCATTGC+AGG 0.315313 6_4:-71900698 Msa0995540:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.318717 6_4:-71903931 Msa0995540:CDS
AGACGAAATTAATCAAGTTT+TGG 0.321368 6_4:-71903244 Msa0995540:CDS
TAGTTGTTTGGATGATCTTC+CGG 0.341349 6_4:-71901564 Msa0995540:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6_4:-71901998 Msa0995540:CDS
TTATATGAGGGAATATGATA+TGG 0.360767 6_4:-71900341 Msa0995540:CDS
TGCTGTTCATTGCAGGCTTA+GGG 0.367426 6_4:-71900691 Msa0995540:CDS
CCAATTGAAGATATCATTTG+TGG 0.372281 6_4:+71900746 None:intergenic
TTCATGTACTCCTCTGTTGT+TGG 0.374525 6_4:+71900837 None:intergenic
CCACAAATGATATCTTCAAT+TGG 0.377027 6_4:-71900746 Msa0995540:CDS
CGTAAGTAGAATTTCATTAT+GGG 0.378944 6_4:+71902234 None:intergenic
AAACGTAATGGAACTTTAGT+TGG 0.382677 6_4:+71900241 None:intergenic
TAGGTGGGATATTAGTTGTT+TGG 0.387739 6_4:-71901576 Msa0995540:CDS
CGTACTTGGAATGTTATATG+AGG 0.388936 6_4:-71900354 Msa0995540:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6_4:+71902255 None:intergenic
GATTGACTCAATATGTCGTT+TGG 0.390339 6_4:-71903286 Msa0995540:CDS
AGGACATGTTGCTTCGTACT+TGG 0.399435 6_4:-71900368 Msa0995540:CDS
ATATAAATGAGGAATGTCTT+AGG 0.410838 6_4:-71900264 Msa0995540:CDS
TCGCAAGAGAAGGACTCAAT+TGG 0.412353 6_4:+71902350 None:intergenic
TAGAGAAACTTCATGTAATC+CGG 0.427919 6_4:+71901545 None:intergenic
AAAAGAAAATTGACAATGCT+TGG 0.431364 6_4:-71900291 Msa0995540:CDS
GTTTCTCTATAAACCACTCT+TGG 0.439981 6_4:-71901531 Msa0995540:CDS
GTAGGTCTTCATTAGTCCTT+CGG 0.442180 6_4:+71900147 None:intergenic
GCTCCAAAGCCTACATCAAA+AGG 0.450495 6_4:-71902188 Msa0995540:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6_4:-71900778 Msa0995540:CDS
CACAAATGATATCTTCAATT+GGG 0.456797 6_4:-71900745 Msa0995540:CDS
ACTACTCTGTCCCGTGCATA+AGG 0.457542 6_4:+71902014 None:intergenic
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_4:-71900777 Msa0995540:CDS
TTCCTTGCTTGACAATATTG+AGG 0.465049 6_4:+71901954 None:intergenic
GCCTCACATATGATGATTCA+TGG 0.465433 6_4:-71902433 Msa0995540:intron
ATTGACTCAATATGTCGTTT+GGG 0.473862 6_4:-71903285 Msa0995540:CDS
ACCAAAATCAATGCTCATGT+TGG 0.476318 6_4:+71900097 None:intergenic
GAGCAAGAAGTGAAGAAAGA+AGG 0.477567 6_4:-71901491 Msa0995540:CDS
CGCAAGAGAAGGACTCAATT+GGG 0.484801 6_4:+71902351 None:intergenic
CCAAAATCAATGCTCATGTT+GGG 0.485248 6_4:+71900098 None:intergenic
AACATTGATCATAGATGTTG+AGG 0.512550 6_4:-71902476 Msa0995540:CDS
AAGAAGTCGTAGCCAACATC+GGG 0.522387 6_4:+71900790 None:intergenic
ATCAATGCTCATGTTGGGAT+GGG 0.522554 6_4:+71900103 None:intergenic
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6_4:-71902054 Msa0995540:intron
AGCCTCAATATTGTCAAGCA+AGG 0.528176 6_4:-71901956 Msa0995540:CDS
AATCAATGCTCATGTTGGGA+TGG 0.533171 6_4:+71900102 None:intergenic
TGGCCTCACTCATGTAAGCT+TGG 0.536408 6_4:+71900883 None:intergenic
GATTTCCACCCTAGCGTTTG+GGG 0.542721 6_4:-71903930 Msa0995540:CDS
TTGTCAAGCAAGGAAAATGA+TGG 0.545763 6_4:-71901946 Msa0995540:CDS
GCAAATTGATAAACTAAAAG+AGG 0.546970 6_4:-71903364 Msa0995540:CDS
TAGCTTCTTGCCTCTAGCCT+AGG 0.554871 6_4:+71902283 None:intergenic
TTGGCTACGACTTCTTACAT+TGG 0.558699 6_4:-71900783 Msa0995540:CDS
TTGACTTGTGTCGCAAGAGA+AGG 0.560387 6_4:+71902340 None:intergenic
ATCAAGTGGTTACCCGATGT+TGG 0.563482 6_4:-71900802 Msa0995540:CDS
GGAATTTGATATAAATATTG+CGG 0.567112 6_4:-71903388 Msa0995540:CDS
GTACTTGGAATGTTATATGA+GGG 0.567173 6_4:-71900353 Msa0995540:CDS
CTTGCGACACAAGTCAAACA+TGG 0.567322 6_4:-71902334 Msa0995540:CDS
GACGAGCAAATCATTAATGT+AGG 0.569159 6_4:+71900129 None:intergenic
AATGGAGAAATAACTCTCAA+AGG 0.571243 6_4:-71903195 Msa0995540:CDS
AAGCTTACATGAGTGAGGCC+AGG 0.576657 6_4:-71900881 Msa0995540:CDS
ATAGCACAGAAATAGAATGA+AGG 0.580450 6_4:+71903169 None:intergenic
GATGACACGTATGATGCATA+CGG 0.587584 6_4:-71901894 Msa0995540:CDS
TAAGAAGTCGTAGCCAACAT+CGG 0.591735 6_4:+71900789 None:intergenic
ACCAAAGATTCTGAAGCATA+CGG 0.593001 6_4:+71903894 None:intergenic
ATTGGGTTGCAATTGACTCA+AGG 0.594526 6_4:+71902368 None:intergenic
AACACATCAACAATATCAAG+TGG 0.595383 6_4:-71900816 Msa0995540:CDS
TCTTCATAAACATCCAAGAG+TGG 0.597368 6_4:+71901518 None:intergenic
ACATTGATCATAGATGTTGA+GGG 0.599537 6_4:-71902475 Msa0995540:CDS
TTTCCACCCTAGCGTTTGGG+GGG 0.604138 6_4:-71903928 Msa0995540:CDS
TAATGAAATTCTACTTACGT+TGG 0.604203 6_4:-71902230 Msa0995540:CDS
AACCAATTCAAGGACAAGCA+AGG 0.604565 6_4:-71902511 Msa0995540:intron
CTTTATATATAGGTGGTGGA+AGG 0.614852 6_4:-71902060 Msa0995540:intron
ATTTCCACCCTAGCGTTTGG+GGG 0.619288 6_4:-71903929 Msa0995540:CDS
AAACCTCAATAAAACGCGAA+AGG 0.623927 6_4:+71900200 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 6_4:-71900275 Msa0995540:CDS
ACCATGAATCATCATATGTG+AGG 0.641340 6_4:+71902432 None:intergenic
AATTGATAAACTAAAAGAGG+AGG 0.642973 6_4:-71903361 Msa0995540:CDS
ATAGTTAACATTCAACCACC+TGG 0.654774 6_4:+71900863 None:intergenic
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6_4:-71900670 Msa0995540:intron
AGTCCAAGCTTACATGAGTG+AGG 0.665674 6_4:-71900886 Msa0995540:CDS
GATAACTACACACATTCCGA+AGG 0.666041 6_4:-71900163 Msa0995540:CDS
CTTACATGAGTGAGGCCAGG+TGG 0.678940 6_4:-71900878 Msa0995540:CDS
TAACTATATACCAACAACAG+AGG 0.706002 6_4:-71900847 Msa0995540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAATATATATATTACA+AGG + chr6_4:71900585-71900604 None:intergenic 10.0%
!!! ATTATATTTTTGATATCATT+AGG - chr6_4:71901367-71901386 Msa0995540:intron 10.0%
!!! ATTTAATTTTAAATTAAGGA+GGG + chr6_4:71901976-71901995 None:intergenic 10.0%
!!! AATTTAATTTTAAATTAAGG+AGG + chr6_4:71901977-71901996 None:intergenic 10.0%
!!! TTTTATCATATATTTATACA+CGG - chr6_4:71902449-71902468 Msa0995540:CDS 10.0%
!!! TTATAATGAAAATGAATTTT+AGG - chr6_4:71902506-71902525 Msa0995540:intron 10.0%
!! TATTATATTAAATCTTAAGA+CGG + chr6_4:71903594-71903613 None:intergenic 10.0%
!! GAATCATTAATATAAATAAG+TGG + chr6_4:71901009-71901028 None:intergenic 15.0%
!!! TAATTTTTTAACTTTGATCA+TGG - chr6_4:71901143-71901162 Msa0995540:intron 15.0%
!!! AATTTTTTAACTTTGATCAT+GGG - chr6_4:71901144-71901163 Msa0995540:intron 15.0%
!!! TAATATAAACCTCTAAAAAA+TGG - chr6_4:71901174-71901193 Msa0995540:intron 15.0%
!! ATAAAGACCAAAAATATTAT+AGG + chr6_4:71902027-71902046 None:intergenic 15.0%
!!! TATTTTTGGTCTTTATATAT+AGG - chr6_4:71902031-71902050 Msa0995540:CDS 15.0%
!!! ATTAAATAATAACTTTTAGG+TGG - chr6_4:71902387-71902406 Msa0995540:CDS 15.0%
!!! TGTTATCAGAATAAAATTTT+AGG - chr6_4:71902758-71902777 Msa0995540:intron 15.0%
!! CATATTTACAAAAAATACAT+AGG - chr6_4:71903128-71903147 Msa0995540:intron 15.0%
!! AATATAGTAGAATTGTTAAT+AGG + chr6_4:71903169-71903188 None:intergenic 15.0%
!! AATATAATAAGATGACATAA+TGG - chr6_4:71903605-71903624 Msa0995540:intron 15.0%
!! TATGTTATGAAAAGTGATTA+AGG - chr6_4:71900296-71900315 Msa0995540:CDS 20.0%
!!! ACACTTAATTGTTATTTGAA+AGG + chr6_4:71900645-71900664 None:intergenic 20.0%
!! GGAATTTGATATAAATATTG+CGG - chr6_4:71900713-71900732 Msa0995540:CDS 20.0%
!!! ATTTTTTAACTTTGATCATG+GGG - chr6_4:71901145-71901164 Msa0995540:intron 20.0%
!!! ATACTTAAACCATTTTTTAG+AGG + chr6_4:71901186-71901205 None:intergenic 20.0%
!!! TATTTAACTTTTTCTTGCAT+AGG - chr6_4:71901270-71901289 Msa0995540:intron 20.0%
!! AATTAAGATAATGTATAGTG+TGG + chr6_4:71901451-71901470 None:intergenic 20.0%
!!! CTAATTGCCTATAATATTTT+TGG - chr6_4:71902017-71902036 Msa0995540:CDS 20.0%
!!! GTTTTTCTATCTCTAAATTT+TGG + chr6_4:71902322-71902341 None:intergenic 20.0%
!!! TAATGAAAATGAATTTTAGG+TGG - chr6_4:71902509-71902528 Msa0995540:intron 20.0%
!!! AATGAAAATGAATTTTAGGT+GGG - chr6_4:71902510-71902529 Msa0995540:intron 20.0%
!!! TTGTGATTAGAACATTTTTA+GGG - chr6_4:71902834-71902853 Msa0995540:intron 20.0%
!!! TTTTGTTGAACTATTATCTA+CGG + chr6_4:71903088-71903107 None:intergenic 20.0%
!!! ATTGTTCATTTTTGTAAACA+AGG - chr6_4:71903521-71903540 Msa0995540:intron 20.0%
! GAATAAAACCAAGAGAAAAT+AGG - chr6_4:71900356-71900375 Msa0995540:CDS 25.0%
! GCAATGTTAGTAATATTAAG+TGG + chr6_4:71900529-71900548 None:intergenic 25.0%
! TTCAAGAATGCCAATAATAT+AGG - chr6_4:71900600-71900619 Msa0995540:intron 25.0%
! GTCAAAAGATCCTATATTAT+TGG + chr6_4:71900613-71900632 None:intergenic 25.0%
! GCAAATTGATAAACTAAAAG+AGG - chr6_4:71900737-71900756 Msa0995540:CDS 25.0%
! AATTGATAAACTAAAAGAGG+AGG - chr6_4:71900740-71900759 Msa0995540:CDS 25.0%
!!! ATCAAGTTGACTTTTTTCAA+CGG + chr6_4:71900798-71900817 None:intergenic 25.0%
!! AGACGAAATTAATCAAGTTT+TGG - chr6_4:71900857-71900876 Msa0995540:CDS 25.0%
!!! ATTCTATTTCTGTGCTATTT+AGG - chr6_4:71900937-71900956 Msa0995540:intron 25.0%
!!! TTCTATTTCTGTGCTATTTA+GGG - chr6_4:71900938-71900957 Msa0995540:intron 25.0%
! CGTTGTTACTAAAAATGTAA+AGG + chr6_4:71901212-71901231 None:intergenic 25.0%
!!! TATTTTTGATATCATTAGGC+CGG - chr6_4:71901371-71901390 Msa0995540:intron 25.0%
! CGTAAGTAGAATTTCATTAT+GGG + chr6_4:71901870-71901889 None:intergenic 25.0%
! ACGTAAGTAGAATTTCATTA+TGG + chr6_4:71901871-71901890 None:intergenic 25.0%
! TAATGAAATTCTACTTACGT+TGG - chr6_4:71901871-71901890 Msa0995540:CDS 25.0%
!!! TTTTGGTCTTTATATATAGG+TGG - chr6_4:71902034-71902053 Msa0995540:CDS 25.0%
! GTCATCAATGTATGATAAAA+TGG + chr6_4:71902193-71902212 None:intergenic 25.0%
!! TGAGTTAGAACTTTTTACTA+AGG - chr6_4:71902239-71902258 Msa0995540:CDS 25.0%
!! TTTTTACTAAGGCAATTGAA+AGG - chr6_4:71902250-71902269 Msa0995540:CDS 25.0%
!!! TTCTTTTAAGAAGTGGTTAA+TGG + chr6_4:71902647-71902666 None:intergenic 25.0%
! GATCTATGTATGTATCTATA+CGG + chr6_4:71902804-71902823 None:intergenic 25.0%
!! CTTGTGATTAGAACATTTTT+AGG - chr6_4:71902833-71902852 Msa0995540:intron 25.0%
!!! TGTGATTAGAACATTTTTAG+GGG - chr6_4:71902835-71902854 Msa0995540:intron 25.0%
! CACAAATGATATCTTCAATT+GGG - chr6_4:71903356-71903375 Msa0995540:CDS 25.0%
! ATTTCACACAATATTCTTTG+TGG - chr6_4:71903478-71903497 Msa0995540:intron 25.0%
! TTATATGAGGGAATATGATA+TGG - chr6_4:71903760-71903779 Msa0995540:intron 25.0%
!! TTTCTTTTGGTATTCTTGAA+TGG + chr6_4:71903798-71903817 None:intergenic 25.0%
!!! AAGCATTGTCAATTTTCTTT+TGG + chr6_4:71903811-71903830 None:intergenic 25.0%
! AAAAGAAAATTGACAATGCT+TGG - chr6_4:71903810-71903829 Msa0995540:intron 25.0%
! ATATAAATGAGGAATGTCTT+AGG - chr6_4:71903837-71903856 Msa0995540:intron 25.0%
! GTTGGTTATTTGTTAGCAAT+AGG - chr6_4:71900405-71900424 Msa0995540:intron 30.0%
TTAATTATACGATCCAAGTG+TGG + chr6_4:71900502-71900521 None:intergenic 30.0%
!!! TGCATGTTTTGATTACATAC+AGG - chr6_4:71900692-71900711 Msa0995540:CDS 30.0%
! ATTGACTCAATATGTCGTTT+GGG - chr6_4:71900816-71900835 Msa0995540:CDS 30.0%
! CATTTTGAACAAAATCCTTG+TGG + chr6_4:71900890-71900909 None:intergenic 30.0%
! CACAAGGATTTTGTTCAAAA+TGG - chr6_4:71900888-71900907 Msa0995540:CDS 30.0%
AATGGAGAAATAACTCTCAA+AGG - chr6_4:71900906-71900925 Msa0995540:intron 30.0%
ATAGCACAGAAATAGAATGA+AGG + chr6_4:71900935-71900954 None:intergenic 30.0%
TAAGTGGAGATATAAATACC+AGG + chr6_4:71900993-71901012 None:intergenic 30.0%
TTGAGTAAAACAAACTTGTG+TGG - chr6_4:71901057-71901076 Msa0995540:intron 30.0%
!! AACTTTTTCTTGCATAGGAT+CGG - chr6_4:71901275-71901294 Msa0995540:intron 30.0%
!! GGATAATGGGTTGTTTAATA+TGG + chr6_4:71901303-71901322 None:intergenic 30.0%
GATAACATTACACGGATAAT+GGG + chr6_4:71901316-71901335 None:intergenic 30.0%
AAGGTTCTTCCTTAATAAGA+TGG + chr6_4:71901413-71901432 None:intergenic 30.0%
AGATGTATTCAACCAATTCA+AGG - chr6_4:71901580-71901599 Msa0995540:intron 30.0%
AACATTGATCATAGATGTTG+AGG - chr6_4:71901625-71901644 Msa0995540:intron 30.0%
ACATTGATCATAGATGTTGA+GGG - chr6_4:71901626-71901645 Msa0995540:intron 30.0%
! GATTCATGGTGAGAAAATTT+TGG - chr6_4:71901682-71901701 Msa0995540:intron 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6_4:71901925-71901944 None:intergenic 30.0%
! ATTTTAAATTAAGGAGGGTG+TGG + chr6_4:71901971-71901990 None:intergenic 30.0%
CTAAAAAACTACCTTATGCA+CGG - chr6_4:71902076-71902095 Msa0995540:intron 30.0%
TAAAAAACTACCTTATGCAC+GGG - chr6_4:71902077-71902096 Msa0995540:intron 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6_4:71902104-71902123 Msa0995540:intron 30.0%
TAGAGAAACTTCATGTAATC+CGG + chr6_4:71902559-71902578 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+TGG + chr6_4:71902654-71902673 None:intergenic 30.0%
! TTCTAATCACAAGATTTGCT+AGG + chr6_4:71902826-71902845 None:intergenic 30.0%
CAAAAAATACATAGGAGTTC+AGG - chr6_4:71903136-71903155 Msa0995540:intron 30.0%
TAACTATATACCAACAACAG+AGG - chr6_4:71903254-71903273 Msa0995540:CDS 30.0%
AACACATCAACAATATCAAG+TGG - chr6_4:71903285-71903304 Msa0995540:CDS 30.0%
CCAATTGAAGATATCATTTG+TGG + chr6_4:71903358-71903377 None:intergenic 30.0%
CCACAAATGATATCTTCAAT+TGG - chr6_4:71903355-71903374 Msa0995540:CDS 30.0%
! GCAGCAACATTAACAATTTT+CGG + chr6_4:71903393-71903412 None:intergenic 30.0%
GTACTTGGAATGTTATATGA+GGG - chr6_4:71903748-71903767 Msa0995540:intron 30.0%
TGCTTGGAAAGATATAAATG+AGG - chr6_4:71903826-71903845 Msa0995540:intron 30.0%
! AAACGTAATGGAACTTTAGT+TGG + chr6_4:71903863-71903882 None:intergenic 30.0%
!! ACCAAAGATTCTGAAGCATA+CGG + chr6_4:71900210-71900229 None:intergenic 35.0%
!! TAGCTCTACCTATTTTCTCT+TGG + chr6_4:71900367-71900386 None:intergenic 35.0%
CTAACAAATAACCAACCCTT+TGG + chr6_4:71900401-71900420 None:intergenic 35.0%
TTAGCAATAGGAATGAAACC+TGG - chr6_4:71900417-71900436 Msa0995540:intron 35.0%
! GTAACAATATCCTTTTCCGT+CGG + chr6_4:71900465-71900484 None:intergenic 35.0%
! GATTGACTCAATATGTCGTT+TGG - chr6_4:71900815-71900834 Msa0995540:CDS 35.0%
!!! AGTTTTGGAAGATATCCACA+AGG - chr6_4:71900872-71900891 Msa0995540:CDS 35.0%
GGATAACATTACACGGATAA+TGG + chr6_4:71901317-71901336 None:intergenic 35.0%
TATCCGTGTAATGTTATCCT+CGG - chr6_4:71901318-71901337 Msa0995540:intron 35.0%
TAATAAGATGGCTACCCTAT+AGG + chr6_4:71901401-71901420 None:intergenic 35.0%
ATAGGGTAGCCATCTTATTA+AGG - chr6_4:71901401-71901420 Msa0995540:intron 35.0%
!! GTGGTTCTAGAGTATGAAAA+AGG + chr6_4:71901432-71901451 None:intergenic 35.0%
ATGATTGTTCAACATTGTCG+TGG - chr6_4:71901539-71901558 Msa0995540:CDS 35.0%
ACCATGAATCATCATATGTG+AGG + chr6_4:71901672-71901691 None:intergenic 35.0%
!! TGGTGAGAAAATTTTGGAAG+AGG - chr6_4:71901688-71901707 Msa0995540:intron 35.0%
TCTACTTACGTTGGCAAAAT+TGG - chr6_4:71901880-71901899 Msa0995540:CDS 35.0%
! ATTCCTTTTGATGTAGGCTT+TGG + chr6_4:71901919-71901938 None:intergenic 35.0%
AGCCTACATCAAAAGGAATT+TGG - chr6_4:71901920-71901939 Msa0995540:CDS 35.0%
TGGTCTTTATATATAGGTGG+TGG - chr6_4:71902037-71902056 Msa0995540:CDS 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6_4:71902041-71902060 Msa0995540:CDS 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6_4:71902103-71902122 Msa0995540:intron 35.0%
!!! ATGTTGCTTTTGGGTTATGA+CGG - chr6_4:71902113-71902132 Msa0995540:intron 35.0%
TTCCTTGCTTGACAATATTG+AGG + chr6_4:71902150-71902169 None:intergenic 35.0%
TTGTCAAGCAAGGAAAATGA+TGG - chr6_4:71902155-71902174 Msa0995540:intron 35.0%
TAGGTGGGATATTAGTTGTT+TGG - chr6_4:71902525-71902544 Msa0995540:intron 35.0%
TAGTTGTTTGGATGATCTTC+CGG - chr6_4:71902537-71902556 Msa0995540:intron 35.0%
GTTTCTCTATAAACCACTCT+TGG - chr6_4:71902570-71902589 Msa0995540:intron 35.0%
TCTTCATAAACATCCAAGAG+TGG + chr6_4:71902586-71902605 None:intergenic 35.0%
ATAGTTAACATTCAACCACC+TGG + chr6_4:71903241-71903260 None:intergenic 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_4:71903323-71903342 Msa0995540:CDS 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_4:71903324-71903343 Msa0995540:CDS 35.0%
AAACAGTTCGAGCAAAAAAG+AGG - chr6_4:71903713-71903732 Msa0995540:intron 35.0%
CGTACTTGGAATGTTATATG+AGG - chr6_4:71903747-71903766 Msa0995540:intron 35.0%
ACACACGTCAAAAAACGTAA+TGG + chr6_4:71903875-71903894 None:intergenic 35.0%
AAACCTCAATAAAACGCGAA+AGG + chr6_4:71903904-71903923 None:intergenic 35.0%
GACGAGCAAATCATTAATGT+AGG + chr6_4:71903975-71903994 None:intergenic 35.0%
TCCGTATGCTTCAGAATCTT+TGG - chr6_4:71900206-71900225 Msa0995540:CDS 40.0%
AGCTATAGCAAACTCTCCAA+AGG - chr6_4:71900382-71900401 Msa0995540:CDS 40.0%
GCTATAGCAAACTCTCCAAA+GGG - chr6_4:71900383-71900402 Msa0995540:CDS 40.0%
! GGAATGAAACCTGGTGTTTT+AGG - chr6_4:71900426-71900445 Msa0995540:intron 40.0%
GTTGGAAATCCTAAAACACC+AGG + chr6_4:71900438-71900457 None:intergenic 40.0%
AGGATTTCCAACATTTCCGA+CGG - chr6_4:71900446-71900465 Msa0995540:intron 40.0%
TTATACGATCCAAGTGTGGT+TGG + chr6_4:71900498-71900517 None:intergenic 40.0%
ACTAACATTGCACACTCCAA+AGG - chr6_4:71900538-71900557 Msa0995540:intron 40.0%
CTAACATTGCACACTCCAAA+GGG - chr6_4:71900539-71900558 Msa0995540:intron 40.0%
GTGAGTAACTTGAATCCCTT+TGG + chr6_4:71900557-71900576 None:intergenic 40.0%
GAACCGAGGATAACATTACA+CGG + chr6_4:71901324-71901343 None:intergenic 40.0%
GCGAATAATGTAAAGAACCG+AGG + chr6_4:71901338-71901357 None:intergenic 40.0%
! ATTAGGCCGGTTTACCTATA+GGG - chr6_4:71901384-71901403 Msa0995540:intron 40.0%
AACCAATTCAAGGACAAGCA+AGG - chr6_4:71901590-71901609 Msa0995540:intron 40.0%
TTCCTTGCTTGTCCTTGAAT+TGG + chr6_4:71901595-71901614 None:intergenic 40.0%
GCCTCACATATGATGATTCA+TGG - chr6_4:71901668-71901687 Msa0995540:intron 40.0%
!! GAAAATTTTGGAAGAGGCGT+TGG - chr6_4:71901694-71901713 Msa0995540:intron 40.0%
! ATTGGGTTGCAATTGACTCA+AGG + chr6_4:71901736-71901755 None:intergenic 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6_4:71901849-71901868 None:intergenic 40.0%
AGCCTCAATATTGTCAAGCA+AGG - chr6_4:71902145-71902164 Msa0995540:intron 40.0%
GATGACACGTATGATGCATA+CGG - chr6_4:71902207-71902226 Msa0995540:CDS 40.0%
GAGCAAGAAGTGAAGAAAGA+AGG - chr6_4:71902610-71902629 Msa0995540:intron 40.0%
GTATGTATCTATACGGAGAG+TGG + chr6_4:71902797-71902816 None:intergenic 40.0%
TTCATGTACTCCTCTGTTGT+TGG + chr6_4:71903267-71903286 None:intergenic 40.0%
TAAGAAGTCGTAGCCAACAT+CGG + chr6_4:71903315-71903334 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_4:71903318-71903337 Msa0995540:CDS 40.0%
!! CAACCTTTCGCGTTTTATTG+AGG - chr6_4:71903898-71903917 Msa0995540:CDS 40.0%
GATAACTACACACATTCCGA+AGG - chr6_4:71903938-71903957 Msa0995540:CDS 40.0%
GTAGGTCTTCATTAGTCCTT+CGG + chr6_4:71903957-71903976 None:intergenic 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6_4:71900170-71900189 Msa0995540:CDS 45.0%
TAGCAAACTCTCCAAAGGGT+TGG - chr6_4:71900387-71900406 Msa0995540:intron 45.0%
TCCAACATTTCCGACGGAAA+AGG - chr6_4:71900452-71900471 Msa0995540:intron 45.0%
! TCCTTTTCCGTCGGAAATGT+TGG + chr6_4:71900456-71900475 None:intergenic 45.0%
CATTGCAAACCAACCACACT+TGG - chr6_4:71900486-71900505 Msa0995540:intron 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6_4:71900946-71900965 Msa0995540:intron 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6_4:71900954-71900973 Msa0995540:intron 45.0%
GTTGAGGCAACATGGTCTTT+AGG - chr6_4:71900962-71900981 Msa0995540:intron 45.0%
! CATGGTCTTTAGGTTTCACC+TGG - chr6_4:71900972-71900991 Msa0995540:intron 45.0%
! CATTAGGCCGGTTTACCTAT+AGG - chr6_4:71901383-71901402 Msa0995540:intron 45.0%
TGGCTACCCTATAGGTAAAC+CGG + chr6_4:71901393-71901412 None:intergenic 45.0%
CGCAAGAGAAGGACTCAATT+GGG + chr6_4:71901753-71901772 None:intergenic 45.0%
TCGCAAGAGAAGGACTCAAT+TGG + chr6_4:71901754-71901773 None:intergenic 45.0%
!! TTGACTTGTGTCGCAAGAGA+AGG + chr6_4:71901764-71901783 None:intergenic 45.0%
CTTGCGACACAAGTCAAACA+TGG - chr6_4:71901767-71901786 Msa0995540:intron 45.0%
CAAAAACTTGCCTAGGCTAG+AGG - chr6_4:71901808-71901827 Msa0995540:intron 45.0%
GCTCCAAAGCCTACATCAAA+AGG - chr6_4:71901913-71901932 Msa0995540:CDS 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6_4:71902047-71902066 Msa0995540:CDS 45.0%
AGTCCAAGCTTACATGAGTG+AGG - chr6_4:71903215-71903234 Msa0995540:CDS 45.0%
ATCAAGTGGTTACCCGATGT+TGG - chr6_4:71903299-71903318 Msa0995540:CDS 45.0%
AAGAAGTCGTAGCCAACATC+GGG + chr6_4:71903314-71903333 None:intergenic 45.0%
ATGTTGCTGCTGTTCATTGC+AGG - chr6_4:71903403-71903422 Msa0995540:intron 45.0%
TGCTGTTCATTGCAGGCTTA+GGG - chr6_4:71903410-71903429 Msa0995540:intron 45.0%
GGATGAAATTGTGTCTAGCG+AGG - chr6_4:71903431-71903450 Msa0995540:intron 45.0%
! AGGACATGTTGCTTCGTACT+TGG - chr6_4:71903733-71903752 Msa0995540:intron 45.0%
!!! TCATTTTTTATATTTTAATT+TGG - chr6_4:71901027-71901046 Msa0995540:intron 5.0%
!!! TTCAATTTAATTTTAAATTA+AGG + chr6_4:71901980-71901999 None:intergenic 5.0%
!!! AAAATTAAATAATAACTTTT+AGG - chr6_4:71902384-71902403 Msa0995540:CDS 5.0%
!! TTTAAAAAAAGATTATATAT+TGG - chr6_4:71903050-71903069 Msa0995540:intron 5.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6_4:71900169-71900188 Msa0995540:CDS 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6_4:71900171-71900190 Msa0995540:CDS 50.0%
ATTTCCACCCTAGCGTTTGG+GGG - chr6_4:71900172-71900191 Msa0995540:CDS 50.0%
!!! GAGGCGTTGGCTTTTACTTC+TGG - chr6_4:71901707-71901726 Msa0995540:intron 50.0%
! CTAGGCAAGTTTTTGCGCAG+AGG + chr6_4:71901803-71901822 None:intergenic 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6_4:71901801-71901820 Msa0995540:intron 50.0%
TAGCTTCTTGCCTCTAGCCT+AGG + chr6_4:71901821-71901840 None:intergenic 50.0%
ACTACTCTGTCCCGTGCATA+AGG + chr6_4:71902090-71902109 None:intergenic 50.0%
TGGCCTCACTCATGTAAGCT+TGG + chr6_4:71903221-71903240 None:intergenic 50.0%
AAGCTTACATGAGTGAGGCC+AGG - chr6_4:71903220-71903239 Msa0995540:CDS 50.0%
CTGCTGTTCATTGCAGGCTT+AGG - chr6_4:71903409-71903428 Msa0995540:intron 50.0%
TTTCCACCCTAGCGTTTGGG+GGG - chr6_4:71900173-71900192 Msa0995540:CDS 55.0%
AGAAGTCCCCCCAAACGCTA+GGG + chr6_4:71900182-71900201 None:intergenic 55.0%
AAGAAGTCCCCCCAAACGCT+AGG + chr6_4:71900183-71900202 None:intergenic 55.0%
CTTACATGAGTGAGGCCAGG+TGG - chr6_4:71903223-71903242 Msa0995540:CDS 55.0%
AGTCCCCCCAAACGCTAGGG+TGG + chr6_4:71900179-71900198 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 71900111 71904012 71900111 ID=Msa0995540;Name=Msa0995540
chr6_4 mRNA 71900111 71904012 71900111 ID=Msa0995540-mRNA-1;Parent=Msa0995540;Name=Msa0995540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.71|0.62|8|0|532
chr6_4 exon 71903896 71904012 71903896 ID=Msa0995540-mRNA-1:exon:13442;Parent=Msa0995540-mRNA-1
chr6_4 exon 71903164 71903409 71903164 ID=Msa0995540-mRNA-1:exon:13441;Parent=Msa0995540-mRNA-1
chr6_4 exon 71902434 71902521 71902434 ID=Msa0995540-mRNA-1:exon:13440;Parent=Msa0995540-mRNA-1
chr6_4 exon 71902169 71902415 71902169 ID=Msa0995540-mRNA-1:exon:13439;Parent=Msa0995540-mRNA-1
chr6_4 exon 71901852 71902070 71901852 ID=Msa0995540-mRNA-1:exon:13438;Parent=Msa0995540-mRNA-1
chr6_4 exon 71901457 71901595 71901457 ID=Msa0995540-mRNA-1:exon:13437;Parent=Msa0995540-mRNA-1
chr6_4 exon 71900671 71900919 71900671 ID=Msa0995540-mRNA-1:exon:13436;Parent=Msa0995540-mRNA-1
chr6_4 exon 71900111 71900404 71900111 ID=Msa0995540-mRNA-1:exon:13435;Parent=Msa0995540-mRNA-1
chr6_4 CDS 71903896 71904012 71903896 ID=Msa0995540-mRNA-1:cds;Parent=Msa0995540-mRNA-1
chr6_4 CDS 71903164 71903409 71903164 ID=Msa0995540-mRNA-1:cds;Parent=Msa0995540-mRNA-1
chr6_4 CDS 71902434 71902521 71902434 ID=Msa0995540-mRNA-1:cds;Parent=Msa0995540-mRNA-1
chr6_4 CDS 71902169 71902415 71902169 ID=Msa0995540-mRNA-1:cds;Parent=Msa0995540-mRNA-1
chr6_4 CDS 71901852 71902070 71901852 ID=Msa0995540-mRNA-1:cds;Parent=Msa0995540-mRNA-1
chr6_4 CDS 71901457 71901595 71901457 ID=Msa0995540-mRNA-1:cds;Parent=Msa0995540-mRNA-1
chr6_4 CDS 71900671 71900919 71900671 ID=Msa0995540-mRNA-1:cds;Parent=Msa0995540-mRNA-1
chr6_4 CDS 71900111 71900404 71900111 ID=Msa0995540-mRNA-1:cds;Parent=Msa0995540-mRNA-1
Gene Sequence

>Msa0995540

ATGTCTGCAGTAGCTAGCTTCAATCATGACGAGAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGAATTTGATATAAATATTGCGGCGCAAATTGATAAACTAAAAGAGGAGGTTAGACAAATGCTTGTCTCAAAAATTGAGAATCCGTTGAAAAAAGTCAACTTGATTGACTCAATATGTCGTTTGGGTGTGAGCTATTATTTTGAAGACGAAATTAATCAAGTTTTGGAAGATATCCACAAGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGCAACCTTCATTCTATTTCTGTGCTATTTAGGGACAAGCAAGGAAATTTTAGTGAAACATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGATTCATGAGGCGTTGGCTTTTACTTCTGGTCACCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGACACAAGTCAAACATGGCTTAAGACATCCTCTGCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAGGAATTTGGAAACATTTGCAAGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAATGATGGCAAAAGTAATCTCCATTTTATCATACATTGATGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGCAATTGAAAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATTGAGCAAGAAGTGAAGAAAGAAGGAAGAGTATATGCCATTAACCACTTCTTAAAAGAATTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAACTATATACCAACAACAGAGGAGTACATGAACACATCAACAATATCAAGTGGTTACCCGATGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCCACAAATGATATCTTCAATTGGGTAACTAGTCATCCGAAAATTGTTAATGTTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCGAGTTCGAGCAAAAAAGAGGACATGTTGCTTCGTACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGCTGCCATTCAAGAATACCAAAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTACGTTTTTTGACGTGTGTTCTCAACCTTTCGCGTTTTATTGAGGTTTTTTACAAAGATGAAGATAACTACACACATTCCGAAGGACTAATGAAGACCTACATTAATGATTTGCTCGTCAATCCCATCCCAACATGA
Protein sequence

>Msa0995540

MSAVASFNHDEKSVLQRNVADFHPSVWGDFFIPYASESLEFDINIAAQIDKLKEEVRQMLVSKIENPLKKVNLIDSICRLGVSYYFEDEINQVLEDIHKDFVQNGEITLKGNLHSISVLFRDKQGNFSETLIIDVEGMLNLYEASHMMIHEALAFTSGHLESIATQLSPSLATQVKHGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQSLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKMMAKVISILSYIDDTYDAYGTIDELELFTKAIERWDISCLDDLPDYMKFLYKPLLDVYEEIEQEVKKEGRVYAINHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPMLATTSYIGMGNIATNDIFNWVTSHPKIVNVAAVHCRLRDEIVSSEFEQKRGHVASYLECYMREYDMDREAAIQEYQKKIDNAWKDINEECLRPTKVPLRFLTCVLNLSRFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT*