AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0894020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0894020 MtrunA17_Chr7g0236991 68.306 549 174 0 1 549 4 552 0.0 810
Msa0894020 MtrunA17_Chr6g0465441 68.488 549 173 0 1 549 4 552 0.0 809
Msa0894020 MtrunA17_Chr7g0237001 68.124 549 175 0 1 549 4 552 0.0 808
Msa0894020 MtrunA17_Chr7g0237041 68.124 549 175 0 1 549 4 552 0.0 808
Msa0894020 MtrunA17_Chr7g0237081 68.124 549 175 0 1 549 4 552 0.0 808
Msa0894020 MtrunA17_Chr7g0237051 68.124 549 175 0 1 549 4 552 0.0 808
Msa0894020 MtrunA17_Chr5g0425371 70.741 540 158 0 10 549 13 552 0.0 805
Msa0894020 MtrunA17_Chr6g0465911 68.124 549 175 0 1 549 4 552 0.0 795
Msa0894020 MtrunA17_Chr6g0466051 67.942 549 176 0 1 549 4 552 0.0 793
Msa0894020 MtrunA17_Chr4g0024691 68.566 544 171 0 6 549 17 560 0.0 785
Msa0894020 MtrunA17_Chr6g0451711 66.667 549 182 1 2 549 8 556 0.0 783
Msa0894020 MtrunA17_Chr3g0105071 66.120 549 185 1 1 548 7 555 0.0 767
Msa0894020 MtrunA17_Chr3g0082691 65.036 552 190 2 1 549 1 552 0.0 755
Msa0894020 MtrunA17_Chr6g0465851 69.052 517 160 0 33 549 1 517 0.0 754
Msa0894020 MtrunA17_Chr5g0431651 64.428 551 194 2 1 549 1 551 0.0 743
Msa0894020 MtrunA17_Chr7g0236961 69.416 497 152 0 53 549 1 497 0.0 743
Msa0894020 MtrunA17_Chr7g0237011 69.416 497 152 0 53 549 1 497 0.0 741
Msa0894020 MtrunA17_Chr5g0431571 65.441 544 187 1 6 548 4 547 0.0 736
Msa0894020 MtrunA17_Chr4g0042111 58.212 548 226 2 4 549 15 561 0.0 664
Msa0894020 MtrunA17_Chr7g0236971 69.500 400 122 0 150 549 1 400 0.0 605
Msa0894020 MtrunA17_Chr6g0465981 68.919 370 115 0 1 370 4 373 0.0 543
Msa0894020 MtrunA17_Chr6g0465871 68.919 370 115 0 1 370 4 373 0.0 543
Msa0894020 MtrunA17_Chr6g0466081 68.919 370 115 0 1 370 4 373 0.0 543
Msa0894020 MtrunA17_Chr6g0465931 70.414 338 100 0 33 370 1 338 5.65e-177 502
Msa0894020 MtrunA17_Chr6g0466111 70.414 338 100 0 33 370 1 338 1.09e-176 501
Msa0894020 MtrunA17_Chr2g0319041 45.421 546 290 7 9 548 12 555 2.93e-174 504
Msa0894020 MtrunA17_Chr8g0336181 46.168 548 287 6 7 548 9 554 6.58e-172 498
Msa0894020 MtrunA17_Chr7g0236951 70.476 315 93 0 53 367 1 315 3.63e-168 479
Msa0894020 MtrunA17_Chr7g0237031 70.476 315 93 0 53 367 1 315 9.47e-168 478
Msa0894020 MtrunA17_Chr2g0319051 45.401 511 273 6 42 548 4 512 2.78e-164 477
Msa0894020 MtrunA17_Chr4g0008621 46.250 400 211 4 9 404 19 418 3.83e-125 374
Msa0894020 MtrunA17_Chr6g0466031 65.251 259 90 0 291 549 1 259 3.51e-121 357
Msa0894020 MtrunA17_Chr5g0445511 66.946 239 79 0 145 383 1 239 1.33e-117 347
Msa0894020 MtrunA17_Chr2g0319071 38.104 517 270 10 38 550 19 489 7.98e-116 352
Msa0894020 MtrunA17_Chr4g0023911 34.615 546 346 4 7 548 41 579 2.24e-113 348
Msa0894020 MtrunA17_Chr7g0237061 60.232 259 80 2 291 549 1 236 6.04e-107 320
Msa0894020 MtrunA17_Chr2g0323131 36.117 515 306 9 43 550 67 565 7.28e-107 331
Msa0894020 MtrunA17_Chr2g0310331 35.675 541 338 6 11 549 53 585 1.20e-106 331
Msa0894020 MtrunA17_Chr2g0323151 35.583 489 298 5 65 549 4 479 3.40e-104 322
Msa0894020 MtrunA17_Chr8g0357411 33.394 551 358 5 1 549 45 588 2.15e-95 302
Msa0894020 MtrunA17_Chr7g0237071 69.307 202 62 0 53 254 1 202 1.76e-94 287
Msa0894020 MtrunA17_Chr6g0466021 66.162 198 67 0 1 198 4 201 6.42e-91 277
Msa0894020 MtrunA17_Chr4g0048921 32.233 515 336 6 38 548 64 569 2.75e-86 278
Msa0894020 MtrunA17_Chr4g0048911 30.769 546 366 9 2 542 18 556 3.93e-84 272
Msa0894020 MtrunA17_Chr7g0237021 68.421 171 54 0 379 549 1 171 1.24e-83 257
Msa0894020 MtrunA17_Chr7g0236941 68.421 171 54 0 379 549 1 171 1.24e-83 257
Msa0894020 MtrunA17_Chr6g0465941 66.082 171 58 0 379 549 1 171 1.22e-78 244
Msa0894020 MtrunA17_Chr6g0466121 66.082 171 58 0 379 549 1 171 1.22e-78 244
Msa0894020 MtrunA17_Chr6g0465991 66.082 171 58 0 379 549 1 171 1.22e-78 244
Msa0894020 MtrunA17_Chr6g0466091 66.082 171 58 0 379 549 1 171 1.22e-78 244
Msa0894020 MtrunA17_Chr6g0465881 65.497 171 59 0 379 549 1 171 6.85e-78 243
Msa0894020 MtrunA17_Chr2g0319081 39.815 324 176 7 228 548 118 425 1.33e-74 243
Msa0894020 MtrunA17_Chr2g0319081 40.164 122 72 1 9 129 19 140 8.00e-23 101
Msa0894020 MtrunA17_Chr5g0445501 61.404 171 66 0 379 549 1 171 1.26e-72 229
Msa0894020 MtrunA17_Chr2g0280581 28.952 525 346 9 36 541 2 518 1.45e-72 240
Msa0894020 MtrunA17_Chr2g0310401 32.477 428 286 2 124 549 5 431 8.50e-72 236
Msa0894020 MtrunA17_Chr7g0236921 64.331 157 52 1 397 549 1 157 1.30e-69 221
Msa0894020 MtrunA17_Chr6g0477111 29.938 481 313 8 67 532 6 477 5.80e-68 228
Msa0894020 MtrunA17_Chr3g0109001 29.713 488 318 8 57 528 21 499 6.21e-68 228
Msa0894020 MtrunA17_Chr3g0108941 28.850 513 337 10 48 544 13 513 3.55e-67 226
Msa0894020 MtrunA17_Chr3g0109021 29.839 496 323 9 48 528 13 498 7.76e-67 225
Msa0894020 MtrunA17_Chr3g0109031 29.184 490 334 8 48 528 13 498 4.03e-66 223
Msa0894020 MtrunA17_Chr3g0108991 29.637 496 324 9 48 528 13 498 7.78e-66 223
Msa0894020 MtrunA17_Chr3g0108951 29.637 496 324 9 48 528 13 498 7.78e-66 223
Msa0894020 MtrunA17_Chr3g0108981 29.350 477 314 6 67 528 6 474 8.45e-66 222
Msa0894020 MtrunA17_Chr3g0108961 29.350 477 314 6 67 528 6 474 8.45e-66 222
Msa0894020 MtrunA17_Chr7g0236931 62.745 153 54 1 397 549 1 150 1.61e-65 209
Msa0894020 MtrunA17_Chr3g0105691 29.388 490 333 7 48 528 46 531 3.86e-65 221
Msa0894020 MtrunA17_Chr3g0108971 29.560 477 312 8 67 528 6 473 1.41e-64 218
Msa0894020 MtrunA17_Chr3g0109011 29.350 477 313 8 67 528 6 473 2.01e-64 218
Msa0894020 MtrunA17_Chr3g0099031 29.020 510 339 9 48 544 13 512 6.04e-62 212
Msa0894020 MtrunA17_Chr6g0477121 29.024 410 280 6 127 528 10 416 2.04e-55 192
Msa0894020 MtrunA17_Chr7g0233861 63.704 135 40 1 190 324 33 158 5.89e-52 175
Msa0894020 MtrunA17_Chr7g0236981 58.915 129 53 0 1 129 4 132 3.18e-50 169
Msa0894020 MtrunA17_Chr7g0217361 33.333 300 199 1 249 547 8 307 8.27e-50 174
Msa0894020 MtrunA17_Chr8g0357221 37.959 245 143 5 3 245 47 284 9.01e-42 152
Msa0894020 MtrunA17_Chr5g0445401 71.579 95 23 2 160 251 1 94 4.76e-35 127
Msa0894020 MtrunA17_Chr8g0357231 29.730 259 180 2 292 549 1 258 1.53e-33 128
Msa0894020 MtrunA17_Chr2g0310121 24.225 516 349 15 64 548 275 779 1.92e-32 132
Msa0894020 MtrunA17_Chr3g0101681 25.430 523 334 17 64 548 276 780 2.55e-32 132
Msa0894020 MtrunA17_Chr3g0082711 48.696 115 42 1 435 549 1 98 3.31e-32 119
Msa0894020 MtrunA17_Chr5g0445521 65.060 83 29 0 6 88 12 94 5.25e-31 116
Msa0894020 MtrunA17_Chr7g0259881 28.623 276 167 7 60 307 225 498 1.33e-26 114
Msa0894020 MtrunA17_Chr7g0218001 30.686 277 158 7 60 304 342 616 2.69e-25 110
Msa0894020 MtrunA17_Chr7g0217351 27.778 216 149 4 40 252 62 273 8.41e-21 93.2
Msa0894020 MtrunA17_Chr2g0281651 25.725 276 196 6 227 499 43 312 1.16e-18 88.6
Msa0894020 MtrunA17_Chr7g0218041 31.667 240 137 7 114 328 3 240 1.34e-17 85.5
Msa0894020 MtrunA17_Chr2g0310411 33.600 125 73 4 2 125 49 164 3.93e-14 70.5
Msa0894020 MtrunA17_Chr5g0411111 38.889 126 62 5 114 228 3 124 5.28e-14 68.9
Msa0894020 MtrunA17_Chr8g0370481 29.688 192 102 7 126 285 4 194 7.51e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0894020 AT5G23960.2 40.110 546 320 5 7 549 3 544 1.01e-149 441
Msa0894020 AT5G23960.1 40.146 548 319 6 7 549 3 546 6.43e-149 439
Msa0894020 AT1G70080.1 38.278 546 327 7 11 548 66 609 8.33e-126 382
Msa0894020 AT3G14490.1 37.912 546 327 7 11 549 60 600 1.15e-121 371
Msa0894020 AT3G14520.1 36.735 539 333 5 16 549 68 603 6.06e-121 369
Msa0894020 AT1G31950.1 36.178 539 336 4 16 549 70 605 1.37e-119 366
Msa0894020 AT3G14540.1 36.920 539 332 4 16 549 65 600 5.77e-119 364
Msa0894020 AT1G31950.3 36.044 541 335 6 16 549 70 606 6.92e-119 364
Msa0894020 AT5G44630.1 35.780 545 339 6 12 548 14 555 6.72e-113 347
Msa0894020 AT1G33750.1 34.831 534 342 4 18 549 73 602 1.09e-112 348
Msa0894020 AT3G32030.1 35.065 539 342 6 16 549 68 603 2.02e-112 347
Msa0894020 AT3G29410.1 34.807 543 346 6 11 549 64 602 1.51e-110 342
Msa0894020 AT4G13300.1 36.685 537 329 7 19 548 20 552 1.97e-110 340
Msa0894020 AT4G20210.1 34.432 546 345 7 11 548 58 598 6.83e-109 338
Msa0894020 AT4G20200.1 36.100 518 313 9 42 548 92 602 2.11e-108 337
Msa0894020 AT4G15870.1 34.657 554 336 9 3 548 61 596 4.93e-107 333
Msa0894020 AT3G29190.1 34.766 535 323 9 32 549 75 600 2.31e-106 331
Msa0894020 AT3G29410.2 35.000 500 319 4 53 549 1 497 2.01e-104 323
Msa0894020 AT4G13280.2 35.888 535 332 7 21 548 22 552 2.03e-104 325
Msa0894020 AT4G20230.2 33.826 541 336 9 19 546 82 613 5.17e-100 315
Msa0894020 AT4G20230.1 33.826 541 336 9 19 546 70 601 7.16e-100 315
Msa0894020 AT3G14540.2 37.444 446 272 3 16 457 65 507 1.29e-99 311
Msa0894020 AT1G31950.2 36.105 457 281 6 16 465 70 522 2.38e-99 311
Msa0894020 AT4G16730.1 31.423 541 354 7 22 549 2 538 7.59e-98 307
Msa0894020 AT3G29110.1 34.066 546 347 8 11 548 55 595 1.61e-97 308
Msa0894020 AT2G23230.2 33.700 546 347 9 10 545 55 595 5.91e-97 307
Msa0894020 AT2G23230.1 33.516 546 343 10 10 545 55 590 2.02e-94 300
Msa0894020 AT1G66020.1 32.721 544 357 6 11 548 56 596 2.22e-94 300
Msa0894020 AT4G16730.2 31.717 495 323 5 67 549 1 492 6.85e-94 296
Msa0894020 AT4G13280.1 34.766 535 308 9 21 548 22 522 5.66e-93 294
Msa0894020 AT1G48800.1 31.685 546 357 9 11 546 63 602 8.65e-93 296
Msa0894020 AT2G24210.1 31.362 558 364 9 4 549 39 589 3.14e-90 289
Msa0894020 AT4G16740.1 31.171 555 359 10 6 549 21 563 2.72e-88 283
Msa0894020 AT3G25820.1 31.239 557 359 11 9 549 45 593 3.34e-87 281
Msa0894020 AT3G25830.1 31.239 557 359 11 9 549 45 593 3.34e-87 281
Msa0894020 AT1G61680.1 31.781 494 319 4 48 528 69 557 4.27e-85 275
Msa0894020 AT5G48110.1 37.941 340 206 5 210 548 2 337 9.44e-85 267
Msa0894020 AT3G25810.1 30.605 562 359 11 9 549 45 596 1.21e-84 275
Msa0894020 AT1G61680.2 31.377 494 314 5 48 528 69 550 7.72e-82 266
Msa0894020 AT1G48820.1 31.169 539 321 11 11 543 63 557 2.91e-81 265
Msa0894020 AT4G16740.2 35.393 356 212 6 6 351 21 368 2.54e-68 226
Msa0894020 AT1G66020.2 34.688 369 232 6 11 373 56 421 7.01e-65 218
Msa0894020 AT3G25820.2 32.208 385 244 7 9 383 45 422 4.44e-64 216
Msa0894020 AT4G16740.4 35.258 329 195 6 6 324 21 341 2.47e-60 204
Msa0894020 AT4G16740.3 35.258 329 195 6 6 324 21 341 2.47e-60 204
Msa0894020 AT3G25820.4 33.436 326 200 7 9 324 45 363 5.90e-55 191
Msa0894020 AT3G25820.3 33.436 326 200 7 9 324 45 363 5.90e-55 191
Msa0894020 AT1G61120.1 23.930 514 347 13 62 548 286 782 6.06e-28 119
Msa0894020 AT1G79460.1 23.608 521 345 19 64 548 274 777 1.16e-25 112
Msa0894020 AT4G02780.1 29.963 267 149 8 60 294 327 587 1.21e-24 108

Find 95 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTACGTTGGCAAAAT+TGG 0.135143 6_1:-79030863 Msa0894020:CDS
ATTCTATTTCTGTGCTATTT+AGG 0.140011 6_1:-79031845 Msa0894020:CDS
TTCTATTTCTGTGCTATTTA+GGG 0.183039 6_1:-79031844 Msa0894020:CDS
CTGCTGTTCATTGCAGGCTT+AGG 0.241228 6_1:-79029334 Msa0894020:CDS
AGCCTACATCAAAAGGAATT+TGG 0.257080 6_1:-79030823 Msa0894020:CDS
ACGTAAGTAGAATTTCATTA+TGG 0.259315 6_1:+79030875 None:intergenic
GATTCATGGTGAGAAAATTT+TGG 0.259321 6_1:-79031061 Msa0894020:CDS
TCCGTATGCTTCAGAATCTT+TGG 0.269105 6_1:-79032597 Msa0894020:intron
GTCATCAATGTATGATAAAA+TGG 0.271835 6_1:+79030553 None:intergenic
ATGCTGCTGCTGTTCATTGC+AGG 0.286868 6_1:-79029340 Msa0894020:CDS
CTTGCGACACAAGTCAAATA+TGG 0.304641 6_1:-79030976 Msa0894020:CDS
CAGATTTCCACCCTAGCGTT+TGG 0.305039 6_1:-79032634 Msa0894020:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.318717 6_1:-79032633 Msa0894020:CDS
AGACGAAATTAATCAAGTTT+TGG 0.321368 6_1:-79031925 Msa0894020:CDS
TTCCTTGCTTGTCCTTGAAT+TGG 0.334271 6_1:+79031151 None:intergenic
TAGTTGTTTGGATGATCTTC+CGG 0.341349 6_1:-79030206 Msa0894020:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6_1:-79030640 Msa0894020:CDS
TTATATGAGGGAATATGATA+TGG 0.360767 6_1:-79028984 Msa0894020:CDS
CCAATTGAAGATATCATTTG+TGG 0.372281 6_1:+79029388 None:intergenic
TTCATGTACTCCTCTGTTGT+TGG 0.374525 6_1:+79029479 None:intergenic
TGCTGTTCATTGCAGGCTTA+GGG 0.376798 6_1:-79029333 Msa0894020:CDS
CCACAAATGATATCTTCAAT+TGG 0.377027 6_1:-79029388 Msa0894020:CDS
CGTAAGTAGAATTTCATTAT+GGG 0.378944 6_1:+79030876 None:intergenic
AAACGTAATGGAACTTTAGT+TGG 0.382677 6_1:+79028884 None:intergenic
TAGGTGGGATATTAGTTGTT+TGG 0.387739 6_1:-79030218 Msa0894020:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6_1:+79030897 None:intergenic
GATTGACTCAATATGTCGTT+TGG 0.390339 6_1:-79031967 Msa0894020:CDS
CATACTTGGAATGTTATATG+AGG 0.398446 6_1:-79028997 Msa0894020:CDS
AGGACATGTTGCTTCATACT+TGG 0.399041 6_1:-79029011 Msa0894020:CDS
ATATAAATGAGGAATGTCTT+AGG 0.410838 6_1:-79028907 Msa0894020:CDS
TCGCAAGAGAAGGACTCAAT+TGG 0.412353 6_1:+79030992 None:intergenic
TAGAGAAACTTCATGTAATC+CGG 0.427919 6_1:+79030187 None:intergenic
GTTTCTCTATAAACCACTCT+TGG 0.439981 6_1:-79030173 Msa0894020:CDS
ACAAGAAAATTGACAATGCT+TGG 0.444020 6_1:-79028934 Msa0894020:CDS
TTTCTTGTGGCATTCTTGAA+TGG 0.445959 6_1:+79028949 None:intergenic
GCTCCAAAGCCTACATCAAA+AGG 0.450495 6_1:-79030830 Msa0894020:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6_1:-79029420 Msa0894020:CDS
CACAAATGATATCTTCAATT+GGG 0.456797 6_1:-79029387 Msa0894020:CDS
ACTACTCTGTCCCGTGCATA+AGG 0.457542 6_1:+79030656 None:intergenic
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_1:-79029419 Msa0894020:CDS
GCCTCACATATGATGATTCA+TGG 0.465433 6_1:-79031075 Msa0894020:CDS
ATTGACTCAATATGTCGTTT+GGG 0.473862 6_1:-79031966 Msa0894020:CDS
ACCAAAATCAATGCTCATGT+TGG 0.476318 6_1:+79028740 None:intergenic
AGATGTATTCAACCAATTCA+AGG 0.477088 6_1:-79031163 Msa0894020:CDS
GAGCAAGAAGTGAAGAAAGA+AGG 0.477567 6_1:-79030133 Msa0894020:CDS
TTCCTTGCTTGACAATATTG+AGG 0.480415 6_1:+79030596 None:intergenic
CGCAAGAGAAGGACTCAATT+GGG 0.484801 6_1:+79030993 None:intergenic
CCAAAATCAATGCTCATGTT+GGG 0.485248 6_1:+79028741 None:intergenic
CATGGTCTTTACATTTCACC+TGG 0.512141 6_1:-79031810 Msa0894020:intron
AACATTGATCATAGATGTTG+AGG 0.512550 6_1:-79031118 Msa0894020:CDS
AACAATATCAAGTGGTTACC+CGG 0.513550 6_1:-79029450 Msa0894020:CDS
ATCAATGCTCATGTTGGGAT+GGG 0.522554 6_1:+79028746 None:intergenic
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6_1:-79030696 Msa0894020:intron
AGCCTCAATATTGTCAAGCA+AGG 0.528176 6_1:-79030598 Msa0894020:CDS
CTGTGCTATTTAGGGTGTTG+AGG 0.528533 6_1:-79031836 Msa0894020:CDS
AATCAATGCTCATGTTGGGA+TGG 0.533171 6_1:+79028745 None:intergenic
TGGCCTCACTCATGTAAGCT+TGG 0.536408 6_1:+79029525 None:intergenic
ATCAAGTGGTTACCCGGTGT+TGG 0.539295 6_1:-79029444 Msa0894020:CDS
TTGACTTGTGTCGCAAGAGA+AGG 0.540007 6_1:+79030982 None:intergenic
GATTTCCACCCTAGCGTTTG+GGG 0.542721 6_1:-79032632 Msa0894020:CDS
GCAAATTGATAAACTAAAAG+AGG 0.546970 6_1:-79032045 Msa0894020:CDS
TAGCTTCTTGCCTCTAGCCT+AGG 0.554871 6_1:+79030925 None:intergenic
ATACTTGGAATGTTATATGA+GGG 0.559157 6_1:-79028996 Msa0894020:CDS
GACAAGCAAATCATTAATGT+AGG 0.560101 6_1:+79028772 None:intergenic
GGAATTTGATATAAATATTG+CGG 0.567112 6_1:-79032069 Msa0894020:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.568035 6_1:-79031828 Msa0894020:CDS
AATGGAGAAATAACTCTCAA+AGG 0.571243 6_1:-79031876 Msa0894020:CDS
TTGGCTACGACTTCTTACAT+TGG 0.575246 6_1:-79029425 Msa0894020:CDS
AAGCTTACATGAGTGAGGCC+AGG 0.576657 6_1:-79029523 Msa0894020:CDS
ATAGCACAGAAATAGAATGA+AGG 0.580450 6_1:+79031850 None:intergenic
GATGACACGTATGATGCATA+CGG 0.587584 6_1:-79030536 Msa0894020:CDS
TAAGAAGTCGTAGCCAACAC+CGG 0.589439 6_1:+79029431 None:intergenic
AAGAAGTCGTAGCCAACACC+GGG 0.590372 6_1:+79029432 None:intergenic
ACCAAAGATTCTGAAGCATA+CGG 0.593001 6_1:+79032596 None:intergenic
ATTGGGTTGCAATTGACTCA+AGG 0.594526 6_1:+79031010 None:intergenic
AACACATCAACAATATCAAG+TGG 0.595383 6_1:-79029458 Msa0894020:CDS
TCTTCATAAACATCCAAGAG+TGG 0.597368 6_1:+79030160 None:intergenic
TTGTCAAGCAAGGAAAGTGA+TGG 0.598035 6_1:-79030588 Msa0894020:CDS
ACATTGATCATAGATGTTGA+GGG 0.599537 6_1:-79031117 Msa0894020:CDS
GACAACTACACACATTCTGA+AGG 0.603730 6_1:-79028806 Msa0894020:CDS
TTTCCACCCTAGCGTTTGGG+GGG 0.604138 6_1:-79032630 Msa0894020:CDS
TAATGAAATTCTACTTACGT+TGG 0.604203 6_1:-79030872 Msa0894020:CDS
AACCAATTCAAGGACAAGCA+AGG 0.604565 6_1:-79031153 Msa0894020:CDS
CTTTATATATAGGTGGTGGA+AGG 0.614852 6_1:-79030702 Msa0894020:intron
ATTTCCACCCTAGCGTTTGG+GGG 0.619288 6_1:-79032631 Msa0894020:CDS
AAACCTCAATAAAACGCGAA+AGG 0.623927 6_1:+79028843 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 6_1:-79028918 Msa0894020:CDS
ACCATGAATCATCATATGTG+AGG 0.641340 6_1:+79031074 None:intergenic
AATTGATAAACTAAAAGAGG+AGG 0.642973 6_1:-79032042 Msa0894020:CDS
ATAGTTAACATTCAACCACC+TGG 0.654774 6_1:+79029505 None:intergenic
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6_1:-79029312 Msa0894020:intron
AGTCCAAGCTTACATGAGTG+AGG 0.665674 6_1:-79029528 Msa0894020:CDS
GGGTTGCAATTGACTCAAGG+TGG 0.669237 6_1:+79031013 None:intergenic
CTTACATGAGTGAGGCCAGG+TGG 0.678940 6_1:-79029520 Msa0894020:CDS
TAACTATATACCAACAACAG+AGG 0.706002 6_1:-79029489 Msa0894020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATAAACATCTAAAAAA+TGG - chr6_1:79029823-79029842 Msa0894020:intron 10.0%
!!! ATTATATTTTTGATATCATT+AGG - chr6_1:79030052-79030071 Msa0894020:intron 10.0%
!!! ATTTAATTTTAAATTAAGGA+GGG + chr6_1:79030661-79030680 None:intergenic 10.0%
!!! AATTTAATTTTAAATTAAGG+AGG + chr6_1:79030662-79030681 None:intergenic 10.0%
!!! TTTTATCATATATTTATACA+CGG - chr6_1:79031134-79031153 Msa0894020:CDS 10.0%
!! GAATCATTAATATAAATAAG+TGG + chr6_1:79029655-79029674 None:intergenic 15.0%
!!! TAATTTTTTAACTTTGATCA+TGG - chr6_1:79029792-79029811 Msa0894020:intron 15.0%
!!! AATTTTTTAACTTTGATCAT+GGG - chr6_1:79029793-79029812 Msa0894020:intron 15.0%
!!! TGATTGTTTTTACATAAAAT+AGG - chr6_1:79029955-79029974 Msa0894020:intron 15.0%
!! ATAAAGACCAAAAATATTAT+AGG + chr6_1:79030712-79030731 None:intergenic 15.0%
!!! TATTTTTGGTCTTTATATAT+AGG - chr6_1:79030716-79030735 Msa0894020:intron 15.0%
!!! ATTAAATAATAACTTTTAGG+TGG - chr6_1:79031072-79031091 Msa0894020:CDS 15.0%
!!! TTGTAATGAAAATGAATTTT+AGG - chr6_1:79031191-79031210 Msa0894020:intron 15.0%
!!! TAAAATTTTATTCTGATAAC+AGG + chr6_1:79031444-79031463 None:intergenic 15.0%
!!! TGTTATCAGAATAAAATTTT+AGG - chr6_1:79031443-79031462 Msa0894020:intron 15.0%
!! CATATTTACAAAAAATACAT+AGG - chr6_1:79031813-79031832 Msa0894020:CDS 15.0%
!! AATATAGTAGAATTGTTAAT+AGG + chr6_1:79031854-79031873 None:intergenic 15.0%
!! TATTATATTAACTCTTAAGA+CGG + chr6_1:79032278-79032297 None:intergenic 15.0%
!! AATATAATAAGATGACATAA+TGG - chr6_1:79032289-79032308 Msa0894020:intron 15.0%
!! TATGTTATGAAAAGTGATTA+AGG - chr6_1:79028923-79028942 Msa0894020:CDS 20.0%
!! GTAAAAAGATCCTATATTAT+TGG + chr6_1:79029259-79029278 None:intergenic 20.0%
!!! ACACTTAATTGTTATTTGAA+AGG + chr6_1:79029291-79029310 None:intergenic 20.0%
!! GGAATTTGATATAAATATTG+CGG - chr6_1:79029359-79029378 Msa0894020:CDS 20.0%
!!! ATTTTTTAACTTTGATCATG+GGG - chr6_1:79029794-79029813 Msa0894020:intron 20.0%
!!! TGTTTTTACATAAAATAGGA+AGG - chr6_1:79029959-79029978 Msa0894020:intron 20.0%
!! AATTAAGATAATGTATAGTG+TGG + chr6_1:79030136-79030155 None:intergenic 20.0%
!!! CTAATTGCCTATAATATTTT+TGG - chr6_1:79030702-79030721 Msa0894020:intron 20.0%
!!! GTTTTTCTATCTCTAAATTT+TGG + chr6_1:79031007-79031026 None:intergenic 20.0%
!!! TAATGAAAATGAATTTTAGG+TGG - chr6_1:79031194-79031213 Msa0894020:intron 20.0%
!!! AATGAAAATGAATTTTAGGT+GGG - chr6_1:79031195-79031214 Msa0894020:intron 20.0%
!!! TTGTGATTAGAACATTTTTA+GGG - chr6_1:79031519-79031538 Msa0894020:intron 20.0%
!!! ATTGTTCATTTTTGTAAACA+AGG - chr6_1:79032205-79032224 Msa0894020:intron 20.0%
! GTTGTTCACGTAAAAAAAAA+GGG + chr6_1:79028870-79028889 None:intergenic 25.0%
! TGTTGTTCACGTAAAAAAAA+AGG + chr6_1:79028871-79028890 None:intergenic 25.0%
! GAATAAAACCAAGAGAAAAT+AGG - chr6_1:79028983-79029002 Msa0894020:CDS 25.0%
! CAAATGTGTAATATCTATGT+TGG + chr6_1:79029109-79029128 None:intergenic 25.0%
! GCAATGTTAGTAATATTAAG+TGG + chr6_1:79029167-79029186 None:intergenic 25.0%
! TTCAAGAATGCCAATAATAT+AGG - chr6_1:79029246-79029265 Msa0894020:intron 25.0%
! GCAAATTGATAAACTAAAAG+AGG - chr6_1:79029383-79029402 Msa0894020:CDS 25.0%
! AATTGATAAACTAAAAGAGG+AGG - chr6_1:79029386-79029405 Msa0894020:CDS 25.0%
!! AGACGAAATTAATCAAGTTT+TGG - chr6_1:79029503-79029522 Msa0894020:CDS 25.0%
!!! ATTCTATTTCTGTGCTATTT+AGG - chr6_1:79029583-79029602 Msa0894020:intron 25.0%
!!! TTCTATTTCTGTGCTATTTA+GGG - chr6_1:79029584-79029603 Msa0894020:intron 25.0%
! CGTTGTTACTAAAAATGTAA+AGG + chr6_1:79029861-79029880 None:intergenic 25.0%
! TATAATTATGTAAAGAACCG+AGG + chr6_1:79030038-79030057 None:intergenic 25.0%
!!! TATTTTTGATATCATTAGGC+CGG - chr6_1:79030056-79030075 Msa0894020:intron 25.0%
! CGTAAGTAGAATTTCATTAT+GGG + chr6_1:79030555-79030574 None:intergenic 25.0%
! ACGTAAGTAGAATTTCATTA+TGG + chr6_1:79030556-79030575 None:intergenic 25.0%
! TAATGAAATTCTACTTACGT+TGG - chr6_1:79030556-79030575 Msa0894020:CDS 25.0%
!!! TTTTGGTCTTTATATATAGG+TGG - chr6_1:79030719-79030738 Msa0894020:intron 25.0%
! GTCATCAATGTATGATAAAA+TGG + chr6_1:79030878-79030897 None:intergenic 25.0%
!! TGAGTTAGAACTTTTTACTA+AGG - chr6_1:79030924-79030943 Msa0894020:CDS 25.0%
!! TTTTTACTAAGGCAATTGAA+AGG - chr6_1:79030935-79030954 Msa0894020:CDS 25.0%
!!! TTCTTTTAAGAAGTGGTTAA+TGG + chr6_1:79031332-79031351 None:intergenic 25.0%
! GATCTATGTATGTATCTATA+CGG + chr6_1:79031489-79031508 None:intergenic 25.0%
!! CTTGTGATTAGAACATTTTT+AGG - chr6_1:79031518-79031537 Msa0894020:intron 25.0%
!!! TGTGATTAGAACATTTTTAG+GGG - chr6_1:79031520-79031539 Msa0894020:intron 25.0%
!! TTTTGTTGAACTATTGTCTA+CGG + chr6_1:79031773-79031792 None:intergenic 25.0%
! CACAAATGATATCTTCAATT+GGG - chr6_1:79032041-79032060 Msa0894020:CDS 25.0%
! ATACTTGGAATGTTATATGA+GGG - chr6_1:79032432-79032451 Msa0894020:intron 25.0%
! TTATATGAGGGAATATGATA+TGG - chr6_1:79032444-79032463 Msa0894020:intron 25.0%
! ATATAAATGAGGAATGTCTT+AGG - chr6_1:79032521-79032540 Msa0894020:intron 25.0%
! GTTGGTTATTTGTTAGCAAT+AGG - chr6_1:79029032-79029051 Msa0894020:intron 30.0%
! TAGGATTTCCAACATTTTTG+AGG - chr6_1:79029072-79029091 Msa0894020:intron 30.0%
! AGGATTTCCAACATTTTTGA+GGG - chr6_1:79029073-79029092 Msa0894020:intron 30.0%
TTAATTATACGATCCAAGTG+TGG + chr6_1:79029140-79029159 None:intergenic 30.0%
!!! TGCATGTTTTGATTACATAC+AGG - chr6_1:79029338-79029357 Msa0894020:CDS 30.0%
! ATTGACTCAATATGTCGTTT+GGG - chr6_1:79029462-79029481 Msa0894020:CDS 30.0%
! CATTTTGAACAAAATCCTTG+TGG + chr6_1:79029536-79029555 None:intergenic 30.0%
! CACAAGGATTTTGTTCAAAA+TGG - chr6_1:79029534-79029553 Msa0894020:CDS 30.0%
AATGGAGAAATAACTCTCAA+AGG - chr6_1:79029552-79029571 Msa0894020:intron 30.0%
ATAGCACAGAAATAGAATGA+AGG + chr6_1:79029581-79029600 None:intergenic 30.0%
TAAGTGGAGATATAAATACC+AGG + chr6_1:79029639-79029658 None:intergenic 30.0%
TTGAGTAAAACAAACTTGTG+TGG - chr6_1:79029703-79029722 Msa0894020:intron 30.0%
!! GGATAATGGGTTGTTTAATA+TGG + chr6_1:79030003-79030022 None:intergenic 30.0%
GATAACATTACACGGATAAT+GGG + chr6_1:79030016-79030035 None:intergenic 30.0%
AAGGTTCTTCCTTAATAAGA+TGG + chr6_1:79030098-79030117 None:intergenic 30.0%
AGATGTATTCAACCAATTCA+AGG - chr6_1:79030265-79030284 Msa0894020:intron 30.0%
AACATTGATCATAGATGTTG+AGG - chr6_1:79030310-79030329 Msa0894020:intron 30.0%
ACATTGATCATAGATGTTGA+GGG - chr6_1:79030311-79030330 Msa0894020:intron 30.0%
! GATTCATGGTGAGAAAATTT+TGG - chr6_1:79030367-79030386 Msa0894020:intron 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6_1:79030610-79030629 None:intergenic 30.0%
! ATTTTAAATTAAGGAGGGTG+TGG + chr6_1:79030656-79030675 None:intergenic 30.0%
CTAAAAAACTACCTTATGCA+CGG - chr6_1:79030761-79030780 Msa0894020:intron 30.0%
TAAAAAACTACCTTATGCAC+GGG - chr6_1:79030762-79030781 Msa0894020:intron 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6_1:79030789-79030808 Msa0894020:intron 30.0%
TAGAGAAACTTCATGTAATC+CGG + chr6_1:79031244-79031263 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+TGG + chr6_1:79031339-79031358 None:intergenic 30.0%
! TTCTAATCACAAGATTTGCT+AGG + chr6_1:79031511-79031530 None:intergenic 30.0%
CAAAAAATACATAGGAGTTC+AGG - chr6_1:79031821-79031840 Msa0894020:CDS 30.0%
TAACTATATACCAACAACAG+AGG - chr6_1:79031939-79031958 Msa0894020:CDS 30.0%
AACACATCAACAATATCAAG+TGG - chr6_1:79031970-79031989 Msa0894020:CDS 30.0%
CCAATTGAAGATATCATTTG+TGG + chr6_1:79032043-79032062 None:intergenic 30.0%
CCACAAATGATATCTTCAAT+TGG - chr6_1:79032040-79032059 Msa0894020:CDS 30.0%
GTTTCACACAATATTCTTTG+TGG - chr6_1:79032162-79032181 Msa0894020:intron 30.0%
CATACTTGGAATGTTATATG+AGG - chr6_1:79032431-79032450 Msa0894020:intron 30.0%
!! AAGCATTGTCAATTTTCTTG+TGG + chr6_1:79032495-79032514 None:intergenic 30.0%
ACAAGAAAATTGACAATGCT+TGG - chr6_1:79032494-79032513 Msa0894020:intron 30.0%
TGCTTGGAAAGATATAAATG+AGG - chr6_1:79032510-79032529 Msa0894020:intron 30.0%
! AAACGTAATGGAACTTTAGT+TGG + chr6_1:79032547-79032566 None:intergenic 30.0%
GACAAGCAAATCATTAATGT+AGG + chr6_1:79032659-79032678 None:intergenic 30.0%
!! ACCAAAGATTCTGAAGCATA+CGG + chr6_1:79028835-79028854 None:intergenic 35.0%
!! TAGCTCTACCTATTTTCTCT+TGG + chr6_1:79028994-79029013 None:intergenic 35.0%
CTAACAAATAACCAACCCTT+TGG + chr6_1:79029028-79029047 None:intergenic 35.0%
TTAGCAATAGGAATGAAACC+TGG - chr6_1:79029044-79029063 Msa0894020:intron 35.0%
!! TCCAACATTTTTGAGGGAAA+AGG - chr6_1:79029079-79029098 Msa0894020:intron 35.0%
! TCCTTTTCCCTCAAAAATGT+TGG + chr6_1:79029083-79029102 None:intergenic 35.0%
! GATTGACTCAATATGTCGTT+TGG - chr6_1:79029461-79029480 Msa0894020:CDS 35.0%
!!! AGTTTTGGAAGATATCCACA+AGG - chr6_1:79029518-79029537 Msa0894020:CDS 35.0%
AAAATAGGAAGGATCATCGT+AGG - chr6_1:79029970-79029989 Msa0894020:intron 35.0%
GGATAACATTACACGGATAA+TGG + chr6_1:79030017-79030036 None:intergenic 35.0%
TATCCGTGTAATGTTATCCT+CGG - chr6_1:79030018-79030037 Msa0894020:intron 35.0%
TAATAAGATGGCTACCCTAT+AGG + chr6_1:79030086-79030105 None:intergenic 35.0%
ATAGGGTAGCCATCTTATTA+AGG - chr6_1:79030086-79030105 Msa0894020:intron 35.0%
!! GTGGTTCTAGAGTATGAAAA+AGG + chr6_1:79030117-79030136 None:intergenic 35.0%
ATGATTGTTCAACATTGTCG+TGG - chr6_1:79030224-79030243 Msa0894020:intron 35.0%
ACCATGAATCATCATATGTG+AGG + chr6_1:79030357-79030376 None:intergenic 35.0%
!! TGGTGAGAAAATTTTGGAAG+AGG - chr6_1:79030373-79030392 Msa0894020:intron 35.0%
!! GAAAATTTTGGAAGAGGCAT+TGG - chr6_1:79030379-79030398 Msa0894020:intron 35.0%
TCTACTTACGTTGGCAAAAT+TGG - chr6_1:79030565-79030584 Msa0894020:CDS 35.0%
! ATTCCTTTTGATGTAGGCTT+TGG + chr6_1:79030604-79030623 None:intergenic 35.0%
AGCCTACATCAAAAGGAATT+TGG - chr6_1:79030605-79030624 Msa0894020:CDS 35.0%
TGGTCTTTATATATAGGTGG+TGG - chr6_1:79030722-79030741 Msa0894020:intron 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6_1:79030726-79030745 Msa0894020:intron 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6_1:79030788-79030807 Msa0894020:intron 35.0%
!!! ATGTTGCTTTTGGGTTATGA+CGG - chr6_1:79030798-79030817 Msa0894020:intron 35.0%
TTCCTTGCTTGACAATATTG+AGG + chr6_1:79030835-79030854 None:intergenic 35.0%
TAGGTGGGATATTAGTTGTT+TGG - chr6_1:79031210-79031229 Msa0894020:intron 35.0%
TAGTTGTTTGGATGATCTTC+CGG - chr6_1:79031222-79031241 Msa0894020:intron 35.0%
GTTTCTCTATAAACCACTCT+TGG - chr6_1:79031255-79031274 Msa0894020:intron 35.0%
TCTTCATAAACATCCAAGAG+TGG + chr6_1:79031271-79031290 None:intergenic 35.0%
ATAGTTAACATTCAACCACC+TGG + chr6_1:79031926-79031945 None:intergenic 35.0%
AACAATATCAAGTGGTTACC+CGG - chr6_1:79031978-79031997 Msa0894020:CDS 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_1:79032008-79032027 Msa0894020:CDS 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_1:79032009-79032028 Msa0894020:CDS 35.0%
! GCAGCAGCATTAACAATTTT+CGG + chr6_1:79032078-79032097 None:intergenic 35.0%
AAACAGTTCGAGCAAAAAAG+AGG - chr6_1:79032397-79032416 Msa0894020:intron 35.0%
TTTCTTGTGGCATTCTTGAA+TGG + chr6_1:79032482-79032501 None:intergenic 35.0%
ACACACGTCAAAAAACGTAA+TGG + chr6_1:79032559-79032578 None:intergenic 35.0%
AAACCTCAATAAAACGCGAA+AGG + chr6_1:79032588-79032607 None:intergenic 35.0%
TCCGTATGCTTCAGAATCTT+TGG - chr6_1:79028831-79028850 Msa0894020:CDS 40.0%
AGCTATAGCAAACACTCCAA+AGG - chr6_1:79029009-79029028 Msa0894020:CDS 40.0%
GCTATAGCAAACACTCCAAA+GGG - chr6_1:79029010-79029029 Msa0894020:CDS 40.0%
! GGAATGAAACCTGGTGTTTT+AGG - chr6_1:79029053-79029072 Msa0894020:intron 40.0%
GTTGGAAATCCTAAAACACC+AGG + chr6_1:79029065-79029084 None:intergenic 40.0%
TTATACGATCCAAGTGTGGT+TGG + chr6_1:79029136-79029155 None:intergenic 40.0%
ACTAACATTGCACACTCCAA+AGG - chr6_1:79029176-79029195 Msa0894020:intron 40.0%
CTAACATTGCACACTCCAAA+GGG - chr6_1:79029177-79029196 Msa0894020:intron 40.0%
GTGAGTAACTTGAATCCCTT+TGG + chr6_1:79029195-79029214 None:intergenic 40.0%
CATGGTCTTTACATTTCACC+TGG - chr6_1:79029618-79029637 Msa0894020:intron 40.0%
GAACCGAGGATAACATTACA+CGG + chr6_1:79030024-79030043 None:intergenic 40.0%
! ATTAGGCCGGTTTACCTATA+GGG - chr6_1:79030069-79030088 Msa0894020:intron 40.0%
AACCAATTCAAGGACAAGCA+AGG - chr6_1:79030275-79030294 Msa0894020:intron 40.0%
TTCCTTGCTTGTCCTTGAAT+TGG + chr6_1:79030280-79030299 None:intergenic 40.0%
GCCTCACATATGATGATTCA+TGG - chr6_1:79030353-79030372 Msa0894020:intron 40.0%
! ATTGGGTTGCAATTGACTCA+AGG + chr6_1:79030421-79030440 None:intergenic 40.0%
CTTGCGACACAAGTCAAATA+TGG - chr6_1:79030452-79030471 Msa0894020:intron 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6_1:79030534-79030553 None:intergenic 40.0%
AGCCTCAATATTGTCAAGCA+AGG - chr6_1:79030830-79030849 Msa0894020:CDS 40.0%
TTGTCAAGCAAGGAAAGTGA+TGG - chr6_1:79030840-79030859 Msa0894020:CDS 40.0%
GATGACACGTATGATGCATA+CGG - chr6_1:79030892-79030911 Msa0894020:CDS 40.0%
GAGCAAGAAGTGAAGAAAGA+AGG - chr6_1:79031295-79031314 Msa0894020:intron 40.0%
GTATGTATCTATACGGAGAG+TGG + chr6_1:79031482-79031501 None:intergenic 40.0%
TTCATGTACTCCTCTGTTGT+TGG + chr6_1:79031952-79031971 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_1:79032003-79032022 Msa0894020:CDS 40.0%
! AGGACATGTTGCTTCATACT+TGG - chr6_1:79032417-79032436 Msa0894020:intron 40.0%
!! CAACCTTTCGCGTTTTATTG+AGG - chr6_1:79032582-79032601 Msa0894020:intron 40.0%
GACAACTACACACATTCTGA+AGG - chr6_1:79032622-79032641 Msa0894020:CDS 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6_1:79028795-79028814 Msa0894020:CDS 45.0%
TAGCAAACACTCCAAAGGGT+TGG - chr6_1:79029014-79029033 Msa0894020:CDS 45.0%
ATTTGCACACCAACCACACT+TGG - chr6_1:79029124-79029143 Msa0894020:intron 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6_1:79029592-79029611 Msa0894020:intron 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6_1:79029600-79029619 Msa0894020:intron 45.0%
AGGAAGGATCATCGTAGGAT+CGG - chr6_1:79029975-79029994 Msa0894020:intron 45.0%
! CATTAGGCCGGTTTACCTAT+AGG - chr6_1:79030068-79030087 Msa0894020:intron 45.0%
TGGCTACCCTATAGGTAAAC+CGG + chr6_1:79030078-79030097 None:intergenic 45.0%
!!! GAGGCATTGGCTTTTACTTC+TGG - chr6_1:79030392-79030411 Msa0894020:intron 45.0%
CGCAAGAGAAGGACTCAATT+GGG + chr6_1:79030438-79030457 None:intergenic 45.0%
TCGCAAGAGAAGGACTCAAT+TGG + chr6_1:79030439-79030458 None:intergenic 45.0%
!! TTGACTTGTGTCGCAAGAGA+AGG + chr6_1:79030449-79030468 None:intergenic 45.0%
CAAAAACTTGCCTAGGCTAG+AGG - chr6_1:79030493-79030512 Msa0894020:intron 45.0%
GCTCCAAAGCCTACATCAAA+AGG - chr6_1:79030598-79030617 Msa0894020:CDS 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6_1:79030732-79030751 Msa0894020:intron 45.0%
AGTCCAAGCTTACATGAGTG+AGG - chr6_1:79031900-79031919 Msa0894020:CDS 45.0%
TAAGAAGTCGTAGCCAACAC+CGG + chr6_1:79032000-79032019 None:intergenic 45.0%
TGCTGTTCATTGCAGGCTTA+GGG - chr6_1:79032095-79032114 Msa0894020:intron 45.0%
GGATGAAATTGTGTCTAGCG+AGG - chr6_1:79032116-79032135 Msa0894020:intron 45.0%
!! ATATATATATATATATTACA+AGG + chr6_1:79029223-79029242 None:intergenic 5.0%
!!! TCATTTTTTATATTTTAATT+TGG - chr6_1:79029673-79029692 Msa0894020:intron 5.0%
!!! TTCAATTTAATTTTAAATTA+AGG + chr6_1:79030665-79030684 None:intergenic 5.0%
!!! AAAATTAAATAATAACTTTT+AGG - chr6_1:79031069-79031088 Msa0894020:CDS 5.0%
!! TTTAAAAAAAGATTATATAT+TGG - chr6_1:79031735-79031754 Msa0894020:intron 5.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6_1:79028794-79028813 Msa0894020:CDS 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6_1:79028796-79028815 Msa0894020:CDS 50.0%
ATTTCCACCCTAGCGTTTGG+GGG - chr6_1:79028797-79028816 Msa0894020:CDS 50.0%
! GGGTTGCAATTGACTCAAGG+TGG + chr6_1:79030418-79030437 None:intergenic 50.0%
! CTAGGCAAGTTTTTGCGCAG+AGG + chr6_1:79030488-79030507 None:intergenic 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6_1:79030486-79030505 Msa0894020:intron 50.0%
TAGCTTCTTGCCTCTAGCCT+AGG + chr6_1:79030506-79030525 None:intergenic 50.0%
ACTACTCTGTCCCGTGCATA+AGG + chr6_1:79030775-79030794 None:intergenic 50.0%
TGGCCTCACTCATGTAAGCT+TGG + chr6_1:79031906-79031925 None:intergenic 50.0%
AAGCTTACATGAGTGAGGCC+AGG - chr6_1:79031905-79031924 Msa0894020:CDS 50.0%
ATCAAGTGGTTACCCGGTGT+TGG - chr6_1:79031984-79032003 Msa0894020:CDS 50.0%
AAGAAGTCGTAGCCAACACC+GGG + chr6_1:79031999-79032018 None:intergenic 50.0%
ATGCTGCTGCTGTTCATTGC+AGG - chr6_1:79032088-79032107 Msa0894020:intron 50.0%
CTGCTGTTCATTGCAGGCTT+AGG - chr6_1:79032094-79032113 Msa0894020:intron 50.0%
TTTCCACCCTAGCGTTTGGG+GGG - chr6_1:79028798-79028817 Msa0894020:CDS 55.0%
AGAAGTCCCCCCAAACGCTA+GGG + chr6_1:79028807-79028826 None:intergenic 55.0%
AAGAAGTCCCCCCAAACGCT+AGG + chr6_1:79028808-79028827 None:intergenic 55.0%
CTTACATGAGTGAGGCCAGG+TGG - chr6_1:79031908-79031927 Msa0894020:CDS 55.0%
AGTCCCCCCAAACGCTAGGG+TGG + chr6_1:79028804-79028823 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 79028754 79032696 79028754 ID=Msa0894020;Name=Msa0894020
chr6_1 mRNA 79028754 79032696 79028754 ID=Msa0894020-mRNA-1;Parent=Msa0894020;Name=Msa0894020-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|7|0|550
chr6_1 exon 79032598 79032696 79032598 ID=Msa0894020-mRNA-1:exon:13243;Parent=Msa0894020-mRNA-1
chr6_1 exon 79031811 79032090 79031811 ID=Msa0894020-mRNA-1:exon:13242;Parent=Msa0894020-mRNA-1
chr6_1 exon 79030811 79031183 79030811 ID=Msa0894020-mRNA-1:exon:13241;Parent=Msa0894020-mRNA-1
chr6_1 exon 79030494 79030712 79030494 ID=Msa0894020-mRNA-1:exon:13240;Parent=Msa0894020-mRNA-1
chr6_1 exon 79030099 79030237 79030099 ID=Msa0894020-mRNA-1:exon:13239;Parent=Msa0894020-mRNA-1
chr6_1 exon 79029313 79029561 79029313 ID=Msa0894020-mRNA-1:exon:13238;Parent=Msa0894020-mRNA-1
chr6_1 exon 79028754 79029047 79028754 ID=Msa0894020-mRNA-1:exon:13237;Parent=Msa0894020-mRNA-1
chr6_1 CDS 79032598 79032696 79032598 ID=Msa0894020-mRNA-1:cds;Parent=Msa0894020-mRNA-1
chr6_1 CDS 79031811 79032090 79031811 ID=Msa0894020-mRNA-1:cds;Parent=Msa0894020-mRNA-1
chr6_1 CDS 79030811 79031183 79030811 ID=Msa0894020-mRNA-1:cds;Parent=Msa0894020-mRNA-1
chr6_1 CDS 79030494 79030712 79030494 ID=Msa0894020-mRNA-1:cds;Parent=Msa0894020-mRNA-1
chr6_1 CDS 79030099 79030237 79030099 ID=Msa0894020-mRNA-1:cds;Parent=Msa0894020-mRNA-1
chr6_1 CDS 79029313 79029561 79029313 ID=Msa0894020-mRNA-1:cds;Parent=Msa0894020-mRNA-1
chr6_1 CDS 79028754 79029047 79028754 ID=Msa0894020-mRNA-1:cds;Parent=Msa0894020-mRNA-1
Gene Sequence

>Msa0894020

ATGTCTCATAACGAGAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGAATTTGATATAAATATTGCGGCGCAAATTGATAAACTAAAAGAGGAGGTTAGACAAATGCTTGTCTCAAAAATTGAGAATCTGTTGAAAAAAGTCAACTTGATTGACTCAATATGTCGTTTGGGTGTGAGCTATTATTTTGAAGACGAAATTAATCAAGTTTTGGAAGATATCCACAAGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGCAACCTTCATTCTATTTCTGTGCTATTTAGGGTGTTGAGGCAACATGGTCTTTACATTTCACCTGATGTATTCAACCAATTCAAGGACAAGCAAGGAAATTTTAATGAAACATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGATTCATGGTGAGAAAATTTTGGAAGAGGCATTGGCTTTTACTTCTGGCCACCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGACACAAGTCAAATATGGCTTAAGACATCCTCTGCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAGGAATTTGGAAACATTTGCAAGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAGTGATGGCAAAAGTAATCTCCATTTTATCATACATTGATGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGCAATTGAAAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATTGAGCAAGAAGTGAAGAAAGAAGGAAGAGTATACGCCATTAACCACTTCTTAAAAGAATTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAACTATATACCAACAACAGAGGAGTACATGAACACATCAACAATATCAAGTGGTTACCCGGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCCACAAATGATATCTTCAATTGGGTAACTAGTCATCCGAAAATTGTTAATGCTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCGAGTTCGAGCAAAAAAGAGGACATGTTGCTTCATACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGCTGCCATTCAAGAATGCCACAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTACGTTTTTTGACGTGTGTTCTCAACCTTTCGCGTTTTATTGAGGTTTTTTACAAAGATGAAGACAACTACACACATTCTGAAGGACTAATGAAGACCTACATTAATGATTTGCTTGTCAATCCCATCCCAACATGA
Protein sequence

>Msa0894020

MSHNEKSVLQRNVADFHPSVWGDFFIPYASESLEFDINIAAQIDKLKEEVRQMLVSKIENLLKKVNLIDSICRLGVSYYFEDEINQVLEDIHKDFVQNGEITLKGNLHSISVLFRVLRQHGLYISPDVFNQFKDKQGNFNETLIIDVEGMLNLYEASHMMIHGEKILEEALAFTSGHLESIATQLSPSLATQVKYGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQSLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKVMAKVISILSYIDDTYDAYGTIDELELFTKAIERWDISCLDDLPDYMKFLYKPLLDVYEEIEQEVKKEGRVYAINHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPVLATTSYIGMGNIATNDIFNWVTSHPKIVNAAAVHCRLRDEIVSSEFEQKRGHVASYLECYMREYDMDREAAIQECHKKIDNAWKDINEECLRPTKVPLRFLTCVLNLSRFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT*