AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0894030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0894030 MtrunA17_Chr6g0465441 68.306 549 174 0 1 549 4 552 0.0 807
Msa0894030 MtrunA17_Chr7g0236991 67.577 549 178 0 1 549 4 552 0.0 803
Msa0894030 MtrunA17_Chr7g0237001 67.395 549 179 0 1 549 4 552 0.0 801
Msa0894030 MtrunA17_Chr7g0237041 67.395 549 179 0 1 549 4 552 0.0 801
Msa0894030 MtrunA17_Chr7g0237081 67.395 549 179 0 1 549 4 552 0.0 801
Msa0894030 MtrunA17_Chr7g0237051 67.395 549 179 0 1 549 4 552 0.0 801
Msa0894030 MtrunA17_Chr5g0425371 69.815 540 163 0 10 549 13 552 0.0 797
Msa0894030 MtrunA17_Chr6g0465911 67.760 549 177 0 1 549 4 552 0.0 793
Msa0894030 MtrunA17_Chr6g0466051 67.577 549 178 0 1 549 4 552 0.0 791
Msa0894030 MtrunA17_Chr4g0024691 68.681 546 171 0 4 549 15 560 0.0 789
Msa0894030 MtrunA17_Chr6g0451711 67.031 549 180 1 2 549 8 556 0.0 786
Msa0894030 MtrunA17_Chr3g0105071 66.302 549 184 1 1 548 7 555 0.0 771
Msa0894030 MtrunA17_Chr6g0465851 68.665 517 162 0 33 549 1 517 0.0 751
Msa0894030 MtrunA17_Chr3g0082691 64.855 552 191 2 1 549 1 552 0.0 751
Msa0894030 MtrunA17_Chr7g0236961 69.014 497 154 0 53 549 1 497 0.0 739
Msa0894030 MtrunA17_Chr5g0431651 63.884 551 197 2 1 549 1 551 0.0 739
Msa0894030 MtrunA17_Chr7g0237011 69.014 497 154 0 53 549 1 497 0.0 738
Msa0894030 MtrunA17_Chr5g0431571 65.441 544 187 1 6 548 4 547 0.0 737
Msa0894030 MtrunA17_Chr4g0042111 58.029 548 227 2 4 549 15 561 0.0 664
Msa0894030 MtrunA17_Chr7g0236971 68.750 400 125 0 150 549 1 400 0.0 598
Msa0894030 MtrunA17_Chr6g0465981 68.378 370 117 0 1 370 4 373 0.0 543
Msa0894030 MtrunA17_Chr6g0465871 68.378 370 117 0 1 370 4 373 0.0 543
Msa0894030 MtrunA17_Chr6g0466081 68.378 370 117 0 1 370 4 373 0.0 543
Msa0894030 MtrunA17_Chr6g0466111 69.822 338 102 0 33 370 1 338 3.90e-176 500
Msa0894030 MtrunA17_Chr6g0465931 69.527 338 103 0 33 370 1 338 2.21e-175 498
Msa0894030 MtrunA17_Chr2g0319041 45.055 546 292 7 9 548 12 555 2.25e-171 496
Msa0894030 MtrunA17_Chr7g0236951 70.159 315 94 0 53 367 1 315 2.92e-168 479
Msa0894030 MtrunA17_Chr8g0336181 45.438 548 291 6 7 548 9 554 3.45e-168 488
Msa0894030 MtrunA17_Chr7g0237031 70.159 315 94 0 53 367 1 315 9.47e-168 478
Msa0894030 MtrunA17_Chr2g0319051 44.814 511 276 6 42 548 4 512 2.15e-160 467
Msa0894030 MtrunA17_Chr4g0008621 45.250 400 215 4 9 404 19 418 3.49e-122 366
Msa0894030 MtrunA17_Chr6g0466031 65.251 259 90 0 291 549 1 259 1.68e-120 355
Msa0894030 MtrunA17_Chr5g0445511 66.527 239 80 0 145 383 1 239 3.74e-117 346
Msa0894030 MtrunA17_Chr2g0319071 37.331 517 274 10 38 550 19 489 3.59e-112 342
Msa0894030 MtrunA17_Chr4g0023911 34.432 546 347 4 7 548 41 579 3.68e-112 345
Msa0894030 MtrunA17_Chr7g0237061 60.618 259 79 2 291 549 1 236 7.58e-107 320
Msa0894030 MtrunA17_Chr2g0323131 35.135 518 313 9 40 550 64 565 2.39e-105 327
Msa0894030 MtrunA17_Chr2g0310331 34.935 541 342 6 11 549 53 585 6.39e-105 327
Msa0894030 MtrunA17_Chr2g0323151 34.969 489 301 5 65 549 4 479 3.45e-101 314
Msa0894030 MtrunA17_Chr8g0357411 33.031 551 360 5 1 549 45 588 3.13e-95 301
Msa0894030 MtrunA17_Chr7g0237071 68.812 202 63 0 53 254 1 202 2.93e-94 287
Msa0894030 MtrunA17_Chr6g0466021 65.657 198 68 0 1 198 4 201 8.78e-91 277
Msa0894030 MtrunA17_Chr4g0048921 32.233 515 336 6 38 548 64 569 9.32e-85 274
Msa0894030 MtrunA17_Chr7g0237021 67.836 171 55 0 379 549 1 171 3.50e-82 254
Msa0894030 MtrunA17_Chr7g0236941 67.836 171 55 0 379 549 1 171 3.50e-82 254
Msa0894030 MtrunA17_Chr4g0048911 30.037 546 370 9 2 542 18 556 9.04e-82 266
Msa0894030 MtrunA17_Chr6g0465941 66.082 171 58 0 379 549 1 171 8.31e-78 242
Msa0894030 MtrunA17_Chr6g0466121 66.082 171 58 0 379 549 1 171 8.31e-78 242
Msa0894030 MtrunA17_Chr6g0465991 66.082 171 58 0 379 549 1 171 8.31e-78 242
Msa0894030 MtrunA17_Chr6g0466091 66.082 171 58 0 379 549 1 171 8.31e-78 242
Msa0894030 MtrunA17_Chr6g0465881 65.497 171 59 0 379 549 1 171 4.77e-77 240
Msa0894030 MtrunA17_Chr2g0280581 29.905 525 341 9 36 541 2 518 1.99e-76 250
Msa0894030 MtrunA17_Chr2g0319081 39.506 324 177 7 228 548 118 425 1.67e-73 240
Msa0894030 MtrunA17_Chr2g0319081 40.164 122 72 1 9 129 19 140 1.64e-22 100
Msa0894030 MtrunA17_Chr5g0445501 61.988 171 65 0 379 549 1 171 1.57e-72 229
Msa0894030 MtrunA17_Chr2g0310401 32.477 428 286 2 124 549 5 431 9.16e-72 236
Msa0894030 MtrunA17_Chr3g0109001 29.659 499 324 9 46 528 12 499 9.36e-69 230
Msa0894030 MtrunA17_Chr3g0108941 29.167 504 330 9 57 544 21 513 2.45e-68 229
Msa0894030 MtrunA17_Chr7g0236921 63.694 157 53 1 397 549 1 157 7.37e-68 216
Msa0894030 MtrunA17_Chr3g0109021 29.331 508 333 9 36 528 2 498 1.18e-67 227
Msa0894030 MtrunA17_Chr3g0109031 28.685 502 344 8 36 528 2 498 6.50e-67 225
Msa0894030 MtrunA17_Chr6g0477111 29.938 481 313 8 67 532 6 477 8.54e-67 224
Msa0894030 MtrunA17_Chr3g0105691 28.932 515 351 8 24 528 22 531 4.49e-66 224
Msa0894030 MtrunA17_Chr3g0108981 29.350 477 314 6 67 528 6 474 1.11e-64 219
Msa0894030 MtrunA17_Chr3g0108961 29.350 477 314 6 67 528 6 474 1.11e-64 219
Msa0894030 MtrunA17_Chr3g0108991 28.543 508 337 9 36 528 2 498 2.11e-64 219
Msa0894030 MtrunA17_Chr3g0108951 28.543 508 337 9 36 528 2 498 2.11e-64 219
Msa0894030 MtrunA17_Chr7g0236931 62.092 153 55 1 397 549 1 150 1.27e-63 205
Msa0894030 MtrunA17_Chr3g0108971 29.140 477 314 8 67 528 6 473 1.32e-62 213
Msa0894030 MtrunA17_Chr3g0109011 28.931 477 315 8 67 528 6 473 1.63e-62 213
Msa0894030 MtrunA17_Chr3g0099031 28.963 511 339 10 47 544 13 512 3.01e-62 213
Msa0894030 MtrunA17_Chr6g0477121 28.780 410 281 6 127 528 10 416 2.63e-54 189
Msa0894030 MtrunA17_Chr7g0233861 62.222 135 42 1 190 324 33 158 2.86e-51 173
Msa0894030 MtrunA17_Chr7g0236981 58.915 129 53 0 1 129 4 132 1.11e-50 171
Msa0894030 MtrunA17_Chr7g0217361 33.000 300 200 1 249 547 8 307 4.30e-48 169
Msa0894030 MtrunA17_Chr8g0357221 37.143 245 145 4 3 245 47 284 3.87e-43 155
Msa0894030 MtrunA17_Chr5g0445401 71.579 95 23 2 160 251 1 94 4.53e-35 127
Msa0894030 MtrunA17_Chr3g0101681 25.813 523 332 17 64 548 276 780 1.97e-32 132
Msa0894030 MtrunA17_Chr2g0310121 24.225 516 349 15 64 548 275 779 4.12e-32 131
Msa0894030 MtrunA17_Chr8g0357231 28.958 259 182 2 292 549 1 258 4.89e-32 124
Msa0894030 MtrunA17_Chr5g0445521 63.855 83 30 0 6 88 12 94 7.90e-32 118
Msa0894030 MtrunA17_Chr3g0082711 47.826 115 43 1 435 549 1 98 2.63e-30 114
Msa0894030 MtrunA17_Chr7g0259881 29.368 269 160 7 67 307 232 498 3.09e-26 113
Msa0894030 MtrunA17_Chr7g0218001 31.111 270 152 7 67 304 349 616 1.12e-24 108
Msa0894030 MtrunA17_Chr7g0217351 29.493 217 144 5 40 252 62 273 2.18e-21 94.7
Msa0894030 MtrunA17_Chr2g0281651 24.771 327 234 8 227 548 43 362 1.56e-18 88.2
Msa0894030 MtrunA17_Chr7g0218041 31.667 240 137 7 114 328 3 240 5.34e-17 83.6
Msa0894030 MtrunA17_Chr5g0411111 38.889 126 62 5 114 228 3 124 6.29e-14 68.9
Msa0894030 MtrunA17_Chr2g0310411 31.200 125 76 4 2 125 49 164 3.80e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0894030 AT5G23960.2 39.194 546 325 5 7 549 3 544 1.93e-146 432
Msa0894030 AT5G23960.1 39.234 548 324 6 7 549 3 546 1.87e-145 430
Msa0894030 AT1G70080.1 37.179 546 333 7 11 548 66 609 9.87e-123 374
Msa0894030 AT1G31950.1 35.926 540 336 5 16 549 70 605 3.21e-119 365
Msa0894030 AT1G31950.3 35.860 541 336 6 16 549 70 606 9.97e-119 363
Msa0894030 AT3G14520.1 35.926 540 336 6 16 549 68 603 1.44e-118 363
Msa0894030 AT3G14490.1 36.996 546 332 7 11 549 60 600 3.56e-118 362
Msa0894030 AT3G14540.1 36.178 539 336 4 16 549 65 600 1.49e-116 358
Msa0894030 AT5G44630.1 35.413 545 341 6 12 548 14 555 1.94e-111 343
Msa0894030 AT1G33750.1 34.270 534 345 4 18 549 73 602 3.66e-111 344
Msa0894030 AT3G32030.1 33.889 540 349 6 16 550 68 604 1.01e-108 337
Msa0894030 AT4G13300.1 36.127 537 332 7 19 548 20 552 1.45e-108 335
Msa0894030 AT3G29410.1 33.886 543 351 6 11 549 64 602 1.84e-108 337
Msa0894030 AT4G20210.1 33.883 546 348 7 11 548 58 598 6.51e-107 333
Msa0894030 AT3G29190.1 34.019 535 327 9 32 549 75 600 2.21e-105 329
Msa0894030 AT4G20200.1 35.328 518 317 9 42 548 92 602 2.30e-105 329
Msa0894030 AT4G15870.1 33.935 554 340 9 3 548 61 596 2.38e-104 326
Msa0894030 AT3G29410.2 34.200 500 323 4 53 549 1 497 5.35e-103 319
Msa0894030 AT4G13280.2 35.327 535 335 7 21 548 22 552 2.31e-102 320
Msa0894030 AT1G31950.2 36.105 457 281 6 16 465 70 522 3.02e-100 313
Msa0894030 AT3G14540.2 36.771 446 275 3 16 457 65 507 1.19e-98 308
Msa0894030 AT4G20230.1 32.902 541 341 9 19 546 70 601 5.33e-97 307
Msa0894030 AT4G20230.2 32.902 541 341 9 19 546 82 613 7.89e-97 307
Msa0894030 AT4G16730.1 31.481 540 355 5 22 549 2 538 1.54e-96 304
Msa0894030 AT3G29110.1 34.186 547 345 11 11 548 55 595 9.29e-96 303
Msa0894030 AT2G23230.2 33.333 546 349 9 10 545 55 595 2.55e-94 300
Msa0894030 AT4G16730.2 32.121 495 321 5 67 549 1 492 1.42e-93 295
Msa0894030 AT1G66020.1 32.169 544 360 6 11 548 56 596 3.63e-92 294
Msa0894030 AT2G23230.1 33.150 546 345 10 10 545 55 590 7.31e-92 294
Msa0894030 AT4G13280.1 34.206 535 311 9 21 548 22 522 3.66e-91 290
Msa0894030 AT1G48800.1 30.769 546 362 9 11 546 63 602 1.03e-88 285
Msa0894030 AT4G16740.1 31.171 555 359 10 6 549 21 563 9.01e-88 282
Msa0894030 AT2G24210.1 30.645 558 368 9 4 549 39 589 1.50e-85 277
Msa0894030 AT1G61680.1 31.687 486 322 3 48 528 77 557 2.98e-85 275
Msa0894030 AT3G25810.1 31.664 559 357 12 9 549 45 596 1.22e-84 275
Msa0894030 AT3G25820.1 30.380 553 369 11 9 549 45 593 5.16e-84 273
Msa0894030 AT3G25830.1 30.380 553 369 11 9 549 45 593 5.16e-84 273
Msa0894030 AT5G48110.1 37.353 340 208 5 210 548 2 337 4.39e-82 260
Msa0894030 AT1G61680.2 31.276 486 317 4 48 528 77 550 5.75e-82 266
Msa0894030 AT1G48820.1 30.612 539 324 12 11 543 63 557 3.10e-77 254
Msa0894030 AT4G16740.2 35.112 356 213 6 6 351 21 368 1.18e-67 224
Msa0894030 AT1G66020.2 34.417 369 233 6 11 373 56 421 4.71e-65 218
Msa0894030 AT3G25820.2 32.124 386 243 8 9 383 45 422 4.72e-63 213
Msa0894030 AT4G16740.4 34.954 329 196 6 6 324 21 341 1.24e-59 202
Msa0894030 AT4G16740.3 34.954 329 196 6 6 324 21 341 1.24e-59 202
Msa0894030 AT3G25820.4 33.333 327 199 9 9 324 45 363 2.68e-54 189
Msa0894030 AT3G25820.3 33.333 327 199 9 9 324 45 363 2.68e-54 189
Msa0894030 AT1G61120.1 24.514 514 344 13 62 548 286 782 2.14e-28 120
Msa0894030 AT1G79460.1 23.017 517 353 18 64 548 274 777 1.43e-26 115
Msa0894030 AT4G02780.1 30.859 256 147 7 67 294 334 587 3.62e-23 104

Find 92 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTATTGCTGTGCTATTT+AGG 0.092626 6_1:-79075386 Msa0894030:CDS
TCTACTTACGTTGGCAAAAT+TGG 0.135143 6_1:-79074658 Msa0894030:CDS
TTCTATTGCTGTGCTATTTA+GGG 0.199483 6_1:-79075385 Msa0894030:CDS
AACCTACATCAAAAGGAATT+TGG 0.224102 6_1:-79074618 Msa0894030:CDS
CTGCTGTTCATTGCAGGCTT+AGG 0.241228 6_1:-79073137 Msa0894030:CDS
ACGTAAGTAGAATTTCATTA+TGG 0.259315 6_1:+79074670 None:intergenic
GATTCATGGTGAGAAAATTT+TGG 0.259321 6_1:-79074856 Msa0894030:CDS
TCCGTATGCTTCAGAATCTT+TGG 0.269105 6_1:-79076186 Msa0894030:intron
ATGCTGCTGCTGTTCATTGC+AGG 0.286868 6_1:-79073143 Msa0894030:CDS
CAGATTTCCACCCTAGCGTT+TGG 0.305039 6_1:-79076223 Msa0894030:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.318717 6_1:-79076222 Msa0894030:CDS
AGACGAAATTAATCAAGTTT+TGG 0.321368 6_1:-79075466 Msa0894030:CDS
AATTGACTCAATATGTCGTT+TGG 0.326217 6_1:-79075508 Msa0894030:CDS
TTCCTTGCTTGTCCTTGAAT+TGG 0.334271 6_1:+79074946 None:intergenic
TAGTTGTTTGGATGATCTTC+CGG 0.341349 6_1:-79074002 Msa0894030:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6_1:-79074435 Msa0894030:CDS
TTATATGAGGGAATATGATA+TGG 0.360767 6_1:-79072788 Msa0894030:CDS
GTCGTCAATGTATGATAAAA+TGG 0.369007 6_1:+79074348 None:intergenic
CCAATTGAAGATATCATTTG+TGG 0.372281 6_1:+79073191 None:intergenic
TTCATGTACTCCTCTGTTGT+TGG 0.374525 6_1:+79073282 None:intergenic
TGCTGTTCATTGCAGGCTTA+GGG 0.376798 6_1:-79073136 Msa0894030:CDS
CCACAAATGATATCTTCAAT+TGG 0.377027 6_1:-79073191 Msa0894030:CDS
CGTAAGTAGAATTTCATTAT+GGG 0.378944 6_1:+79074671 None:intergenic
GGAATTTGATATAAATATTA+CGG 0.379007 6_1:-79075610 Msa0894030:CDS
AAACGTAATGGAACTTTAGT+TGG 0.382677 6_1:+79072688 None:intergenic
TAGGTGGGATATTAGTTGTT+TGG 0.387739 6_1:-79074014 Msa0894030:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6_1:+79074692 None:intergenic
CATACTTGGAATGTTATATG+AGG 0.398446 6_1:-79072801 Msa0894030:CDS
AGGACATGTTGCTTCATACT+TGG 0.399041 6_1:-79072815 Msa0894030:CDS
ATATAAATGAGGAATGTCTT+AGG 0.410838 6_1:-79072711 Msa0894030:CDS
TCGCAAGAGAAGGACTCAAT+TGG 0.412353 6_1:+79074787 None:intergenic
AAAAGAAAATTGACAATGCT+TGG 0.419595 6_1:-79072738 Msa0894030:CDS
TAGAGAAACTTCATGTAATC+CGG 0.427919 6_1:+79073983 None:intergenic
GTTTCTCTATAAACCACTCT+TGG 0.439981 6_1:-79073969 Msa0894030:CDS
GTAGGTCTTCATTAGTCCTT+CGG 0.442180 6_1:+79072594 None:intergenic
ATTGACTCAATATGTCGTTT+GGG 0.443010 6_1:-79075507 Msa0894030:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6_1:-79073223 Msa0894030:CDS
CACAAATGATATCTTCAATT+GGG 0.456797 6_1:-79073190 Msa0894030:CDS
ACTACTCTGTCCCGTGCATA+AGG 0.457542 6_1:+79074451 None:intergenic
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_1:-79073222 Msa0894030:CDS
TTCCTTGCTTGACAATATTG+AGG 0.465049 6_1:+79074391 None:intergenic
GCCTCACATATGATGATTCA+TGG 0.465433 6_1:-79074870 Msa0894030:CDS
GCTCCAAAACCTACATCAAA+AGG 0.468120 6_1:-79074625 Msa0894030:CDS
GAGCAAGAAGTGAAGAAAGA+AGG 0.476258 6_1:-79073929 Msa0894030:CDS
ACCAAAATCAATGCTCATGT+TGG 0.476318 6_1:+79072544 None:intergenic
AGATGTATTCAACCAATTCA+AGG 0.477088 6_1:-79074958 Msa0894030:CDS
CGCAAGAGAAGGACTCAATT+GGG 0.484801 6_1:+79074788 None:intergenic
CCAAAATCAATGCTCATGTT+GGG 0.485248 6_1:+79072545 None:intergenic
AACATTGATCATAGATGTTG+AGG 0.512550 6_1:-79074913 Msa0894030:CDS
ATCAATGCTCATGTTGGGAT+GGG 0.522554 6_1:+79072550 None:intergenic
TAAGAAGTCGTAGCCAACAC+TGG 0.522936 6_1:+79073234 None:intergenic
CATGGTCTTTACGTTTCACC+TGG 0.523602 6_1:-79075351 Msa0894030:intron
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6_1:-79074491 Msa0894030:intron
AGCCTCAATATTGTCAAGCA+AGG 0.528176 6_1:-79074393 Msa0894030:CDS
AATCAATGCTCATGTTGGGA+TGG 0.533171 6_1:+79072549 None:intergenic
TGGCCTCACTCATGTAAGCT+TGG 0.536408 6_1:+79073328 None:intergenic
GATTTCCACCCTAGCGTTTG+GGG 0.542721 6_1:-79076221 Msa0894030:CDS
TTGTCAAGCAAGGAAAATGA+TGG 0.545763 6_1:-79074383 Msa0894030:CDS
TAGCTTCTTGCCTCTAGCCT+AGG 0.554871 6_1:+79074720 None:intergenic
ATACTTGGAATGTTATATGA+GGG 0.559157 6_1:-79072800 Msa0894030:CDS
TTGACTTGTGTCGCAAGAGA+AGG 0.560387 6_1:+79074777 None:intergenic
CTTGCGACACAAGTCAAACA+TGG 0.567322 6_1:-79074771 Msa0894030:CDS
AATGGAGAAATAACTCTCAA+AGG 0.567506 6_1:-79075417 Msa0894030:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.568035 6_1:-79075369 Msa0894030:CDS
GACGAGCAAATCATTAATGT+AGG 0.569159 6_1:+79072576 None:intergenic
CTGTGCTATTTAGGGTGTTG+AGG 0.569842 6_1:-79075377 Msa0894030:CDS
ATCAAGTGGTTACCCAGTGT+TGG 0.570889 6_1:-79073247 Msa0894030:CDS
ATAGCACAGCAATAGAATGA+AGG 0.574698 6_1:+79075391 None:intergenic
AAGCTTACATGAGTGAGGCC+AGG 0.576657 6_1:-79073326 Msa0894030:CDS
ATTAAGTTGACTTTCTTCAA+CGG 0.581942 6_1:+79075528 None:intergenic
TTGGCTACGACTTCTTACAT+TGG 0.586299 6_1:-79073228 Msa0894030:CDS
ACCAAAGATTCTGAAGCATA+CGG 0.593001 6_1:+79076185 None:intergenic
ATTGGGTTGCAATTGACTCA+AGG 0.594526 6_1:+79074805 None:intergenic
AACACATCAACAATATCAAG+TGG 0.595383 6_1:-79073261 Msa0894030:CDS
ACATTGATCATAGATGTTGA+GGG 0.599537 6_1:-79074912 Msa0894030:CDS
GACGACACGTATGATGCATA+CGG 0.603543 6_1:-79074331 Msa0894030:CDS
TTTCCACCCTAGCGTTTGGG+GGG 0.604138 6_1:-79076219 Msa0894030:CDS
TAATGAAATTCTACTTACGT+TGG 0.604203 6_1:-79074667 Msa0894030:CDS
AACCAATTCAAGGACAAGCA+AGG 0.604565 6_1:-79074948 Msa0894030:CDS
TCTTCATAAACATCCAAGAG+TGG 0.606426 6_1:+79073956 None:intergenic
AAGAAGTCGTAGCCAACACT+GGG 0.613680 6_1:+79073235 None:intergenic
CTTTATATATAGGTGGTGGA+AGG 0.614852 6_1:-79074497 Msa0894030:intron
ATTTCCACCCTAGCGTTTGG+GGG 0.619288 6_1:-79076220 Msa0894030:CDS
AAACCTCAATAAAACACGAA+AGG 0.623774 6_1:+79072647 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 6_1:-79072722 Msa0894030:CDS
ATAATTAACATTCAACCACC+TGG 0.641064 6_1:+79073308 None:intergenic
ACCATGAATCATCATATGTG+AGG 0.641340 6_1:+79074869 None:intergenic
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6_1:-79073115 Msa0894030:intron
AGTCCAAGCTTACATGAGTG+AGG 0.665674 6_1:-79073331 Msa0894030:CDS
GATAACTACACACATTCCGA+AGG 0.666041 6_1:-79072610 Msa0894030:CDS
CTTACATGAGTGAGGCCAGG+TGG 0.678940 6_1:-79073323 Msa0894030:CDS
TAATTATATACCAACAACAG+AGG 0.728633 6_1:-79073292 Msa0894030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAATATATATATTACA+AGG + chr6_1:79073083-79073102 None:intergenic 10.0%
!!! ATTTAATTTTAAATTAAGGA+GGG + chr6_1:79074259-79074278 None:intergenic 10.0%
!!! AATTTAATTTTAAATTAAGG+AGG + chr6_1:79074260-79074279 None:intergenic 10.0%
!!! TTATAATGAAAATGAATTTT+AGG - chr6_1:79074788-79074807 Msa0894030:CDS 10.0%
!! GGAATTTGATATAAATATTA+CGG - chr6_1:79073211-79073230 Msa0894030:CDS 15.0%
!! GAATCATTAATATAAATAAG+TGG + chr6_1:79073507-79073526 None:intergenic 15.0%
!!! TAATTTTTTAACTTTGATCA+AGG - chr6_1:79073635-79073654 Msa0894030:intron 15.0%
!!! AATTTTTTAACTTTGATCAA+GGG - chr6_1:79073636-79073655 Msa0894030:intron 15.0%
!!! TAATATAAACCTCTAAAAAA+TGG - chr6_1:79073666-79073685 Msa0894030:intron 15.0%
!!! TTTTGTTACTAAAAATGTAA+AGG + chr6_1:79073704-79073723 None:intergenic 15.0%
!! ATAAAGACCAAAAATATTAT+AGG + chr6_1:79074310-79074329 None:intergenic 15.0%
!!! TATTTTTGGTCTTTATATAT+AGG - chr6_1:79074314-79074333 Msa0894030:CDS 15.0%
!!! ATTAAATAATAACTTTTAGG+TGG - chr6_1:79074670-79074689 Msa0894030:CDS 15.0%
!! TCTTATCATATATTTATACA+CGG - chr6_1:79074731-79074750 Msa0894030:CDS 15.0%
!! TTGAACAAAAGATTATATAT+TGG - chr6_1:79075329-79075348 Msa0894030:intron 15.0%
!! CATATTTACAAAAAATACAT+AGG - chr6_1:79075407-79075426 Msa0894030:CDS 15.0%
!! AATATAGTAGTATTGTTAAT+AGG + chr6_1:79075444-79075463 None:intergenic 15.0%
!! AATATAATAAGATGACATAA+TGG - chr6_1:79075878-79075897 Msa0894030:intron 15.0%
!! TTGTTCACGTAAAAAAAAAA+CGG + chr6_1:79072675-79072694 None:intergenic 20.0%
!! TATGTTATGAAAAGTGATTA+AGG - chr6_1:79072732-79072751 Msa0894030:CDS 20.0%
!! TCTATGTTAGTAATATTAAG+TGG + chr6_1:79072901-79072920 None:intergenic 20.0%
!!! ACACTTAATTGTTATTTGAA+AGG + chr6_1:79073143-79073162 None:intergenic 20.0%
!! GCAAATTGATAAACTAAAAA+AGG - chr6_1:79073235-79073254 Msa0894030:CDS 20.0%
!! AATTGATAAACTAAAAAAGG+AGG - chr6_1:79073238-79073257 Msa0894030:CDS 20.0%
!!! ATTTTTTAACTTTGATCAAG+GGG - chr6_1:79073637-79073656 Msa0894030:intron 20.0%
!!! CTAATTGCCTATAATATTTT+TGG - chr6_1:79074300-79074319 Msa0894030:CDS 20.0%
!!! GTTTTTCTATCTCTAAATTT+TGG + chr6_1:79074605-79074624 None:intergenic 20.0%
!!! TAATGAAAATGAATTTTAGG+TGG - chr6_1:79074791-79074810 Msa0894030:CDS 20.0%
!!! AATGAAAATGAATTTTAGGT+GGG - chr6_1:79074792-79074811 Msa0894030:CDS 20.0%
!!! TGTTATCAGAATGAAATTTT+AGG - chr6_1:79075040-79075059 Msa0894030:intron 20.0%
!!! TTTTGTTGAACTATTATCTA+CGG + chr6_1:79075367-79075386 None:intergenic 20.0%
!!! ATTGTTCATTTTTGTAAACA+AGG - chr6_1:79075796-79075815 Msa0894030:intron 20.0%
!! CTTATTATATTAACTCTTGA+CGG + chr6_1:79075869-79075888 None:intergenic 20.0%
! TGTTCACGTAAAAAAAAAAC+GGG + chr6_1:79072674-79072693 None:intergenic 25.0%
! GAATAAAACCAAGAGAAAAT+AGG - chr6_1:79072792-79072811 Msa0894030:CDS 25.0%
! ATATTGTTAGCAATAGCAAT+AGG - chr6_1:79072920-79072939 Msa0894030:intron 25.0%
! ATGTGTAACAATATCTATGT+TGG + chr6_1:79072976-79072995 None:intergenic 25.0%
! TTCAAGAATGCCAATAATAT+AGG - chr6_1:79073098-79073117 Msa0894030:intron 25.0%
! GTCAAAAGATCCTATATTAT+TGG + chr6_1:79073111-79073130 None:intergenic 25.0%
!!! ATTAAGTTGACTTTCTTCAA+CGG + chr6_1:79073296-79073315 None:intergenic 25.0%
!! AGACGAAATTAATCAAGTTT+TGG - chr6_1:79073355-79073374 Msa0894030:intron 25.0%
!! AAACCTCTAAAAAATGGTTT+AGG - chr6_1:79073672-79073691 Msa0894030:intron 25.0%
!!! ATACCTAAACCATTTTTTAG+AGG + chr6_1:79073678-79073697 None:intergenic 25.0%
! CGTAAGTAGAATTTCATTAT+GGG + chr6_1:79074153-79074172 None:intergenic 25.0%
! ACGTAAGTAGAATTTCATTA+TGG + chr6_1:79074154-79074173 None:intergenic 25.0%
! TAATGAAATTCTACTTACGT+TGG - chr6_1:79074154-79074173 Msa0894030:intron 25.0%
!!! TTTTGGTCTTTATATATAGG+TGG - chr6_1:79074317-79074336 Msa0894030:CDS 25.0%
!! TGAGTTAGAACTTTTTACTA+AGG - chr6_1:79074522-79074541 Msa0894030:intron 25.0%
!! GAGTTAGAACTTTTTACTAA+GGG - chr6_1:79074523-79074542 Msa0894030:intron 25.0%
!! TTTTTACTAAGGGAATTGAA+AGG - chr6_1:79074533-79074552 Msa0894030:intron 25.0%
!! GTCTAATTTTGTCAACAAAA+GGG - chr6_1:79074753-79074772 Msa0894030:CDS 25.0%
!!! TTCTTTTAAGAAGTGGTTAA+TGG + chr6_1:79074929-79074948 None:intergenic 25.0%
!!! CTATATTTTTGAACTGTCAT+TGG + chr6_1:79075472-79075491 None:intergenic 25.0%
! TAATTATATACCAACAACAG+AGG - chr6_1:79075529-79075548 Msa0894030:CDS 25.0%
! CACAAATGATATCTTCAATT+GGG - chr6_1:79075631-79075650 Msa0894030:intron 25.0%
! ATTTCACACAATATTCTTTG+TGG - chr6_1:79075753-79075772 Msa0894030:intron 25.0%
! ATACTTGGAATGTTATATGA+GGG - chr6_1:79076021-79076040 Msa0894030:intron 25.0%
! TTATATGAGGGAATATGATA+TGG - chr6_1:79076033-79076052 Msa0894030:intron 25.0%
!!! AAGCATTGTCAATTTTCTTT+TGG + chr6_1:79076084-79076103 None:intergenic 25.0%
! AAAAGAAAATTGACAATGCT+TGG - chr6_1:79076083-79076102 Msa0894030:intron 25.0%
! ATATAAATGAGGAATGTCTT+AGG - chr6_1:79076110-79076129 Msa0894030:intron 25.0%
! GTAGGTTATTTGTTAGCAAT+AGG - chr6_1:79072841-79072860 Msa0894030:intron 30.0%
TTAATTATACGATCCAAGTG+TGG + chr6_1:79072874-79072893 None:intergenic 30.0%
TTAATTATACGATCCAAGTG+TGG + chr6_1:79072874-79072893 None:intergenic 30.0%
GCAACGTTAGTAATATTAAG+TGG + chr6_1:79073036-79073055 None:intergenic 30.0%
AAGGTAAATTTGAATCCCTT+TGG + chr6_1:79073064-79073083 None:intergenic 30.0%
!!! TGCATGTTTTGATTACATAC+AGG - chr6_1:79073190-79073209 Msa0894030:CDS 30.0%
! AATTGACTCAATATGTCGTT+TGG - chr6_1:79073313-79073332 Msa0894030:CDS 30.0%
! ATTGACTCAATATGTCGTTT+GGG - chr6_1:79073314-79073333 Msa0894030:CDS 30.0%
!!! AGTTTTGGAAGATATTCACA+AGG - chr6_1:79073370-79073389 Msa0894030:intron 30.0%
! CACAAGGATTTTGTTCAAAA+TGG - chr6_1:79073386-79073405 Msa0894030:intron 30.0%
AATGGAGAAATAACTCTCAA+AGG - chr6_1:79073404-79073423 Msa0894030:intron 30.0%
!! ATTCTATTGCTGTGCTATTT+AGG - chr6_1:79073435-79073454 Msa0894030:intron 30.0%
!! TTCTATTGCTGTGCTATTTA+GGG - chr6_1:79073436-79073455 Msa0894030:intron 30.0%
TAAGTGGAGATATAAATACC+AGG + chr6_1:79073491-79073510 None:intergenic 30.0%
TTGAGTAAAACAAACTTGTG+TGG - chr6_1:79073555-79073574 Msa0894030:intron 30.0%
AGATGTATTCAACCAATTCA+AGG - chr6_1:79073863-79073882 Msa0894030:intron 30.0%
AACATTGATCATAGATGTTG+AGG - chr6_1:79073908-79073927 Msa0894030:CDS 30.0%
ACATTGATCATAGATGTTGA+GGG - chr6_1:79073909-79073928 Msa0894030:CDS 30.0%
! GATTCATGGTGAGAAAATTT+TGG - chr6_1:79073965-79073984 Msa0894030:CDS 30.0%
! ATTCCTTTTGATGTAGGTTT+TGG + chr6_1:79074202-79074221 None:intergenic 30.0%
AACCTACATCAAAAGGAATT+TGG - chr6_1:79074203-79074222 Msa0894030:intron 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6_1:79074208-79074227 None:intergenic 30.0%
! ATTTTAAATTAAGGAGGGTG+TGG + chr6_1:79074254-79074273 None:intergenic 30.0%
CTAAAAAACTACCTTATGCA+CGG - chr6_1:79074359-79074378 Msa0894030:CDS 30.0%
TAAAAAACTACCTTATGCAC+GGG - chr6_1:79074360-79074379 Msa0894030:CDS 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6_1:79074387-79074406 Msa0894030:CDS 30.0%
GTCGTCAATGTATGATAAAA+TGG + chr6_1:79074476-79074495 None:intergenic 30.0%
! GGTCTAATTTTGTCAACAAA+AGG - chr6_1:79074752-79074771 Msa0894030:CDS 30.0%
TAGAGAAACTTCATGTAATC+CGG + chr6_1:79074841-79074860 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+TGG + chr6_1:79074936-79074955 None:intergenic 30.0%
CTATGTATCTATACGAAGAA+TGG + chr6_1:79075079-79075098 None:intergenic 30.0%
TTCTAATCACAAGATATGCT+AGG + chr6_1:79075104-79075123 None:intergenic 30.0%
ATAATTAACATTCAACCACC+TGG + chr6_1:79075516-79075535 None:intergenic 30.0%
AACACATCAACAATATCAAG+TGG - chr6_1:79075560-79075579 Msa0894030:CDS 30.0%
CCAATTGAAGATATCATTTG+TGG + chr6_1:79075633-79075652 None:intergenic 30.0%
CCACAAATGATATCTTCAAT+TGG - chr6_1:79075630-79075649 Msa0894030:intron 30.0%
CATACTTGGAATGTTATATG+AGG - chr6_1:79076020-79076039 Msa0894030:intron 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG + chr6_1:79076071-79076090 None:intergenic 30.0%
TGCTTGGAAAGATATAAATG+AGG - chr6_1:79076099-79076118 Msa0894030:intron 30.0%
! AAACGTAATGGAACTTTAGT+TGG + chr6_1:79076136-79076155 None:intergenic 30.0%
AAACCTCAATAAAACACGAA+AGG + chr6_1:79076177-79076196 None:intergenic 30.0%
!! ACCAAAGATTCTGAAGCATA+CGG + chr6_1:79072639-79072658 None:intergenic 35.0%
!! TAGCTCTACCTATTTTCTCT+TGG + chr6_1:79072803-79072822 None:intergenic 35.0%
CTAACAAATAACCTACCCTT+TGG + chr6_1:79072837-79072856 None:intergenic 35.0%
AATAGGAATGAAACCACACT+TGG - chr6_1:79072858-79072877 Msa0894030:intron 35.0%
TAGGATTTCCAACATTTCTG+AGG - chr6_1:79072939-79072958 Msa0894030:intron 35.0%
AGGATTTCCAACATTTCTGA+GGG - chr6_1:79072940-79072959 Msa0894030:intron 35.0%
ATAGCACAGCAATAGAATGA+AGG + chr6_1:79073433-79073452 None:intergenic 35.0%
ATGATTGTTCAACATTGTCG+TGG - chr6_1:79073822-79073841 Msa0894030:intron 35.0%
ACCATGAATCATCATATGTG+AGG + chr6_1:79073955-79073974 None:intergenic 35.0%
!! TGGTGAGAAAATTTTGGAAG+AGG - chr6_1:79073971-79073990 Msa0894030:CDS 35.0%
!! GAAAATTTTGGAAGAGGCAT+TGG - chr6_1:79073977-79073996 Msa0894030:CDS 35.0%
TCTACTTACGTTGGCAAAAT+TGG - chr6_1:79074163-79074182 Msa0894030:intron 35.0%
TGGTCTTTATATATAGGTGG+TGG - chr6_1:79074320-79074339 Msa0894030:CDS 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6_1:79074324-79074343 Msa0894030:CDS 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6_1:79074386-79074405 Msa0894030:CDS 35.0%
!!! ATGTTGCTTTTGGGTTATGA+CGG - chr6_1:79074396-79074415 Msa0894030:CDS 35.0%
TTCCTTGCTTGACAATATTG+AGG + chr6_1:79074433-79074452 None:intergenic 35.0%
TTGTCAAGCAAGGAAAATGA+TGG - chr6_1:79074438-79074457 Msa0894030:CDS 35.0%
TAGGTGGGATATTAGTTGTT+TGG - chr6_1:79074807-79074826 Msa0894030:CDS 35.0%
TAGTTGTTTGGATGATCTTC+CGG - chr6_1:79074819-79074838 Msa0894030:CDS 35.0%
GTTTCTCTATAAACCACTCT+TGG - chr6_1:79074852-79074871 Msa0894030:CDS 35.0%
TCTTCATAAACATCCAAGAG+TGG + chr6_1:79074868-79074887 None:intergenic 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_1:79075598-79075617 Msa0894030:CDS 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_1:79075599-79075618 Msa0894030:CDS 35.0%
! GCAGCAGCATTAACAATTTT+CGG + chr6_1:79075668-79075687 None:intergenic 35.0%
AAACAGTTCGAGCAAAAAAG+AGG - chr6_1:79075986-79076005 Msa0894030:intron 35.0%
ACACACGTCAAAAAACGTAA+TGG + chr6_1:79076148-79076167 None:intergenic 35.0%
!! CAACCTTTCGTGTTTTATTG+AGG - chr6_1:79076171-79076190 Msa0894030:intron 35.0%
GACGAGCAAATCATTAATGT+AGG + chr6_1:79076248-79076267 None:intergenic 35.0%
TCCGTATGCTTCAGAATCTT+TGG - chr6_1:79072635-79072654 Msa0894030:CDS 40.0%
AGCTATAGCAAACACTCCAA+AGG - chr6_1:79072818-79072837 Msa0894030:CDS 40.0%
GCTATAGCAAACACTCCAAA+GGG - chr6_1:79072819-79072838 Msa0894030:CDS 40.0%
! TCCAACATTTCTGAGGGAAA+AGG - chr6_1:79072946-79072965 Msa0894030:intron 40.0%
! TCCTTTTCCCTCAGAAATGT+TGG + chr6_1:79072950-79072969 None:intergenic 40.0%
TTATACGATCCAAGTGTGGT+TGG + chr6_1:79072870-79072889 None:intergenic 40.0%
AACCAATTCAAGGACAAGCA+AGG - chr6_1:79073873-79073892 Msa0894030:intron 40.0%
TTCCTTGCTTGTCCTTGAAT+TGG + chr6_1:79073878-79073897 None:intergenic 40.0%
GCCTCACATATGATGATTCA+TGG - chr6_1:79073951-79073970 Msa0894030:CDS 40.0%
! ATTGGGTTGCAATTGACTCA+AGG + chr6_1:79074019-79074038 None:intergenic 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6_1:79074132-79074151 None:intergenic 40.0%
GCTCCAAAACCTACATCAAA+AGG - chr6_1:79074196-79074215 Msa0894030:intron 40.0%
AGCCTCAATATTGTCAAGCA+AGG - chr6_1:79074428-79074447 Msa0894030:CDS 40.0%
GAGCAAGAAGTGAAGAAAGA+AGG - chr6_1:79074892-79074911 Msa0894030:CDS 40.0%
TTCATGTACTCCTCTGTTGT+TGG + chr6_1:79075542-79075561 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_1:79075593-79075612 Msa0894030:CDS 40.0%
! AGGACATGTTGCTTCATACT+TGG - chr6_1:79076006-79076025 Msa0894030:intron 40.0%
GATAACTACACACATTCCGA+AGG - chr6_1:79076211-79076230 Msa0894030:CDS 40.0%
GTAGGTCTTCATTAGTCCTT+CGG + chr6_1:79076230-79076249 None:intergenic 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6_1:79072599-79072618 Msa0894030:CDS 45.0%
TAGCAAACACTCCAAAGGGT+AGG - chr6_1:79072823-79072842 Msa0894030:CDS 45.0%
ACTAACGTTGCACACTCCAA+AGG - chr6_1:79073045-79073064 Msa0894030:intron 45.0%
CTAACGTTGCACACTCCAAA+GGG - chr6_1:79073046-79073065 Msa0894030:intron 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6_1:79073444-79073463 Msa0894030:intron 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6_1:79073452-79073471 Msa0894030:intron 45.0%
CATGGTCTTTACGTTTCACC+TGG - chr6_1:79073470-79073489 Msa0894030:intron 45.0%
!!! GAGGCATTGGCTTTTACTTC+TGG - chr6_1:79073990-79074009 Msa0894030:CDS 45.0%
CGCAAGAGAAGGACTCAATT+GGG + chr6_1:79074036-79074055 None:intergenic 45.0%
TCGCAAGAGAAGGACTCAAT+TGG + chr6_1:79074037-79074056 None:intergenic 45.0%
!! TTGACTTGTGTCGCAAGAGA+AGG + chr6_1:79074047-79074066 None:intergenic 45.0%
CTTGCGACACAAGTCAAACA+TGG - chr6_1:79074050-79074069 Msa0894030:intron 45.0%
CAAAAACTTGCCTAGGCTAG+AGG - chr6_1:79074091-79074110 Msa0894030:intron 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6_1:79074330-79074349 Msa0894030:CDS 45.0%
GACGACACGTATGATGCATA+CGG - chr6_1:79074490-79074509 Msa0894030:intron 45.0%
AGTCCAAGCTTACATGAGTG+AGG - chr6_1:79075490-79075509 Msa0894030:CDS 45.0%
ATCAAGTGGTTACCCAGTGT+TGG - chr6_1:79075574-79075593 Msa0894030:CDS 45.0%
AAGAAGTCGTAGCCAACACT+GGG + chr6_1:79075589-79075608 None:intergenic 45.0%
TAAGAAGTCGTAGCCAACAC+TGG + chr6_1:79075590-79075609 None:intergenic 45.0%
TGCTGTTCATTGCAGGCTTA+GGG - chr6_1:79075685-79075704 Msa0894030:intron 45.0%
GGATGAAATTGTGTCTAGCG+AGG - chr6_1:79075706-79075725 Msa0894030:intron 45.0%
!!! TCATTTTTTATATTTTAATT+TGG - chr6_1:79073525-79073544 Msa0894030:intron 5.0%
!!! TTCAATTTAATTTTAAATTA+AGG + chr6_1:79074263-79074282 None:intergenic 5.0%
!!! AAAATTAAATAATAACTTTT+AGG - chr6_1:79074667-79074686 Msa0894030:CDS 5.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6_1:79072598-79072617 Msa0894030:CDS 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6_1:79072600-79072619 Msa0894030:CDS 50.0%
ATTTCCACCCTAGCGTTTGG+GGG - chr6_1:79072601-79072620 Msa0894030:CDS 50.0%
CATTGCACACCAACCACACT+TGG - chr6_1:79072993-79073012 Msa0894030:intron 50.0%
! CTAGGCAAGTTTTTGCGCAG+AGG + chr6_1:79074086-79074105 None:intergenic 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6_1:79074084-79074103 Msa0894030:intron 50.0%
TAGCTTCTTGCCTCTAGCCT+AGG + chr6_1:79074104-79074123 None:intergenic 50.0%
ACTACTCTGTCCCGTGCATA+AGG + chr6_1:79074373-79074392 None:intergenic 50.0%
TGGCCTCACTCATGTAAGCT+TGG + chr6_1:79075496-79075515 None:intergenic 50.0%
AAGCTTACATGAGTGAGGCC+AGG - chr6_1:79075495-79075514 Msa0894030:CDS 50.0%
ATGCTGCTGCTGTTCATTGC+AGG - chr6_1:79075678-79075697 Msa0894030:intron 50.0%
CTGCTGTTCATTGCAGGCTT+AGG - chr6_1:79075684-79075703 Msa0894030:intron 50.0%
TTTCCACCCTAGCGTTTGGG+GGG - chr6_1:79072602-79072621 Msa0894030:CDS 55.0%
AGAAGTCCCCCCAAACGCTA+GGG + chr6_1:79072611-79072630 None:intergenic 55.0%
AAGAAGTCCCCCCAAACGCT+AGG + chr6_1:79072612-79072631 None:intergenic 55.0%
CTTACATGAGTGAGGCCAGG+TGG - chr6_1:79075498-79075517 Msa0894030:CDS 55.0%
AGTCCCCCCAAACGCTAGGG+TGG + chr6_1:79072608-79072627 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 79072558 79076285 79072558 ID=Msa0894030;Name=Msa0894030
chr6_1 mRNA 79072558 79076285 79072558 ID=Msa0894030-mRNA-1;Parent=Msa0894030;Name=Msa0894030-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|7|0|550
chr6_1 exon 79076187 79076285 79076187 ID=Msa0894030-mRNA-1:exon:13250;Parent=Msa0894030-mRNA-1
chr6_1 exon 79075352 79075631 79075352 ID=Msa0894030-mRNA-1:exon:13249;Parent=Msa0894030-mRNA-1
chr6_1 exon 79074606 79074978 79074606 ID=Msa0894030-mRNA-1:exon:13248;Parent=Msa0894030-mRNA-1
chr6_1 exon 79074289 79074507 79074289 ID=Msa0894030-mRNA-1:exon:13247;Parent=Msa0894030-mRNA-1
chr6_1 exon 79073895 79074033 79073895 ID=Msa0894030-mRNA-1:exon:13246;Parent=Msa0894030-mRNA-1
chr6_1 exon 79073116 79073364 79073116 ID=Msa0894030-mRNA-1:exon:13245;Parent=Msa0894030-mRNA-1
chr6_1 exon 79072558 79072851 79072558 ID=Msa0894030-mRNA-1:exon:13244;Parent=Msa0894030-mRNA-1
chr6_1 CDS 79076187 79076285 79076187 ID=Msa0894030-mRNA-1:cds;Parent=Msa0894030-mRNA-1
chr6_1 CDS 79075352 79075631 79075352 ID=Msa0894030-mRNA-1:cds;Parent=Msa0894030-mRNA-1
chr6_1 CDS 79074606 79074978 79074606 ID=Msa0894030-mRNA-1:cds;Parent=Msa0894030-mRNA-1
chr6_1 CDS 79074289 79074507 79074289 ID=Msa0894030-mRNA-1:cds;Parent=Msa0894030-mRNA-1
chr6_1 CDS 79073895 79074033 79073895 ID=Msa0894030-mRNA-1:cds;Parent=Msa0894030-mRNA-1
chr6_1 CDS 79073116 79073364 79073116 ID=Msa0894030-mRNA-1:cds;Parent=Msa0894030-mRNA-1
chr6_1 CDS 79072558 79072851 79072558 ID=Msa0894030-mRNA-1:cds;Parent=Msa0894030-mRNA-1
Gene Sequence

>Msa0894030

ATGTCTCATAACGAGAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGAATTTGATATAAATATTACGGCGCAAATTGATAAACTAAAAAAGGAGGCTAGACAAATGATTGTCTCAAAAATTGAGAATCCGTTGAAGAAAGTCAACTTAATTGACTCAATATGTCGTTTGGGTGTGAGCTATTATTTTGAAGACGAAATTAATCAAGTTTTGGAAGATATTCACAAGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGAAACCTTCATTCTATTGCTGTGCTATTTAGGGTGTTGAGGCAACATGGTCTTTACGTTTCACCTGATGTATTCAACCAATTCAAGGACAAGCAAGGAAATTTTAGTGAAACATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGATTCATGGTGAGAAAATTTTGGAAGAGGCATTGGCTTTTACTTCTGGTCACCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGACACAAGTCAAACATGGCTTAAGACATCCTCTGCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAACCTACATCAAAAGGAATTTGGAAACATTTGCAAGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAATGATGGCAAAAGTAATCTCCATTTTATCATACATTGACGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGGAATTGAAAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATAGAGCAAGAAGTGAAGAAAGAAGGAAGATTATACGCCATTAACCACTTCTTAAAAGAATTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAATTATATACCAACAACAGAGGAGTACATGAACACATCAACAATATCAAGTGGTTACCCAGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCCACAAATGATATCTTCAATTGGGTAACTAACAATCCGAAAATTGTTAATGCTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCGAGTTCGAGCAAAAAAGAGGACATGTTGCTTCATACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGTTGCCATTCAAGAATGCCAAAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTACGTTTTTTGACGTGTGTTCTCAACCTTTCGTGTTTTATTGAGGTTTTTTACAAAGATGAAGATAACTACACACATTCCGAAGGACTAATGAAGACCTACATTAATGATTTGCTCGTCAATCCCATCCCAACATGA
Protein sequence

>Msa0894030

MSHNEKSVLQRNVADFHPSVWGDFFIPYASESLEFDINITAQIDKLKKEARQMIVSKIENPLKKVNLIDSICRLGVSYYFEDEINQVLEDIHKDFVQNGEITLKGNLHSIAVLFRVLRQHGLYVSPDVFNQFKDKQGNFSETLIIDVEGMLNLYEASHMMIHGEKILEEALAFTSGHLESIATQLSPSLATQVKHGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQNLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKMMAKVISILSYIDDTYDAYGTIDELELFTKGIERWDISCLDDLPDYMKFLYKPLLDVYEEIEQEVKKEGRLYAINHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPVLATTSYIGMGNIATNDIFNWVTNNPKIVNAAAVHCRLRDEIVSSEFEQKRGHVASYLECYMREYDMDREVAIQECQKKIDNAWKDINEECLRPTKVPLRFLTCVLNLSCFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT*