AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0995580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0995580 MtrunA17_Chr7g0236991 69.009 555 169 1 1 555 1 552 0.0 817
Msa0995580 MtrunA17_Chr7g0237001 68.829 555 170 1 1 555 1 552 0.0 815
Msa0995580 MtrunA17_Chr7g0237041 68.829 555 170 1 1 555 1 552 0.0 815
Msa0995580 MtrunA17_Chr7g0237081 68.829 555 170 1 1 555 1 552 0.0 815
Msa0995580 MtrunA17_Chr7g0237051 68.829 555 170 1 1 555 1 552 0.0 815
Msa0995580 MtrunA17_Chr6g0465441 68.659 552 173 0 4 555 1 552 0.0 815
Msa0995580 MtrunA17_Chr5g0425371 69.730 555 165 1 1 555 1 552 0.0 806
Msa0995580 MtrunA17_Chr6g0465911 67.754 552 178 0 4 555 1 552 0.0 799
Msa0995580 MtrunA17_Chr4g0024691 68.174 553 176 0 3 555 8 560 0.0 796
Msa0995580 MtrunA17_Chr6g0466051 67.572 552 179 0 4 555 1 552 0.0 796
Msa0995580 MtrunA17_Chr6g0451711 66.727 556 184 1 1 555 1 556 0.0 793
Msa0995580 MtrunA17_Chr3g0105071 66.486 555 185 1 1 554 1 555 0.0 780
Msa0995580 MtrunA17_Chr6g0465851 69.052 517 160 0 39 555 1 517 0.0 755
Msa0995580 MtrunA17_Chr3g0082691 65.138 545 189 1 12 555 8 552 0.0 753
Msa0995580 MtrunA17_Chr7g0236961 70.020 497 149 0 59 555 1 497 0.0 749
Msa0995580 MtrunA17_Chr7g0237011 70.020 497 149 0 59 555 1 497 0.0 748
Msa0995580 MtrunA17_Chr5g0431651 63.734 557 194 3 1 555 1 551 0.0 741
Msa0995580 MtrunA17_Chr5g0431571 65.809 544 185 1 12 554 4 547 0.0 740
Msa0995580 MtrunA17_Chr4g0042111 57.554 556 233 2 2 555 7 561 0.0 667
Msa0995580 MtrunA17_Chr7g0236971 69.750 400 121 0 156 555 1 400 0.0 606
Msa0995580 MtrunA17_Chr6g0465981 68.097 373 119 0 4 376 1 373 0.0 543
Msa0995580 MtrunA17_Chr6g0465871 68.097 373 119 0 4 376 1 373 0.0 543
Msa0995580 MtrunA17_Chr6g0466081 68.097 373 119 0 4 376 1 373 0.0 543
Msa0995580 MtrunA17_Chr6g0466111 70.118 338 101 0 39 376 1 338 8.86e-176 499
Msa0995580 MtrunA17_Chr2g0319041 45.788 546 288 7 15 554 12 555 3.21e-175 506
Msa0995580 MtrunA17_Chr6g0465931 69.822 338 102 0 39 376 1 338 1.34e-174 496
Msa0995580 MtrunA17_Chr8g0336181 46.168 548 287 6 13 554 9 554 3.55e-172 499
Msa0995580 MtrunA17_Chr7g0236951 71.429 315 90 0 59 373 1 315 1.08e-169 483
Msa0995580 MtrunA17_Chr7g0237031 71.429 315 90 0 59 373 1 315 2.89e-169 482
Msa0995580 MtrunA17_Chr2g0319051 45.401 511 273 6 48 554 4 512 2.20e-162 472
Msa0995580 MtrunA17_Chr4g0008621 44.471 416 225 5 1 410 3 418 6.15e-124 371
Msa0995580 MtrunA17_Chr6g0466031 65.251 259 90 0 297 555 1 259 2.26e-121 358
Msa0995580 MtrunA17_Chr5g0445511 66.527 239 80 0 151 389 1 239 4.06e-116 343
Msa0995580 MtrunA17_Chr2g0319071 37.911 517 271 10 44 556 19 489 3.21e-115 350
Msa0995580 MtrunA17_Chr4g0023911 34.615 546 346 4 13 554 41 579 1.04e-113 350
Msa0995580 MtrunA17_Chr7g0237061 61.390 259 77 2 297 555 1 236 5.30e-109 325
Msa0995580 MtrunA17_Chr2g0323131 35.922 515 307 9 49 556 67 565 3.91e-108 335
Msa0995580 MtrunA17_Chr2g0310331 35.675 541 338 6 17 555 53 585 5.49e-108 335
Msa0995580 MtrunA17_Chr2g0323151 35.583 489 298 5 71 555 4 479 1.48e-104 323
Msa0995580 MtrunA17_Chr8g0357411 33.455 550 357 5 8 555 46 588 2.97e-97 307
Msa0995580 MtrunA17_Chr7g0237071 69.802 202 61 0 59 260 1 202 4.28e-95 289
Msa0995580 MtrunA17_Chr6g0466021 65.174 201 70 0 4 204 1 201 2.10e-91 279
Msa0995580 MtrunA17_Chr4g0048921 32.427 515 335 6 44 554 64 569 2.34e-87 281
Msa0995580 MtrunA17_Chr4g0048911 30.909 550 367 10 5 548 14 556 2.50e-84 273
Msa0995580 MtrunA17_Chr7g0237021 68.421 171 54 0 385 555 1 171 4.83e-84 259
Msa0995580 MtrunA17_Chr7g0236941 68.421 171 54 0 385 555 1 171 4.83e-84 259
Msa0995580 MtrunA17_Chr6g0465941 66.667 171 57 0 385 555 1 171 1.06e-79 247
Msa0995580 MtrunA17_Chr6g0466121 66.667 171 57 0 385 555 1 171 1.06e-79 247
Msa0995580 MtrunA17_Chr6g0465991 66.667 171 57 0 385 555 1 171 1.06e-79 247
Msa0995580 MtrunA17_Chr6g0466091 66.667 171 57 0 385 555 1 171 1.06e-79 247
Msa0995580 MtrunA17_Chr6g0465881 66.082 171 58 0 385 555 1 171 6.62e-79 245
Msa0995580 MtrunA17_Chr2g0280581 30.095 525 340 9 42 547 2 518 1.29e-76 251
Msa0995580 MtrunA17_Chr2g0319081 39.815 324 176 7 234 554 118 425 7.60e-75 244
Msa0995580 MtrunA17_Chr2g0319081 37.681 138 83 2 1 135 3 140 1.55e-23 103
Msa0995580 MtrunA17_Chr2g0310401 32.944 428 284 2 130 555 5 431 1.09e-73 241
Msa0995580 MtrunA17_Chr5g0445501 61.404 171 66 0 385 555 1 171 6.14e-73 230
Msa0995580 MtrunA17_Chr3g0108941 30.019 513 331 10 54 550 13 513 1.01e-71 238
Msa0995580 MtrunA17_Chr3g0109021 30.847 496 318 9 54 534 13 498 1.06e-70 236
Msa0995580 MtrunA17_Chr3g0109001 30.382 497 320 9 54 534 13 499 1.56e-70 235
Msa0995580 MtrunA17_Chr7g0236921 64.968 157 51 1 403 555 1 157 1.88e-70 223
Msa0995580 MtrunA17_Chr3g0109031 30.204 490 329 8 54 534 13 498 4.21e-70 234
Msa0995580 MtrunA17_Chr6g0477111 30.561 481 310 8 73 538 6 477 1.52e-69 232
Msa0995580 MtrunA17_Chr3g0105691 30.266 489 330 6 54 534 46 531 4.31e-69 232
Msa0995580 MtrunA17_Chr3g0108991 30.040 496 322 9 54 534 13 498 9.09e-68 228
Msa0995580 MtrunA17_Chr3g0108951 30.040 496 322 9 54 534 13 498 9.09e-68 228
Msa0995580 MtrunA17_Chr3g0108981 29.979 477 311 6 73 534 6 474 1.91e-67 226
Msa0995580 MtrunA17_Chr3g0108961 29.979 477 311 6 73 534 6 474 1.91e-67 226
Msa0995580 MtrunA17_Chr3g0099031 30.000 510 334 10 54 550 13 512 9.15e-66 222
Msa0995580 MtrunA17_Chr7g0236931 62.745 153 54 1 403 555 1 150 1.84e-65 209
Msa0995580 MtrunA17_Chr3g0108971 29.769 477 311 8 73 534 6 473 1.93e-65 221
Msa0995580 MtrunA17_Chr3g0109011 29.560 477 312 8 73 534 6 473 3.64e-65 220
Msa0995580 MtrunA17_Chr6g0477121 29.512 410 278 6 133 534 10 416 3.64e-57 197
Msa0995580 MtrunA17_Chr7g0236981 62.222 135 48 1 1 135 1 132 2.57e-53 177
Msa0995580 MtrunA17_Chr7g0233861 62.963 135 41 1 196 330 33 158 2.42e-51 174
Msa0995580 MtrunA17_Chr7g0217361 33.667 300 198 1 255 553 8 307 1.20e-50 176
Msa0995580 MtrunA17_Chr8g0357221 37.551 245 144 4 9 251 47 284 2.92e-43 155
Msa0995580 MtrunA17_Chr5g0445521 62.766 94 35 0 1 94 1 94 1.62e-35 129
Msa0995580 MtrunA17_Chr5g0445401 71.579 95 23 2 166 257 1 94 9.21e-35 126
Msa0995580 MtrunA17_Chr8g0357231 29.730 259 180 2 298 555 1 258 2.21e-34 130
Msa0995580 MtrunA17_Chr2g0310121 24.419 516 348 15 70 554 275 779 3.06e-33 135
Msa0995580 MtrunA17_Chr3g0101681 25.869 518 338 16 70 554 276 780 3.15e-33 135
Msa0995580 MtrunA17_Chr3g0082711 47.826 115 43 1 441 555 1 98 6.97e-32 118
Msa0995580 MtrunA17_Chr7g0259881 29.368 269 160 7 73 313 232 498 3.02e-26 113
Msa0995580 MtrunA17_Chr7g0218001 31.111 270 152 7 73 310 349 616 1.35e-24 108
Msa0995580 MtrunA17_Chr7g0217351 29.493 217 144 5 46 258 62 273 1.91e-21 95.1
Msa0995580 MtrunA17_Chr2g0281651 26.087 276 195 6 233 505 43 312 1.40e-18 88.2
Msa0995580 MtrunA17_Chr7g0218041 31.667 240 137 7 120 334 3 240 8.80e-17 82.8
Msa0995580 MtrunA17_Chr5g0411111 38.889 126 62 5 120 234 3 124 9.29e-14 68.6
Msa0995580 MtrunA17_Chr2g0310411 31.707 123 74 4 10 131 51 164 3.89e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0995580 AT5G23960.2 39.377 546 324 5 13 555 3 544 1.10e-147 436
Msa0995580 AT5G23960.1 39.416 548 323 6 13 555 3 546 1.06e-146 434
Msa0995580 AT1G70080.1 37.455 558 339 7 5 554 54 609 9.26e-127 384
Msa0995580 AT3G14490.1 37.143 560 337 8 3 555 49 600 3.38e-120 367
Msa0995580 AT3G14520.1 36.111 540 335 6 22 555 68 603 4.41e-120 367
Msa0995580 AT1G31950.1 35.926 540 336 5 22 555 70 605 5.79e-120 367
Msa0995580 AT1G31950.3 35.860 541 336 6 22 555 70 606 2.74e-119 365
Msa0995580 AT3G14540.1 36.364 539 335 4 22 555 65 600 4.14e-118 362
Msa0995580 AT5G44630.1 34.875 562 351 7 1 554 1 555 3.42e-113 348
Msa0995580 AT1G33750.1 34.644 534 343 4 24 555 73 602 1.68e-112 347
Msa0995580 AT3G32030.1 34.508 539 345 6 22 555 68 603 1.36e-111 345
Msa0995580 AT3G29410.1 34.622 543 347 6 17 555 64 602 4.80e-111 343
Msa0995580 AT4G13300.1 36.313 537 331 7 25 554 20 552 7.28e-110 339
Msa0995580 AT4G20210.1 34.249 546 346 7 17 554 58 598 3.96e-109 338
Msa0995580 AT4G15870.1 34.758 538 327 8 25 554 75 596 1.05e-106 332
Msa0995580 AT4G20200.1 35.328 518 317 9 48 554 92 602 2.62e-106 332
Msa0995580 AT3G29190.1 34.393 535 325 9 38 555 75 600 4.44e-106 331
Msa0995580 AT3G29410.2 34.800 500 320 4 59 555 1 497 5.76e-105 325
Msa0995580 AT4G13280.2 35.701 535 333 7 27 554 22 552 1.07e-103 323
Msa0995580 AT4G16730.1 31.793 541 352 7 28 555 2 538 3.42e-100 313
Msa0995580 AT1G31950.2 35.886 457 282 6 22 471 70 522 1.26e-99 312
Msa0995580 AT4G20230.2 32.500 560 353 10 6 552 66 613 3.14e-99 313
Msa0995580 AT4G20230.1 32.500 560 353 10 6 552 54 601 3.84e-99 313
Msa0995580 AT3G14540.2 36.771 446 275 3 22 463 65 507 1.15e-98 308
Msa0995580 AT2G23230.2 33.700 546 347 9 16 551 55 595 8.61e-97 307
Msa0995580 AT4G16730.2 32.323 495 320 5 73 555 1 492 1.51e-96 303
Msa0995580 AT3G29110.1 34.128 545 348 9 17 554 55 595 1.68e-96 306
Msa0995580 AT2G23230.1 33.516 546 343 10 16 551 55 590 3.41e-94 300
Msa0995580 AT1G66020.1 32.169 544 360 6 17 554 56 596 3.41e-93 297
Msa0995580 AT4G13280.1 34.579 535 309 9 27 554 22 522 2.03e-92 293
Msa0995580 AT1G48800.1 31.136 546 360 9 17 552 63 602 4.77e-91 291
Msa0995580 AT4G16740.1 31.532 555 357 10 12 555 21 563 1.87e-90 289
Msa0995580 AT2G24210.1 31.541 558 363 9 10 555 39 589 1.62e-89 287
Msa0995580 AT1G61680.1 31.725 539 344 7 3 534 36 557 2.07e-89 286
Msa0995580 AT1G61680.2 31.354 539 339 8 3 534 36 550 4.61e-86 278
Msa0995580 AT3G25820.1 31.183 558 358 12 15 555 45 593 7.13e-86 278
Msa0995580 AT3G25830.1 31.183 558 358 12 15 555 45 593 7.13e-86 278
Msa0995580 AT3G25810.1 30.906 563 356 12 15 555 45 596 1.52e-85 277
Msa0995580 AT5G48110.1 37.647 340 207 5 216 554 2 337 1.28e-83 264
Msa0995580 AT1G48820.1 30.612 539 324 11 17 549 63 557 1.05e-79 261
Msa0995580 AT4G16740.2 34.933 375 225 7 12 376 21 386 1.88e-68 226
Msa0995580 AT1G66020.2 34.417 369 233 6 17 379 56 421 6.87e-65 218
Msa0995580 AT3G25820.2 32.383 386 242 8 15 389 45 422 1.40e-63 215
Msa0995580 AT4G16740.4 35.258 329 195 6 12 330 21 341 3.43e-60 204
Msa0995580 AT4G16740.3 35.258 329 195 6 12 330 21 341 3.43e-60 204
Msa0995580 AT3G25820.4 33.639 327 198 8 15 330 45 363 1.13e-54 190
Msa0995580 AT3G25820.3 33.639 327 198 8 15 330 45 363 1.13e-54 190
Msa0995580 AT1G61120.1 24.319 514 345 13 68 554 286 782 1.88e-28 120
Msa0995580 AT1G79460.1 23.017 517 353 18 70 554 274 777 8.57e-27 115
Msa0995580 AT4G02780.1 30.859 256 147 7 73 300 334 587 3.03e-23 104

Find 91 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTATTGCTGTGCTATTT+AGG 0.092626 6_4:-72019995 Msa0995580:CDS
TCTACTTACGTTGGCAAAAT+TGG 0.135143 6_4:-72018963 Msa0995580:CDS
TTCTATTGCTGTGCTATTTA+GGG 0.199483 6_4:-72019994 Msa0995580:CDS
CTGCTGTTCATTGCAGGCTT+AGG 0.241228 6_4:-72017438 Msa0995580:CDS
AGCCTACATCAAAAGGAATT+TGG 0.257080 6_4:-72018923 Msa0995580:CDS
ACGTAAGTAGAATTTCATTA+TGG 0.259315 6_4:+72018975 None:intergenic
GATTCATGGTGAGAAAATTT+TGG 0.259321 6_4:-72019161 Msa0995580:CDS
TCCGTATGCTTCAGAATCTT+TGG 0.269105 6_4:-72020738 Msa0995580:intron
ATGCTGCTGCTGTTCATTGC+AGG 0.286868 6_4:-72017444 Msa0995580:CDS
CAGATTTCCACCCTAGCGTT+TGG 0.305039 6_4:-72020775 Msa0995580:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.318717 6_4:-72020774 Msa0995580:CDS
AGACGAAATTAATCAAGTTT+TGG 0.321368 6_4:-72020075 Msa0995580:CDS
TTCCTTGCTTGTCCTTGAAT+TGG 0.334271 6_4:+72019251 None:intergenic
TAGTTGTTTGGATGATCTTC+CGG 0.341349 6_4:-72018307 Msa0995580:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6_4:-72018740 Msa0995580:CDS
TTATATGAGGGAATATGATA+TGG 0.360767 6_4:-72017089 Msa0995580:CDS
GTCGTCAATGTATGATAAAA+TGG 0.369007 6_4:+72018653 None:intergenic
TTCATGTACTCCTCTGTTGT+TGG 0.374525 6_4:+72017583 None:intergenic
TGCTGTTCATTGCAGGCTTA+GGG 0.376798 6_4:-72017437 Msa0995580:CDS
CGTAAGTAGAATTTCATTAT+GGG 0.378944 6_4:+72018976 None:intergenic
AAACGTAATGGAACTTTAGT+TGG 0.382677 6_4:+72016989 None:intergenic
TAGGTGGGATATTAGTTGTT+TGG 0.387739 6_4:-72018319 Msa0995580:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6_4:+72018997 None:intergenic
GATTGACTCAATATGTCGTT+TGG 0.390339 6_4:-72020117 Msa0995580:CDS
CATACTTGGAATGTTATATG+AGG 0.398446 6_4:-72017102 Msa0995580:CDS
CTACAAATGATATCTTCAAT+TGG 0.398761 6_4:-72017492 Msa0995580:CDS
AGGACATGTTGCTTCATACT+TGG 0.399041 6_4:-72017116 Msa0995580:CDS
ATATAAATGAGGAATGTCTT+AGG 0.410838 6_4:-72017012 Msa0995580:CDS
TCGCAAGAGAAGGACTCAAT+TGG 0.412353 6_4:+72019092 None:intergenic
AAAAGAAAATTGACAATGCT+TGG 0.419595 6_4:-72017039 Msa0995580:CDS
TAGAGAAACTTCATGTAATC+CGG 0.427919 6_4:+72018288 None:intergenic
GTTTCTCTATAAACCACTCT+TGG 0.439981 6_4:-72018274 Msa0995580:CDS
GTAGGTCTTCATTAGTCCTT+CGG 0.442180 6_4:+72016895 None:intergenic
GCTCCAAAGCCTACATCAAA+AGG 0.450495 6_4:-72018930 Msa0995580:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6_4:-72017524 Msa0995580:CDS
ACTACTCTGTCCCGTGCATA+AGG 0.457542 6_4:+72018756 None:intergenic
TACAAATGATATCTTCAATT+GGG 0.459698 6_4:-72017491 Msa0995580:CDS
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_4:-72017523 Msa0995580:CDS
TTCCTTGCTTGACAATATTG+AGG 0.465049 6_4:+72018696 None:intergenic
GCCTCACATATGATGATTCA+TGG 0.465433 6_4:-72019175 Msa0995580:CDS
ATTGACTCAATATGTCGTTT+GGG 0.473862 6_4:-72020116 Msa0995580:CDS
GAGCATGAAGTGAAGAAAGA+AGG 0.476258 6_4:-72018234 Msa0995580:CDS
ACCAAAATCAATGCTCATGT+TGG 0.476318 6_4:+72016845 None:intergenic
AGATGTATTCAACCAATTCA+AGG 0.477088 6_4:-72019263 Msa0995580:CDS
CGCAAGAGAAGGACTCAATT+GGG 0.484801 6_4:+72019093 None:intergenic
CCAAAATCAATGCTCATGTT+GGG 0.485248 6_4:+72016846 None:intergenic
AACATTGATCATAGATGTTG+AGG 0.512550 6_4:-72019218 Msa0995580:CDS
AACAATATCAAGTGGTTACC+CGG 0.513550 6_4:-72017554 Msa0995580:CDS
ATCAATGCTCATGTTGGGAT+GGG 0.522554 6_4:+72016851 None:intergenic
CATGGTCTTTACGTTTCACC+TGG 0.523602 6_4:-72019960 Msa0995580:intron
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6_4:-72018796 Msa0995580:intron
AGCCTCAATATTGTCAAGCA+AGG 0.528176 6_4:-72018698 Msa0995580:CDS
AATCAATGCTCATGTTGGGA+TGG 0.533171 6_4:+72016850 None:intergenic
TGGCCTCACTCATGTAAGCT+TGG 0.536408 6_4:+72017629 None:intergenic
GGATGAAATTGTGTCTAGCC+AGG 0.538408 6_4:-72017416 Msa0995580:intron
ATCAAGTGGTTACCCGGTGT+TGG 0.539295 6_4:-72017548 Msa0995580:CDS
GATTTCCACCCTAGCGTTTG+GGG 0.542721 6_4:-72020773 Msa0995580:CDS
TTGTCAAGCAAGGAAAATGA+TGG 0.545763 6_4:-72018688 Msa0995580:CDS
TTGACTTGTGTCGCAAGAGA+AGG 0.551016 6_4:+72019082 None:intergenic
TAGCTTCTTGCCTCTAGCCT+AGG 0.554871 6_4:+72019025 None:intergenic
ATACTTGGAATGTTATATGA+GGG 0.559157 6_4:-72017101 Msa0995580:CDS
GGAATTTGATATAAATATTG+CGG 0.567112 6_4:-72020219 Msa0995580:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.568035 6_4:-72019978 Msa0995580:CDS
GACGAGCAAATCATTAATGT+AGG 0.569159 6_4:+72016877 None:intergenic
CTGTGCTATTTAGGGTGTTG+AGG 0.569842 6_4:-72019986 Msa0995580:CDS
AATGGAGAAATAACTCTCAA+AGG 0.571243 6_4:-72020026 Msa0995580:CDS
ATAGCACAGCAATAGAATGA+AGG 0.574698 6_4:+72020000 None:intergenic
TTGGCTACGACTTCTTACAT+TGG 0.575246 6_4:-72017529 Msa0995580:CDS
CTTGCGACACAAGTCAAACA+AGG 0.575460 6_4:-72019076 Msa0995580:CDS
AAGCTTACATGAGTGAGGCC+AGG 0.576657 6_4:-72017627 Msa0995580:CDS
TAAGAAGTCGTAGCCAACAC+CGG 0.589439 6_4:+72017535 None:intergenic
AAGAAGTCGTAGCCAACACC+GGG 0.590372 6_4:+72017536 None:intergenic
ACCAAAGATTCTGAAGCATA+CGG 0.593001 6_4:+72020737 None:intergenic
ATTGGGTTGCAATTGACTCA+AGG 0.594526 6_4:+72019110 None:intergenic
AACACATCAACAATATCAAG+TGG 0.595383 6_4:-72017562 Msa0995580:CDS
ACATTGATCATAGATGTTGA+GGG 0.599537 6_4:-72019217 Msa0995580:CDS
GACGACACGTATGATGCATA+CGG 0.603543 6_4:-72018636 Msa0995580:CDS
TTTCCACCCTAGCGTTTGGG+GGG 0.604138 6_4:-72020771 Msa0995580:CDS
TAATGAAATTCTACTTACGT+TGG 0.604203 6_4:-72018972 Msa0995580:CDS
AACCAATTCAAGGACAAGCA+AGG 0.604565 6_4:-72019253 Msa0995580:CDS
TCTTCATAAACATCCAAGAG+TGG 0.606426 6_4:+72018261 None:intergenic
CTTTATATATAGGTGGTGGA+AGG 0.614852 6_4:-72018802 Msa0995580:intron
ATTTCCACCCTAGCGTTTGG+GGG 0.619288 6_4:-72020772 Msa0995580:CDS
AAACCTCAATAAAACGCGAA+AGG 0.623927 6_4:+72016948 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 6_4:-72017023 Msa0995580:CDS
ACCATGAATCATCATATGTG+AGG 0.641340 6_4:+72019174 None:intergenic
ATAGTTAACATTCAACCACC+TGG 0.654774 6_4:+72017609 None:intergenic
AGTCCAAGCTTACATGAGTG+AGG 0.665674 6_4:-72017632 Msa0995580:CDS
GATAACTACACACATTCCGA+AGG 0.666041 6_4:-72016911 Msa0995580:CDS
CTTACATGAGTGAGGCCAGG+TGG 0.678940 6_4:-72017624 Msa0995580:CDS
TAACTATATACCAACAACAG+AGG 0.706002 6_4:-72017593 Msa0995580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAATATATATATTACA+AGG + chr6_4:72017345-72017364 None:intergenic 10.0%
!!! TAATTTTTTAATTTTGATCA+TGG - chr6_4:72017902-72017921 Msa0995580:intron 10.0%
!!! AATTTTTTAATTTTGATCAT+GGG - chr6_4:72017903-72017922 Msa0995580:intron 10.0%
!!! TAATTGTTTTTACATAAAAT+AGG - chr6_4:72018063-72018082 Msa0995580:intron 10.0%
!!! TTATAATGAAAATGAATTTT+AGG - chr6_4:72019354-72019373 Msa0995580:intron 10.0%
!! ATATTTATGAAAAGTGATTA+AGG - chr6_4:72017046-72017065 Msa0995580:CDS 15.0%
!! GAATCATTAATATAAATAAG+TGG + chr6_4:72017769-72017788 None:intergenic 15.0%
!!! ATTTTTTAATTTTGATCATG+GGG - chr6_4:72017904-72017923 Msa0995580:intron 15.0%
!!! TAATATAAACCTCTAAAAAA+TGG - chr6_4:72017933-72017952 Msa0995580:intron 15.0%
!!! TTTTGTTACTAAAAATGTAA+AGG + chr6_4:72017971-72017990 None:intergenic 15.0%
!! TGATTATGAAGTAATATTAA+CGG - chr6_4:72018214-72018233 Msa0995580:CDS 15.0%
!! ATAAAGACCAAAAATATTAT+AGG + chr6_4:72018876-72018895 None:intergenic 15.0%
!!! TATTTTTGGTCTTTATATAT+AGG - chr6_4:72018880-72018899 Msa0995580:intron 15.0%
!!! ATTAAATAATAACTTTTAGG+TGG - chr6_4:72019236-72019255 Msa0995580:CDS 15.0%
!! TCTTATCATATATTTATACA+CGG - chr6_4:72019297-72019316 Msa0995580:intron 15.0%
!!! TTGTGATTAGAATATTTTTA+AGG - chr6_4:72019678-72019697 Msa0995580:intron 15.0%
!!! TGTGATTAGAATATTTTTAA+GGG - chr6_4:72019679-72019698 Msa0995580:intron 15.0%
!! TTGAACAAAAGATTATATAT+TGG - chr6_4:72019895-72019914 Msa0995580:intron 15.0%
!! CATATTTACAAAAAATACAT+AGG - chr6_4:72019973-72019992 Msa0995580:CDS 15.0%
!! AATATAGTAGTATTGTTAAT+AGG + chr6_4:72020014-72020033 None:intergenic 15.0%
!! TTTAGATAAAAAAAAATACC+TGG + chr6_4:72020297-72020316 None:intergenic 15.0%
!! TATTATATTAACTCTTAAGA+CGG + chr6_4:72020439-72020458 None:intergenic 15.0%
!! AATATAATAAGATGACATAA+TGG - chr6_4:72020450-72020469 Msa0995580:intron 15.0%
!! GTTCACGTAAAAAAAAAAAA+GGG + chr6_4:72016993-72017012 None:intergenic 20.0%
!! TGTTCACGTAAAAAAAAAAA+AGG + chr6_4:72016994-72017013 None:intergenic 20.0%
!!! ACACTTAATTGTTATTTGAA+AGG + chr6_4:72017405-72017424 None:intergenic 20.0%
!! GGAATTTGATATAAATATTG+CGG - chr6_4:72017473-72017492 Msa0995580:CDS 20.0%
!! GCAAATTGATAAACTAAAAA+AGG - chr6_4:72017497-72017516 Msa0995580:CDS 20.0%
!! AATTGATAAACTAAAAAAGG+AGG - chr6_4:72017500-72017519 Msa0995580:CDS 20.0%
!!! AAAGTATTAATTTGACGATT+AGG + chr6_4:72017871-72017890 None:intergenic 20.0%
!!! TGTTTTTACATAAAATAGGA+AGG - chr6_4:72018067-72018086 Msa0995580:intron 20.0%
!!! CTAATTGCCTATAATATTTT+TGG - chr6_4:72018866-72018885 Msa0995580:intron 20.0%
!!! GTTTTTCTTTCTCTAAATTT+TGG + chr6_4:72019171-72019190 None:intergenic 20.0%
!!! TAATGAAAATGAATTTTAGG+TGG - chr6_4:72019357-72019376 Msa0995580:intron 20.0%
!!! AATGAAAATGAATTTTAGGT+GGG - chr6_4:72019358-72019377 Msa0995580:intron 20.0%
!!! TGTTATCAGAATGAAATTTT+AGG - chr6_4:72019606-72019625 Msa0995580:intron 20.0%
!!! TTTTGTTGAACTATTATCTA+CGG + chr6_4:72019933-72019952 None:intergenic 20.0%
!! TACAAATGATATCTTCAATT+GGG - chr6_4:72020201-72020220 Msa0995580:CDS 20.0%
!!! ATTGTTCATTTTTGTAAACA+AGG - chr6_4:72020366-72020385 Msa0995580:intron 20.0%
! GCAATGTTAGTAATATTAAG+TGG + chr6_4:72017289-72017308 None:intergenic 25.0%
! TTCAAGAATGCCAATAATAT+AGG - chr6_4:72017360-72017379 Msa0995580:intron 25.0%
! GTCAAAAGATCCTATATTAT+TGG + chr6_4:72017373-72017392 None:intergenic 25.0%
!!! TTCATGTTTTGATTACATAC+AGG - chr6_4:72017452-72017471 Msa0995580:CDS 25.0%
!!! ATCAAGTTGACTTTTTTCAA+CGG + chr6_4:72017558-72017577 None:intergenic 25.0%
!! AGACGAAATTAATCAAGTTT+TGG - chr6_4:72017617-72017636 Msa0995580:CDS 25.0%
!!! ATACTCAAACCATTTTTTAG+AGG + chr6_4:72017945-72017964 None:intergenic 25.0%
! TGAAGTAATCTTTATGGTTT+AGG - chr6_4:72018237-72018256 Msa0995580:CDS 25.0%
! CGTAAGTAGAATTTCATTAT+GGG + chr6_4:72018719-72018738 None:intergenic 25.0%
! ACGTAAGTAGAATTTCATTA+TGG + chr6_4:72018720-72018739 None:intergenic 25.0%
! TAATGAAATTCTACTTACGT+TGG - chr6_4:72018720-72018739 Msa0995580:CDS 25.0%
!! ATTTTAAATTAAGGAGAGTG+TGG + chr6_4:72018820-72018839 None:intergenic 25.0%
!!! TTTTGGTCTTTATATATAGG+TGG - chr6_4:72018883-72018902 Msa0995580:intron 25.0%
!! TGAGTTAGAACTTTTTACTA+AGG - chr6_4:72019088-72019107 Msa0995580:CDS 25.0%
!! TTTTTACTAAGGCAATTGAA+AGG - chr6_4:72019099-72019118 Msa0995580:CDS 25.0%
!! GTCTAATTTTGTCAACAAAA+GGG - chr6_4:72019319-72019338 Msa0995580:intron 25.0%
!!! CTATATTTTTGAACTGTCAT+TGG + chr6_4:72020042-72020061 None:intergenic 25.0%
! CTACAAATGATATCTTCAAT+TGG - chr6_4:72020200-72020219 Msa0995580:CDS 25.0%
! ATTTCACACAATATTCTTTG+TGG - chr6_4:72020323-72020342 Msa0995580:intron 25.0%
! ATACTTGGAATGTTATATGA+GGG - chr6_4:72020591-72020610 Msa0995580:intron 25.0%
! TTATATGAGGGAATATGATA+TGG - chr6_4:72020603-72020622 Msa0995580:intron 25.0%
!!! AAGCATTGTCAATTTTCTTT+TGG + chr6_4:72020654-72020673 None:intergenic 25.0%
! AAAAGAAAATTGACAATGCT+TGG - chr6_4:72020653-72020672 Msa0995580:intron 25.0%
! ATATAAATGAGGAATGTCTT+AGG - chr6_4:72020680-72020699 Msa0995580:intron 25.0%
GAATAAAACCACGAGAAAAT+AGG - chr6_4:72017106-72017125 Msa0995580:CDS 30.0%
! GTTGGTTATTTGTTAGCAAT+AGG - chr6_4:72017155-72017174 Msa0995580:intron 30.0%
! TAGGATTTCCAACATTTTTG+AGG - chr6_4:72017195-72017214 Msa0995580:intron 30.0%
! AGGATTTCCAACATTTTTGA+GGG - chr6_4:72017196-72017215 Msa0995580:intron 30.0%
GCAATGTGTAATATCTATGT+TGG + chr6_4:72017232-72017251 None:intergenic 30.0%
TTAATTATACGATCCAAGTG+TGG + chr6_4:72017262-72017281 None:intergenic 30.0%
! ATTGACTCAATATGTCGTTT+GGG - chr6_4:72017576-72017595 Msa0995580:CDS 30.0%
! CATTTTGAACAAAATCCTTG+TGG + chr6_4:72017650-72017669 None:intergenic 30.0%
! CACAAGGATTTTGTTCAAAA+TGG - chr6_4:72017648-72017667 Msa0995580:intron 30.0%
AATGGAGAAATAACTCTCAA+AGG - chr6_4:72017666-72017685 Msa0995580:intron 30.0%
!! ATTCTATTGCTGTGCTATTT+AGG - chr6_4:72017697-72017716 Msa0995580:intron 30.0%
!! TTCTATTGCTGTGCTATTTA+GGG - chr6_4:72017698-72017717 Msa0995580:intron 30.0%
TAAGTGGAGATATAAATACC+AGG + chr6_4:72017753-72017772 None:intergenic 30.0%
TTGAGTAAAACAAACTTGTG+TGG - chr6_4:72017817-72017836 Msa0995580:intron 30.0%
!! GGATAATGGGTTGTTTAATA+TGG + chr6_4:72018111-72018130 None:intergenic 30.0%
TAACGGTGAAGTAATCTTTA+TGG - chr6_4:72018231-72018250 Msa0995580:CDS 30.0%
!! GTGTTTCTAGAGTATGAAAA+GGG + chr6_4:72018302-72018321 None:intergenic 30.0%
!! TGTGTTTCTAGAGTATGAAA+AGG + chr6_4:72018303-72018322 None:intergenic 30.0%
ATGATTGTTCAACATTGTCA+TGG - chr6_4:72018388-72018407 Msa0995580:intron 30.0%
AGATGTATTCAACCAATTCA+AGG - chr6_4:72018429-72018448 Msa0995580:intron 30.0%
AACATTGATCATAGATGTTG+AGG - chr6_4:72018474-72018493 Msa0995580:intron 30.0%
ACATTGATCATAGATGTTGA+GGG - chr6_4:72018475-72018494 Msa0995580:intron 30.0%
! GATTCATGGTGAGAAAATTT+TGG - chr6_4:72018531-72018550 Msa0995580:intron 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6_4:72018774-72018793 None:intergenic 30.0%
ATTTGGAAACATTTGCAAGT+AGG - chr6_4:72018786-72018805 Msa0995580:CDS 30.0%
CTAAAAAACTACCTTATGCA+CGG - chr6_4:72018925-72018944 Msa0995580:CDS 30.0%
TAAAAAACTACCTTATGCAC+GGG - chr6_4:72018926-72018945 Msa0995580:CDS 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6_4:72018953-72018972 Msa0995580:CDS 30.0%
GTCGTCAATGTATGATAAAA+TGG + chr6_4:72019042-72019061 None:intergenic 30.0%
! GGTCTAATTTTGTCAACAAA+AGG - chr6_4:72019318-72019337 Msa0995580:intron 30.0%
TAGAGAAACTTCATGTAATC+CGG + chr6_4:72019407-72019426 None:intergenic 30.0%
!! TTCTTTTAAGAAGTGGTCAA+TGG + chr6_4:72019495-72019514 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+TGG + chr6_4:72019502-72019521 None:intergenic 30.0%
CTATGTATCTATACGAAGAA+TGG + chr6_4:72019645-72019664 None:intergenic 30.0%
TTCTAATCACAAGATATGCT+AGG + chr6_4:72019670-72019689 None:intergenic 30.0%
CAAAAAATACATAGGAGTTC+AGG - chr6_4:72019981-72020000 Msa0995580:CDS 30.0%
TAACTATATACCAACAACAG+AGG - chr6_4:72020099-72020118 Msa0995580:CDS 30.0%
AACACATCAACAATATCAAG+TGG - chr6_4:72020130-72020149 Msa0995580:CDS 30.0%
!! GTTCATTTTTGTAAACAAGG+TGG - chr6_4:72020369-72020388 Msa0995580:intron 30.0%
CATACTTGGAATGTTATATG+AGG - chr6_4:72020590-72020609 Msa0995580:intron 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG + chr6_4:72020641-72020660 None:intergenic 30.0%
TGCTTGGAAAGATATAAATG+AGG - chr6_4:72020669-72020688 Msa0995580:intron 30.0%
! AAACGTAATGGAACTTTAGT+TGG + chr6_4:72020706-72020725 None:intergenic 30.0%
!! ACCAAAGATTCTGAAGCATA+CGG + chr6_4:72016958-72016977 None:intergenic 35.0%
CTAACAAATAACCAACCCTT+TGG + chr6_4:72017151-72017170 None:intergenic 35.0%
TTAGCAATAGGAATGAAACC+TGG - chr6_4:72017167-72017186 Msa0995580:intron 35.0%
!! TCCAACATTTTTGAGGGAAA+AGG - chr6_4:72017202-72017221 Msa0995580:intron 35.0%
! TCCTTTTCCCTCAAAAATGT+TGG + chr6_4:72017206-72017225 None:intergenic 35.0%
! GATTGACTCAATATGTCGTT+TGG - chr6_4:72017575-72017594 Msa0995580:CDS 35.0%
!!! AGTTTTGGAAGATATCCACA+AGG - chr6_4:72017632-72017651 Msa0995580:CDS 35.0%
ATAGCACAGCAATAGAATGA+AGG + chr6_4:72017695-72017714 None:intergenic 35.0%
AAAATAGGAAGGATCATCGT+AGG - chr6_4:72018078-72018097 Msa0995580:intron 35.0%
CTGAACATTACACGGATAAT+GGG + chr6_4:72018124-72018143 None:intergenic 35.0%
TCTGAACATTACACGGATAA+TGG + chr6_4:72018125-72018144 None:intergenic 35.0%
GTAATCTTTATGGTTTAGGC+CGG - chr6_4:72018241-72018260 Msa0995580:CDS 35.0%
AAATAAGATGGCTACCCTAT+AGG + chr6_4:72018271-72018290 None:intergenic 35.0%
! ATAGGGTAGCCATCTTATTT+AGG - chr6_4:72018271-72018290 Msa0995580:CDS 35.0%
AGGGTTCTTCCTAAATAAGA+TGG + chr6_4:72018283-72018302 None:intergenic 35.0%
ACCATGAATCATCATATGTG+AGG + chr6_4:72018521-72018540 None:intergenic 35.0%
!! TGGTGAGAAAATTTTGGAAG+AGG - chr6_4:72018537-72018556 Msa0995580:intron 35.0%
TCTACTTACGTTGGCAAAAT+TGG - chr6_4:72018729-72018748 Msa0995580:CDS 35.0%
! ATTCCTTTTGATGTAGGCTT+TGG + chr6_4:72018768-72018787 None:intergenic 35.0%
AGCCTACATCAAAAGGAATT+TGG - chr6_4:72018769-72018788 Msa0995580:CDS 35.0%
TGGTCTTTATATATAGGTGG+TGG - chr6_4:72018886-72018905 Msa0995580:intron 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6_4:72018890-72018909 Msa0995580:intron 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6_4:72018952-72018971 Msa0995580:CDS 35.0%
!!! ATGTTGCTTTTGGGTTATGA+CGG - chr6_4:72018962-72018981 Msa0995580:CDS 35.0%
TTCCTTGCTTGACAATATTG+AGG + chr6_4:72018999-72019018 None:intergenic 35.0%
TTGTCAAGCAAGGAAAATGA+TGG - chr6_4:72019004-72019023 Msa0995580:CDS 35.0%
TAGGTGGGATATTAGTTGTT+TGG - chr6_4:72019373-72019392 Msa0995580:intron 35.0%
TAGTTGTTTGGATGATCTTC+CGG - chr6_4:72019385-72019404 Msa0995580:intron 35.0%
GTTTCTCTATAAACCACTCT+TGG - chr6_4:72019418-72019437 Msa0995580:intron 35.0%
TCTTCATAAACATCCAAGAG+TGG + chr6_4:72019434-72019453 None:intergenic 35.0%
ATAGTTAACATTCAACCACC+TGG + chr6_4:72020086-72020105 None:intergenic 35.0%
AACAATATCAAGTGGTTACC+CGG - chr6_4:72020138-72020157 Msa0995580:CDS 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_4:72020168-72020187 Msa0995580:CDS 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_4:72020169-72020188 Msa0995580:CDS 35.0%
! GCAGCAGCATTAACAATTTT+CGG + chr6_4:72020238-72020257 None:intergenic 35.0%
AAACAGTTCGAGCAAAAAAG+AGG - chr6_4:72020556-72020575 Msa0995580:intron 35.0%
ACACACGTCAAAAAACGTAA+TGG + chr6_4:72020718-72020737 None:intergenic 35.0%
AAACCTCAATAAAACGCGAA+AGG + chr6_4:72020747-72020766 None:intergenic 35.0%
GACGAGCAAATCATTAATGT+AGG + chr6_4:72020818-72020837 None:intergenic 35.0%
TCCGTATGCTTCAGAATCTT+TGG - chr6_4:72016954-72016973 Msa0995580:CDS 40.0%
!! TAGCTCTACCTATTTTCTCG+TGG + chr6_4:72017117-72017136 None:intergenic 40.0%
AGCTATAGCAAACACTCCAA+AGG - chr6_4:72017132-72017151 Msa0995580:CDS 40.0%
GCTATAGCAAACACTCCAAA+GGG - chr6_4:72017133-72017152 Msa0995580:CDS 40.0%
! GGAATGAAACCTGGTGTTTT+AGG - chr6_4:72017176-72017195 Msa0995580:intron 40.0%
GTTGGAAATCCTAAAACACC+AGG + chr6_4:72017188-72017207 None:intergenic 40.0%
TTATACGATCCAAGTGTGGT+TGG + chr6_4:72017258-72017277 None:intergenic 40.0%
ACTAACATTGCACACTCCAA+AGG - chr6_4:72017298-72017317 Msa0995580:intron 40.0%
CTAACATTGCACACTCCAAA+GGG - chr6_4:72017299-72017318 Msa0995580:intron 40.0%
GTGAGTAACTTGAATCCCTT+TGG + chr6_4:72017317-72017336 None:intergenic 40.0%
GCGAATAATGTAAAGAACCG+AGG + chr6_4:72018149-72018168 None:intergenic 40.0%
! TTTAGGCCGGTTTACCTATA+GGG - chr6_4:72018254-72018273 Msa0995580:CDS 40.0%
AACCAATTCAAGGACAAGCA+AGG - chr6_4:72018439-72018458 Msa0995580:intron 40.0%
TTCCTTGCTTGTCCTTGAAT+TGG + chr6_4:72018444-72018463 None:intergenic 40.0%
GCCTCACATATGATGATTCA+TGG - chr6_4:72018517-72018536 Msa0995580:intron 40.0%
!!! GAGGCATTGACTTTTACTTC+TGG - chr6_4:72018556-72018575 Msa0995580:intron 40.0%
! ATTGGGTTGCAATTGACTCA+AGG + chr6_4:72018585-72018604 None:intergenic 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6_4:72018698-72018717 None:intergenic 40.0%
AGCCTCAATATTGTCAAGCA+AGG - chr6_4:72018994-72019013 Msa0995580:CDS 40.0%
GAGCATGAAGTGAAGAAAGA+AGG - chr6_4:72019458-72019477 Msa0995580:intron 40.0%
TTCATGTACTCCTCTGTTGT+TGG + chr6_4:72020112-72020131 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_4:72020163-72020182 Msa0995580:CDS 40.0%
! AGGACATGTTGCTTCATACT+TGG - chr6_4:72020576-72020595 Msa0995580:intron 40.0%
!! CAACCTTTCGCGTTTTATTG+AGG - chr6_4:72020741-72020760 Msa0995580:CDS 40.0%
GATAACTACACACATTCCGA+AGG - chr6_4:72020781-72020800 Msa0995580:CDS 40.0%
GTAGGTCTTCATTAGTCCTT+CGG + chr6_4:72020800-72020819 None:intergenic 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6_4:72016918-72016937 Msa0995580:CDS 45.0%
TAGCAAACACTCCAAAGGGT+TGG - chr6_4:72017137-72017156 Msa0995580:intron 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6_4:72017706-72017725 Msa0995580:intron 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6_4:72017714-72017733 Msa0995580:intron 45.0%
CATGGTCTTTACGTTTCACC+TGG - chr6_4:72017732-72017751 Msa0995580:intron 45.0%
AGGAAGGATCATCGTAGGAT+CGG - chr6_4:72018083-72018102 Msa0995580:intron 45.0%
CCGAGGATCTGAACATTACA+CGG + chr6_4:72018132-72018151 None:intergenic 45.0%
CCGTGTAATGTTCAGATCCT+CGG - chr6_4:72018129-72018148 Msa0995580:intron 45.0%
! GTTTAGGCCGGTTTACCTAT+AGG - chr6_4:72018253-72018272 Msa0995580:CDS 45.0%
TGGCTACCCTATAGGTAAAC+CGG + chr6_4:72018263-72018282 None:intergenic 45.0%
CGCAAGAGAAGGACTCAATT+GGG + chr6_4:72018602-72018621 None:intergenic 45.0%
TCGCAAGAGAAGGACTCAAT+TGG + chr6_4:72018603-72018622 None:intergenic 45.0%
!! TTGACTTGTGTCGCAAGAGA+AGG + chr6_4:72018613-72018632 None:intergenic 45.0%
CTTGCGACACAAGTCAAACA+AGG - chr6_4:72018616-72018635 Msa0995580:CDS 45.0%
CAAAAACTTGCCTAGGCTAG+AGG - chr6_4:72018657-72018676 Msa0995580:CDS 45.0%
GCTCCAAAGCCTACATCAAA+AGG - chr6_4:72018762-72018781 Msa0995580:CDS 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6_4:72018896-72018915 Msa0995580:intron 45.0%
GACGACACGTATGATGCATA+CGG - chr6_4:72019056-72019075 Msa0995580:CDS 45.0%
AGTCCAAGCTTACATGAGTG+AGG - chr6_4:72020060-72020079 Msa0995580:CDS 45.0%
TAAGAAGTCGTAGCCAACAC+CGG + chr6_4:72020160-72020179 None:intergenic 45.0%
TGCTGTTCATTGCAGGCTTA+GGG - chr6_4:72020255-72020274 Msa0995580:intron 45.0%
GGATGAAATTGTGTCTAGCC+AGG - chr6_4:72020276-72020295 Msa0995580:intron 45.0%
!!! TCATTTTTTATATTTTAATT+TGG - chr6_4:72017787-72017806 Msa0995580:intron 5.0%
!!! TTCAATTTAATTTTAAATTA+AGG + chr6_4:72018829-72018848 None:intergenic 5.0%
!!! AAAATTAAATAATAACTTTT+AGG - chr6_4:72019233-72019252 Msa0995580:CDS 5.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6_4:72016917-72016936 Msa0995580:CDS 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6_4:72016919-72016938 Msa0995580:CDS 50.0%
ATTTCCACCCTAGCGTTTGG+GGG - chr6_4:72016920-72016939 Msa0995580:CDS 50.0%
CATTGCACACCAACCACACT+TGG - chr6_4:72017246-72017265 Msa0995580:intron 50.0%
! CTAGGCAAGTTTTTGCGCAG+AGG + chr6_4:72018652-72018671 None:intergenic 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6_4:72018650-72018669 Msa0995580:CDS 50.0%
TAGCTTCTTGCCTCTAGCCT+AGG + chr6_4:72018670-72018689 None:intergenic 50.0%
ACTACTCTGTCCCGTGCATA+AGG + chr6_4:72018939-72018958 None:intergenic 50.0%
TGGCCTCACTCATGTAAGCT+TGG + chr6_4:72020066-72020085 None:intergenic 50.0%
AAGCTTACATGAGTGAGGCC+AGG - chr6_4:72020065-72020084 Msa0995580:CDS 50.0%
ATCAAGTGGTTACCCGGTGT+TGG - chr6_4:72020144-72020163 Msa0995580:CDS 50.0%
AAGAAGTCGTAGCCAACACC+GGG + chr6_4:72020159-72020178 None:intergenic 50.0%
ATGCTGCTGCTGTTCATTGC+AGG - chr6_4:72020248-72020267 Msa0995580:intron 50.0%
CTGCTGTTCATTGCAGGCTT+AGG - chr6_4:72020254-72020273 Msa0995580:intron 50.0%
TTTCCACCCTAGCGTTTGGG+GGG - chr6_4:72016921-72016940 Msa0995580:CDS 55.0%
AGAAGTCCCCCCAAACGCTA+GGG + chr6_4:72016930-72016949 None:intergenic 55.0%
AAGAAGTCCCCCCAAACGCT+AGG + chr6_4:72016931-72016950 None:intergenic 55.0%
CTTACATGAGTGAGGCCAGG+TGG - chr6_4:72020068-72020087 Msa0995580:CDS 55.0%
AGTCCCCCCAAACGCTAGGG+TGG + chr6_4:72016927-72016946 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 72016859 72020855 72016859 ID=Msa0995580;Name=Msa0995580
chr6_4 mRNA 72016859 72020855 72016859 ID=Msa0995580-mRNA-1;Parent=Msa0995580;Name=Msa0995580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|7|0|556
chr6_4 exon 72020739 72020855 72020739 ID=Msa0995580-mRNA-1:exon:13461;Parent=Msa0995580-mRNA-1
chr6_4 exon 72019961 72020240 72019961 ID=Msa0995580-mRNA-1:exon:13460;Parent=Msa0995580-mRNA-1
chr6_4 exon 72018911 72019283 72018911 ID=Msa0995580-mRNA-1:exon:13459;Parent=Msa0995580-mRNA-1
chr6_4 exon 72018594 72018812 72018594 ID=Msa0995580-mRNA-1:exon:13458;Parent=Msa0995580-mRNA-1
chr6_4 exon 72018200 72018338 72018200 ID=Msa0995580-mRNA-1:exon:13457;Parent=Msa0995580-mRNA-1
chr6_4 exon 72017417 72017665 72017417 ID=Msa0995580-mRNA-1:exon:13456;Parent=Msa0995580-mRNA-1
chr6_4 exon 72016859 72017152 72016859 ID=Msa0995580-mRNA-1:exon:13455;Parent=Msa0995580-mRNA-1
chr6_4 CDS 72020739 72020855 72020739 ID=Msa0995580-mRNA-1:cds;Parent=Msa0995580-mRNA-1
chr6_4 CDS 72019961 72020240 72019961 ID=Msa0995580-mRNA-1:cds;Parent=Msa0995580-mRNA-1
chr6_4 CDS 72018911 72019283 72018911 ID=Msa0995580-mRNA-1:cds;Parent=Msa0995580-mRNA-1
chr6_4 CDS 72018594 72018812 72018594 ID=Msa0995580-mRNA-1:cds;Parent=Msa0995580-mRNA-1
chr6_4 CDS 72018200 72018338 72018200 ID=Msa0995580-mRNA-1:cds;Parent=Msa0995580-mRNA-1
chr6_4 CDS 72017417 72017665 72017417 ID=Msa0995580-mRNA-1:cds;Parent=Msa0995580-mRNA-1
chr6_4 CDS 72016859 72017152 72016859 ID=Msa0995580-mRNA-1:cds;Parent=Msa0995580-mRNA-1
Gene Sequence

>Msa0995580

ATGTCTGCAGTAGCTAGCTTCAATAATAACGAGAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGAATTTGATATAAATATTGCGGCGCAAATTGATAAACTAAAAAAGGAGGTTAGACAGATGCTTGTCTCAAAAATTGAGAATCCGTTGAAAAAAGTCAACTTGATTGACTCAATATGTCGTTTGGGTGTGAGCTATTATTTTGAAGACGAAATTAATCAAGTTTTGGAAGATATCCACAAGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGCAACCTTCATTCTATTGCTGTGCTATTTAGGGTGTTGAGGCAACATGGTCTTTACGTTTCACCTGATGTATTCAACCAATTCAAGGACAAGCAAGGAAATTTTAGTGAAACATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGATTCATGGTGAGAAAATTTTGGAAGAGGCATTGACTTTTACTTCTGGTCACCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGACACAAGTCAAACAAGGCTTAAGACATCCTCTGCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAGGAATTTGGAAACATTTGCAAGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAATGATGGCAAAAGTAATCTCCATTTTATCATACATTGACGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGCAATTGAAAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATAGAGCATGAAGTGAAGAAAGAAGGAAGATTATACGCCATTGACCACTTCTTAAAAGAATTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAACTATATACCAACAACAGAGGAGTACATGAACACATCAACAATATCAAGTGGTTACCCGGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCTACAAATGATATCTTCAATTGGGTAACTAACAATCCGAAAATTGTTAATGCTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCCAGTTCGAGCAAAAAAGAGGACATGTTGCTTCATACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTACGTTTTTTGACGTGTGTTCTCAACCTTTCGCGTTTTATTGAGGTTTTTTACAAAGATGAAGATAACTACACACATTCCGAAGGACTAATGAAGACCTACATTAATGATTTGCTCGTCAATCCCATCCCAACATGA
Protein sequence

>Msa0995580

MSAVASFNNNEKSVLQRNVADFHPSVWGDFFIPYASESLEFDINIAAQIDKLKKEVRQMLVSKIENPLKKVNLIDSICRLGVSYYFEDEINQVLEDIHKDFVQNGEITLKGNLHSIAVLFRVLRQHGLYVSPDVFNQFKDKQGNFSETLIIDVEGMLNLYEASHMMIHGEKILEEALTFTSGHLESIATQLSPSLATQVKQGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQSLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKMMAKVISILSYIDDTYDAYGTIDELELFTKAIERWDISCLDDLPDYMKFLYKPLLDVYEEIEHEVKKEGRLYAIDHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPVLATTSYIGMGNIATNDIFNWVTNNPKIVNAAAVHCRLRDEIVSSQFEQKRGHVASYLECYMREYDMDREAAIQECQKKIDNAWKDINEECLRPTKVPLRFLTCVLNLSRFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT*