AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0995570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0995570 MtrunA17_Chr7g0236991 68.649 555 171 1 1 555 1 552 0.0 814
Msa0995570 MtrunA17_Chr7g0237001 68.468 555 172 1 1 555 1 552 0.0 811
Msa0995570 MtrunA17_Chr7g0237041 68.468 555 172 1 1 555 1 552 0.0 811
Msa0995570 MtrunA17_Chr7g0237081 68.468 555 172 1 1 555 1 552 0.0 811
Msa0995570 MtrunA17_Chr7g0237051 68.468 555 172 1 1 555 1 552 0.0 811
Msa0995570 MtrunA17_Chr6g0465441 68.116 552 176 0 4 555 1 552 0.0 810
Msa0995570 MtrunA17_Chr5g0425371 69.550 555 166 1 1 555 1 552 0.0 803
Msa0995570 MtrunA17_Chr6g0465911 67.928 555 175 1 1 555 1 552 0.0 795
Msa0995570 MtrunA17_Chr4g0024691 68.716 553 173 0 3 555 8 560 0.0 795
Msa0995570 MtrunA17_Chr6g0451711 66.906 556 183 1 1 555 1 556 0.0 795
Msa0995570 MtrunA17_Chr6g0466051 67.748 555 176 1 1 555 1 552 0.0 793
Msa0995570 MtrunA17_Chr3g0105071 67.027 555 182 1 1 554 1 555 0.0 783
Msa0995570 MtrunA17_Chr3g0082691 65.505 545 187 1 12 555 8 552 0.0 755
Msa0995570 MtrunA17_Chr6g0465851 69.052 517 160 0 39 555 1 517 0.0 754
Msa0995570 MtrunA17_Chr7g0236961 69.416 497 152 0 59 555 1 497 0.0 742
Msa0995570 MtrunA17_Chr5g0431571 65.993 544 184 1 12 554 4 547 0.0 741
Msa0995570 MtrunA17_Chr5g0431651 64.093 557 192 3 1 555 1 551 0.0 741
Msa0995570 MtrunA17_Chr7g0237011 69.416 497 152 0 59 555 1 497 0.0 740
Msa0995570 MtrunA17_Chr4g0042111 57.194 556 235 2 2 555 7 561 0.0 662
Msa0995570 MtrunA17_Chr7g0236971 69.250 400 123 0 156 555 1 400 0.0 602
Msa0995570 MtrunA17_Chr6g0465981 68.351 376 116 1 1 376 1 373 0.0 541
Msa0995570 MtrunA17_Chr6g0465871 68.351 376 116 1 1 376 1 373 0.0 541
Msa0995570 MtrunA17_Chr6g0466081 68.351 376 116 1 1 376 1 373 0.0 541
Msa0995570 MtrunA17_Chr6g0466111 70.118 338 101 0 39 376 1 338 1.84e-175 499
Msa0995570 MtrunA17_Chr6g0465931 69.822 338 102 0 39 376 1 338 2.19e-174 496
Msa0995570 MtrunA17_Chr2g0319041 45.055 546 292 7 15 554 12 555 1.68e-172 499
Msa0995570 MtrunA17_Chr8g0336181 45.803 548 289 6 13 554 9 554 3.13e-169 491
Msa0995570 MtrunA17_Chr7g0236951 70.476 315 93 0 59 373 1 315 2.29e-167 477
Msa0995570 MtrunA17_Chr7g0237031 70.476 315 93 0 59 373 1 315 4.92e-167 476
Msa0995570 MtrunA17_Chr2g0319051 45.010 511 275 6 48 554 4 512 3.95e-161 469
Msa0995570 MtrunA17_Chr6g0466031 66.023 259 88 0 297 555 1 259 1.14e-122 361
Msa0995570 MtrunA17_Chr4g0008621 44.794 413 223 5 2 410 7 418 2.25e-122 367
Msa0995570 MtrunA17_Chr5g0445511 66.946 239 79 0 151 389 1 239 9.81e-117 345
Msa0995570 MtrunA17_Chr2g0319071 37.718 517 272 10 44 556 19 489 1.75e-113 346
Msa0995570 MtrunA17_Chr4g0023911 34.615 546 346 4 13 554 41 579 7.71e-113 347
Msa0995570 MtrunA17_Chr7g0237061 61.004 259 78 2 297 555 1 236 2.44e-108 323
Msa0995570 MtrunA17_Chr2g0323131 36.117 515 306 9 49 556 67 565 2.03e-107 333
Msa0995570 MtrunA17_Chr2g0310331 35.490 541 339 6 17 555 53 585 4.55e-106 330
Msa0995570 MtrunA17_Chr2g0323151 35.583 489 298 5 71 555 4 479 6.66e-104 321
Msa0995570 MtrunA17_Chr8g0357411 33.091 550 359 5 8 555 46 588 1.81e-94 300
Msa0995570 MtrunA17_Chr7g0237071 68.812 202 63 0 59 260 1 202 7.63e-93 283
Msa0995570 MtrunA17_Chr6g0466021 64.706 204 69 1 1 204 1 201 5.27e-89 273
Msa0995570 MtrunA17_Chr4g0048921 32.039 515 337 6 44 554 64 569 7.74e-85 274
Msa0995570 MtrunA17_Chr4g0048911 30.727 550 368 10 5 548 14 556 1.21e-84 274
Msa0995570 MtrunA17_Chr7g0237021 68.421 171 54 0 385 555 1 171 7.84e-84 258
Msa0995570 MtrunA17_Chr7g0236941 68.421 171 54 0 385 555 1 171 7.84e-84 258
Msa0995570 MtrunA17_Chr6g0465941 66.667 171 57 0 385 555 1 171 2.15e-79 246
Msa0995570 MtrunA17_Chr6g0466121 66.667 171 57 0 385 555 1 171 2.15e-79 246
Msa0995570 MtrunA17_Chr6g0465991 66.667 171 57 0 385 555 1 171 2.15e-79 246
Msa0995570 MtrunA17_Chr6g0466091 66.667 171 57 0 385 555 1 171 2.15e-79 246
Msa0995570 MtrunA17_Chr6g0465881 66.082 171 58 0 385 555 1 171 1.32e-78 244
Msa0995570 MtrunA17_Chr2g0280581 29.714 525 342 9 42 547 2 518 3.09e-76 250
Msa0995570 MtrunA17_Chr2g0319081 40.123 324 175 7 234 554 118 425 4.15e-75 244
Msa0995570 MtrunA17_Chr2g0319081 36.957 138 84 2 1 135 3 140 3.91e-23 102
Msa0995570 MtrunA17_Chr5g0445501 61.404 171 66 0 385 555 1 171 1.31e-72 229
Msa0995570 MtrunA17_Chr2g0310401 32.477 428 286 2 130 555 5 431 1.65e-71 235
Msa0995570 MtrunA17_Chr3g0109001 30.123 488 316 8 63 534 21 499 1.61e-70 235
Msa0995570 MtrunA17_Chr7g0236921 64.331 157 52 1 403 555 1 157 1.02e-69 221
Msa0995570 MtrunA17_Chr3g0108941 29.240 513 335 10 54 550 13 513 1.72e-69 232
Msa0995570 MtrunA17_Chr3g0109021 30.242 496 321 9 54 534 13 498 4.34e-69 231
Msa0995570 MtrunA17_Chr3g0109031 29.592 490 332 8 54 534 13 498 1.48e-68 230
Msa0995570 MtrunA17_Chr6g0477111 29.938 481 313 8 73 538 6 477 1.94e-68 229
Msa0995570 MtrunA17_Chr3g0105691 29.796 490 331 7 54 534 46 531 2.31e-67 228
Msa0995570 MtrunA17_Chr3g0108991 29.839 496 323 9 54 534 13 498 1.08e-66 225
Msa0995570 MtrunA17_Chr3g0108951 29.839 496 323 9 54 534 13 498 1.08e-66 225
Msa0995570 MtrunA17_Chr3g0108981 29.560 477 313 6 73 534 6 474 5.24e-66 223
Msa0995570 MtrunA17_Chr3g0108961 29.560 477 313 6 73 534 6 474 5.24e-66 223
Msa0995570 MtrunA17_Chr7g0236931 62.745 153 54 1 403 555 1 150 1.86e-65 209
Msa0995570 MtrunA17_Chr3g0108971 29.769 477 311 8 73 534 6 473 3.35e-65 220
Msa0995570 MtrunA17_Chr3g0109011 29.560 477 312 8 73 534 6 473 4.49e-65 220
Msa0995570 MtrunA17_Chr3g0099031 29.412 510 337 9 54 550 13 512 4.63e-64 218
Msa0995570 MtrunA17_Chr6g0477121 29.024 410 280 6 133 534 10 416 4.97e-56 194
Msa0995570 MtrunA17_Chr7g0236981 62.222 135 48 1 1 135 1 132 4.95e-54 179
Msa0995570 MtrunA17_Chr7g0233861 64.662 133 38 1 198 330 35 158 3.84e-52 176
Msa0995570 MtrunA17_Chr7g0217361 33.667 300 198 1 255 553 8 307 1.11e-50 176
Msa0995570 MtrunA17_Chr8g0357221 37.551 245 144 5 9 251 47 284 2.85e-41 150
Msa0995570 MtrunA17_Chr5g0445521 62.766 94 35 0 1 94 1 94 3.44e-35 127
Msa0995570 MtrunA17_Chr5g0445401 71.579 95 23 2 166 257 1 94 2.69e-34 125
Msa0995570 MtrunA17_Chr8g0357231 29.730 259 180 2 298 555 1 258 7.95e-34 129
Msa0995570 MtrunA17_Chr3g0082711 48.696 115 42 1 441 555 1 98 2.56e-32 119
Msa0995570 MtrunA17_Chr2g0310121 24.806 516 346 16 70 554 275 779 3.04e-32 132
Msa0995570 MtrunA17_Chr3g0101681 25.430 523 334 17 70 554 276 780 8.04e-32 130
Msa0995570 MtrunA17_Chr7g0259881 28.625 269 162 7 73 313 232 498 1.07e-24 108
Msa0995570 MtrunA17_Chr7g0218001 30.370 270 154 7 73 310 349 616 3.12e-23 104
Msa0995570 MtrunA17_Chr7g0217351 29.032 217 145 5 46 258 62 273 7.75e-21 93.2
Msa0995570 MtrunA17_Chr2g0281651 25.725 276 196 6 233 505 43 312 4.67e-19 89.7
Msa0995570 MtrunA17_Chr7g0218041 31.250 240 138 7 120 334 3 240 6.95e-16 80.1
Msa0995570 MtrunA17_Chr2g0310411 33.333 123 72 4 10 131 51 164 4.18e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0995570 AT5G23960.2 40.110 546 320 5 13 555 3 544 9.63e-150 441
Msa0995570 AT5G23960.1 40.146 548 319 6 13 555 3 546 8.14e-149 439
Msa0995570 AT1G70080.1 37.634 558 338 7 5 554 54 609 4.45e-127 385
Msa0995570 AT3G14490.1 37.729 546 328 7 17 555 60 600 1.18e-120 369
Msa0995570 AT3G14520.1 36.549 539 334 5 22 555 68 603 2.63e-120 368
Msa0995570 AT1G31950.1 35.926 540 336 5 22 555 70 605 6.84e-119 364
Msa0995570 AT3G14540.1 36.735 539 333 4 22 555 65 600 1.76e-118 363
Msa0995570 AT1G31950.3 35.860 541 336 6 22 555 70 606 2.75e-118 362
Msa0995570 AT5G44630.1 35.231 562 349 7 1 554 1 555 9.54e-114 349
Msa0995570 AT1G33750.1 34.831 534 342 4 24 555 73 602 4.69e-113 349
Msa0995570 AT4G13300.1 36.872 537 328 7 25 554 20 552 5.55e-111 342
Msa0995570 AT3G32030.1 34.879 539 343 6 22 555 68 603 7.25e-111 343
Msa0995570 AT3G29410.1 34.622 543 347 6 17 555 64 602 4.17e-110 341
Msa0995570 AT4G20210.1 34.615 546 344 7 17 554 58 598 4.56e-110 341
Msa0995570 AT3G29190.1 34.766 535 323 9 38 555 75 600 8.12e-107 333
Msa0995570 AT4G20200.1 35.907 518 314 9 48 554 92 602 1.13e-106 332
Msa0995570 AT4G15870.1 34.657 554 336 9 9 554 61 596 2.30e-106 332
Msa0995570 AT4G13280.2 36.075 535 331 7 27 554 22 552 7.50e-105 326
Msa0995570 AT3G29410.2 34.800 500 320 4 59 555 1 497 3.24e-104 323
Msa0995570 AT4G16730.1 31.793 541 352 7 28 555 2 538 1.89e-99 311
Msa0995570 AT3G14540.2 37.220 446 273 3 22 463 65 507 8.02e-99 309
Msa0995570 AT4G20230.1 32.857 560 351 10 6 552 54 601 8.26e-99 312
Msa0995570 AT4G20230.2 32.857 560 351 10 6 552 66 613 8.73e-99 312
Msa0995570 AT1G31950.2 35.886 457 282 6 22 471 70 522 1.43e-98 309
Msa0995570 AT2G23230.2 33.700 546 347 9 16 551 55 595 3.80e-97 308
Msa0995570 AT4G16730.2 32.121 495 321 5 73 555 1 492 2.47e-95 300
Msa0995570 AT3G29110.1 34.312 545 347 9 17 554 55 595 2.56e-95 303
Msa0995570 AT2G23230.1 33.516 546 343 10 16 551 55 590 1.46e-94 301
Msa0995570 AT4G13280.1 34.953 535 307 9 27 554 22 522 2.19e-93 295
Msa0995570 AT1G66020.1 32.537 544 358 6 17 554 56 596 4.39e-93 297
Msa0995570 AT1G48800.1 31.319 546 359 9 17 552 63 602 7.71e-92 294
Msa0995570 AT2G24210.1 31.720 558 362 9 10 555 39 589 1.79e-91 292
Msa0995570 AT4G16740.1 31.351 555 358 10 12 555 21 563 7.65e-91 290
Msa0995570 AT1G61680.1 31.238 541 348 7 1 534 34 557 2.88e-88 283
Msa0995570 AT3G25820.1 31.059 557 360 10 15 555 45 593 5.19e-87 281
Msa0995570 AT3G25830.1 31.059 557 360 10 15 555 45 593 5.19e-87 281
Msa0995570 AT3G25810.1 31.206 564 353 12 15 555 45 596 1.81e-86 280
Msa0995570 AT1G61680.2 30.869 541 343 8 1 534 34 550 8.84e-85 274
Msa0995570 AT5G48110.1 37.647 340 207 5 216 554 2 337 1.91e-83 263
Msa0995570 AT1G48820.1 30.983 539 322 11 17 549 63 557 1.17e-80 263
Msa0995570 AT4G16740.2 35.393 356 212 6 12 357 21 368 2.99e-70 231
Msa0995570 AT3G25820.2 32.208 385 244 6 15 389 45 422 4.30e-65 219
Msa0995570 AT1G66020.2 34.417 369 233 6 17 379 56 421 7.81e-64 215
Msa0995570 AT4G16740.4 35.258 329 195 6 12 330 21 341 3.27e-62 209
Msa0995570 AT4G16740.3 35.258 329 195 6 12 330 21 341 3.27e-62 209
Msa0995570 AT3G25820.4 33.436 326 200 6 15 330 45 363 7.99e-56 193
Msa0995570 AT3G25820.3 33.436 326 200 6 15 330 45 363 7.99e-56 193
Msa0995570 AT1G61120.1 24.319 514 345 13 68 554 286 782 9.28e-30 125
Msa0995570 AT1G79460.1 23.121 519 350 19 70 554 274 777 2.31e-26 114
Msa0995570 AT4G02780.1 30.078 256 149 7 73 300 334 587 3.23e-22 101

Find 92 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTACGTTGGCAAAAT+TGG 0.135143 6_4:-71962078 Msa0995570:CDS
ATTCTATTTCTGTGCTATTT+AGG 0.140011 6_4:-71963018 Msa0995570:CDS
TTCTATTTCTGTGCTATTTA+GGG 0.183039 6_4:-71963017 Msa0995570:CDS
CTGCTGTTCATTGCAGGCTT+AGG 0.241228 6_4:-71960550 Msa0995570:CDS
AGCCTACATCAAAAGGAATT+TGG 0.257080 6_4:-71962038 Msa0995570:CDS
ACGTAAGTAGAATTTCATTA+TGG 0.259315 6_4:+71962090 None:intergenic
TCCGTATGCTTCAGAATCTT+TGG 0.269105 6_4:-71963765 Msa0995570:intron
GTCATCAATGTATGATAAAA+TGG 0.271835 6_4:+71961768 None:intergenic
ATGCTGCTGCTGTTCATTGC+AGG 0.286868 6_4:-71960556 Msa0995570:CDS
CAGATTTCCACCCTAGCGTT+TGG 0.305039 6_4:-71963802 Msa0995570:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.318717 6_4:-71963801 Msa0995570:CDS
AGACGAAATTAATCAAGTTT+TGG 0.321368 6_4:-71963098 Msa0995570:CDS
TTCCTTGCTTGTCCTTGAAT+TGG 0.334271 6_4:+71962366 None:intergenic
TAGTTGTTTGGATGATCTTC+CGG 0.341349 6_4:-71961421 Msa0995570:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6_4:-71961855 Msa0995570:CDS
TTATATGAGGGAATATGATA+TGG 0.360767 6_4:-71960199 Msa0995570:CDS
CCAATTGAAGATATCATTTG+TGG 0.372281 6_4:+71960604 None:intergenic
TTCATGTACTCCTCTGTTGT+TGG 0.374525 6_4:+71960695 None:intergenic
TGCTGTTCATTGCAGGCTTA+GGG 0.376798 6_4:-71960549 Msa0995570:CDS
CCACAAATGATATCTTCAAT+TGG 0.377027 6_4:-71960604 Msa0995570:CDS
CGTAAGTAGAATTTCATTAT+GGG 0.378944 6_4:+71962091 None:intergenic
AAACGTAATGGAACTTTAGT+TGG 0.382677 6_4:+71960099 None:intergenic
TAGGTGGGATATTAGTTGTT+TGG 0.387739 6_4:-71961433 Msa0995570:CDS
CGTACTTGGAATGTTATATG+AGG 0.388936 6_4:-71960212 Msa0995570:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6_4:+71962112 None:intergenic
GATTGACTCAATATGTCGTT+TGG 0.390339 6_4:-71963140 Msa0995570:CDS
AGGACATGTTGCTTCGTACT+TGG 0.399435 6_4:-71960226 Msa0995570:CDS
TCGCAAGAGAAGGACTCAAT+TGG 0.402637 6_4:+71962207 None:intergenic
ATATAAATGAGGAATGTCTT+AGG 0.410838 6_4:-71960122 Msa0995570:CDS
AAAAGAAAATTGACAATGCT+TGG 0.419595 6_4:-71960149 Msa0995570:CDS
TAGAGAAACTTCATGTAATC+CGG 0.427919 6_4:+71961402 None:intergenic
GTTTCTCTATAAACCACTCT+TGG 0.439981 6_4:-71961388 Msa0995570:CDS
GCTCCAAAGCCTACATCAAA+AGG 0.450495 6_4:-71962045 Msa0995570:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6_4:-71960636 Msa0995570:CDS
CACAAATGATATCTTCAATT+GGG 0.456797 6_4:-71960603 Msa0995570:CDS
ACTACTCTGTCCCGTGCATA+AGG 0.457542 6_4:+71961871 None:intergenic
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_4:-71960635 Msa0995570:CDS
TTCCTTGCTTGACAATATTG+AGG 0.465049 6_4:+71961811 None:intergenic
ATTGACTCAATATGTCGTTT+GGG 0.473862 6_4:-71963139 Msa0995570:CDS
ACCAAAATCAATGCTCATGT+TGG 0.476318 6_4:+71959955 None:intergenic
AGATGTATTCAACCAATTCA+AGG 0.477088 6_4:-71962378 Msa0995570:CDS
GAGCAAGAAGTGAAGAAAGA+AGG 0.477567 6_4:-71961348 Msa0995570:CDS
GCCTCGCATATGATGATTCA+TGG 0.478503 6_4:-71962290 Msa0995570:CDS
CGCAAGAGAAGGACTCAATT+GGG 0.484757 6_4:+71962208 None:intergenic
CCAAAATCAATGCTCATGTT+GGG 0.485248 6_4:+71959956 None:intergenic
AACAATATCAAGTGGTTACC+CGG 0.513550 6_4:-71960666 Msa0995570:CDS
ATCAATGCTCATGTTGGGAT+GGG 0.522554 6_4:+71959961 None:intergenic
CATGGTCTTTACGTTTCACC+TGG 0.523602 6_4:-71962983 Msa0995570:intron
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6_4:-71961911 Msa0995570:intron
AGCCTCAATATTGTCAAGCA+AGG 0.528176 6_4:-71961813 Msa0995570:CDS
CTGTGCTATTTAGGGTGTTG+AGG 0.528533 6_4:-71963009 Msa0995570:CDS
AATCAATGCTCATGTTGGGA+TGG 0.533171 6_4:+71959960 None:intergenic
TGGCCTCACTCATGTAAGCT+TGG 0.536408 6_4:+71960741 None:intergenic
ATCAAGTGGTTACCCGGTGT+TGG 0.539295 6_4:-71960660 Msa0995570:CDS
GATTTCCACCCTAGCGTTTG+GGG 0.542721 6_4:-71963800 Msa0995570:CDS
AATATTGATCATAGATGTTG+AGG 0.544202 6_4:-71962333 Msa0995570:CDS
TTGTCAAGCAAGGAAAATGA+TGG 0.545763 6_4:-71961803 Msa0995570:CDS
GCAAATTGATAAACTAAAAG+AGG 0.546970 6_4:-71963218 Msa0995570:CDS
TAGCTTCTTGCCTCTAGCCT+AGG 0.554871 6_4:+71962140 None:intergenic
CTTGCGAGACAAGTCAAACA+TGG 0.558555 6_4:-71962191 Msa0995570:CDS
GACAAGCAAATCATTAATGT+AGG 0.560101 6_4:+71959987 None:intergenic
TTGACTTGTCTCGCAAGAGA+AGG 0.564604 6_4:+71962197 None:intergenic
GGAATTTGATATAAATATTG+CGG 0.567112 6_4:-71963242 Msa0995570:CDS
GTACTTGGAATGTTATATGA+GGG 0.567173 6_4:-71960211 Msa0995570:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.568035 6_4:-71963001 Msa0995570:CDS
AATGGAGAAATAACTCTCAA+AGG 0.571243 6_4:-71963049 Msa0995570:CDS
TTGGCTACGACTTCTTACAT+TGG 0.575246 6_4:-71960641 Msa0995570:CDS
AAGCTTACATGAGTGAGGCC+AGG 0.576657 6_4:-71960739 Msa0995570:CDS
ATAGCACAGAAATAGAATGA+AGG 0.580450 6_4:+71963023 None:intergenic
GATGACACGTATGATGCATA+CGG 0.587584 6_4:-71961751 Msa0995570:CDS
TAAGAAGTCGTAGCCAACAC+CGG 0.589439 6_4:+71960647 None:intergenic
AAGAAGTCGTAGCCAACACC+GGG 0.590372 6_4:+71960648 None:intergenic
ACCAAAGATTCTGAAGCATA+CGG 0.593001 6_4:+71963764 None:intergenic
ATTGGGTTGCAATTGACTCA+AGG 0.594526 6_4:+71962225 None:intergenic
AACACATCAACAATATCAAG+TGG 0.595383 6_4:-71960674 Msa0995570:CDS
TCTTCATAAACATCCAAGAG+TGG 0.597368 6_4:+71961375 None:intergenic
GACAACTACACACATTCTGA+AGG 0.603730 6_4:-71960021 Msa0995570:CDS
TTTCCACCCTAGCGTTTGGG+GGG 0.604138 6_4:-71963798 Msa0995570:CDS
TAATGAAATTCTACTTACGT+TGG 0.604203 6_4:-71962087 Msa0995570:CDS
AACCAATTCAAGGACAAGCA+AGG 0.604565 6_4:-71962368 Msa0995570:CDS
CTTTATATATAGGTGGTGGA+AGG 0.614852 6_4:-71961917 Msa0995570:intron
ATATTGATCATAGATGTTGA+GGG 0.617274 6_4:-71962332 Msa0995570:CDS
ATTTCCACCCTAGCGTTTGG+GGG 0.619288 6_4:-71963799 Msa0995570:CDS
AAACCTCAATAAAACGCGAA+AGG 0.623927 6_4:+71960058 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 6_4:-71960133 Msa0995570:CDS
AATTGATAAACTAAAAGAGG+AGG 0.642973 6_4:-71963215 Msa0995570:CDS
ACCATGAATCATCATATGCG+AGG 0.651705 6_4:+71962289 None:intergenic
ATAGTTAACATTCAACCACC+TGG 0.654774 6_4:+71960721 None:intergenic
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6_4:-71960528 Msa0995570:intron
AGTCCAAGCTTACATGAGTG+AGG 0.665674 6_4:-71960744 Msa0995570:CDS
CTTACATGAGTGAGGCCAGG+TGG 0.678940 6_4:-71960736 Msa0995570:CDS
TAACTATATACCAACAACAG+AGG 0.706002 6_4:-71960705 Msa0995570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAATATATATATTACA+AGG + chr6_4:71960459-71960478 None:intergenic 10.0%
!!! ATTATATTTTTGATATCATT+AGG - chr6_4:71961243-71961262 Msa0995570:intron 10.0%
!!! ATTTAATTTTAAATTAAGGA+GGG + chr6_4:71961847-71961866 None:intergenic 10.0%
!!! AATTTAATTTTAAATTAAGG+AGG + chr6_4:71961848-71961867 None:intergenic 10.0%
!!! TTTTATCATATATTTATACA+CGG - chr6_4:71962320-71962339 Msa0995570:CDS 10.0%
!!! TTATAATGAAAATGAATTTT+AGG - chr6_4:71962377-71962396 Msa0995570:CDS 10.0%
!! TATTATATTAAATCTTAAGA+CGG + chr6_4:71963464-71963483 None:intergenic 10.0%
!! GAATCATTAATATAAATAAG+TGG + chr6_4:71960883-71960902 None:intergenic 15.0%
!!! TAATTTTTTAACTTTGATCA+TGG - chr6_4:71961019-71961038 Msa0995570:intron 15.0%
!!! AATTTTTTAACTTTGATCAT+GGG - chr6_4:71961020-71961039 Msa0995570:intron 15.0%
!!! TAATATAAACCTCTAAAAAA+TGG - chr6_4:71961050-71961069 Msa0995570:intron 15.0%
!! ATAAAGACCAAAAATATTAT+AGG + chr6_4:71961898-71961917 None:intergenic 15.0%
!!! TATTTTTGGTCTTTATATAT+AGG - chr6_4:71961902-71961921 Msa0995570:CDS 15.0%
!!! ATTAAATAATAACTTTTAGG+TGG - chr6_4:71962258-71962277 Msa0995570:CDS 15.0%
!!! TGTTATCAGAATAAAATTTT+AGG - chr6_4:71962629-71962648 Msa0995570:intron 15.0%
!! CATATTTACAAAAAATACAT+AGG - chr6_4:71962998-71963017 Msa0995570:CDS 15.0%
!! AATATAGTAGAATTGTTAAT+AGG + chr6_4:71963039-71963058 None:intergenic 15.0%
!! AATATAATAAGATGACATAA+TGG - chr6_4:71963475-71963494 Msa0995570:intron 15.0%
!! TTGTTCACGTAAAAAAAAAA+GGG + chr6_4:71960103-71960122 None:intergenic 20.0%
!! TATGTTATGAAAAGTGATTA+AGG - chr6_4:71960160-71960179 Msa0995570:CDS 20.0%
!!! ACACTTAATTGTTATTTGAA+AGG + chr6_4:71960519-71960538 None:intergenic 20.0%
!! GGAATTTGATATAAATATTG+CGG - chr6_4:71960587-71960606 Msa0995570:CDS 20.0%
!!! ATTTTTTAACTTTGATCATG+GGG - chr6_4:71961021-71961040 Msa0995570:intron 20.0%
!!! ATACTTAAACCATTTTTTAG+AGG + chr6_4:71961062-71961081 None:intergenic 20.0%
!!! TATTTAACTTTTTCTTGCAT+AGG - chr6_4:71961146-71961165 Msa0995570:intron 20.0%
!! AATTAAGATAATGTATAGTG+TGG + chr6_4:71961322-71961341 None:intergenic 20.0%
!!! CTAATTGCCTATAATATTTT+TGG - chr6_4:71961888-71961907 Msa0995570:CDS 20.0%
!!! GTTTTTCTATCTCTAAATTT+TGG + chr6_4:71962193-71962212 None:intergenic 20.0%
!!! TAATGAAAATGAATTTTAGG+TGG - chr6_4:71962380-71962399 Msa0995570:intron 20.0%
!!! AATGAAAATGAATTTTAGGT+GGG - chr6_4:71962381-71962400 Msa0995570:intron 20.0%
!!! TTGTGATTAGAACATTTTTA+GGG - chr6_4:71962705-71962724 Msa0995570:intron 20.0%
!!! TTTTGTTGAACTATTATCTA+CGG + chr6_4:71962958-71962977 None:intergenic 20.0%
!!! ATTGTTCATTTTTGTAAACA+AGG - chr6_4:71963391-71963410 Msa0995570:intron 20.0%
! GTTGTTCACGTAAAAAAAAA+AGG + chr6_4:71960104-71960123 None:intergenic 25.0%
! GAATAAAACCAAGAGAAAAT+AGG - chr6_4:71960220-71960239 Msa0995570:CDS 25.0%
! GCAATGTTAGTAATATTAAG+TGG + chr6_4:71960403-71960422 None:intergenic 25.0%
! TTCAAGAATGCCAATAATAT+AGG - chr6_4:71960474-71960493 Msa0995570:intron 25.0%
! GTCAAAAGATCCTATATTAT+TGG + chr6_4:71960487-71960506 None:intergenic 25.0%
! GCAAATTGATAAACTAAAAG+AGG - chr6_4:71960611-71960630 Msa0995570:CDS 25.0%
! AATTGATAAACTAAAAGAGG+AGG - chr6_4:71960614-71960633 Msa0995570:CDS 25.0%
!!! ATCAAGTTGACTTTTTTCAA+CGG + chr6_4:71960672-71960691 None:intergenic 25.0%
!! AGACGAAATTAATCAAGTTT+TGG - chr6_4:71960731-71960750 Msa0995570:CDS 25.0%
!!! ATTCTATTTCTGTGCTATTT+AGG - chr6_4:71960811-71960830 Msa0995570:intron 25.0%
!!! TTCTATTTCTGTGCTATTTA+GGG - chr6_4:71960812-71960831 Msa0995570:intron 25.0%
! CGTTGTTACTAAAAATGTAA+AGG + chr6_4:71961088-71961107 None:intergenic 25.0%
!!! TATTTTTGATATCATTAGGC+CGG - chr6_4:71961247-71961266 Msa0995570:intron 25.0%
! AATATTGATCATAGATGTTG+AGG - chr6_4:71961496-71961515 Msa0995570:intron 25.0%
! ATATTGATCATAGATGTTGA+GGG - chr6_4:71961497-71961516 Msa0995570:intron 25.0%
! CGTAAGTAGAATTTCATTAT+GGG + chr6_4:71961741-71961760 None:intergenic 25.0%
! ACGTAAGTAGAATTTCATTA+TGG + chr6_4:71961742-71961761 None:intergenic 25.0%
! TAATGAAATTCTACTTACGT+TGG - chr6_4:71961742-71961761 Msa0995570:CDS 25.0%
!!! TTTTGGTCTTTATATATAGG+TGG - chr6_4:71961905-71961924 Msa0995570:CDS 25.0%
! GTCATCAATGTATGATAAAA+TGG + chr6_4:71962064-71962083 None:intergenic 25.0%
!! TGAGTTAGAACTTTTTACTA+AGG - chr6_4:71962110-71962129 Msa0995570:CDS 25.0%
!! TTTTTACTAAGGCAATTGAA+AGG - chr6_4:71962121-71962140 Msa0995570:CDS 25.0%
!!! TTCTTTTAAGAAGTGGTTAA+TGG + chr6_4:71962518-71962537 None:intergenic 25.0%
! GATCTATGTATGTATCTATA+CGG + chr6_4:71962675-71962694 None:intergenic 25.0%
!! CTTGTGATTAGAACATTTTT+AGG - chr6_4:71962704-71962723 Msa0995570:intron 25.0%
!!! TGTGATTAGAACATTTTTAG+GGG - chr6_4:71962706-71962725 Msa0995570:intron 25.0%
! CACAAATGATATCTTCAATT+GGG - chr6_4:71963226-71963245 Msa0995570:CDS 25.0%
! ATTTCACACAATATTCTTTG+TGG - chr6_4:71963348-71963367 Msa0995570:intron 25.0%
! TTATATGAGGGAATATGATA+TGG - chr6_4:71963630-71963649 Msa0995570:intron 25.0%
!!! AAGCATTGTCAATTTTCTTT+TGG + chr6_4:71963681-71963700 None:intergenic 25.0%
! AAAAGAAAATTGACAATGCT+TGG - chr6_4:71963680-71963699 Msa0995570:intron 25.0%
! ATATAAATGAGGAATGTCTT+AGG - chr6_4:71963707-71963726 Msa0995570:intron 25.0%
! GTTGGTTATTTGTTAGCAAT+AGG - chr6_4:71960269-71960288 Msa0995570:intron 30.0%
! TAGGATTTCCAACATTTTTG+AGG - chr6_4:71960309-71960328 Msa0995570:intron 30.0%
! AGGATTTCCAACATTTTTGA+GGG - chr6_4:71960310-71960329 Msa0995570:intron 30.0%
GCAATGTGTAATATCTATGT+TGG + chr6_4:71960346-71960365 None:intergenic 30.0%
TTAATTATACGATCCAAGTG+TGG + chr6_4:71960376-71960395 None:intergenic 30.0%
!!! TGCATGTTTTGATTACATAC+AGG - chr6_4:71960566-71960585 Msa0995570:CDS 30.0%
! ATTGACTCAATATGTCGTTT+GGG - chr6_4:71960690-71960709 Msa0995570:CDS 30.0%
! CATTTTGAACAAAATCCTTG+TGG + chr6_4:71960764-71960783 None:intergenic 30.0%
! CACAAGGATTTTGTTCAAAA+TGG - chr6_4:71960762-71960781 Msa0995570:intron 30.0%
AATGGAGAAATAACTCTCAA+AGG - chr6_4:71960780-71960799 Msa0995570:intron 30.0%
ATAGCACAGAAATAGAATGA+AGG + chr6_4:71960809-71960828 None:intergenic 30.0%
TAAGTGGAGATATAAATACC+AGG + chr6_4:71960867-71960886 None:intergenic 30.0%
TTGAGTAAAACAAACTTGTG+TGG - chr6_4:71960931-71960950 Msa0995570:intron 30.0%
!! AACTTTTTCTTGCATAGGAT+CGG - chr6_4:71961151-71961170 Msa0995570:intron 30.0%
!! GGATAATGGGTTGTTTAATA+TGG + chr6_4:71961179-71961198 None:intergenic 30.0%
GATAACATTACACGGATAAT+GGG + chr6_4:71961192-71961211 None:intergenic 30.0%
AAGGTTCTTCCTTAATAAGA+TGG + chr6_4:71961284-71961303 None:intergenic 30.0%
AGATGTATTCAACCAATTCA+AGG - chr6_4:71961451-71961470 Msa0995570:intron 30.0%
GATTCATGGTGAGAAAAATT+TGG - chr6_4:71961553-71961572 Msa0995570:intron 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6_4:71961796-71961815 None:intergenic 30.0%
! ATTTTAAATTAAGGAGGGTG+TGG + chr6_4:71961842-71961861 None:intergenic 30.0%
CTAAAAAACTACCTTATGCA+CGG - chr6_4:71961947-71961966 Msa0995570:intron 30.0%
TAAAAAACTACCTTATGCAC+GGG - chr6_4:71961948-71961967 Msa0995570:intron 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6_4:71961975-71961994 Msa0995570:intron 30.0%
TAGAGAAACTTCATGTAATC+CGG + chr6_4:71962430-71962449 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+TGG + chr6_4:71962525-71962544 None:intergenic 30.0%
! TTCTAATCACAAGATTTGCT+AGG + chr6_4:71962697-71962716 None:intergenic 30.0%
CAAAAAATACATAGGAGTTC+AGG - chr6_4:71963006-71963025 Msa0995570:CDS 30.0%
TAACTATATACCAACAACAG+AGG - chr6_4:71963124-71963143 Msa0995570:CDS 30.0%
AACACATCAACAATATCAAG+TGG - chr6_4:71963155-71963174 Msa0995570:CDS 30.0%
CCAATTGAAGATATCATTTG+TGG + chr6_4:71963228-71963247 None:intergenic 30.0%
CCACAAATGATATCTTCAAT+TGG - chr6_4:71963225-71963244 Msa0995570:CDS 30.0%
GTACTTGGAATGTTATATGA+GGG - chr6_4:71963618-71963637 Msa0995570:intron 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG + chr6_4:71963668-71963687 None:intergenic 30.0%
TGCTTGGAAAGATATAAATG+AGG - chr6_4:71963696-71963715 Msa0995570:intron 30.0%
! AAACGTAATGGAACTTTAGT+TGG + chr6_4:71963733-71963752 None:intergenic 30.0%
GACAAGCAAATCATTAATGT+AGG + chr6_4:71963845-71963864 None:intergenic 30.0%
!! ACCAAAGATTCTGAAGCATA+CGG + chr6_4:71960068-71960087 None:intergenic 35.0%
!! TAGCTCTACCTATTTTCTCT+TGG + chr6_4:71960231-71960250 None:intergenic 35.0%
CTAACAAATAACCAACCCTT+TGG + chr6_4:71960265-71960284 None:intergenic 35.0%
TTAGCAATAGGAATGAAACC+TGG - chr6_4:71960281-71960300 Msa0995570:intron 35.0%
!! TCCAACATTTTTGAGGGAAA+AGG - chr6_4:71960316-71960335 Msa0995570:intron 35.0%
! TCCTTTTCCCTCAAAAATGT+TGG + chr6_4:71960320-71960339 None:intergenic 35.0%
! GATTGACTCAATATGTCGTT+TGG - chr6_4:71960689-71960708 Msa0995570:CDS 35.0%
!!! AGTTTTGGAAGATATCCACA+AGG - chr6_4:71960746-71960765 Msa0995570:CDS 35.0%
GGATAACATTACACGGATAA+TGG + chr6_4:71961193-71961212 None:intergenic 35.0%
TATCCGTGTAATGTTATCCT+CGG - chr6_4:71961194-71961213 Msa0995570:intron 35.0%
ATATCATTAGGCCGGTTATA+GGG - chr6_4:71961255-71961274 Msa0995570:intron 35.0%
ATAGGGTAGCCATCTTATTA+AGG - chr6_4:71961272-71961291 Msa0995570:intron 35.0%
!! GTGGTTCTAGAGTATGAAAA+AGG + chr6_4:71961303-71961322 None:intergenic 35.0%
ATGATTGTTCAACATTGTCG+TGG - chr6_4:71961410-71961429 Msa0995570:CDS 35.0%
TGGTGAGAAAAATTTGGAAG+AGG - chr6_4:71961559-71961578 Msa0995570:intron 35.0%
! GAAAAATTTGGAAGAGGCAT+TGG - chr6_4:71961565-71961584 Msa0995570:intron 35.0%
TCTACTTACGTTGGCAAAAT+TGG - chr6_4:71961751-71961770 Msa0995570:CDS 35.0%
! ATTCCTTTTGATGTAGGCTT+TGG + chr6_4:71961790-71961809 None:intergenic 35.0%
AGCCTACATCAAAAGGAATT+TGG - chr6_4:71961791-71961810 Msa0995570:CDS 35.0%
TGGTCTTTATATATAGGTGG+TGG - chr6_4:71961908-71961927 Msa0995570:CDS 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6_4:71961912-71961931 Msa0995570:intron 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6_4:71961974-71961993 Msa0995570:intron 35.0%
!!! ATGTTGCTTTTGGGTTATGA+CGG - chr6_4:71961984-71962003 Msa0995570:intron 35.0%
TTCCTTGCTTGACAATATTG+AGG + chr6_4:71962021-71962040 None:intergenic 35.0%
TTGTCAAGCAAGGAAAATGA+TGG - chr6_4:71962026-71962045 Msa0995570:CDS 35.0%
TAGGTGGGATATTAGTTGTT+TGG - chr6_4:71962396-71962415 Msa0995570:intron 35.0%
TAGTTGTTTGGATGATCTTC+CGG - chr6_4:71962408-71962427 Msa0995570:intron 35.0%
GTTTCTCTATAAACCACTCT+TGG - chr6_4:71962441-71962460 Msa0995570:intron 35.0%
TCTTCATAAACATCCAAGAG+TGG + chr6_4:71962457-71962476 None:intergenic 35.0%
ATAGTTAACATTCAACCACC+TGG + chr6_4:71963111-71963130 None:intergenic 35.0%
AACAATATCAAGTGGTTACC+CGG - chr6_4:71963163-71963182 Msa0995570:CDS 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_4:71963193-71963212 Msa0995570:CDS 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_4:71963194-71963213 Msa0995570:CDS 35.0%
! GCAGCAGCATTAACAATTTT+CGG + chr6_4:71963263-71963282 None:intergenic 35.0%
AAACAGTTCGAGCAAAAAAG+AGG - chr6_4:71963583-71963602 Msa0995570:intron 35.0%
CGTACTTGGAATGTTATATG+AGG - chr6_4:71963617-71963636 Msa0995570:intron 35.0%
ACACACGTCAAAAAACGTAA+TGG + chr6_4:71963745-71963764 None:intergenic 35.0%
AAACCTCAATAAAACGCGAA+AGG + chr6_4:71963774-71963793 None:intergenic 35.0%
TCCGTATGCTTCAGAATCTT+TGG - chr6_4:71960064-71960083 Msa0995570:CDS 40.0%
AGCTATAGCAAACACTCCAA+AGG - chr6_4:71960246-71960265 Msa0995570:intron 40.0%
GCTATAGCAAACACTCCAAA+GGG - chr6_4:71960247-71960266 Msa0995570:intron 40.0%
! GGAATGAAACCTGGTGTTTT+AGG - chr6_4:71960290-71960309 Msa0995570:intron 40.0%
GTTGGAAATCCTAAAACACC+AGG + chr6_4:71960302-71960321 None:intergenic 40.0%
TTATACGATCCAAGTGTGGT+TGG + chr6_4:71960372-71960391 None:intergenic 40.0%
ACTAACATTGCACACTCCAA+AGG - chr6_4:71960412-71960431 Msa0995570:intron 40.0%
CTAACATTGCACACTCCAAA+GGG - chr6_4:71960413-71960432 Msa0995570:intron 40.0%
GTGAGTAACTTGAATCCCTT+TGG + chr6_4:71960431-71960450 None:intergenic 40.0%
GAACCGAGGATAACATTACA+CGG + chr6_4:71961200-71961219 None:intergenic 40.0%
GCGAATAATGTAAAGAACCG+AGG + chr6_4:71961214-71961233 None:intergenic 40.0%
GATATCATTAGGCCGGTTAT+AGG - chr6_4:71961254-71961273 Msa0995570:intron 40.0%
TAAGATGGCTACCCTATAAC+CGG + chr6_4:71961269-71961288 None:intergenic 40.0%
AACCAATTCAAGGACAAGCA+AGG - chr6_4:71961461-71961480 Msa0995570:intron 40.0%
TTCCTTGCTTGTCCTTGAAT+TGG + chr6_4:71961466-71961485 None:intergenic 40.0%
ACCATGAATCATCATATGCG+AGG + chr6_4:71961543-71961562 None:intergenic 40.0%
! ATTGGGTTGCAATTGACTCA+AGG + chr6_4:71961607-71961626 None:intergenic 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6_4:71961720-71961739 None:intergenic 40.0%
AGCCTCAATATTGTCAAGCA+AGG - chr6_4:71962016-71962035 Msa0995570:intron 40.0%
GATGACACGTATGATGCATA+CGG - chr6_4:71962078-71962097 Msa0995570:CDS 40.0%
GAGCAAGAAGTGAAGAAAGA+AGG - chr6_4:71962481-71962500 Msa0995570:intron 40.0%
GTATGTATCTATACGGAGAG+TGG + chr6_4:71962668-71962687 None:intergenic 40.0%
TTCATGTACTCCTCTGTTGT+TGG + chr6_4:71963137-71963156 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_4:71963188-71963207 Msa0995570:CDS 40.0%
!! CAACCTTTCGCGTTTTATTG+AGG - chr6_4:71963768-71963787 Msa0995570:CDS 40.0%
GACAACTACACACATTCTGA+AGG - chr6_4:71963808-71963827 Msa0995570:CDS 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6_4:71960028-71960047 Msa0995570:CDS 45.0%
TAGCAAACACTCCAAAGGGT+TGG - chr6_4:71960251-71960270 Msa0995570:intron 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6_4:71960820-71960839 Msa0995570:intron 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6_4:71960828-71960847 Msa0995570:intron 45.0%
CATGGTCTTTACGTTTCACC+TGG - chr6_4:71960846-71960865 Msa0995570:intron 45.0%
GCCTCGCATATGATGATTCA+TGG - chr6_4:71961539-71961558 Msa0995570:intron 45.0%
!!! GAGGCATTGGCTTTTACTTC+TGG - chr6_4:71961578-71961597 Msa0995570:intron 45.0%
CGCAAGAGAAGGACTCAATT+GGG + chr6_4:71961624-71961643 None:intergenic 45.0%
TCGCAAGAGAAGGACTCAAT+TGG + chr6_4:71961625-71961644 None:intergenic 45.0%
!! TTGACTTGTCTCGCAAGAGA+AGG + chr6_4:71961635-71961654 None:intergenic 45.0%
CTTGCGAGACAAGTCAAACA+TGG - chr6_4:71961638-71961657 Msa0995570:intron 45.0%
CAAAAACTTGCCTAGGCTAG+AGG - chr6_4:71961679-71961698 Msa0995570:intron 45.0%
GCTCCAAAGCCTACATCAAA+AGG - chr6_4:71961784-71961803 Msa0995570:CDS 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6_4:71961918-71961937 Msa0995570:intron 45.0%
AGTCCAAGCTTACATGAGTG+AGG - chr6_4:71963085-71963104 Msa0995570:CDS 45.0%
TAAGAAGTCGTAGCCAACAC+CGG + chr6_4:71963185-71963204 None:intergenic 45.0%
TGCTGTTCATTGCAGGCTTA+GGG - chr6_4:71963280-71963299 Msa0995570:intron 45.0%
GGATGAAATTGTGTCTAGCG+AGG - chr6_4:71963301-71963320 Msa0995570:intron 45.0%
! AGGACATGTTGCTTCGTACT+TGG - chr6_4:71963603-71963622 Msa0995570:intron 45.0%
!!! TCATTTTTTATATTTTAATT+TGG - chr6_4:71960901-71960920 Msa0995570:intron 5.0%
!!! TTCAATTTAATTTTAAATTA+AGG + chr6_4:71961851-71961870 None:intergenic 5.0%
!!! AAAATTAAATAATAACTTTT+AGG - chr6_4:71962255-71962274 Msa0995570:CDS 5.0%
!! ATTTAAAAAAGATTATATAT+TGG - chr6_4:71962920-71962939 Msa0995570:intron 5.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6_4:71960027-71960046 Msa0995570:CDS 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6_4:71960029-71960048 Msa0995570:CDS 50.0%
ATTTCCACCCTAGCGTTTGG+GGG - chr6_4:71960030-71960049 Msa0995570:CDS 50.0%
CATTGCACACCAACCACACT+TGG - chr6_4:71960360-71960379 Msa0995570:intron 50.0%
! CTAGGCAAGTTTTTGCGCAG+AGG + chr6_4:71961674-71961693 None:intergenic 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6_4:71961672-71961691 Msa0995570:intron 50.0%
TAGCTTCTTGCCTCTAGCCT+AGG + chr6_4:71961692-71961711 None:intergenic 50.0%
ACTACTCTGTCCCGTGCATA+AGG + chr6_4:71961961-71961980 None:intergenic 50.0%
TGGCCTCACTCATGTAAGCT+TGG + chr6_4:71963091-71963110 None:intergenic 50.0%
AAGCTTACATGAGTGAGGCC+AGG - chr6_4:71963090-71963109 Msa0995570:CDS 50.0%
ATCAAGTGGTTACCCGGTGT+TGG - chr6_4:71963169-71963188 Msa0995570:CDS 50.0%
AAGAAGTCGTAGCCAACACC+GGG + chr6_4:71963184-71963203 None:intergenic 50.0%
ATGCTGCTGCTGTTCATTGC+AGG - chr6_4:71963273-71963292 Msa0995570:intron 50.0%
CTGCTGTTCATTGCAGGCTT+AGG - chr6_4:71963279-71963298 Msa0995570:intron 50.0%
TTTCCACCCTAGCGTTTGGG+GGG - chr6_4:71960031-71960050 Msa0995570:CDS 55.0%
AGAAGTCCCCCCAAACGCTA+GGG + chr6_4:71960040-71960059 None:intergenic 55.0%
AAGAAGTCCCCCCAAACGCT+AGG + chr6_4:71960041-71960060 None:intergenic 55.0%
CTTACATGAGTGAGGCCAGG+TGG - chr6_4:71963093-71963112 Msa0995570:CDS 55.0%
AGTCCCCCCAAACGCTAGGG+TGG + chr6_4:71960037-71960056 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 71959969 71963882 71959969 ID=Msa0995570;Name=Msa0995570
chr6_4 mRNA 71959969 71963882 71959969 ID=Msa0995570-mRNA-1;Parent=Msa0995570;Name=Msa0995570-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|7|0|556
chr6_4 exon 71963766 71963882 71963766 ID=Msa0995570-mRNA-1:exon:13434;Parent=Msa0995570-mRNA-1
chr6_4 exon 71962984 71963263 71962984 ID=Msa0995570-mRNA-1:exon:13433;Parent=Msa0995570-mRNA-1
chr6_4 exon 71962026 71962398 71962026 ID=Msa0995570-mRNA-1:exon:13432;Parent=Msa0995570-mRNA-1
chr6_4 exon 71961709 71961927 71961709 ID=Msa0995570-mRNA-1:exon:13431;Parent=Msa0995570-mRNA-1
chr6_4 exon 71961314 71961452 71961314 ID=Msa0995570-mRNA-1:exon:13430;Parent=Msa0995570-mRNA-1
chr6_4 exon 71960529 71960777 71960529 ID=Msa0995570-mRNA-1:exon:13429;Parent=Msa0995570-mRNA-1
chr6_4 exon 71959969 71960262 71959969 ID=Msa0995570-mRNA-1:exon:13428;Parent=Msa0995570-mRNA-1
chr6_4 CDS 71963766 71963882 71963766 ID=Msa0995570-mRNA-1:cds;Parent=Msa0995570-mRNA-1
chr6_4 CDS 71962984 71963263 71962984 ID=Msa0995570-mRNA-1:cds;Parent=Msa0995570-mRNA-1
chr6_4 CDS 71962026 71962398 71962026 ID=Msa0995570-mRNA-1:cds;Parent=Msa0995570-mRNA-1
chr6_4 CDS 71961709 71961927 71961709 ID=Msa0995570-mRNA-1:cds;Parent=Msa0995570-mRNA-1
chr6_4 CDS 71961314 71961452 71961314 ID=Msa0995570-mRNA-1:cds;Parent=Msa0995570-mRNA-1
chr6_4 CDS 71960529 71960777 71960529 ID=Msa0995570-mRNA-1:cds;Parent=Msa0995570-mRNA-1
chr6_4 CDS 71959969 71960262 71959969 ID=Msa0995570-mRNA-1:cds;Parent=Msa0995570-mRNA-1
Gene Sequence

>Msa0995570

ATGTCTGCAGTAGCTAGCTTCAATCATAACGAGAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGAATTTGATATAAATATTGCGGCGCAAATTGATAAACTAAAAGAGGAGGTTAGACAAATGCTTGTCTCAAAAATTGAGAATCCGTTGAAAAAAGTCAACTTGATTGACTCAATATGTCGTTTGGGTGTGAGCTATTATTTTGAAGACGAAATTAATCAAGTTTTGGAAGATATCCACAAGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGCAACCTTCATTCTATTTCTGTGCTATTTAGGGTGTTGAGGCAACATGGTCTTTACGTTTCACCTGATGTATTCAACCAATTCAAGGACAAGCAAGGAAATTTTAGTGAAATATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCGCATATGATGATTCATGGTGAGAAAAATTTGGAAGAGGCATTGGCTTTTACTTCTGGTCACCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGAGACAAGTCAAACATGGCTTAAGACATCCTCTGCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAGGAATTTGGAAACATTTGCAAGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAATGATGGCAAAAGTAATCTCCATTTTATCATACATTGATGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGCAATTGAAAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATTGAGCAAGAAGTGAAGAAAGAAGGAAGAGTATATGCCATTAACCACTTCTTAAAAGAATTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAACTATATACCAACAACAGAGGAGTACATGAACACATCAACAATATCAAGTGGTTACCCGGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCCACAAATGATATCTTCAATTGGGTAACTAGTCATCCGAAAATTGTTAATGCTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCGAGTTCGAGCAAAAAAGAGGACATGTTGCTTCGTACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTACGTTTTTTGACGTGTGTTCTCAACCTTTCGCGTTTTATTGAGGTTTTTTACAAAGATGAAGACAACTACACACATTCTGAAGGACTAATGAAGACCTACATTAATGATTTGCTTGTCAATCCCATCCCAACATGA
Protein sequence

>Msa0995570

MSAVASFNHNEKSVLQRNVADFHPSVWGDFFIPYASESLEFDINIAAQIDKLKEEVRQMLVSKIENPLKKVNLIDSICRLGVSYYFEDEINQVLEDIHKDFVQNGEITLKGNLHSISVLFRVLRQHGLYVSPDVFNQFKDKQGNFSEILIIDVEGMLNLYEASHMMIHGEKNLEEALAFTSGHLESIATQLSPSLARQVKHGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQSLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKMMAKVISILSYIDDTYDAYGTIDELELFTKAIERWDISCLDDLPDYMKFLYKPLLDVYEEIEQEVKKEGRVYAINHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPVLATTSYIGMGNIATNDIFNWVTSHPKIVNAAAVHCRLRDEIVSSEFEQKRGHVASYLECYMREYDMDREAAIQECQKKIDNAWKDINEECLRPTKVPLRFLTCVLNLSRFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT*