AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0894070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0894070 MtrunA17_Chr6g0465441 68.670 549 170 1 1 547 4 552 0.0 807
Msa0894070 MtrunA17_Chr7g0236991 68.306 549 172 1 1 547 4 552 0.0 806
Msa0894070 MtrunA17_Chr7g0237001 68.124 549 173 1 1 547 4 552 0.0 805
Msa0894070 MtrunA17_Chr7g0237041 68.124 549 173 1 1 547 4 552 0.0 805
Msa0894070 MtrunA17_Chr7g0237081 68.124 549 173 1 1 547 4 552 0.0 805
Msa0894070 MtrunA17_Chr7g0237051 68.124 549 173 1 1 547 4 552 0.0 805
Msa0894070 MtrunA17_Chr5g0425371 69.035 549 168 1 1 547 4 552 0.0 798
Msa0894070 MtrunA17_Chr6g0465911 67.942 549 174 1 1 547 4 552 0.0 791
Msa0894070 MtrunA17_Chr6g0466051 67.760 549 175 1 1 547 4 552 0.0 790
Msa0894070 MtrunA17_Chr4g0024691 69.301 544 165 1 6 547 17 560 0.0 789
Msa0894070 MtrunA17_Chr6g0451711 67.213 549 177 2 2 547 8 556 0.0 785
Msa0894070 MtrunA17_Chr3g0105071 66.485 549 181 2 1 546 7 555 0.0 769
Msa0894070 MtrunA17_Chr6g0465851 68.859 517 159 1 33 547 1 517 0.0 750
Msa0894070 MtrunA17_Chr3g0082691 65.138 545 187 2 6 547 8 552 0.0 750
Msa0894070 MtrunA17_Chr7g0236961 69.215 497 151 1 53 547 1 497 0.0 738
Msa0894070 MtrunA17_Chr5g0431651 64.247 551 193 3 1 547 1 551 0.0 738
Msa0894070 MtrunA17_Chr7g0237011 69.215 497 151 1 53 547 1 497 0.0 737
Msa0894070 MtrunA17_Chr5g0431571 65.809 544 183 2 6 546 4 547 0.0 737
Msa0894070 MtrunA17_Chr4g0042111 58.212 548 224 3 4 547 15 561 0.0 662
Msa0894070 MtrunA17_Chr7g0236971 69.000 400 122 1 150 547 1 400 0.0 597
Msa0894070 MtrunA17_Chr6g0465981 68.649 370 116 0 1 370 4 373 0.0 545
Msa0894070 MtrunA17_Chr6g0465871 68.649 370 116 0 1 370 4 373 0.0 545
Msa0894070 MtrunA17_Chr6g0466081 68.649 370 116 0 1 370 4 373 0.0 545
Msa0894070 MtrunA17_Chr6g0466111 70.118 338 101 0 33 370 1 338 7.71e-177 502
Msa0894070 MtrunA17_Chr6g0465931 69.822 338 102 0 33 370 1 338 8.51e-176 499
Msa0894070 MtrunA17_Chr2g0319041 45.421 546 288 8 9 546 12 555 2.31e-171 496
Msa0894070 MtrunA17_Chr7g0236951 70.476 315 93 0 53 367 1 315 4.08e-169 481
Msa0894070 MtrunA17_Chr8g0336181 45.985 548 286 7 7 546 9 554 9.01e-169 489
Msa0894070 MtrunA17_Chr7g0237031 70.476 315 93 0 53 367 1 315 1.25e-168 480
Msa0894070 MtrunA17_Chr2g0319051 45.205 511 272 7 42 546 4 512 1.94e-160 467
Msa0894070 MtrunA17_Chr4g0008621 45.750 400 213 4 9 404 19 418 1.28e-123 370
Msa0894070 MtrunA17_Chr6g0466031 65.637 259 87 1 291 547 1 259 5.49e-120 354
Msa0894070 MtrunA17_Chr5g0445511 66.527 239 80 0 145 383 1 239 3.83e-117 346
Msa0894070 MtrunA17_Chr4g0023911 34.672 548 345 5 5 546 39 579 1.16e-112 347
Msa0894070 MtrunA17_Chr2g0319071 37.524 517 271 11 38 548 19 489 7.10e-112 342
Msa0894070 MtrunA17_Chr7g0237061 61.868 257 77 2 291 547 1 236 6.14e-110 327
Msa0894070 MtrunA17_Chr2g0310331 35.490 541 337 7 11 547 53 585 7.26e-107 332
Msa0894070 MtrunA17_Chr2g0323131 35.728 515 306 10 43 548 67 565 4.28e-106 329
Msa0894070 MtrunA17_Chr2g0323151 35.583 489 296 6 65 547 4 479 6.07e-103 318
Msa0894070 MtrunA17_Chr8g0357411 33.394 551 356 6 1 547 45 588 3.47e-96 304
Msa0894070 MtrunA17_Chr7g0237071 68.812 202 63 0 53 254 1 202 8.92e-95 288
Msa0894070 MtrunA17_Chr6g0466021 65.657 198 68 0 1 198 4 201 2.77e-91 278
Msa0894070 MtrunA17_Chr4g0048921 32.233 515 334 7 38 546 64 569 2.21e-85 275
Msa0894070 MtrunA17_Chr4g0048911 30.952 546 363 10 2 540 18 556 3.72e-84 272
Msa0894070 MtrunA17_Chr7g0237021 67.836 171 53 1 379 547 1 171 4.87e-81 251
Msa0894070 MtrunA17_Chr7g0236941 67.836 171 53 1 379 547 1 171 4.87e-81 251
Msa0894070 MtrunA17_Chr6g0465941 66.082 171 56 1 379 547 1 171 8.09e-77 240
Msa0894070 MtrunA17_Chr6g0466121 66.082 171 56 1 379 547 1 171 8.09e-77 240
Msa0894070 MtrunA17_Chr6g0465991 66.082 171 56 1 379 547 1 171 8.09e-77 240
Msa0894070 MtrunA17_Chr6g0466091 66.082 171 56 1 379 547 1 171 8.09e-77 240
Msa0894070 MtrunA17_Chr2g0280581 30.286 525 337 10 36 539 2 518 1.57e-76 251
Msa0894070 MtrunA17_Chr6g0465881 65.497 171 57 1 379 547 1 171 4.64e-76 238
Msa0894070 MtrunA17_Chr2g0319081 40.123 324 173 8 228 546 118 425 1.92e-73 240
Msa0894070 MtrunA17_Chr2g0319081 40.984 122 71 1 9 129 19 140 4.19e-23 102
Msa0894070 MtrunA17_Chr2g0310401 32.944 428 282 3 124 547 5 431 1.04e-72 238
Msa0894070 MtrunA17_Chr3g0109001 30.461 499 318 10 46 526 12 499 4.55e-71 236
Msa0894070 MtrunA17_Chr3g0108941 30.019 513 329 11 48 542 13 513 9.77e-71 235
Msa0894070 MtrunA17_Chr5g0445501 60.819 171 65 1 379 547 1 171 5.14e-70 222
Msa0894070 MtrunA17_Chr3g0109021 30.847 496 316 10 48 526 13 498 8.99e-70 233
Msa0894070 MtrunA17_Chr3g0109031 30.204 490 327 9 48 526 13 498 2.70e-69 231
Msa0894070 MtrunA17_Chr6g0477111 30.769 481 307 9 67 530 6 477 5.18e-69 230
Msa0894070 MtrunA17_Chr7g0236921 63.694 157 51 1 397 547 1 157 1.24e-68 218
Msa0894070 MtrunA17_Chr3g0105691 30.266 489 328 7 48 526 46 531 4.25e-68 229
Msa0894070 MtrunA17_Chr3g0108991 30.040 496 320 10 48 526 13 498 7.80e-67 225
Msa0894070 MtrunA17_Chr3g0108951 30.040 496 320 10 48 526 13 498 7.80e-67 225
Msa0894070 MtrunA17_Chr3g0108981 30.189 477 308 7 67 526 6 474 8.98e-67 224
Msa0894070 MtrunA17_Chr3g0108961 30.189 477 308 7 67 526 6 474 8.98e-67 224
Msa0894070 MtrunA17_Chr7g0236931 64.238 151 53 1 397 547 1 150 1.37e-66 213
Msa0894070 MtrunA17_Chr3g0099031 30.196 510 331 11 48 542 13 512 9.56e-66 222
Msa0894070 MtrunA17_Chr3g0108971 29.979 477 308 9 67 526 6 473 1.02e-64 219
Msa0894070 MtrunA17_Chr3g0109011 29.769 477 309 9 67 526 6 473 1.23e-64 219
Msa0894070 MtrunA17_Chr6g0477121 29.756 410 275 7 127 526 10 416 1.55e-56 195
Msa0894070 MtrunA17_Chr7g0236981 61.240 129 50 0 1 129 4 132 1.10e-52 176
Msa0894070 MtrunA17_Chr7g0233861 62.963 135 41 1 190 324 33 158 7.62e-52 175
Msa0894070 MtrunA17_Chr7g0217361 33.223 301 198 2 249 546 8 308 1.31e-48 171
Msa0894070 MtrunA17_Chr8g0357221 37.959 245 142 5 4 245 47 284 6.47e-43 155
Msa0894070 MtrunA17_Chr5g0445401 71.579 95 23 2 160 251 1 94 4.06e-35 127
Msa0894070 MtrunA17_Chr2g0310121 24.335 526 334 16 64 546 275 779 1.65e-33 135
Msa0894070 MtrunA17_Chr3g0082711 50.442 113 41 1 435 547 1 98 2.61e-33 122
Msa0894070 MtrunA17_Chr8g0357231 29.730 259 178 3 292 547 1 258 5.94e-33 126
Msa0894070 MtrunA17_Chr5g0445521 65.060 83 29 0 6 88 12 94 1.96e-32 120
Msa0894070 MtrunA17_Chr3g0101681 24.858 527 330 16 64 546 276 780 2.46e-31 129
Msa0894070 MtrunA17_Chr7g0259881 29.368 269 160 7 67 307 232 498 1.74e-26 114
Msa0894070 MtrunA17_Chr7g0218001 31.111 270 152 7 67 304 349 616 1.13e-24 108
Msa0894070 MtrunA17_Chr7g0217351 29.954 217 143 5 40 252 62 273 7.00e-22 96.3
Msa0894070 MtrunA17_Chr7g0218041 31.667 240 137 7 114 328 3 240 4.58e-17 83.6
Msa0894070 MtrunA17_Chr2g0281651 26.087 276 193 7 227 497 43 312 4.83e-17 83.6
Msa0894070 MtrunA17_Chr5g0411111 38.889 126 62 5 114 228 3 124 3.06e-14 69.7
Msa0894070 MtrunA17_Chr2g0310411 32.000 125 75 4 2 125 49 164 7.75e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0894070 AT5G23960.2 39.194 546 323 6 7 547 3 544 2.11e-145 430
Msa0894070 AT5G23960.1 39.234 548 322 7 7 547 3 546 2.09e-144 427
Msa0894070 AT1G70080.1 37.432 553 334 8 4 546 59 609 6.64e-125 379
Msa0894070 AT3G14490.1 37.071 553 334 8 4 547 53 600 1.55e-119 365
Msa0894070 AT3G14520.1 36.178 539 334 6 16 547 68 603 4.05e-119 364
Msa0894070 AT1G31950.1 35.741 540 335 6 16 547 70 605 1.70e-118 363
Msa0894070 AT1G31950.3 35.675 541 335 7 16 547 70 606 5.63e-118 362
Msa0894070 AT3G14540.1 36.364 539 333 5 16 547 65 600 3.11e-117 359
Msa0894070 AT5G44630.1 35.596 545 338 7 12 546 14 555 8.40e-112 344
Msa0894070 AT1G33750.1 34.270 534 343 5 18 547 73 602 8.65e-111 343
Msa0894070 AT3G29410.1 34.622 543 345 7 11 547 64 602 2.90e-110 342
Msa0894070 AT3G32030.1 34.323 539 344 7 16 547 68 603 4.03e-110 341
Msa0894070 AT4G13300.1 36.127 537 330 8 19 546 20 552 6.20e-108 334
Msa0894070 AT4G20210.1 34.249 546 344 8 11 546 58 598 6.84e-108 335
Msa0894070 AT4G20200.1 35.521 518 314 10 42 546 92 602 5.50e-106 330
Msa0894070 AT4G15870.1 34.758 538 325 9 19 546 75 596 3.60e-105 328
Msa0894070 AT3G29190.1 34.206 535 324 10 32 547 75 600 5.68e-105 328
Msa0894070 AT3G29410.2 34.800 500 318 5 53 547 1 497 3.06e-104 322
Msa0894070 AT4G13280.2 35.514 535 332 8 21 546 22 552 2.13e-102 320
Msa0894070 AT1G31950.2 35.886 457 280 6 16 463 70 522 5.03e-100 313
Msa0894070 AT3G14540.2 37.079 445 273 3 16 456 65 506 2.40e-99 310
Msa0894070 AT4G20230.1 33.272 541 337 10 19 544 70 601 4.88e-98 310
Msa0894070 AT4G20230.2 33.272 541 337 10 19 544 82 613 5.27e-98 310
Msa0894070 AT4G16730.1 31.608 541 351 8 22 547 2 538 1.89e-97 306
Msa0894070 AT2G23230.2 33.150 546 348 10 10 543 55 595 8.42e-95 301
Msa0894070 AT3G29110.1 33.945 545 347 10 11 546 55 595 1.05e-94 301
Msa0894070 AT4G16730.2 32.323 495 318 6 67 547 1 492 2.96e-94 296
Msa0894070 AT1G66020.1 32.537 544 356 7 11 546 56 596 1.33e-93 298
Msa0894070 AT2G23230.1 32.967 546 344 11 10 543 55 590 2.74e-92 295
Msa0894070 AT4G13280.1 34.393 535 308 10 21 546 22 522 3.42e-91 290
Msa0894070 AT1G48800.1 31.136 546 358 10 11 544 63 602 6.95e-90 288
Msa0894070 AT4G16740.1 31.532 555 355 11 6 547 21 563 1.99e-89 286
Msa0894070 AT1G61680.1 32.099 486 318 4 48 526 77 557 4.88e-87 280
Msa0894070 AT2G24210.1 31.183 558 363 10 4 547 39 589 5.37e-87 280
Msa0894070 AT3G25820.1 31.004 558 357 13 9 547 45 593 1.29e-84 275
Msa0894070 AT3G25830.1 31.004 558 357 13 9 547 45 593 1.29e-84 275
Msa0894070 AT3G25810.1 32.937 504 315 10 62 547 98 596 2.80e-84 273
Msa0894070 AT1G61680.2 31.687 486 313 5 48 526 77 550 8.28e-84 271
Msa0894070 AT5G48110.1 37.647 340 205 6 210 546 2 337 5.86e-82 259
Msa0894070 AT1G48820.1 30.983 539 320 13 11 541 63 557 2.59e-78 257
Msa0894070 AT4G16740.2 35.393 356 212 6 6 351 21 368 1.31e-68 226
Msa0894070 AT1G66020.2 34.688 369 232 6 11 373 56 421 7.54e-66 220
Msa0894070 AT3G25820.2 32.383 386 242 8 9 383 45 422 6.66e-64 216
Msa0894070 AT4G16740.4 35.258 329 195 6 6 324 21 341 1.53e-60 204
Msa0894070 AT4G16740.3 35.258 329 195 6 6 324 21 341 1.53e-60 204
Msa0894070 AT3G25820.4 33.639 327 198 8 9 324 45 363 5.32e-55 191
Msa0894070 AT3G25820.3 33.639 327 198 8 9 324 45 363 5.32e-55 191
Msa0894070 AT1G61120.1 24.319 514 343 14 62 546 286 782 1.89e-27 117
Msa0894070 AT1G79460.1 23.946 522 340 19 64 546 274 777 4.79e-26 113
Msa0894070 AT4G02780.1 30.859 256 147 7 67 294 334 587 3.07e-23 104

Find 93 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTATTGCTGTGCTATTT+AGG 0.092626 6_1:-79172957 Msa0894070:CDS
TCTACTTACGTTGGCAAAAT+TGG 0.135143 6_1:-79171928 Msa0894070:CDS
TTCTATTGCTGTGCTATTTA+GGG 0.199483 6_1:-79172956 Msa0894070:CDS
AACCTACATCAAAAGGAATT+TGG 0.224102 6_1:-79171888 Msa0894070:CDS
CTGCTGTTCATTGCAGGCTT+AGG 0.241228 6_1:-79170403 Msa0894070:CDS
ACGTAAGTAGAATTTCATTA+TGG 0.259315 6_1:+79171940 None:intergenic
GATTCATGGTGAGAAAATTT+TGG 0.259321 6_1:-79172126 Msa0894070:CDS
TCCGTATGCTTCAGAATCTT+TGG 0.269105 6_1:-79173648 Msa0894070:intron
ATGCTGCTGCTGTTCATTGC+AGG 0.286868 6_1:-79170409 Msa0894070:CDS
CAGATTTCCACCCTAGCGTT+TGG 0.305039 6_1:-79173685 Msa0894070:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.318717 6_1:-79173684 Msa0894070:CDS
AGACGAAATTAATCAAGTTT+TGG 0.321368 6_1:-79173037 Msa0894070:CDS
AATTGACTCAATATGTCGTT+TGG 0.326217 6_1:-79173079 Msa0894070:CDS
TTCCTTGCTTGTCCTTGAAT+TGG 0.334271 6_1:+79172216 None:intergenic
AAACTTAATGGAACTTTAGT+TGG 0.339085 6_1:+79169955 None:intergenic
TAGTTGTTTGGATGATCTTC+CGG 0.341349 6_1:-79171272 Msa0894070:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6_1:-79171705 Msa0894070:CDS
TTATATGAGGGAATATGATA+TGG 0.360767 6_1:-79170055 Msa0894070:CDS
GTCGTCAATGTATGATAAAA+TGG 0.369007 6_1:+79171618 None:intergenic
TGCTGTTCATTGCAGGCTTA+GGG 0.376798 6_1:-79170402 Msa0894070:CDS
CGTAAGTAGAATTTCATTAT+GGG 0.378944 6_1:+79171941 None:intergenic
CCACAAGTGATATCTTCAAT+TGG 0.380678 6_1:-79170457 Msa0894070:CDS
TAGGTGGGATATTAGTTGTT+TGG 0.387739 6_1:-79171284 Msa0894070:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6_1:+79171962 None:intergenic
CATACTTGGAATGTTATATG+AGG 0.398446 6_1:-79170068 Msa0894070:CDS
AGGACATGTTGCTTCATACT+TGG 0.399041 6_1:-79170082 Msa0894070:CDS
TTCATGTACTCCTCTGTTGT+TGG 0.399760 6_1:+79170548 None:intergenic
ATATAAATGAGGAATGTCTT+AGG 0.410838 6_1:-79169978 Msa0894070:CDS
TCGCAAGAGAAGGACTCAAT+TGG 0.412353 6_1:+79172057 None:intergenic
AAAAGAAAATTGACAATGCT+TGG 0.419595 6_1:-79170005 Msa0894070:CDS
TAGAGAAACTTCATGTAATC+CGG 0.427919 6_1:+79171253 None:intergenic
GTTTCTCTATAAACCACTCT+TGG 0.439981 6_1:-79171239 Msa0894070:CDS
GTAGGTCTTCATTAGTCCTT+CGG 0.442180 6_1:+79169861 None:intergenic
ATTGACTCAATATGTCGTTT+GGG 0.443010 6_1:-79173078 Msa0894070:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6_1:-79170489 Msa0894070:CDS
ACTACTCTGTCCCGTGCATA+AGG 0.457542 6_1:+79171721 None:intergenic
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_1:-79170488 Msa0894070:CDS
TTCCTTGCTTGACAATATTG+AGG 0.465049 6_1:+79171661 None:intergenic
GCTCCAAAACCTACATCAAA+AGG 0.468120 6_1:-79171895 Msa0894070:CDS
CACAAGTGATATCTTCAATT+GGG 0.469506 6_1:-79170456 Msa0894070:CDS
GAGCAAGAAGTGAAGAAAGA+AGG 0.476258 6_1:-79171199 Msa0894070:CDS
ACCAAAATCAATGCTCATGT+TGG 0.476318 6_1:+79169811 None:intergenic
AGATGTATTCAACCAATTCA+AGG 0.477088 6_1:-79172228 Msa0894070:CDS
GCCTCGCATATGATGATTCA+TGG 0.478503 6_1:-79172140 Msa0894070:CDS
CGCAAGAGAAGGACTCAATT+GGG 0.484801 6_1:+79172058 None:intergenic
CCAAAATCAATGCTCATGTT+GGG 0.485248 6_1:+79169812 None:intergenic
AACATTGATCATAGATGTTG+AGG 0.512550 6_1:-79172183 Msa0894070:CDS
AACAATATCAAGTGGTTACC+CGG 0.513550 6_1:-79170519 Msa0894070:CDS
ATCAATGCTCATGTTGGGAT+GGG 0.522554 6_1:+79169817 None:intergenic
CATGGTCTTTACGTTTCACC+TGG 0.523602 6_1:-79172922 Msa0894070:intron
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6_1:-79171761 Msa0894070:intron
AGCCTCAATATTGTCAAGCA+AGG 0.528176 6_1:-79171663 Msa0894070:CDS
AATCAATGCTCATGTTGGGA+TGG 0.533171 6_1:+79169816 None:intergenic
TGGCCTCACTCATGTAAGCT+TGG 0.536408 6_1:+79170594 None:intergenic
ATCAAGTGGTTACCCGGTGT+TGG 0.539295 6_1:-79170513 Msa0894070:CDS
GATTTCCACCCTAGCGTTTG+GGG 0.542721 6_1:-79173683 Msa0894070:CDS
TTGTCAAGCAAGGAAAATGA+TGG 0.545763 6_1:-79171653 Msa0894070:CDS
TAGCTTCTTGCCTCTAGCCT+AGG 0.554871 6_1:+79171990 None:intergenic
ATACTTGGAATGTTATATGA+GGG 0.559157 6_1:-79170067 Msa0894070:CDS
TTGACTTGTGTCGCAAGAGA+AGG 0.560387 6_1:+79172047 None:intergenic
GGAATTTGATATAAATATTG+CGG 0.567112 6_1:-79173181 Msa0894070:CDS
CTTGCGACACAAGTCAAACA+TGG 0.567322 6_1:-79172041 Msa0894070:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.568035 6_1:-79172940 Msa0894070:CDS
GACGAGCAAATCATTAATGT+AGG 0.569159 6_1:+79169843 None:intergenic
CTGTGCTATTTAGGGTGTTG+AGG 0.569842 6_1:-79172948 Msa0894070:CDS
AATGGAGAAATAACTCTCAA+AGG 0.571243 6_1:-79172988 Msa0894070:CDS
ATAGCACAGCAATAGAATGA+AGG 0.574698 6_1:+79172962 None:intergenic
TTGGCTACGACTTCTTACAT+TGG 0.575246 6_1:-79170494 Msa0894070:CDS
AAGCTTACATGAGTGAGGCC+AGG 0.576657 6_1:-79170592 Msa0894070:CDS
CCAATTGAAGATATCACTTG+TGG 0.580452 6_1:+79170457 None:intergenic
ATTAAGTTGACTTTCTTCAA+CGG 0.581942 6_1:+79173099 None:intergenic
TAAGAAGTCGTAGCCAACAC+CGG 0.589439 6_1:+79170500 None:intergenic
AAGAAGTCGTAGCCAACACC+GGG 0.590372 6_1:+79170501 None:intergenic
ACCAAAGATTCTGAAGCATA+CGG 0.593001 6_1:+79173647 None:intergenic
ATTGGGTTGCAATTGACTCA+AGG 0.594526 6_1:+79172075 None:intergenic
ACATTGATCATAGATGTTGA+GGG 0.599537 6_1:-79172182 Msa0894070:CDS
GACGACACGTATGATGCATA+CGG 0.603543 6_1:-79171601 Msa0894070:CDS
TTTCCACCCTAGCGTTTGGG+GGG 0.604138 6_1:-79173681 Msa0894070:CDS
TAATGAAATTCTACTTACGT+TGG 0.604203 6_1:-79171937 Msa0894070:CDS
AACCAATTCAAGGACAAGCA+AGG 0.604565 6_1:-79172218 Msa0894070:CDS
TCTTCATAAACATCCAAGAG+TGG 0.606426 6_1:+79171226 None:intergenic
CTTTATATATAGGTGGTGGA+AGG 0.614852 6_1:-79171767 Msa0894070:intron
ATTTCCACCCTAGCGTTTGG+GGG 0.619288 6_1:-79173682 Msa0894070:CDS
AATACATCAACAATATCAAG+TGG 0.619468 6_1:-79170527 Msa0894070:CDS
AAACCTCAATAAAACGCGAA+AGG 0.623927 6_1:+79169914 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 6_1:-79169989 Msa0894070:CDS
ACCATGAATCATCATATGCG+AGG 0.651705 6_1:+79172139 None:intergenic
ATAGTTAACATTCAACCACC+TGG 0.654774 6_1:+79170574 None:intergenic
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6_1:-79170381 Msa0894070:intron
AGTCCAAGCTTACATGAGTG+AGG 0.665674 6_1:-79170597 Msa0894070:CDS
GATAACTACACACATTCCGA+AGG 0.666041 6_1:-79169877 Msa0894070:CDS
CTTACATGAGTGAGGCCAGG+TGG 0.678940 6_1:-79170589 Msa0894070:CDS
TAACTATATACCAACAACAG+AGG 0.706002 6_1:-79170558 Msa0894070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAATATATATATTACA+AGG + chr6_1:79170262-79170281 None:intergenic 10.0%
!!! TAATTTTTTAATTTTGATCA+TGG - chr6_1:79170794-79170813 Msa0894070:intron 10.0%
!!! AATTTTTTAATTTTGATCAT+GGG - chr6_1:79170795-79170814 Msa0894070:intron 10.0%
!!! TAATTGTTTTTACATAAAAT+AGG - chr6_1:79170956-79170975 Msa0894070:intron 10.0%
!!! ATTTAATTTTAAATTAAGGA+GGG + chr6_1:79171718-79171737 None:intergenic 10.0%
!!! AATTTAATTTTAAATTAAGG+AGG + chr6_1:79171719-79171738 None:intergenic 10.0%
!!! TTATAATGAAAATGAATTTT+AGG - chr6_1:79172247-79172266 Msa0894070:intron 10.0%
!! GAATCATTAATATAAATAAG+TGG + chr6_1:79170665-79170684 None:intergenic 15.0%
!!! ATTTTTTAATTTTGATCATG+GGG - chr6_1:79170796-79170815 Msa0894070:intron 15.0%
!!! TAATATAAACCTCTAAAAAA+TGG - chr6_1:79170825-79170844 Msa0894070:intron 15.0%
!!! TTTTGTTACTAAAAATGTAA+AGG + chr6_1:79170863-79170882 None:intergenic 15.0%
!! TGATTATGAAGTAATATTAA+CGG - chr6_1:79171107-79171126 Msa0894070:intron 15.0%
!! ATAAAGACCAAAAATATTAT+AGG + chr6_1:79171769-79171788 None:intergenic 15.0%
!!! TATTTTTGGTCTTTATATAT+AGG - chr6_1:79171773-79171792 Msa0894070:intron 15.0%
!!! ATTAAATAATAACTTTTAGG+TGG - chr6_1:79172129-79172148 Msa0894070:CDS 15.0%
!! TCTTATCATATATTTATACA+CGG - chr6_1:79172190-79172209 Msa0894070:CDS 15.0%
!! TTGAACAAAAGATTATATAT+TGG - chr6_1:79172788-79172807 Msa0894070:intron 15.0%
!! CATATTTACAAAAAATACAT+AGG - chr6_1:79172866-79172885 Msa0894070:intron 15.0%
!! AATATAGTAGTATTGTTAAT+AGG + chr6_1:79172907-79172926 None:intergenic 15.0%
!! TTTAATTACAATTTACAAAG+TGG - chr6_1:79173293-79173312 Msa0894070:intron 15.0%
!! AATATAATAAGATGACATAA+TGG - chr6_1:79173340-79173359 Msa0894070:intron 15.0%
!! TATGTTATGAAAAGTGATTA+AGG - chr6_1:79169995-79170014 Msa0894070:CDS 20.0%
!! GTAAAAAGATCCTATATTAT+TGG + chr6_1:79170290-79170309 None:intergenic 20.0%
!! GGAATTTGATATAAATATTG+CGG - chr6_1:79170369-79170388 Msa0894070:intron 20.0%
!! GCAAATTGATAAACTAAAAA+AGG - chr6_1:79170393-79170412 Msa0894070:CDS 20.0%
!! AATTGATAAACTAAAAAAGG+AGG - chr6_1:79170396-79170415 Msa0894070:CDS 20.0%
!!! AAAGTATTAATTTGACGATT+AGG + chr6_1:79170763-79170782 None:intergenic 20.0%
!!! ATACTTAAACCATTTTTTAG+AGG + chr6_1:79170837-79170856 None:intergenic 20.0%
!!! TGTTTTTACATAAAATAGGA+AGG - chr6_1:79170960-79170979 Msa0894070:intron 20.0%
!!! CTAATTGCCTATAATATTTT+TGG - chr6_1:79171759-79171778 Msa0894070:intron 20.0%
!!! GTTTTTCTATCTCTAAATTT+TGG + chr6_1:79172064-79172083 None:intergenic 20.0%
!!! TAATGAAAATGAATTTTAGG+TGG - chr6_1:79172250-79172269 Msa0894070:intron 20.0%
!!! AATGAAAATGAATTTTAGGT+GGG - chr6_1:79172251-79172270 Msa0894070:intron 20.0%
!!! TGTTATCAGAATGAAATTTT+AGG - chr6_1:79172499-79172518 Msa0894070:intron 20.0%
!!! TTTTGTTGAACTATTATCTA+CGG + chr6_1:79172826-79172845 None:intergenic 20.0%
!!! ATTGTTCATTTTTGTAAACA+AGG - chr6_1:79173258-79173277 Msa0894070:intron 20.0%
!! CTTATTATATTAACTCTTGA+CGG + chr6_1:79173331-79173350 None:intergenic 20.0%
! GTTGTTCACGTAAAAAAAAA+GGG + chr6_1:79169941-79169960 None:intergenic 25.0%
! TGTTGTTCACGTAAAAAAAA+AGG + chr6_1:79169942-79169961 None:intergenic 25.0%
! ATTGCTAAAAAATAACCCTT+TGG + chr6_1:79170100-79170119 None:intergenic 25.0%
!!! AAGGGTTATTTTTTAGCAAT+AGG - chr6_1:79170100-79170119 Msa0894070:intron 25.0%
! GCAATGTTAGTAATATTAAG+CGG + chr6_1:79170206-79170225 None:intergenic 25.0%
! TTCAAGAATGCCAATAATAT+AGG - chr6_1:79170277-79170296 Msa0894070:intron 25.0%
!!! ATTAAGTTGACTTTCTTCAA+CGG + chr6_1:79170454-79170473 None:intergenic 25.0%
!! AGACGAAATTAATCAAGTTT+TGG - chr6_1:79170513-79170532 Msa0894070:CDS 25.0%
! TTGAGTAAAACAAACTTGTA+TGG - chr6_1:79170713-79170732 Msa0894070:intron 25.0%
! TGAAGTAATCTTTATGGTTT+AGG - chr6_1:79171130-79171149 Msa0894070:intron 25.0%
!!! GTGTTTCTAAAGTATGAAAA+AGG + chr6_1:79171195-79171214 None:intergenic 25.0%
! CGTAAGTAGAATTTCATTAT+GGG + chr6_1:79171612-79171631 None:intergenic 25.0%
! ACGTAAGTAGAATTTCATTA+TGG + chr6_1:79171613-79171632 None:intergenic 25.0%
! TAATGAAATTCTACTTACGT+TGG - chr6_1:79171613-79171632 Msa0894070:CDS 25.0%
!!! TTTTGGTCTTTATATATAGG+TGG - chr6_1:79171776-79171795 Msa0894070:intron 25.0%
!! TGAGTTAGAACTTTTTACTA+AGG - chr6_1:79171981-79172000 Msa0894070:CDS 25.0%
!! TTTTTACTAAGGCAATTGAA+AGG - chr6_1:79171992-79172011 Msa0894070:CDS 25.0%
!! GTCAAATTTTGTCAACAAAA+GGG - chr6_1:79172212-79172231 Msa0894070:CDS 25.0%
!!! TTCTTTTAAGAAGTGGTTAA+TGG + chr6_1:79172388-79172407 None:intergenic 25.0%
!!! CTATATTTTTGAACTGTCAT+TGG + chr6_1:79172935-79172954 None:intergenic 25.0%
! AATACATCAACAATATCAAG+TGG - chr6_1:79173023-79173042 Msa0894070:CDS 25.0%
! ATTTCACACAATATTCTTTG+TGG - chr6_1:79173215-79173234 Msa0894070:intron 25.0%
! ATACTTGGAATGTTATATGA+GGG - chr6_1:79173483-79173502 Msa0894070:intron 25.0%
! TTATATGAGGGAATATGATA+TGG - chr6_1:79173495-79173514 Msa0894070:intron 25.0%
!!! AAGCATTGTCAATTTTCTTT+TGG + chr6_1:79173546-79173565 None:intergenic 25.0%
! AAAAGAAAATTGACAATGCT+TGG - chr6_1:79173545-79173564 Msa0894070:intron 25.0%
! ATATAAATGAGGAATGTCTT+AGG - chr6_1:79173572-79173591 Msa0894070:intron 25.0%
! AAACTTAATGGAACTTTAGT+TGG + chr6_1:79173598-79173617 None:intergenic 25.0%
GAATAAAACCAAGAGAAAGT+AGG - chr6_1:79170055-79170074 Msa0894070:CDS 30.0%
GCAATGTGTAATATCTATGT+TGG + chr6_1:79170151-79170170 None:intergenic 30.0%
TATTAATCATACGATCCAAG+TGG + chr6_1:79170181-79170200 None:intergenic 30.0%
!!! TGCATGTTTTGATTACATAC+AGG - chr6_1:79170348-79170367 Msa0894070:intron 30.0%
! AATTGACTCAATATGTCGTT+TGG - chr6_1:79170471-79170490 Msa0894070:CDS 30.0%
! ATTGACTCAATATGTCGTTT+GGG - chr6_1:79170472-79170491 Msa0894070:CDS 30.0%
!!! AGTTTTGGAAGATATTCACA+AGG - chr6_1:79170528-79170547 Msa0894070:CDS 30.0%
! CACAAGGATTTTGTTCAAAA+TGG - chr6_1:79170544-79170563 Msa0894070:CDS 30.0%
AATGGAGAAATAACTCTCAA+AGG - chr6_1:79170562-79170581 Msa0894070:CDS 30.0%
!! ATTCTATTGCTGTGCTATTT+AGG - chr6_1:79170593-79170612 Msa0894070:CDS 30.0%
!! TTCTATTGCTGTGCTATTTA+GGG - chr6_1:79170594-79170613 Msa0894070:CDS 30.0%
TAAGTGGAGATATAAATACC+AGG + chr6_1:79170649-79170668 None:intergenic 30.0%
!! GGATAATGGGTTGTTTAATA+TGG + chr6_1:79171004-79171023 None:intergenic 30.0%
TAACGGTGAAGTAATCTTTA+TGG - chr6_1:79171124-79171143 Msa0894070:intron 30.0%
AAGGTTCTTCCTAAATAAGA+TGG + chr6_1:79171176-79171195 None:intergenic 30.0%
AGATGTATTCAACCAATTCA+AGG - chr6_1:79171322-79171341 Msa0894070:intron 30.0%
AACATTGATCATAGATGTTG+AGG - chr6_1:79171367-79171386 Msa0894070:intron 30.0%
ACATTGATCATAGATGTTGA+GGG - chr6_1:79171368-79171387 Msa0894070:intron 30.0%
! GATTCATGGTGAGAAAATTT+TGG - chr6_1:79171424-79171443 Msa0894070:intron 30.0%
! ATTCCTTTTGATGTAGGTTT+TGG + chr6_1:79171661-79171680 None:intergenic 30.0%
AACCTACATCAAAAGGAATT+TGG - chr6_1:79171662-79171681 Msa0894070:CDS 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6_1:79171667-79171686 None:intergenic 30.0%
! ATTTTAAATTAAGGAGGGTG+TGG + chr6_1:79171713-79171732 None:intergenic 30.0%
CTAAAAAACTACCTTATGCA+CGG - chr6_1:79171818-79171837 Msa0894070:intron 30.0%
TAAAAAACTACCTTATGCAC+GGG - chr6_1:79171819-79171838 Msa0894070:intron 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6_1:79171846-79171865 Msa0894070:intron 30.0%
GTCGTCAATGTATGATAAAA+TGG + chr6_1:79171935-79171954 None:intergenic 30.0%
! GGTCAAATTTTGTCAACAAA+AGG - chr6_1:79172211-79172230 Msa0894070:CDS 30.0%
TAGAGAAACTTCATGTAATC+CGG + chr6_1:79172300-79172319 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+TGG + chr6_1:79172395-79172414 None:intergenic 30.0%
CTATGTATCTATACGAAGAA+TGG + chr6_1:79172538-79172557 None:intergenic 30.0%
TTCTAATCACAAGATATGCT+AGG + chr6_1:79172563-79172582 None:intergenic 30.0%
CAAAAAATACATAGGAGTTC+AGG - chr6_1:79172874-79172893 Msa0894070:intron 30.0%
TAACTATATACCAACAACAG+AGG - chr6_1:79172992-79173011 Msa0894070:CDS 30.0%
CACAAGTGATATCTTCAATT+GGG - chr6_1:79173094-79173113 Msa0894070:CDS 30.0%
AAACAATTCGAGCAAAAAAG+AGG - chr6_1:79173448-79173467 Msa0894070:intron 30.0%
CATACTTGGAATGTTATATG+AGG - chr6_1:79173482-79173501 Msa0894070:intron 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG + chr6_1:79173533-79173552 None:intergenic 30.0%
TGCTTGGAAAGATATAAATG+AGG - chr6_1:79173561-79173580 Msa0894070:intron 30.0%
ACACACGTCAAAAAACTTAA+TGG + chr6_1:79173610-79173629 None:intergenic 30.0%
!! ACCAAAGATTCTGAAGCATA+CGG + chr6_1:79169906-79169925 None:intergenic 35.0%
TTAGCAATAGGAATGAAACC+TGG - chr6_1:79170112-79170131 Msa0894070:intron 35.0%
ACTAACATTGCACACTCATA+AGG - chr6_1:79170215-79170234 Msa0894070:intron 35.0%
ATAGCACAGCAATAGAATGA+AGG + chr6_1:79170591-79170610 None:intergenic 35.0%
AAAATAGGAAGGATCATCGT+AGG - chr6_1:79170971-79170990 Msa0894070:intron 35.0%
CTGAACATTACACGGATAAT+GGG + chr6_1:79171017-79171036 None:intergenic 35.0%
TCTGAACATTACACGGATAA+TGG + chr6_1:79171018-79171037 None:intergenic 35.0%
TTTAGGCCAGTTTACCTATA+GGG - chr6_1:79171147-79171166 Msa0894070:intron 35.0%
AAATAAGATGGCTACCCTAT+AGG + chr6_1:79171164-79171183 None:intergenic 35.0%
! ATAGGGTAGCCATCTTATTT+AGG - chr6_1:79171164-79171183 Msa0894070:intron 35.0%
ATGATTGTTCAACATTGTCG+TGG - chr6_1:79171281-79171300 Msa0894070:CDS 35.0%
!! TGGTGAGAAAATTTTGGAAG+AGG - chr6_1:79171430-79171449 Msa0894070:intron 35.0%
TCTACTTACGTTGGCAAAAT+TGG - chr6_1:79171622-79171641 Msa0894070:CDS 35.0%
TGGTCTTTATATATAGGTGG+TGG - chr6_1:79171779-79171798 Msa0894070:intron 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6_1:79171783-79171802 Msa0894070:intron 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6_1:79171845-79171864 Msa0894070:intron 35.0%
!!! ATGTTGCTTTTGGGTTATGA+CGG - chr6_1:79171855-79171874 Msa0894070:intron 35.0%
TTCCTTGCTTGACAATATTG+AGG + chr6_1:79171892-79171911 None:intergenic 35.0%
TTGTCAAGCAAGGAAAATGA+TGG - chr6_1:79171897-79171916 Msa0894070:CDS 35.0%
TAGGTGGGATATTAGTTGTT+TGG - chr6_1:79172266-79172285 Msa0894070:intron 35.0%
TAGTTGTTTGGATGATCTTC+CGG - chr6_1:79172278-79172297 Msa0894070:intron 35.0%
GTTTCTCTATAAACCACTCT+TGG - chr6_1:79172311-79172330 Msa0894070:intron 35.0%
TCTTCATAAACATCCAAGAG+TGG + chr6_1:79172327-79172346 None:intergenic 35.0%
ATAGTTAACATTCAACCACC+TGG + chr6_1:79172979-79172998 None:intergenic 35.0%
AACAATATCAAGTGGTTACC+CGG - chr6_1:79173031-79173050 Msa0894070:CDS 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_1:79173061-79173080 Msa0894070:CDS 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_1:79173062-79173081 Msa0894070:CDS 35.0%
CCAATTGAAGATATCACTTG+TGG + chr6_1:79173096-79173115 None:intergenic 35.0%
CCACAAGTGATATCTTCAAT+TGG - chr6_1:79173093-79173112 Msa0894070:CDS 35.0%
! GCAGCAGCATTAACAATTTT+CGG + chr6_1:79173131-79173150 None:intergenic 35.0%
AAACCTCAATAAAACGCGAA+AGG + chr6_1:79173639-79173658 None:intergenic 35.0%
GACGAGCAAATCATTAATGT+AGG + chr6_1:79173710-79173729 None:intergenic 35.0%
TCCGTATGCTTCAGAATCTT+TGG - chr6_1:79169902-79169921 Msa0894070:CDS 40.0%
! TAGCTCTACCTACTTTCTCT+TGG + chr6_1:79170066-79170085 None:intergenic 40.0%
AGCTATAGCAAACACTCCAA+AGG - chr6_1:79170081-79170100 Msa0894070:CDS 40.0%
GCTATAGCAAACACTCCAAA+GGG - chr6_1:79170082-79170101 Msa0894070:CDS 40.0%
! GGAATGAAACCTGGTGTTTT+AGG - chr6_1:79170121-79170140 Msa0894070:intron 40.0%
GTTGGAAATCCTAAAACACC+AGG + chr6_1:79170133-79170152 None:intergenic 40.0%
AATCATACGATCCAAGTGGT+TGG + chr6_1:79170177-79170196 None:intergenic 40.0%
GCGAATAATGTAAAGAACCG+AGG + chr6_1:79171042-79171061 None:intergenic 40.0%
GTTTAGGCCAGTTTACCTAT+AGG - chr6_1:79171146-79171165 Msa0894070:intron 40.0%
AACCAATTCAAGGACAAGCA+AGG - chr6_1:79171332-79171351 Msa0894070:intron 40.0%
TTCCTTGCTTGTCCTTGAAT+TGG + chr6_1:79171337-79171356 None:intergenic 40.0%
ACCATGAATCATCATATGCG+AGG + chr6_1:79171414-79171433 None:intergenic 40.0%
!!! GAGGCATTGACTTTTACTTC+TGG - chr6_1:79171449-79171468 Msa0894070:intron 40.0%
! ATTGGGTTGCAATTGACTCA+AGG + chr6_1:79171478-79171497 None:intergenic 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6_1:79171591-79171610 None:intergenic 40.0%
GCTCCAAAACCTACATCAAA+AGG - chr6_1:79171655-79171674 Msa0894070:CDS 40.0%
AGCCTCAATATTGTCAAGCA+AGG - chr6_1:79171887-79171906 Msa0894070:CDS 40.0%
GAGCAAGAAGTGAAGAAAGA+AGG - chr6_1:79172351-79172370 Msa0894070:intron 40.0%
TTCATGTACTCCTCTGTTGT+TGG + chr6_1:79173005-79173024 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_1:79173056-79173075 Msa0894070:CDS 40.0%
! AGGACATGTTGCTTCATACT+TGG - chr6_1:79173468-79173487 Msa0894070:intron 40.0%
!! CAACCTTTCGCGTTTTATTG+AGG - chr6_1:79173633-79173652 Msa0894070:intron 40.0%
GATAACTACACACATTCCGA+AGG - chr6_1:79173673-79173692 Msa0894070:CDS 40.0%
GTAGGTCTTCATTAGTCCTT+CGG + chr6_1:79173692-79173711 None:intergenic 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6_1:79169866-79169885 Msa0894070:CDS 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6_1:79170602-79170621 Msa0894070:CDS 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6_1:79170610-79170629 Msa0894070:CDS 45.0%
CATGGTCTTTACGTTTCACC+TGG - chr6_1:79170628-79170647 Msa0894070:intron 45.0%
AGGAAGGATCATCGTAGGAT+CGG - chr6_1:79170976-79170995 Msa0894070:intron 45.0%
CCGAGGATCTGAACATTACA+CGG + chr6_1:79171025-79171044 None:intergenic 45.0%
CCGTGTAATGTTCAGATCCT+CGG - chr6_1:79171022-79171041 Msa0894070:intron 45.0%
TGGCTACCCTATAGGTAAAC+TGG + chr6_1:79171156-79171175 None:intergenic 45.0%
GCCTCGCATATGATGATTCA+TGG - chr6_1:79171410-79171429 Msa0894070:intron 45.0%
CGCAAGAGAAGGACTCAATT+GGG + chr6_1:79171495-79171514 None:intergenic 45.0%
TCGCAAGAGAAGGACTCAAT+TGG + chr6_1:79171496-79171515 None:intergenic 45.0%
!! TTGACTTGTGTCGCAAGAGA+AGG + chr6_1:79171506-79171525 None:intergenic 45.0%
CTTGCGACACAAGTCAAACA+TGG - chr6_1:79171509-79171528 Msa0894070:intron 45.0%
CAAAAACTTGCCTAGGCTAG+AGG - chr6_1:79171550-79171569 Msa0894070:intron 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6_1:79171789-79171808 Msa0894070:intron 45.0%
GACGACACGTATGATGCATA+CGG - chr6_1:79171949-79171968 Msa0894070:CDS 45.0%
AGTCCAAGCTTACATGAGTG+AGG - chr6_1:79172953-79172972 Msa0894070:CDS 45.0%
TAAGAAGTCGTAGCCAACAC+CGG + chr6_1:79173053-79173072 None:intergenic 45.0%
TGCTGTTCATTGCAGGCTTA+GGG - chr6_1:79173148-79173167 Msa0894070:CDS 45.0%
GGATGAAATTGTGTCTAGCG+AGG - chr6_1:79173169-79173188 Msa0894070:CDS 45.0%
!!! TCATTTTTTATATTTTAATT+TGG - chr6_1:79170683-79170702 Msa0894070:intron 5.0%
!!! TTCAATTTAATTTTAAATTA+AGG + chr6_1:79171722-79171741 None:intergenic 5.0%
!!! AAAATTAAATAATAACTTTT+AGG - chr6_1:79172126-79172145 Msa0894070:CDS 5.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6_1:79169865-79169884 Msa0894070:CDS 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6_1:79169867-79169886 Msa0894070:CDS 50.0%
ATTTCCACCCTAGCGTTTGG+GGG - chr6_1:79169868-79169887 Msa0894070:CDS 50.0%
CACATTGCACACCAACCACT+TGG - chr6_1:79170163-79170182 Msa0894070:intron 50.0%
! CTAGGCAAGTTTTTGCGCAG+AGG + chr6_1:79171545-79171564 None:intergenic 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6_1:79171543-79171562 Msa0894070:intron 50.0%
TAGCTTCTTGCCTCTAGCCT+AGG + chr6_1:79171563-79171582 None:intergenic 50.0%
ACTACTCTGTCCCGTGCATA+AGG + chr6_1:79171832-79171851 None:intergenic 50.0%
TGGCCTCACTCATGTAAGCT+TGG + chr6_1:79172959-79172978 None:intergenic 50.0%
AAGCTTACATGAGTGAGGCC+AGG - chr6_1:79172958-79172977 Msa0894070:CDS 50.0%
ATCAAGTGGTTACCCGGTGT+TGG - chr6_1:79173037-79173056 Msa0894070:CDS 50.0%
AAGAAGTCGTAGCCAACACC+GGG + chr6_1:79173052-79173071 None:intergenic 50.0%
ATGCTGCTGCTGTTCATTGC+AGG - chr6_1:79173141-79173160 Msa0894070:CDS 50.0%
CTGCTGTTCATTGCAGGCTT+AGG - chr6_1:79173147-79173166 Msa0894070:CDS 50.0%
TTTCCACCCTAGCGTTTGGG+GGG - chr6_1:79169869-79169888 Msa0894070:CDS 55.0%
AGAAGTCCCCCCAAACGCTA+GGG + chr6_1:79169878-79169897 None:intergenic 55.0%
AAGAAGTCCCCCCAAACGCT+AGG + chr6_1:79169879-79169898 None:intergenic 55.0%
CTTACATGAGTGAGGCCAGG+TGG - chr6_1:79172961-79172980 Msa0894070:CDS 55.0%
AGTCCCCCCAAACGCTAGGG+TGG + chr6_1:79169875-79169894 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 79169825 79173747 79169825 ID=Msa0894070;Name=Msa0894070
chr6_1 mRNA 79169825 79173747 79169825 ID=Msa0894070-mRNA-1;Parent=Msa0894070;Name=Msa0894070-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|7|0|548
chr6_1 exon 79173649 79173747 79173649 ID=Msa0894070-mRNA-1:exon:13257;Parent=Msa0894070-mRNA-1
chr6_1 exon 79172923 79173202 79172923 ID=Msa0894070-mRNA-1:exon:13256;Parent=Msa0894070-mRNA-1
chr6_1 exon 79171876 79172248 79171876 ID=Msa0894070-mRNA-1:exon:13255;Parent=Msa0894070-mRNA-1
chr6_1 exon 79171559 79171777 79171559 ID=Msa0894070-mRNA-1:exon:13254;Parent=Msa0894070-mRNA-1
chr6_1 exon 79171165 79171303 79171165 ID=Msa0894070-mRNA-1:exon:13253;Parent=Msa0894070-mRNA-1
chr6_1 exon 79170382 79170630 79170382 ID=Msa0894070-mRNA-1:exon:13252;Parent=Msa0894070-mRNA-1
chr6_1 exon 79169825 79170112 79169825 ID=Msa0894070-mRNA-1:exon:13251;Parent=Msa0894070-mRNA-1
chr6_1 CDS 79173649 79173747 79173649 ID=Msa0894070-mRNA-1:cds;Parent=Msa0894070-mRNA-1
chr6_1 CDS 79172923 79173202 79172923 ID=Msa0894070-mRNA-1:cds;Parent=Msa0894070-mRNA-1
chr6_1 CDS 79171876 79172248 79171876 ID=Msa0894070-mRNA-1:cds;Parent=Msa0894070-mRNA-1
chr6_1 CDS 79171559 79171777 79171559 ID=Msa0894070-mRNA-1:cds;Parent=Msa0894070-mRNA-1
chr6_1 CDS 79171165 79171303 79171165 ID=Msa0894070-mRNA-1:cds;Parent=Msa0894070-mRNA-1
chr6_1 CDS 79170382 79170630 79170382 ID=Msa0894070-mRNA-1:cds;Parent=Msa0894070-mRNA-1
chr6_1 CDS 79169825 79170112 79169825 ID=Msa0894070-mRNA-1:cds;Parent=Msa0894070-mRNA-1
Gene Sequence

>Msa0894070

ATGTCTCATAACGACAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGAATTTGATATAAATATTGCGGCGCAAATTGATAAACTAAAAAAGGAGGTTAGACAAATGATTGTCTCAAAAATTGAGAATCCGTTGAAGAAAGTCAACTTAATTGACTCAATATGTCGTTTGGGTGTGAGCTATTATTTTGAAGACGAAATTAATCAAGTTTTGGAAGATATTCACAAGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGCAACCTTCATTCTATTGCTGTGCTATTTAGGGTGTTGAGGCAACATGGTCTTTACGTTTCACCTGATGTATTCAACCAATTCAAGGACAAGCAAGGAAATTTTAGTGAAACATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCGCATATGATGATTCATGGTGAGAAAATTTTGGAAGAGGCATTGACTTTTACTTCTGGTCACCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGACACAAGTCAAACATGGCTTAAGACATCCTCTGCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAACCTACATCAAAAGGAATTTGGAAACATTTGCAAGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAATGATGGCAAAAGTAATCTCCATTTTATCATACATTGACGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGCAATTGAAAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATAGAGCAAGAAGTGAAGAAAGAAGGAAGATTATACGCCATTAACCACTTCTTAAAAGAATTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAACTATATACCAACAACAGAGGAGTACATGAATACATCAACAATATCAAGTGGTTACCCGGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCCACAAGTGATATCTTCAATTGGGTAACTAACAATCCGAAAATTGTTAATGCTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCGAGCAAAAAAGAGGACATGTTGCTTCATACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTAAGTTTTTTGACGTGTGTTCTCAACCTTTCGCGTTTTATTGAGGTTTTTTACAAAGATGAAGATAACTACACACATTCCGAAGGACTAATGAAGACCTACATTAATGATTTGCTCGTCAATCCCATCCCAACATGA
Protein sequence

>Msa0894070

MSHNDKSVLQRNVADFHPSVWGDFFIPYASESLEFDINIAAQIDKLKKEVRQMIVSKIENPLKKVNLIDSICRLGVSYYFEDEINQVLEDIHKDFVQNGEITLKGNLHSIAVLFRVLRQHGLYVSPDVFNQFKDKQGNFSETLIIDVEGMLNLYEASHMMIHGEKILEEALTFTSGHLESIATQLSPSLATQVKHGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQNLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKMMAKVISILSYIDDTYDAYGTIDELELFTKAIERWDISCLDDLPDYMKFLYKPLLDVYEEIEQEVKKEGRLYAINHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPVLATTSYIGMGNIATSDIFNWVTNNPKIVNAAAVHCRLRDEIVSSEQKRGHVASYLECYMREYDMDREAAIQECQKKIDNAWKDINEECLRPTKVPLSFLTCVLNLSRFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT*