Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0894020 | XP_004497487.1 | 73.897 | 544 | 142 | 0 | 6 | 549 | 12 | 555 | 0.0 | 863 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0894020 | sp|Q6Q3H3|TPSGD_VITVI | 52.190 | 548 | 258 | 1 | 2 | 549 | 13 | 556 | 0.0 | 611 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0894020 | A0A1S2Y0Q7 | 73.897 | 544 | 142 | 0 | 6 | 549 | 12 | 555 | 0.0 | 863 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0894020 | Msa0894030 | 0.838587 | 2.632603e-57 | -8.615850e-47 |
Msa0894020 | Msa0894040 | 0.877690 | 5.134862e-69 | -8.615850e-47 |
Msa0894020 | Msa0894070 | 0.828558 | 8.409527e-55 | -8.615850e-47 |
Msa0894020 | Msa0894100 | 0.802630 | 5.121615e-49 | -8.615850e-47 |
Msa0894020 | Msa0920760 | 0.800266 | 1.562016e-48 | -8.615850e-47 |
Msa0894020 | Msa0920820 | 0.801713 | 7.905848e-49 | -8.615850e-47 |
Msa0894020 | Msa0959240 | 0.838849 | 2.251450e-57 | -8.615850e-47 |
Msa0894020 | Msa0967190 | 0.851699 | 7.485881e-61 | -8.615850e-47 |
Msa0894020 | Msa0967200 | 0.840475 | 8.503195e-58 | -8.615850e-47 |
Msa0894020 | Msa0995520 | 0.849895 | 2.410527e-60 | -8.615850e-47 |
Msa0894020 | Msa0995540 | 0.806246 | 9.028081e-50 | -8.615850e-47 |
Msa0894020 | Msa0995570 | 0.897741 | 1.047679e-76 | -8.615850e-47 |
Msa0894020 | Msa0995580 | 0.832264 | 1.043770e-55 | -8.615850e-47 |
Msa0894020 | Msa0995600 | 0.806956 | 6.395253e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0894020 | MtrunA17_Chr7g0236991 | 68.306 | 549 | 174 | 0 | 1 | 549 | 4 | 552 | 0.0 | 810 |
Msa0894020 | MtrunA17_Chr6g0465441 | 68.488 | 549 | 173 | 0 | 1 | 549 | 4 | 552 | 0.0 | 809 |
Msa0894020 | MtrunA17_Chr7g0237001 | 68.124 | 549 | 175 | 0 | 1 | 549 | 4 | 552 | 0.0 | 808 |
Msa0894020 | MtrunA17_Chr7g0237041 | 68.124 | 549 | 175 | 0 | 1 | 549 | 4 | 552 | 0.0 | 808 |
Msa0894020 | MtrunA17_Chr7g0237081 | 68.124 | 549 | 175 | 0 | 1 | 549 | 4 | 552 | 0.0 | 808 |
Msa0894020 | MtrunA17_Chr7g0237051 | 68.124 | 549 | 175 | 0 | 1 | 549 | 4 | 552 | 0.0 | 808 |
Msa0894020 | MtrunA17_Chr5g0425371 | 70.741 | 540 | 158 | 0 | 10 | 549 | 13 | 552 | 0.0 | 805 |
Msa0894020 | MtrunA17_Chr6g0465911 | 68.124 | 549 | 175 | 0 | 1 | 549 | 4 | 552 | 0.0 | 795 |
Msa0894020 | MtrunA17_Chr6g0466051 | 67.942 | 549 | 176 | 0 | 1 | 549 | 4 | 552 | 0.0 | 793 |
Msa0894020 | MtrunA17_Chr4g0024691 | 68.566 | 544 | 171 | 0 | 6 | 549 | 17 | 560 | 0.0 | 785 |
Msa0894020 | MtrunA17_Chr6g0451711 | 66.667 | 549 | 182 | 1 | 2 | 549 | 8 | 556 | 0.0 | 783 |
Msa0894020 | MtrunA17_Chr3g0105071 | 66.120 | 549 | 185 | 1 | 1 | 548 | 7 | 555 | 0.0 | 767 |
Msa0894020 | MtrunA17_Chr3g0082691 | 65.036 | 552 | 190 | 2 | 1 | 549 | 1 | 552 | 0.0 | 755 |
Msa0894020 | MtrunA17_Chr6g0465851 | 69.052 | 517 | 160 | 0 | 33 | 549 | 1 | 517 | 0.0 | 754 |
Msa0894020 | MtrunA17_Chr5g0431651 | 64.428 | 551 | 194 | 2 | 1 | 549 | 1 | 551 | 0.0 | 743 |
Msa0894020 | MtrunA17_Chr7g0236961 | 69.416 | 497 | 152 | 0 | 53 | 549 | 1 | 497 | 0.0 | 743 |
Msa0894020 | MtrunA17_Chr7g0237011 | 69.416 | 497 | 152 | 0 | 53 | 549 | 1 | 497 | 0.0 | 741 |
Msa0894020 | MtrunA17_Chr5g0431571 | 65.441 | 544 | 187 | 1 | 6 | 548 | 4 | 547 | 0.0 | 736 |
Msa0894020 | MtrunA17_Chr4g0042111 | 58.212 | 548 | 226 | 2 | 4 | 549 | 15 | 561 | 0.0 | 664 |
Msa0894020 | MtrunA17_Chr7g0236971 | 69.500 | 400 | 122 | 0 | 150 | 549 | 1 | 400 | 0.0 | 605 |
Msa0894020 | MtrunA17_Chr6g0465981 | 68.919 | 370 | 115 | 0 | 1 | 370 | 4 | 373 | 0.0 | 543 |
Msa0894020 | MtrunA17_Chr6g0465871 | 68.919 | 370 | 115 | 0 | 1 | 370 | 4 | 373 | 0.0 | 543 |
Msa0894020 | MtrunA17_Chr6g0466081 | 68.919 | 370 | 115 | 0 | 1 | 370 | 4 | 373 | 0.0 | 543 |
Msa0894020 | MtrunA17_Chr6g0465931 | 70.414 | 338 | 100 | 0 | 33 | 370 | 1 | 338 | 5.65e-177 | 502 |
Msa0894020 | MtrunA17_Chr6g0466111 | 70.414 | 338 | 100 | 0 | 33 | 370 | 1 | 338 | 1.09e-176 | 501 |
Msa0894020 | MtrunA17_Chr2g0319041 | 45.421 | 546 | 290 | 7 | 9 | 548 | 12 | 555 | 2.93e-174 | 504 |
Msa0894020 | MtrunA17_Chr8g0336181 | 46.168 | 548 | 287 | 6 | 7 | 548 | 9 | 554 | 6.58e-172 | 498 |
Msa0894020 | MtrunA17_Chr7g0236951 | 70.476 | 315 | 93 | 0 | 53 | 367 | 1 | 315 | 3.63e-168 | 479 |
Msa0894020 | MtrunA17_Chr7g0237031 | 70.476 | 315 | 93 | 0 | 53 | 367 | 1 | 315 | 9.47e-168 | 478 |
Msa0894020 | MtrunA17_Chr2g0319051 | 45.401 | 511 | 273 | 6 | 42 | 548 | 4 | 512 | 2.78e-164 | 477 |
Msa0894020 | MtrunA17_Chr4g0008621 | 46.250 | 400 | 211 | 4 | 9 | 404 | 19 | 418 | 3.83e-125 | 374 |
Msa0894020 | MtrunA17_Chr6g0466031 | 65.251 | 259 | 90 | 0 | 291 | 549 | 1 | 259 | 3.51e-121 | 357 |
Msa0894020 | MtrunA17_Chr5g0445511 | 66.946 | 239 | 79 | 0 | 145 | 383 | 1 | 239 | 1.33e-117 | 347 |
Msa0894020 | MtrunA17_Chr2g0319071 | 38.104 | 517 | 270 | 10 | 38 | 550 | 19 | 489 | 7.98e-116 | 352 |
Msa0894020 | MtrunA17_Chr4g0023911 | 34.615 | 546 | 346 | 4 | 7 | 548 | 41 | 579 | 2.24e-113 | 348 |
Msa0894020 | MtrunA17_Chr7g0237061 | 60.232 | 259 | 80 | 2 | 291 | 549 | 1 | 236 | 6.04e-107 | 320 |
Msa0894020 | MtrunA17_Chr2g0323131 | 36.117 | 515 | 306 | 9 | 43 | 550 | 67 | 565 | 7.28e-107 | 331 |
Msa0894020 | MtrunA17_Chr2g0310331 | 35.675 | 541 | 338 | 6 | 11 | 549 | 53 | 585 | 1.20e-106 | 331 |
Msa0894020 | MtrunA17_Chr2g0323151 | 35.583 | 489 | 298 | 5 | 65 | 549 | 4 | 479 | 3.40e-104 | 322 |
Msa0894020 | MtrunA17_Chr8g0357411 | 33.394 | 551 | 358 | 5 | 1 | 549 | 45 | 588 | 2.15e-95 | 302 |
Msa0894020 | MtrunA17_Chr7g0237071 | 69.307 | 202 | 62 | 0 | 53 | 254 | 1 | 202 | 1.76e-94 | 287 |
Msa0894020 | MtrunA17_Chr6g0466021 | 66.162 | 198 | 67 | 0 | 1 | 198 | 4 | 201 | 6.42e-91 | 277 |
Msa0894020 | MtrunA17_Chr4g0048921 | 32.233 | 515 | 336 | 6 | 38 | 548 | 64 | 569 | 2.75e-86 | 278 |
Msa0894020 | MtrunA17_Chr4g0048911 | 30.769 | 546 | 366 | 9 | 2 | 542 | 18 | 556 | 3.93e-84 | 272 |
Msa0894020 | MtrunA17_Chr7g0237021 | 68.421 | 171 | 54 | 0 | 379 | 549 | 1 | 171 | 1.24e-83 | 257 |
Msa0894020 | MtrunA17_Chr7g0236941 | 68.421 | 171 | 54 | 0 | 379 | 549 | 1 | 171 | 1.24e-83 | 257 |
Msa0894020 | MtrunA17_Chr6g0465941 | 66.082 | 171 | 58 | 0 | 379 | 549 | 1 | 171 | 1.22e-78 | 244 |
Msa0894020 | MtrunA17_Chr6g0466121 | 66.082 | 171 | 58 | 0 | 379 | 549 | 1 | 171 | 1.22e-78 | 244 |
Msa0894020 | MtrunA17_Chr6g0465991 | 66.082 | 171 | 58 | 0 | 379 | 549 | 1 | 171 | 1.22e-78 | 244 |
Msa0894020 | MtrunA17_Chr6g0466091 | 66.082 | 171 | 58 | 0 | 379 | 549 | 1 | 171 | 1.22e-78 | 244 |
Msa0894020 | MtrunA17_Chr6g0465881 | 65.497 | 171 | 59 | 0 | 379 | 549 | 1 | 171 | 6.85e-78 | 243 |
Msa0894020 | MtrunA17_Chr2g0319081 | 39.815 | 324 | 176 | 7 | 228 | 548 | 118 | 425 | 1.33e-74 | 243 |
Msa0894020 | MtrunA17_Chr2g0319081 | 40.164 | 122 | 72 | 1 | 9 | 129 | 19 | 140 | 8.00e-23 | 101 |
Msa0894020 | MtrunA17_Chr5g0445501 | 61.404 | 171 | 66 | 0 | 379 | 549 | 1 | 171 | 1.26e-72 | 229 |
Msa0894020 | MtrunA17_Chr2g0280581 | 28.952 | 525 | 346 | 9 | 36 | 541 | 2 | 518 | 1.45e-72 | 240 |
Msa0894020 | MtrunA17_Chr2g0310401 | 32.477 | 428 | 286 | 2 | 124 | 549 | 5 | 431 | 8.50e-72 | 236 |
Msa0894020 | MtrunA17_Chr7g0236921 | 64.331 | 157 | 52 | 1 | 397 | 549 | 1 | 157 | 1.30e-69 | 221 |
Msa0894020 | MtrunA17_Chr6g0477111 | 29.938 | 481 | 313 | 8 | 67 | 532 | 6 | 477 | 5.80e-68 | 228 |
Msa0894020 | MtrunA17_Chr3g0109001 | 29.713 | 488 | 318 | 8 | 57 | 528 | 21 | 499 | 6.21e-68 | 228 |
Msa0894020 | MtrunA17_Chr3g0108941 | 28.850 | 513 | 337 | 10 | 48 | 544 | 13 | 513 | 3.55e-67 | 226 |
Msa0894020 | MtrunA17_Chr3g0109021 | 29.839 | 496 | 323 | 9 | 48 | 528 | 13 | 498 | 7.76e-67 | 225 |
Msa0894020 | MtrunA17_Chr3g0109031 | 29.184 | 490 | 334 | 8 | 48 | 528 | 13 | 498 | 4.03e-66 | 223 |
Msa0894020 | MtrunA17_Chr3g0108991 | 29.637 | 496 | 324 | 9 | 48 | 528 | 13 | 498 | 7.78e-66 | 223 |
Msa0894020 | MtrunA17_Chr3g0108951 | 29.637 | 496 | 324 | 9 | 48 | 528 | 13 | 498 | 7.78e-66 | 223 |
Msa0894020 | MtrunA17_Chr3g0108981 | 29.350 | 477 | 314 | 6 | 67 | 528 | 6 | 474 | 8.45e-66 | 222 |
Msa0894020 | MtrunA17_Chr3g0108961 | 29.350 | 477 | 314 | 6 | 67 | 528 | 6 | 474 | 8.45e-66 | 222 |
Msa0894020 | MtrunA17_Chr7g0236931 | 62.745 | 153 | 54 | 1 | 397 | 549 | 1 | 150 | 1.61e-65 | 209 |
Msa0894020 | MtrunA17_Chr3g0105691 | 29.388 | 490 | 333 | 7 | 48 | 528 | 46 | 531 | 3.86e-65 | 221 |
Msa0894020 | MtrunA17_Chr3g0108971 | 29.560 | 477 | 312 | 8 | 67 | 528 | 6 | 473 | 1.41e-64 | 218 |
Msa0894020 | MtrunA17_Chr3g0109011 | 29.350 | 477 | 313 | 8 | 67 | 528 | 6 | 473 | 2.01e-64 | 218 |
Msa0894020 | MtrunA17_Chr3g0099031 | 29.020 | 510 | 339 | 9 | 48 | 544 | 13 | 512 | 6.04e-62 | 212 |
Msa0894020 | MtrunA17_Chr6g0477121 | 29.024 | 410 | 280 | 6 | 127 | 528 | 10 | 416 | 2.04e-55 | 192 |
Msa0894020 | MtrunA17_Chr7g0233861 | 63.704 | 135 | 40 | 1 | 190 | 324 | 33 | 158 | 5.89e-52 | 175 |
Msa0894020 | MtrunA17_Chr7g0236981 | 58.915 | 129 | 53 | 0 | 1 | 129 | 4 | 132 | 3.18e-50 | 169 |
Msa0894020 | MtrunA17_Chr7g0217361 | 33.333 | 300 | 199 | 1 | 249 | 547 | 8 | 307 | 8.27e-50 | 174 |
Msa0894020 | MtrunA17_Chr8g0357221 | 37.959 | 245 | 143 | 5 | 3 | 245 | 47 | 284 | 9.01e-42 | 152 |
Msa0894020 | MtrunA17_Chr5g0445401 | 71.579 | 95 | 23 | 2 | 160 | 251 | 1 | 94 | 4.76e-35 | 127 |
Msa0894020 | MtrunA17_Chr8g0357231 | 29.730 | 259 | 180 | 2 | 292 | 549 | 1 | 258 | 1.53e-33 | 128 |
Msa0894020 | MtrunA17_Chr2g0310121 | 24.225 | 516 | 349 | 15 | 64 | 548 | 275 | 779 | 1.92e-32 | 132 |
Msa0894020 | MtrunA17_Chr3g0101681 | 25.430 | 523 | 334 | 17 | 64 | 548 | 276 | 780 | 2.55e-32 | 132 |
Msa0894020 | MtrunA17_Chr3g0082711 | 48.696 | 115 | 42 | 1 | 435 | 549 | 1 | 98 | 3.31e-32 | 119 |
Msa0894020 | MtrunA17_Chr5g0445521 | 65.060 | 83 | 29 | 0 | 6 | 88 | 12 | 94 | 5.25e-31 | 116 |
Msa0894020 | MtrunA17_Chr7g0259881 | 28.623 | 276 | 167 | 7 | 60 | 307 | 225 | 498 | 1.33e-26 | 114 |
Msa0894020 | MtrunA17_Chr7g0218001 | 30.686 | 277 | 158 | 7 | 60 | 304 | 342 | 616 | 2.69e-25 | 110 |
Msa0894020 | MtrunA17_Chr7g0217351 | 27.778 | 216 | 149 | 4 | 40 | 252 | 62 | 273 | 8.41e-21 | 93.2 |
Msa0894020 | MtrunA17_Chr2g0281651 | 25.725 | 276 | 196 | 6 | 227 | 499 | 43 | 312 | 1.16e-18 | 88.6 |
Msa0894020 | MtrunA17_Chr7g0218041 | 31.667 | 240 | 137 | 7 | 114 | 328 | 3 | 240 | 1.34e-17 | 85.5 |
Msa0894020 | MtrunA17_Chr2g0310411 | 33.600 | 125 | 73 | 4 | 2 | 125 | 49 | 164 | 3.93e-14 | 70.5 |
Msa0894020 | MtrunA17_Chr5g0411111 | 38.889 | 126 | 62 | 5 | 114 | 228 | 3 | 124 | 5.28e-14 | 68.9 |
Msa0894020 | MtrunA17_Chr8g0370481 | 29.688 | 192 | 102 | 7 | 126 | 285 | 4 | 194 | 7.51e-13 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0894020 | AT5G23960.2 | 40.110 | 546 | 320 | 5 | 7 | 549 | 3 | 544 | 1.01e-149 | 441 |
Msa0894020 | AT5G23960.1 | 40.146 | 548 | 319 | 6 | 7 | 549 | 3 | 546 | 6.43e-149 | 439 |
Msa0894020 | AT1G70080.1 | 38.278 | 546 | 327 | 7 | 11 | 548 | 66 | 609 | 8.33e-126 | 382 |
Msa0894020 | AT3G14490.1 | 37.912 | 546 | 327 | 7 | 11 | 549 | 60 | 600 | 1.15e-121 | 371 |
Msa0894020 | AT3G14520.1 | 36.735 | 539 | 333 | 5 | 16 | 549 | 68 | 603 | 6.06e-121 | 369 |
Msa0894020 | AT1G31950.1 | 36.178 | 539 | 336 | 4 | 16 | 549 | 70 | 605 | 1.37e-119 | 366 |
Msa0894020 | AT3G14540.1 | 36.920 | 539 | 332 | 4 | 16 | 549 | 65 | 600 | 5.77e-119 | 364 |
Msa0894020 | AT1G31950.3 | 36.044 | 541 | 335 | 6 | 16 | 549 | 70 | 606 | 6.92e-119 | 364 |
Msa0894020 | AT5G44630.1 | 35.780 | 545 | 339 | 6 | 12 | 548 | 14 | 555 | 6.72e-113 | 347 |
Msa0894020 | AT1G33750.1 | 34.831 | 534 | 342 | 4 | 18 | 549 | 73 | 602 | 1.09e-112 | 348 |
Msa0894020 | AT3G32030.1 | 35.065 | 539 | 342 | 6 | 16 | 549 | 68 | 603 | 2.02e-112 | 347 |
Msa0894020 | AT3G29410.1 | 34.807 | 543 | 346 | 6 | 11 | 549 | 64 | 602 | 1.51e-110 | 342 |
Msa0894020 | AT4G13300.1 | 36.685 | 537 | 329 | 7 | 19 | 548 | 20 | 552 | 1.97e-110 | 340 |
Msa0894020 | AT4G20210.1 | 34.432 | 546 | 345 | 7 | 11 | 548 | 58 | 598 | 6.83e-109 | 338 |
Msa0894020 | AT4G20200.1 | 36.100 | 518 | 313 | 9 | 42 | 548 | 92 | 602 | 2.11e-108 | 337 |
Msa0894020 | AT4G15870.1 | 34.657 | 554 | 336 | 9 | 3 | 548 | 61 | 596 | 4.93e-107 | 333 |
Msa0894020 | AT3G29190.1 | 34.766 | 535 | 323 | 9 | 32 | 549 | 75 | 600 | 2.31e-106 | 331 |
Msa0894020 | AT3G29410.2 | 35.000 | 500 | 319 | 4 | 53 | 549 | 1 | 497 | 2.01e-104 | 323 |
Msa0894020 | AT4G13280.2 | 35.888 | 535 | 332 | 7 | 21 | 548 | 22 | 552 | 2.03e-104 | 325 |
Msa0894020 | AT4G20230.2 | 33.826 | 541 | 336 | 9 | 19 | 546 | 82 | 613 | 5.17e-100 | 315 |
Msa0894020 | AT4G20230.1 | 33.826 | 541 | 336 | 9 | 19 | 546 | 70 | 601 | 7.16e-100 | 315 |
Msa0894020 | AT3G14540.2 | 37.444 | 446 | 272 | 3 | 16 | 457 | 65 | 507 | 1.29e-99 | 311 |
Msa0894020 | AT1G31950.2 | 36.105 | 457 | 281 | 6 | 16 | 465 | 70 | 522 | 2.38e-99 | 311 |
Msa0894020 | AT4G16730.1 | 31.423 | 541 | 354 | 7 | 22 | 549 | 2 | 538 | 7.59e-98 | 307 |
Msa0894020 | AT3G29110.1 | 34.066 | 546 | 347 | 8 | 11 | 548 | 55 | 595 | 1.61e-97 | 308 |
Msa0894020 | AT2G23230.2 | 33.700 | 546 | 347 | 9 | 10 | 545 | 55 | 595 | 5.91e-97 | 307 |
Msa0894020 | AT2G23230.1 | 33.516 | 546 | 343 | 10 | 10 | 545 | 55 | 590 | 2.02e-94 | 300 |
Msa0894020 | AT1G66020.1 | 32.721 | 544 | 357 | 6 | 11 | 548 | 56 | 596 | 2.22e-94 | 300 |
Msa0894020 | AT4G16730.2 | 31.717 | 495 | 323 | 5 | 67 | 549 | 1 | 492 | 6.85e-94 | 296 |
Msa0894020 | AT4G13280.1 | 34.766 | 535 | 308 | 9 | 21 | 548 | 22 | 522 | 5.66e-93 | 294 |
Msa0894020 | AT1G48800.1 | 31.685 | 546 | 357 | 9 | 11 | 546 | 63 | 602 | 8.65e-93 | 296 |
Msa0894020 | AT2G24210.1 | 31.362 | 558 | 364 | 9 | 4 | 549 | 39 | 589 | 3.14e-90 | 289 |
Msa0894020 | AT4G16740.1 | 31.171 | 555 | 359 | 10 | 6 | 549 | 21 | 563 | 2.72e-88 | 283 |
Msa0894020 | AT3G25820.1 | 31.239 | 557 | 359 | 11 | 9 | 549 | 45 | 593 | 3.34e-87 | 281 |
Msa0894020 | AT3G25830.1 | 31.239 | 557 | 359 | 11 | 9 | 549 | 45 | 593 | 3.34e-87 | 281 |
Msa0894020 | AT1G61680.1 | 31.781 | 494 | 319 | 4 | 48 | 528 | 69 | 557 | 4.27e-85 | 275 |
Msa0894020 | AT5G48110.1 | 37.941 | 340 | 206 | 5 | 210 | 548 | 2 | 337 | 9.44e-85 | 267 |
Msa0894020 | AT3G25810.1 | 30.605 | 562 | 359 | 11 | 9 | 549 | 45 | 596 | 1.21e-84 | 275 |
Msa0894020 | AT1G61680.2 | 31.377 | 494 | 314 | 5 | 48 | 528 | 69 | 550 | 7.72e-82 | 266 |
Msa0894020 | AT1G48820.1 | 31.169 | 539 | 321 | 11 | 11 | 543 | 63 | 557 | 2.91e-81 | 265 |
Msa0894020 | AT4G16740.2 | 35.393 | 356 | 212 | 6 | 6 | 351 | 21 | 368 | 2.54e-68 | 226 |
Msa0894020 | AT1G66020.2 | 34.688 | 369 | 232 | 6 | 11 | 373 | 56 | 421 | 7.01e-65 | 218 |
Msa0894020 | AT3G25820.2 | 32.208 | 385 | 244 | 7 | 9 | 383 | 45 | 422 | 4.44e-64 | 216 |
Msa0894020 | AT4G16740.4 | 35.258 | 329 | 195 | 6 | 6 | 324 | 21 | 341 | 2.47e-60 | 204 |
Msa0894020 | AT4G16740.3 | 35.258 | 329 | 195 | 6 | 6 | 324 | 21 | 341 | 2.47e-60 | 204 |
Msa0894020 | AT3G25820.4 | 33.436 | 326 | 200 | 7 | 9 | 324 | 45 | 363 | 5.90e-55 | 191 |
Msa0894020 | AT3G25820.3 | 33.436 | 326 | 200 | 7 | 9 | 324 | 45 | 363 | 5.90e-55 | 191 |
Msa0894020 | AT1G61120.1 | 23.930 | 514 | 347 | 13 | 62 | 548 | 286 | 782 | 6.06e-28 | 119 |
Msa0894020 | AT1G79460.1 | 23.608 | 521 | 345 | 19 | 64 | 548 | 274 | 777 | 1.16e-25 | 112 |
Msa0894020 | AT4G02780.1 | 29.963 | 267 | 149 | 8 | 60 | 294 | 327 | 587 | 1.21e-24 | 108 |
Find 95 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTACTTACGTTGGCAAAAT+TGG | 0.135143 | 6_1:-79030863 | Msa0894020:CDS |
ATTCTATTTCTGTGCTATTT+AGG | 0.140011 | 6_1:-79031845 | Msa0894020:CDS |
TTCTATTTCTGTGCTATTTA+GGG | 0.183039 | 6_1:-79031844 | Msa0894020:CDS |
CTGCTGTTCATTGCAGGCTT+AGG | 0.241228 | 6_1:-79029334 | Msa0894020:CDS |
AGCCTACATCAAAAGGAATT+TGG | 0.257080 | 6_1:-79030823 | Msa0894020:CDS |
ACGTAAGTAGAATTTCATTA+TGG | 0.259315 | 6_1:+79030875 | None:intergenic |
GATTCATGGTGAGAAAATTT+TGG | 0.259321 | 6_1:-79031061 | Msa0894020:CDS |
TCCGTATGCTTCAGAATCTT+TGG | 0.269105 | 6_1:-79032597 | Msa0894020:intron |
GTCATCAATGTATGATAAAA+TGG | 0.271835 | 6_1:+79030553 | None:intergenic |
ATGCTGCTGCTGTTCATTGC+AGG | 0.286868 | 6_1:-79029340 | Msa0894020:CDS |
CTTGCGACACAAGTCAAATA+TGG | 0.304641 | 6_1:-79030976 | Msa0894020:CDS |
CAGATTTCCACCCTAGCGTT+TGG | 0.305039 | 6_1:-79032634 | Msa0894020:CDS |
AGATTTCCACCCTAGCGTTT+GGG | 0.318717 | 6_1:-79032633 | Msa0894020:CDS |
AGACGAAATTAATCAAGTTT+TGG | 0.321368 | 6_1:-79031925 | Msa0894020:CDS |
TTCCTTGCTTGTCCTTGAAT+TGG | 0.334271 | 6_1:+79031151 | None:intergenic |
TAGTTGTTTGGATGATCTTC+CGG | 0.341349 | 6_1:-79030206 | Msa0894020:CDS |
GAGTAGTAGAATGTTGCTTT+TGG | 0.347068 | 6_1:-79030640 | Msa0894020:CDS |
TTATATGAGGGAATATGATA+TGG | 0.360767 | 6_1:-79028984 | Msa0894020:CDS |
CCAATTGAAGATATCATTTG+TGG | 0.372281 | 6_1:+79029388 | None:intergenic |
TTCATGTACTCCTCTGTTGT+TGG | 0.374525 | 6_1:+79029479 | None:intergenic |
TGCTGTTCATTGCAGGCTTA+GGG | 0.376798 | 6_1:-79029333 | Msa0894020:CDS |
CCACAAATGATATCTTCAAT+TGG | 0.377027 | 6_1:-79029388 | Msa0894020:CDS |
CGTAAGTAGAATTTCATTAT+GGG | 0.378944 | 6_1:+79030876 | None:intergenic |
AAACGTAATGGAACTTTAGT+TGG | 0.382677 | 6_1:+79028884 | None:intergenic |
TAGGTGGGATATTAGTTGTT+TGG | 0.387739 | 6_1:-79030218 | Msa0894020:CDS |
GGATGAATCTTGCTCATAGA+TGG | 0.390050 | 6_1:+79030897 | None:intergenic |
GATTGACTCAATATGTCGTT+TGG | 0.390339 | 6_1:-79031967 | Msa0894020:CDS |
CATACTTGGAATGTTATATG+AGG | 0.398446 | 6_1:-79028997 | Msa0894020:CDS |
AGGACATGTTGCTTCATACT+TGG | 0.399041 | 6_1:-79029011 | Msa0894020:CDS |
ATATAAATGAGGAATGTCTT+AGG | 0.410838 | 6_1:-79028907 | Msa0894020:CDS |
TCGCAAGAGAAGGACTCAAT+TGG | 0.412353 | 6_1:+79030992 | None:intergenic |
TAGAGAAACTTCATGTAATC+CGG | 0.427919 | 6_1:+79030187 | None:intergenic |
GTTTCTCTATAAACCACTCT+TGG | 0.439981 | 6_1:-79030173 | Msa0894020:CDS |
ACAAGAAAATTGACAATGCT+TGG | 0.444020 | 6_1:-79028934 | Msa0894020:CDS |
TTTCTTGTGGCATTCTTGAA+TGG | 0.445959 | 6_1:+79028949 | None:intergenic |
GCTCCAAAGCCTACATCAAA+AGG | 0.450495 | 6_1:-79030830 | Msa0894020:CDS |
TACGACTTCTTACATTGGAA+TGG | 0.454510 | 6_1:-79029420 | Msa0894020:CDS |
CACAAATGATATCTTCAATT+GGG | 0.456797 | 6_1:-79029387 | Msa0894020:CDS |
ACTACTCTGTCCCGTGCATA+AGG | 0.457542 | 6_1:+79030656 | None:intergenic |
ACGACTTCTTACATTGGAAT+GGG | 0.460983 | 6_1:-79029419 | Msa0894020:CDS |
GCCTCACATATGATGATTCA+TGG | 0.465433 | 6_1:-79031075 | Msa0894020:CDS |
ATTGACTCAATATGTCGTTT+GGG | 0.473862 | 6_1:-79031966 | Msa0894020:CDS |
ACCAAAATCAATGCTCATGT+TGG | 0.476318 | 6_1:+79028740 | None:intergenic |
AGATGTATTCAACCAATTCA+AGG | 0.477088 | 6_1:-79031163 | Msa0894020:CDS |
GAGCAAGAAGTGAAGAAAGA+AGG | 0.477567 | 6_1:-79030133 | Msa0894020:CDS |
TTCCTTGCTTGACAATATTG+AGG | 0.480415 | 6_1:+79030596 | None:intergenic |
CGCAAGAGAAGGACTCAATT+GGG | 0.484801 | 6_1:+79030993 | None:intergenic |
CCAAAATCAATGCTCATGTT+GGG | 0.485248 | 6_1:+79028741 | None:intergenic |
CATGGTCTTTACATTTCACC+TGG | 0.512141 | 6_1:-79031810 | Msa0894020:intron |
AACATTGATCATAGATGTTG+AGG | 0.512550 | 6_1:-79031118 | Msa0894020:CDS |
AACAATATCAAGTGGTTACC+CGG | 0.513550 | 6_1:-79029450 | Msa0894020:CDS |
ATCAATGCTCATGTTGGGAT+GGG | 0.522554 | 6_1:+79028746 | None:intergenic |
ATATAGGTGGTGGAAGGAGT+TGG | 0.524102 | 6_1:-79030696 | Msa0894020:intron |
AGCCTCAATATTGTCAAGCA+AGG | 0.528176 | 6_1:-79030598 | Msa0894020:CDS |
CTGTGCTATTTAGGGTGTTG+AGG | 0.528533 | 6_1:-79031836 | Msa0894020:CDS |
AATCAATGCTCATGTTGGGA+TGG | 0.533171 | 6_1:+79028745 | None:intergenic |
TGGCCTCACTCATGTAAGCT+TGG | 0.536408 | 6_1:+79029525 | None:intergenic |
ATCAAGTGGTTACCCGGTGT+TGG | 0.539295 | 6_1:-79029444 | Msa0894020:CDS |
TTGACTTGTGTCGCAAGAGA+AGG | 0.540007 | 6_1:+79030982 | None:intergenic |
GATTTCCACCCTAGCGTTTG+GGG | 0.542721 | 6_1:-79032632 | Msa0894020:CDS |
GCAAATTGATAAACTAAAAG+AGG | 0.546970 | 6_1:-79032045 | Msa0894020:CDS |
TAGCTTCTTGCCTCTAGCCT+AGG | 0.554871 | 6_1:+79030925 | None:intergenic |
ATACTTGGAATGTTATATGA+GGG | 0.559157 | 6_1:-79028996 | Msa0894020:CDS |
GACAAGCAAATCATTAATGT+AGG | 0.560101 | 6_1:+79028772 | None:intergenic |
GGAATTTGATATAAATATTG+CGG | 0.567112 | 6_1:-79032069 | Msa0894020:CDS |
TTTAGGGTGTTGAGGCAACA+TGG | 0.568035 | 6_1:-79031828 | Msa0894020:CDS |
AATGGAGAAATAACTCTCAA+AGG | 0.571243 | 6_1:-79031876 | Msa0894020:CDS |
TTGGCTACGACTTCTTACAT+TGG | 0.575246 | 6_1:-79029425 | Msa0894020:CDS |
AAGCTTACATGAGTGAGGCC+AGG | 0.576657 | 6_1:-79029523 | Msa0894020:CDS |
ATAGCACAGAAATAGAATGA+AGG | 0.580450 | 6_1:+79031850 | None:intergenic |
GATGACACGTATGATGCATA+CGG | 0.587584 | 6_1:-79030536 | Msa0894020:CDS |
TAAGAAGTCGTAGCCAACAC+CGG | 0.589439 | 6_1:+79029431 | None:intergenic |
AAGAAGTCGTAGCCAACACC+GGG | 0.590372 | 6_1:+79029432 | None:intergenic |
ACCAAAGATTCTGAAGCATA+CGG | 0.593001 | 6_1:+79032596 | None:intergenic |
ATTGGGTTGCAATTGACTCA+AGG | 0.594526 | 6_1:+79031010 | None:intergenic |
AACACATCAACAATATCAAG+TGG | 0.595383 | 6_1:-79029458 | Msa0894020:CDS |
TCTTCATAAACATCCAAGAG+TGG | 0.597368 | 6_1:+79030160 | None:intergenic |
TTGTCAAGCAAGGAAAGTGA+TGG | 0.598035 | 6_1:-79030588 | Msa0894020:CDS |
ACATTGATCATAGATGTTGA+GGG | 0.599537 | 6_1:-79031117 | Msa0894020:CDS |
GACAACTACACACATTCTGA+AGG | 0.603730 | 6_1:-79028806 | Msa0894020:CDS |
TTTCCACCCTAGCGTTTGGG+GGG | 0.604138 | 6_1:-79032630 | Msa0894020:CDS |
TAATGAAATTCTACTTACGT+TGG | 0.604203 | 6_1:-79030872 | Msa0894020:CDS |
AACCAATTCAAGGACAAGCA+AGG | 0.604565 | 6_1:-79031153 | Msa0894020:CDS |
CTTTATATATAGGTGGTGGA+AGG | 0.614852 | 6_1:-79030702 | Msa0894020:intron |
ATTTCCACCCTAGCGTTTGG+GGG | 0.619288 | 6_1:-79032631 | Msa0894020:CDS |
AAACCTCAATAAAACGCGAA+AGG | 0.623927 | 6_1:+79028843 | None:intergenic |
TGCTTGGAAAGATATAAATG+AGG | 0.630445 | 6_1:-79028918 | Msa0894020:CDS |
ACCATGAATCATCATATGTG+AGG | 0.641340 | 6_1:+79031074 | None:intergenic |
AATTGATAAACTAAAAGAGG+AGG | 0.642973 | 6_1:-79032042 | Msa0894020:CDS |
ATAGTTAACATTCAACCACC+TGG | 0.654774 | 6_1:+79029505 | None:intergenic |
GGATGAAATTGTGTCTAGCG+AGG | 0.663791 | 6_1:-79029312 | Msa0894020:intron |
AGTCCAAGCTTACATGAGTG+AGG | 0.665674 | 6_1:-79029528 | Msa0894020:CDS |
GGGTTGCAATTGACTCAAGG+TGG | 0.669237 | 6_1:+79031013 | None:intergenic |
CTTACATGAGTGAGGCCAGG+TGG | 0.678940 | 6_1:-79029520 | Msa0894020:CDS |
TAACTATATACCAACAACAG+AGG | 0.706002 | 6_1:-79029489 | Msa0894020:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATATAAACATCTAAAAAA+TGG | - | chr6_1:79029823-79029842 | Msa0894020:intron | 10.0% |
!!! | ATTATATTTTTGATATCATT+AGG | - | chr6_1:79030052-79030071 | Msa0894020:intron | 10.0% |
!!! | ATTTAATTTTAAATTAAGGA+GGG | + | chr6_1:79030661-79030680 | None:intergenic | 10.0% |
!!! | AATTTAATTTTAAATTAAGG+AGG | + | chr6_1:79030662-79030681 | None:intergenic | 10.0% |
!!! | TTTTATCATATATTTATACA+CGG | - | chr6_1:79031134-79031153 | Msa0894020:CDS | 10.0% |
!! | GAATCATTAATATAAATAAG+TGG | + | chr6_1:79029655-79029674 | None:intergenic | 15.0% |
!!! | TAATTTTTTAACTTTGATCA+TGG | - | chr6_1:79029792-79029811 | Msa0894020:intron | 15.0% |
!!! | AATTTTTTAACTTTGATCAT+GGG | - | chr6_1:79029793-79029812 | Msa0894020:intron | 15.0% |
!!! | TGATTGTTTTTACATAAAAT+AGG | - | chr6_1:79029955-79029974 | Msa0894020:intron | 15.0% |
!! | ATAAAGACCAAAAATATTAT+AGG | + | chr6_1:79030712-79030731 | None:intergenic | 15.0% |
!!! | TATTTTTGGTCTTTATATAT+AGG | - | chr6_1:79030716-79030735 | Msa0894020:intron | 15.0% |
!!! | ATTAAATAATAACTTTTAGG+TGG | - | chr6_1:79031072-79031091 | Msa0894020:CDS | 15.0% |
!!! | TTGTAATGAAAATGAATTTT+AGG | - | chr6_1:79031191-79031210 | Msa0894020:intron | 15.0% |
!!! | TAAAATTTTATTCTGATAAC+AGG | + | chr6_1:79031444-79031463 | None:intergenic | 15.0% |
!!! | TGTTATCAGAATAAAATTTT+AGG | - | chr6_1:79031443-79031462 | Msa0894020:intron | 15.0% |
!! | CATATTTACAAAAAATACAT+AGG | - | chr6_1:79031813-79031832 | Msa0894020:CDS | 15.0% |
!! | AATATAGTAGAATTGTTAAT+AGG | + | chr6_1:79031854-79031873 | None:intergenic | 15.0% |
!! | TATTATATTAACTCTTAAGA+CGG | + | chr6_1:79032278-79032297 | None:intergenic | 15.0% |
!! | AATATAATAAGATGACATAA+TGG | - | chr6_1:79032289-79032308 | Msa0894020:intron | 15.0% |
!! | TATGTTATGAAAAGTGATTA+AGG | - | chr6_1:79028923-79028942 | Msa0894020:CDS | 20.0% |
!! | GTAAAAAGATCCTATATTAT+TGG | + | chr6_1:79029259-79029278 | None:intergenic | 20.0% |
!!! | ACACTTAATTGTTATTTGAA+AGG | + | chr6_1:79029291-79029310 | None:intergenic | 20.0% |
!! | GGAATTTGATATAAATATTG+CGG | - | chr6_1:79029359-79029378 | Msa0894020:CDS | 20.0% |
!!! | ATTTTTTAACTTTGATCATG+GGG | - | chr6_1:79029794-79029813 | Msa0894020:intron | 20.0% |
!!! | TGTTTTTACATAAAATAGGA+AGG | - | chr6_1:79029959-79029978 | Msa0894020:intron | 20.0% |
!! | AATTAAGATAATGTATAGTG+TGG | + | chr6_1:79030136-79030155 | None:intergenic | 20.0% |
!!! | CTAATTGCCTATAATATTTT+TGG | - | chr6_1:79030702-79030721 | Msa0894020:intron | 20.0% |
!!! | GTTTTTCTATCTCTAAATTT+TGG | + | chr6_1:79031007-79031026 | None:intergenic | 20.0% |
!!! | TAATGAAAATGAATTTTAGG+TGG | - | chr6_1:79031194-79031213 | Msa0894020:intron | 20.0% |
!!! | AATGAAAATGAATTTTAGGT+GGG | - | chr6_1:79031195-79031214 | Msa0894020:intron | 20.0% |
!!! | TTGTGATTAGAACATTTTTA+GGG | - | chr6_1:79031519-79031538 | Msa0894020:intron | 20.0% |
!!! | ATTGTTCATTTTTGTAAACA+AGG | - | chr6_1:79032205-79032224 | Msa0894020:intron | 20.0% |
! | GTTGTTCACGTAAAAAAAAA+GGG | + | chr6_1:79028870-79028889 | None:intergenic | 25.0% |
! | TGTTGTTCACGTAAAAAAAA+AGG | + | chr6_1:79028871-79028890 | None:intergenic | 25.0% |
! | GAATAAAACCAAGAGAAAAT+AGG | - | chr6_1:79028983-79029002 | Msa0894020:CDS | 25.0% |
! | CAAATGTGTAATATCTATGT+TGG | + | chr6_1:79029109-79029128 | None:intergenic | 25.0% |
! | GCAATGTTAGTAATATTAAG+TGG | + | chr6_1:79029167-79029186 | None:intergenic | 25.0% |
! | TTCAAGAATGCCAATAATAT+AGG | - | chr6_1:79029246-79029265 | Msa0894020:intron | 25.0% |
! | GCAAATTGATAAACTAAAAG+AGG | - | chr6_1:79029383-79029402 | Msa0894020:CDS | 25.0% |
! | AATTGATAAACTAAAAGAGG+AGG | - | chr6_1:79029386-79029405 | Msa0894020:CDS | 25.0% |
!! | AGACGAAATTAATCAAGTTT+TGG | - | chr6_1:79029503-79029522 | Msa0894020:CDS | 25.0% |
!!! | ATTCTATTTCTGTGCTATTT+AGG | - | chr6_1:79029583-79029602 | Msa0894020:intron | 25.0% |
!!! | TTCTATTTCTGTGCTATTTA+GGG | - | chr6_1:79029584-79029603 | Msa0894020:intron | 25.0% |
! | CGTTGTTACTAAAAATGTAA+AGG | + | chr6_1:79029861-79029880 | None:intergenic | 25.0% |
! | TATAATTATGTAAAGAACCG+AGG | + | chr6_1:79030038-79030057 | None:intergenic | 25.0% |
!!! | TATTTTTGATATCATTAGGC+CGG | - | chr6_1:79030056-79030075 | Msa0894020:intron | 25.0% |
! | CGTAAGTAGAATTTCATTAT+GGG | + | chr6_1:79030555-79030574 | None:intergenic | 25.0% |
! | ACGTAAGTAGAATTTCATTA+TGG | + | chr6_1:79030556-79030575 | None:intergenic | 25.0% |
! | TAATGAAATTCTACTTACGT+TGG | - | chr6_1:79030556-79030575 | Msa0894020:CDS | 25.0% |
!!! | TTTTGGTCTTTATATATAGG+TGG | - | chr6_1:79030719-79030738 | Msa0894020:intron | 25.0% |
! | GTCATCAATGTATGATAAAA+TGG | + | chr6_1:79030878-79030897 | None:intergenic | 25.0% |
!! | TGAGTTAGAACTTTTTACTA+AGG | - | chr6_1:79030924-79030943 | Msa0894020:CDS | 25.0% |
!! | TTTTTACTAAGGCAATTGAA+AGG | - | chr6_1:79030935-79030954 | Msa0894020:CDS | 25.0% |
!!! | TTCTTTTAAGAAGTGGTTAA+TGG | + | chr6_1:79031332-79031351 | None:intergenic | 25.0% |
! | GATCTATGTATGTATCTATA+CGG | + | chr6_1:79031489-79031508 | None:intergenic | 25.0% |
!! | CTTGTGATTAGAACATTTTT+AGG | - | chr6_1:79031518-79031537 | Msa0894020:intron | 25.0% |
!!! | TGTGATTAGAACATTTTTAG+GGG | - | chr6_1:79031520-79031539 | Msa0894020:intron | 25.0% |
!! | TTTTGTTGAACTATTGTCTA+CGG | + | chr6_1:79031773-79031792 | None:intergenic | 25.0% |
! | CACAAATGATATCTTCAATT+GGG | - | chr6_1:79032041-79032060 | Msa0894020:CDS | 25.0% |
! | ATACTTGGAATGTTATATGA+GGG | - | chr6_1:79032432-79032451 | Msa0894020:intron | 25.0% |
! | TTATATGAGGGAATATGATA+TGG | - | chr6_1:79032444-79032463 | Msa0894020:intron | 25.0% |
! | ATATAAATGAGGAATGTCTT+AGG | - | chr6_1:79032521-79032540 | Msa0894020:intron | 25.0% |
! | GTTGGTTATTTGTTAGCAAT+AGG | - | chr6_1:79029032-79029051 | Msa0894020:intron | 30.0% |
! | TAGGATTTCCAACATTTTTG+AGG | - | chr6_1:79029072-79029091 | Msa0894020:intron | 30.0% |
! | AGGATTTCCAACATTTTTGA+GGG | - | chr6_1:79029073-79029092 | Msa0894020:intron | 30.0% |
TTAATTATACGATCCAAGTG+TGG | + | chr6_1:79029140-79029159 | None:intergenic | 30.0% | |
!!! | TGCATGTTTTGATTACATAC+AGG | - | chr6_1:79029338-79029357 | Msa0894020:CDS | 30.0% |
! | ATTGACTCAATATGTCGTTT+GGG | - | chr6_1:79029462-79029481 | Msa0894020:CDS | 30.0% |
! | CATTTTGAACAAAATCCTTG+TGG | + | chr6_1:79029536-79029555 | None:intergenic | 30.0% |
! | CACAAGGATTTTGTTCAAAA+TGG | - | chr6_1:79029534-79029553 | Msa0894020:CDS | 30.0% |
AATGGAGAAATAACTCTCAA+AGG | - | chr6_1:79029552-79029571 | Msa0894020:intron | 30.0% | |
ATAGCACAGAAATAGAATGA+AGG | + | chr6_1:79029581-79029600 | None:intergenic | 30.0% | |
TAAGTGGAGATATAAATACC+AGG | + | chr6_1:79029639-79029658 | None:intergenic | 30.0% | |
TTGAGTAAAACAAACTTGTG+TGG | - | chr6_1:79029703-79029722 | Msa0894020:intron | 30.0% | |
!! | GGATAATGGGTTGTTTAATA+TGG | + | chr6_1:79030003-79030022 | None:intergenic | 30.0% |
GATAACATTACACGGATAAT+GGG | + | chr6_1:79030016-79030035 | None:intergenic | 30.0% | |
AAGGTTCTTCCTTAATAAGA+TGG | + | chr6_1:79030098-79030117 | None:intergenic | 30.0% | |
AGATGTATTCAACCAATTCA+AGG | - | chr6_1:79030265-79030284 | Msa0894020:intron | 30.0% | |
AACATTGATCATAGATGTTG+AGG | - | chr6_1:79030310-79030329 | Msa0894020:intron | 30.0% | |
ACATTGATCATAGATGTTGA+GGG | - | chr6_1:79030311-79030330 | Msa0894020:intron | 30.0% | |
! | GATTCATGGTGAGAAAATTT+TGG | - | chr6_1:79030367-79030386 | Msa0894020:intron | 30.0% |
! | TTCCAAATTCCTTTTGATGT+AGG | + | chr6_1:79030610-79030629 | None:intergenic | 30.0% |
! | ATTTTAAATTAAGGAGGGTG+TGG | + | chr6_1:79030656-79030675 | None:intergenic | 30.0% |
CTAAAAAACTACCTTATGCA+CGG | - | chr6_1:79030761-79030780 | Msa0894020:intron | 30.0% | |
TAAAAAACTACCTTATGCAC+GGG | - | chr6_1:79030762-79030781 | Msa0894020:intron | 30.0% | |
!!! | AGTAGTAGAATGTTGCTTTT+GGG | - | chr6_1:79030789-79030808 | Msa0894020:intron | 30.0% |
TAGAGAAACTTCATGTAATC+CGG | + | chr6_1:79031244-79031263 | None:intergenic | 30.0% | |
!! | CTCTTACTTCTTTTAAGAAG+TGG | + | chr6_1:79031339-79031358 | None:intergenic | 30.0% |
! | TTCTAATCACAAGATTTGCT+AGG | + | chr6_1:79031511-79031530 | None:intergenic | 30.0% |
CAAAAAATACATAGGAGTTC+AGG | - | chr6_1:79031821-79031840 | Msa0894020:CDS | 30.0% | |
TAACTATATACCAACAACAG+AGG | - | chr6_1:79031939-79031958 | Msa0894020:CDS | 30.0% | |
AACACATCAACAATATCAAG+TGG | - | chr6_1:79031970-79031989 | Msa0894020:CDS | 30.0% | |
CCAATTGAAGATATCATTTG+TGG | + | chr6_1:79032043-79032062 | None:intergenic | 30.0% | |
CCACAAATGATATCTTCAAT+TGG | - | chr6_1:79032040-79032059 | Msa0894020:CDS | 30.0% | |
GTTTCACACAATATTCTTTG+TGG | - | chr6_1:79032162-79032181 | Msa0894020:intron | 30.0% | |
CATACTTGGAATGTTATATG+AGG | - | chr6_1:79032431-79032450 | Msa0894020:intron | 30.0% | |
!! | AAGCATTGTCAATTTTCTTG+TGG | + | chr6_1:79032495-79032514 | None:intergenic | 30.0% |
ACAAGAAAATTGACAATGCT+TGG | - | chr6_1:79032494-79032513 | Msa0894020:intron | 30.0% | |
TGCTTGGAAAGATATAAATG+AGG | - | chr6_1:79032510-79032529 | Msa0894020:intron | 30.0% | |
! | AAACGTAATGGAACTTTAGT+TGG | + | chr6_1:79032547-79032566 | None:intergenic | 30.0% |
GACAAGCAAATCATTAATGT+AGG | + | chr6_1:79032659-79032678 | None:intergenic | 30.0% | |
!! | ACCAAAGATTCTGAAGCATA+CGG | + | chr6_1:79028835-79028854 | None:intergenic | 35.0% |
!! | TAGCTCTACCTATTTTCTCT+TGG | + | chr6_1:79028994-79029013 | None:intergenic | 35.0% |
CTAACAAATAACCAACCCTT+TGG | + | chr6_1:79029028-79029047 | None:intergenic | 35.0% | |
TTAGCAATAGGAATGAAACC+TGG | - | chr6_1:79029044-79029063 | Msa0894020:intron | 35.0% | |
!! | TCCAACATTTTTGAGGGAAA+AGG | - | chr6_1:79029079-79029098 | Msa0894020:intron | 35.0% |
! | TCCTTTTCCCTCAAAAATGT+TGG | + | chr6_1:79029083-79029102 | None:intergenic | 35.0% |
! | GATTGACTCAATATGTCGTT+TGG | - | chr6_1:79029461-79029480 | Msa0894020:CDS | 35.0% |
!!! | AGTTTTGGAAGATATCCACA+AGG | - | chr6_1:79029518-79029537 | Msa0894020:CDS | 35.0% |
AAAATAGGAAGGATCATCGT+AGG | - | chr6_1:79029970-79029989 | Msa0894020:intron | 35.0% | |
GGATAACATTACACGGATAA+TGG | + | chr6_1:79030017-79030036 | None:intergenic | 35.0% | |
TATCCGTGTAATGTTATCCT+CGG | - | chr6_1:79030018-79030037 | Msa0894020:intron | 35.0% | |
TAATAAGATGGCTACCCTAT+AGG | + | chr6_1:79030086-79030105 | None:intergenic | 35.0% | |
ATAGGGTAGCCATCTTATTA+AGG | - | chr6_1:79030086-79030105 | Msa0894020:intron | 35.0% | |
!! | GTGGTTCTAGAGTATGAAAA+AGG | + | chr6_1:79030117-79030136 | None:intergenic | 35.0% |
ATGATTGTTCAACATTGTCG+TGG | - | chr6_1:79030224-79030243 | Msa0894020:intron | 35.0% | |
ACCATGAATCATCATATGTG+AGG | + | chr6_1:79030357-79030376 | None:intergenic | 35.0% | |
!! | TGGTGAGAAAATTTTGGAAG+AGG | - | chr6_1:79030373-79030392 | Msa0894020:intron | 35.0% |
!! | GAAAATTTTGGAAGAGGCAT+TGG | - | chr6_1:79030379-79030398 | Msa0894020:intron | 35.0% |
TCTACTTACGTTGGCAAAAT+TGG | - | chr6_1:79030565-79030584 | Msa0894020:CDS | 35.0% | |
! | ATTCCTTTTGATGTAGGCTT+TGG | + | chr6_1:79030604-79030623 | None:intergenic | 35.0% |
AGCCTACATCAAAAGGAATT+TGG | - | chr6_1:79030605-79030624 | Msa0894020:CDS | 35.0% | |
TGGTCTTTATATATAGGTGG+TGG | - | chr6_1:79030722-79030741 | Msa0894020:intron | 35.0% | |
!! | CTTTATATATAGGTGGTGGA+AGG | - | chr6_1:79030726-79030745 | Msa0894020:intron | 35.0% |
!!! | GAGTAGTAGAATGTTGCTTT+TGG | - | chr6_1:79030788-79030807 | Msa0894020:intron | 35.0% |
!!! | ATGTTGCTTTTGGGTTATGA+CGG | - | chr6_1:79030798-79030817 | Msa0894020:intron | 35.0% |
TTCCTTGCTTGACAATATTG+AGG | + | chr6_1:79030835-79030854 | None:intergenic | 35.0% | |
TAGGTGGGATATTAGTTGTT+TGG | - | chr6_1:79031210-79031229 | Msa0894020:intron | 35.0% | |
TAGTTGTTTGGATGATCTTC+CGG | - | chr6_1:79031222-79031241 | Msa0894020:intron | 35.0% | |
GTTTCTCTATAAACCACTCT+TGG | - | chr6_1:79031255-79031274 | Msa0894020:intron | 35.0% | |
TCTTCATAAACATCCAAGAG+TGG | + | chr6_1:79031271-79031290 | None:intergenic | 35.0% | |
ATAGTTAACATTCAACCACC+TGG | + | chr6_1:79031926-79031945 | None:intergenic | 35.0% | |
AACAATATCAAGTGGTTACC+CGG | - | chr6_1:79031978-79031997 | Msa0894020:CDS | 35.0% | |
TACGACTTCTTACATTGGAA+TGG | - | chr6_1:79032008-79032027 | Msa0894020:CDS | 35.0% | |
ACGACTTCTTACATTGGAAT+GGG | - | chr6_1:79032009-79032028 | Msa0894020:CDS | 35.0% | |
! | GCAGCAGCATTAACAATTTT+CGG | + | chr6_1:79032078-79032097 | None:intergenic | 35.0% |
AAACAGTTCGAGCAAAAAAG+AGG | - | chr6_1:79032397-79032416 | Msa0894020:intron | 35.0% | |
TTTCTTGTGGCATTCTTGAA+TGG | + | chr6_1:79032482-79032501 | None:intergenic | 35.0% | |
ACACACGTCAAAAAACGTAA+TGG | + | chr6_1:79032559-79032578 | None:intergenic | 35.0% | |
AAACCTCAATAAAACGCGAA+AGG | + | chr6_1:79032588-79032607 | None:intergenic | 35.0% | |
TCCGTATGCTTCAGAATCTT+TGG | - | chr6_1:79028831-79028850 | Msa0894020:CDS | 40.0% | |
AGCTATAGCAAACACTCCAA+AGG | - | chr6_1:79029009-79029028 | Msa0894020:CDS | 40.0% | |
GCTATAGCAAACACTCCAAA+GGG | - | chr6_1:79029010-79029029 | Msa0894020:CDS | 40.0% | |
! | GGAATGAAACCTGGTGTTTT+AGG | - | chr6_1:79029053-79029072 | Msa0894020:intron | 40.0% |
GTTGGAAATCCTAAAACACC+AGG | + | chr6_1:79029065-79029084 | None:intergenic | 40.0% | |
TTATACGATCCAAGTGTGGT+TGG | + | chr6_1:79029136-79029155 | None:intergenic | 40.0% | |
ACTAACATTGCACACTCCAA+AGG | - | chr6_1:79029176-79029195 | Msa0894020:intron | 40.0% | |
CTAACATTGCACACTCCAAA+GGG | - | chr6_1:79029177-79029196 | Msa0894020:intron | 40.0% | |
GTGAGTAACTTGAATCCCTT+TGG | + | chr6_1:79029195-79029214 | None:intergenic | 40.0% | |
CATGGTCTTTACATTTCACC+TGG | - | chr6_1:79029618-79029637 | Msa0894020:intron | 40.0% | |
GAACCGAGGATAACATTACA+CGG | + | chr6_1:79030024-79030043 | None:intergenic | 40.0% | |
! | ATTAGGCCGGTTTACCTATA+GGG | - | chr6_1:79030069-79030088 | Msa0894020:intron | 40.0% |
AACCAATTCAAGGACAAGCA+AGG | - | chr6_1:79030275-79030294 | Msa0894020:intron | 40.0% | |
TTCCTTGCTTGTCCTTGAAT+TGG | + | chr6_1:79030280-79030299 | None:intergenic | 40.0% | |
GCCTCACATATGATGATTCA+TGG | - | chr6_1:79030353-79030372 | Msa0894020:intron | 40.0% | |
! | ATTGGGTTGCAATTGACTCA+AGG | + | chr6_1:79030421-79030440 | None:intergenic | 40.0% |
CTTGCGACACAAGTCAAATA+TGG | - | chr6_1:79030452-79030471 | Msa0894020:intron | 40.0% | |
GGATGAATCTTGCTCATAGA+TGG | + | chr6_1:79030534-79030553 | None:intergenic | 40.0% | |
AGCCTCAATATTGTCAAGCA+AGG | - | chr6_1:79030830-79030849 | Msa0894020:CDS | 40.0% | |
TTGTCAAGCAAGGAAAGTGA+TGG | - | chr6_1:79030840-79030859 | Msa0894020:CDS | 40.0% | |
GATGACACGTATGATGCATA+CGG | - | chr6_1:79030892-79030911 | Msa0894020:CDS | 40.0% | |
GAGCAAGAAGTGAAGAAAGA+AGG | - | chr6_1:79031295-79031314 | Msa0894020:intron | 40.0% | |
GTATGTATCTATACGGAGAG+TGG | + | chr6_1:79031482-79031501 | None:intergenic | 40.0% | |
TTCATGTACTCCTCTGTTGT+TGG | + | chr6_1:79031952-79031971 | None:intergenic | 40.0% | |
TTGGCTACGACTTCTTACAT+TGG | - | chr6_1:79032003-79032022 | Msa0894020:CDS | 40.0% | |
! | AGGACATGTTGCTTCATACT+TGG | - | chr6_1:79032417-79032436 | Msa0894020:intron | 40.0% |
!! | CAACCTTTCGCGTTTTATTG+AGG | - | chr6_1:79032582-79032601 | Msa0894020:intron | 40.0% |
GACAACTACACACATTCTGA+AGG | - | chr6_1:79032622-79032641 | Msa0894020:CDS | 40.0% | |
AGATTTCCACCCTAGCGTTT+GGG | - | chr6_1:79028795-79028814 | Msa0894020:CDS | 45.0% | |
TAGCAAACACTCCAAAGGGT+TGG | - | chr6_1:79029014-79029033 | Msa0894020:CDS | 45.0% | |
ATTTGCACACCAACCACACT+TGG | - | chr6_1:79029124-79029143 | Msa0894020:intron | 45.0% | |
!! | CTGTGCTATTTAGGGTGTTG+AGG | - | chr6_1:79029592-79029611 | Msa0894020:intron | 45.0% |
!! | TTTAGGGTGTTGAGGCAACA+TGG | - | chr6_1:79029600-79029619 | Msa0894020:intron | 45.0% |
AGGAAGGATCATCGTAGGAT+CGG | - | chr6_1:79029975-79029994 | Msa0894020:intron | 45.0% | |
! | CATTAGGCCGGTTTACCTAT+AGG | - | chr6_1:79030068-79030087 | Msa0894020:intron | 45.0% |
TGGCTACCCTATAGGTAAAC+CGG | + | chr6_1:79030078-79030097 | None:intergenic | 45.0% | |
!!! | GAGGCATTGGCTTTTACTTC+TGG | - | chr6_1:79030392-79030411 | Msa0894020:intron | 45.0% |
CGCAAGAGAAGGACTCAATT+GGG | + | chr6_1:79030438-79030457 | None:intergenic | 45.0% | |
TCGCAAGAGAAGGACTCAAT+TGG | + | chr6_1:79030439-79030458 | None:intergenic | 45.0% | |
!! | TTGACTTGTGTCGCAAGAGA+AGG | + | chr6_1:79030449-79030468 | None:intergenic | 45.0% |
CAAAAACTTGCCTAGGCTAG+AGG | - | chr6_1:79030493-79030512 | Msa0894020:intron | 45.0% | |
GCTCCAAAGCCTACATCAAA+AGG | - | chr6_1:79030598-79030617 | Msa0894020:CDS | 45.0% | |
!! | ATATAGGTGGTGGAAGGAGT+TGG | - | chr6_1:79030732-79030751 | Msa0894020:intron | 45.0% |
AGTCCAAGCTTACATGAGTG+AGG | - | chr6_1:79031900-79031919 | Msa0894020:CDS | 45.0% | |
TAAGAAGTCGTAGCCAACAC+CGG | + | chr6_1:79032000-79032019 | None:intergenic | 45.0% | |
TGCTGTTCATTGCAGGCTTA+GGG | - | chr6_1:79032095-79032114 | Msa0894020:intron | 45.0% | |
GGATGAAATTGTGTCTAGCG+AGG | - | chr6_1:79032116-79032135 | Msa0894020:intron | 45.0% | |
!! | ATATATATATATATATTACA+AGG | + | chr6_1:79029223-79029242 | None:intergenic | 5.0% |
!!! | TCATTTTTTATATTTTAATT+TGG | - | chr6_1:79029673-79029692 | Msa0894020:intron | 5.0% |
!!! | TTCAATTTAATTTTAAATTA+AGG | + | chr6_1:79030665-79030684 | None:intergenic | 5.0% |
!!! | AAAATTAAATAATAACTTTT+AGG | - | chr6_1:79031069-79031088 | Msa0894020:CDS | 5.0% |
!! | TTTAAAAAAAGATTATATAT+TGG | - | chr6_1:79031735-79031754 | Msa0894020:intron | 5.0% |
CAGATTTCCACCCTAGCGTT+TGG | - | chr6_1:79028794-79028813 | Msa0894020:CDS | 50.0% | |
GATTTCCACCCTAGCGTTTG+GGG | - | chr6_1:79028796-79028815 | Msa0894020:CDS | 50.0% | |
ATTTCCACCCTAGCGTTTGG+GGG | - | chr6_1:79028797-79028816 | Msa0894020:CDS | 50.0% | |
! | GGGTTGCAATTGACTCAAGG+TGG | + | chr6_1:79030418-79030437 | None:intergenic | 50.0% |
! | CTAGGCAAGTTTTTGCGCAG+AGG | + | chr6_1:79030488-79030507 | None:intergenic | 50.0% |
CTCTGCGCAAAAACTTGCCT+AGG | - | chr6_1:79030486-79030505 | Msa0894020:intron | 50.0% | |
TAGCTTCTTGCCTCTAGCCT+AGG | + | chr6_1:79030506-79030525 | None:intergenic | 50.0% | |
ACTACTCTGTCCCGTGCATA+AGG | + | chr6_1:79030775-79030794 | None:intergenic | 50.0% | |
TGGCCTCACTCATGTAAGCT+TGG | + | chr6_1:79031906-79031925 | None:intergenic | 50.0% | |
AAGCTTACATGAGTGAGGCC+AGG | - | chr6_1:79031905-79031924 | Msa0894020:CDS | 50.0% | |
ATCAAGTGGTTACCCGGTGT+TGG | - | chr6_1:79031984-79032003 | Msa0894020:CDS | 50.0% | |
AAGAAGTCGTAGCCAACACC+GGG | + | chr6_1:79031999-79032018 | None:intergenic | 50.0% | |
ATGCTGCTGCTGTTCATTGC+AGG | - | chr6_1:79032088-79032107 | Msa0894020:intron | 50.0% | |
CTGCTGTTCATTGCAGGCTT+AGG | - | chr6_1:79032094-79032113 | Msa0894020:intron | 50.0% | |
TTTCCACCCTAGCGTTTGGG+GGG | - | chr6_1:79028798-79028817 | Msa0894020:CDS | 55.0% | |
AGAAGTCCCCCCAAACGCTA+GGG | + | chr6_1:79028807-79028826 | None:intergenic | 55.0% | |
AAGAAGTCCCCCCAAACGCT+AGG | + | chr6_1:79028808-79028827 | None:intergenic | 55.0% | |
CTTACATGAGTGAGGCCAGG+TGG | - | chr6_1:79031908-79031927 | Msa0894020:CDS | 55.0% | |
AGTCCCCCCAAACGCTAGGG+TGG | + | chr6_1:79028804-79028823 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_1 | gene | 79028754 | 79032696 | 79028754 | ID=Msa0894020;Name=Msa0894020 |
chr6_1 | mRNA | 79028754 | 79032696 | 79028754 | ID=Msa0894020-mRNA-1;Parent=Msa0894020;Name=Msa0894020-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|7|0|550 |
chr6_1 | exon | 79032598 | 79032696 | 79032598 | ID=Msa0894020-mRNA-1:exon:13243;Parent=Msa0894020-mRNA-1 |
chr6_1 | exon | 79031811 | 79032090 | 79031811 | ID=Msa0894020-mRNA-1:exon:13242;Parent=Msa0894020-mRNA-1 |
chr6_1 | exon | 79030811 | 79031183 | 79030811 | ID=Msa0894020-mRNA-1:exon:13241;Parent=Msa0894020-mRNA-1 |
chr6_1 | exon | 79030494 | 79030712 | 79030494 | ID=Msa0894020-mRNA-1:exon:13240;Parent=Msa0894020-mRNA-1 |
chr6_1 | exon | 79030099 | 79030237 | 79030099 | ID=Msa0894020-mRNA-1:exon:13239;Parent=Msa0894020-mRNA-1 |
chr6_1 | exon | 79029313 | 79029561 | 79029313 | ID=Msa0894020-mRNA-1:exon:13238;Parent=Msa0894020-mRNA-1 |
chr6_1 | exon | 79028754 | 79029047 | 79028754 | ID=Msa0894020-mRNA-1:exon:13237;Parent=Msa0894020-mRNA-1 |
chr6_1 | CDS | 79032598 | 79032696 | 79032598 | ID=Msa0894020-mRNA-1:cds;Parent=Msa0894020-mRNA-1 |
chr6_1 | CDS | 79031811 | 79032090 | 79031811 | ID=Msa0894020-mRNA-1:cds;Parent=Msa0894020-mRNA-1 |
chr6_1 | CDS | 79030811 | 79031183 | 79030811 | ID=Msa0894020-mRNA-1:cds;Parent=Msa0894020-mRNA-1 |
chr6_1 | CDS | 79030494 | 79030712 | 79030494 | ID=Msa0894020-mRNA-1:cds;Parent=Msa0894020-mRNA-1 |
chr6_1 | CDS | 79030099 | 79030237 | 79030099 | ID=Msa0894020-mRNA-1:cds;Parent=Msa0894020-mRNA-1 |
chr6_1 | CDS | 79029313 | 79029561 | 79029313 | ID=Msa0894020-mRNA-1:cds;Parent=Msa0894020-mRNA-1 |
chr6_1 | CDS | 79028754 | 79029047 | 79028754 | ID=Msa0894020-mRNA-1:cds;Parent=Msa0894020-mRNA-1 |
Gene Sequence |
Protein sequence |