AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0959240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959240 MtrunA17_Chr6g0465441 68.670 549 172 0 1 549 4 552 0.0 811
Msa0959240 MtrunA17_Chr7g0236991 68.488 549 173 0 1 549 4 552 0.0 811
Msa0959240 MtrunA17_Chr7g0237001 68.306 549 174 0 1 549 4 552 0.0 810
Msa0959240 MtrunA17_Chr7g0237041 68.306 549 174 0 1 549 4 552 0.0 810
Msa0959240 MtrunA17_Chr7g0237081 68.306 549 174 0 1 549 4 552 0.0 810
Msa0959240 MtrunA17_Chr7g0237051 68.306 549 174 0 1 549 4 552 0.0 810
Msa0959240 MtrunA17_Chr5g0425371 70.556 540 159 0 10 549 13 552 0.0 804
Msa0959240 MtrunA17_Chr6g0465911 68.306 549 174 0 1 549 4 552 0.0 798
Msa0959240 MtrunA17_Chr6g0466051 68.124 549 175 0 1 549 4 552 0.0 796
Msa0959240 MtrunA17_Chr4g0024691 69.301 544 167 0 6 549 17 560 0.0 794
Msa0959240 MtrunA17_Chr6g0451711 67.395 549 178 1 2 549 8 556 0.0 793
Msa0959240 MtrunA17_Chr3g0105071 66.849 549 181 1 1 548 7 555 0.0 777
Msa0959240 MtrunA17_Chr6g0465851 69.246 517 159 0 33 549 1 517 0.0 757
Msa0959240 MtrunA17_Chr3g0082691 65.217 552 189 2 1 549 1 552 0.0 757
Msa0959240 MtrunA17_Chr5g0431571 66.176 544 183 1 6 548 4 547 0.0 746
Msa0959240 MtrunA17_Chr5g0431651 64.610 551 193 2 1 549 1 551 0.0 744
Msa0959240 MtrunA17_Chr7g0236961 69.618 497 151 0 53 549 1 497 0.0 744
Msa0959240 MtrunA17_Chr7g0237011 69.618 497 151 0 53 549 1 497 0.0 744
Msa0959240 MtrunA17_Chr4g0042111 58.212 548 226 2 4 549 15 561 0.0 668
Msa0959240 MtrunA17_Chr7g0236971 69.500 400 122 0 150 549 1 400 0.0 604
Msa0959240 MtrunA17_Chr6g0465981 68.919 370 115 0 1 370 4 373 0.0 545
Msa0959240 MtrunA17_Chr6g0465871 68.919 370 115 0 1 370 4 373 0.0 545
Msa0959240 MtrunA17_Chr6g0466081 68.919 370 115 0 1 370 4 373 0.0 545
Msa0959240 MtrunA17_Chr6g0466111 70.414 338 100 0 33 370 1 338 4.96e-177 502
Msa0959240 MtrunA17_Chr6g0465931 70.118 338 101 0 33 370 1 338 5.23e-176 500
Msa0959240 MtrunA17_Chr2g0319041 45.055 546 292 7 9 548 12 555 2.26e-173 501
Msa0959240 MtrunA17_Chr8g0336181 45.803 548 289 6 7 548 9 554 1.72e-170 494
Msa0959240 MtrunA17_Chr7g0236951 70.794 315 92 0 53 367 1 315 7.06e-169 481
Msa0959240 MtrunA17_Chr7g0237031 70.794 315 92 0 53 367 1 315 2.13e-168 479
Msa0959240 MtrunA17_Chr2g0319051 45.205 511 274 6 42 548 4 512 1.22e-163 475
Msa0959240 MtrunA17_Chr4g0008621 45.500 400 214 4 9 404 19 418 5.48e-124 371
Msa0959240 MtrunA17_Chr6g0466031 65.637 259 89 0 291 549 1 259 8.95e-122 358
Msa0959240 MtrunA17_Chr5g0445511 67.782 239 77 0 145 383 1 239 4.32e-119 351
Msa0959240 MtrunA17_Chr2g0319071 37.718 517 272 10 38 550 19 489 2.13e-115 351
Msa0959240 MtrunA17_Chr4g0023911 34.615 546 346 4 7 548 41 579 3.57e-114 350
Msa0959240 MtrunA17_Chr2g0323131 36.117 515 306 9 43 550 67 565 1.93e-108 335
Msa0959240 MtrunA17_Chr7g0237061 61.004 259 78 2 291 549 1 236 6.02e-108 322
Msa0959240 MtrunA17_Chr2g0310331 36.464 543 331 9 11 549 53 585 1.20e-107 334
Msa0959240 MtrunA17_Chr2g0323151 35.583 489 298 5 65 549 4 479 8.78e-105 323
Msa0959240 MtrunA17_Chr8g0357411 33.575 551 357 5 1 549 45 588 7.16e-98 308
Msa0959240 MtrunA17_Chr7g0237071 69.307 202 62 0 53 254 1 202 8.11e-95 288
Msa0959240 MtrunA17_Chr6g0466021 66.162 198 67 0 1 198 4 201 2.41e-91 278
Msa0959240 MtrunA17_Chr4g0048921 32.233 515 336 6 38 548 64 569 2.61e-86 278
Msa0959240 MtrunA17_Chr4g0048911 30.952 546 365 9 2 542 18 556 2.12e-85 275
Msa0959240 MtrunA17_Chr7g0237021 68.421 171 54 0 379 549 1 171 7.63e-84 258
Msa0959240 MtrunA17_Chr7g0236941 68.421 171 54 0 379 549 1 171 7.63e-84 258
Msa0959240 MtrunA17_Chr6g0465941 66.667 171 57 0 379 549 1 171 1.95e-79 246
Msa0959240 MtrunA17_Chr6g0466121 66.667 171 57 0 379 549 1 171 1.95e-79 246
Msa0959240 MtrunA17_Chr6g0465991 66.667 171 57 0 379 549 1 171 1.95e-79 246
Msa0959240 MtrunA17_Chr6g0466091 66.667 171 57 0 379 549 1 171 1.95e-79 246
Msa0959240 MtrunA17_Chr6g0465881 66.082 171 58 0 379 549 1 171 1.17e-78 244
Msa0959240 MtrunA17_Chr2g0280581 29.658 526 341 10 36 541 2 518 6.22e-76 249
Msa0959240 MtrunA17_Chr2g0319081 40.123 324 175 7 228 548 118 425 2.20e-75 245
Msa0959240 MtrunA17_Chr2g0319081 40.164 122 72 1 9 129 19 140 7.93e-23 101
Msa0959240 MtrunA17_Chr2g0310401 32.944 428 284 2 124 549 5 431 1.67e-73 240
Msa0959240 MtrunA17_Chr5g0445501 61.404 171 66 0 379 549 1 171 1.01e-72 229
Msa0959240 MtrunA17_Chr3g0109001 29.980 497 322 9 48 528 13 499 5.37e-70 233
Msa0959240 MtrunA17_Chr7g0236921 64.331 157 52 1 397 549 1 157 8.65e-70 221
Msa0959240 MtrunA17_Chr3g0108941 29.240 513 335 10 48 544 13 513 1.52e-69 232
Msa0959240 MtrunA17_Chr3g0109021 29.724 508 331 9 36 528 2 498 1.81e-69 232
Msa0959240 MtrunA17_Chr3g0109031 29.084 502 342 8 36 528 2 498 6.41e-69 231
Msa0959240 MtrunA17_Chr6g0477111 30.146 481 312 8 67 532 6 477 1.05e-68 229
Msa0959240 MtrunA17_Chr3g0105691 29.283 502 341 7 36 528 35 531 5.50e-68 229
Msa0959240 MtrunA17_Chr3g0108991 29.331 508 333 9 36 528 2 498 2.04e-67 227
Msa0959240 MtrunA17_Chr3g0108951 29.331 508 333 9 36 528 2 498 2.04e-67 227
Msa0959240 MtrunA17_Chr3g0108981 29.560 477 313 6 67 528 6 474 2.51e-66 223
Msa0959240 MtrunA17_Chr3g0108961 29.560 477 313 6 67 528 6 474 2.51e-66 223
Msa0959240 MtrunA17_Chr7g0236931 62.745 153 54 1 397 549 1 150 1.55e-65 210
Msa0959240 MtrunA17_Chr3g0108971 29.769 477 311 8 67 528 6 473 3.52e-65 220
Msa0959240 MtrunA17_Chr3g0109011 29.560 477 312 8 67 528 6 473 5.35e-65 219
Msa0959240 MtrunA17_Chr3g0099031 29.412 510 337 9 48 544 13 512 4.04e-64 218
Msa0959240 MtrunA17_Chr6g0477121 29.024 410 280 6 127 528 10 416 6.14e-56 193
Msa0959240 MtrunA17_Chr7g0233861 63.704 135 40 1 190 324 33 158 2.18e-52 176
Msa0959240 MtrunA17_Chr7g0236981 60.465 129 51 0 1 129 4 132 7.83e-52 173
Msa0959240 MtrunA17_Chr7g0217361 33.667 300 198 1 249 547 8 307 3.15e-51 177
Msa0959240 MtrunA17_Chr8g0357221 37.143 245 145 4 3 245 47 284 7.30e-43 154
Msa0959240 MtrunA17_Chr5g0445401 72.632 95 22 2 160 251 1 94 1.07e-35 128
Msa0959240 MtrunA17_Chr8g0357231 30.116 259 179 2 292 549 1 258 1.38e-34 131
Msa0959240 MtrunA17_Chr2g0310121 24.225 516 349 15 64 548 275 779 8.51e-33 133
Msa0959240 MtrunA17_Chr5g0445521 66.265 83 28 0 6 88 12 94 8.92e-33 121
Msa0959240 MtrunA17_Chr3g0101681 25.430 523 334 17 64 548 276 780 1.43e-32 132
Msa0959240 MtrunA17_Chr3g0082711 48.696 115 42 1 435 549 1 98 2.30e-32 119
Msa0959240 MtrunA17_Chr7g0259881 28.996 269 161 7 67 307 232 498 3.57e-26 113
Msa0959240 MtrunA17_Chr7g0218001 30.741 270 153 7 67 304 349 616 1.24e-24 108
Msa0959240 MtrunA17_Chr7g0217351 29.493 217 144 5 40 252 62 273 6.86e-22 96.3
Msa0959240 MtrunA17_Chr2g0281651 26.087 276 195 6 227 499 43 312 3.98e-19 89.7
Msa0959240 MtrunA17_Chr7g0218041 31.667 240 137 7 114 328 3 240 2.52e-17 84.3
Msa0959240 MtrunA17_Chr5g0411111 38.889 126 62 5 114 228 3 124 5.23e-14 68.9
Msa0959240 MtrunA17_Chr2g0310411 32.000 125 75 4 2 125 49 164 1.01e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959240 AT5G23960.2 40.110 546 320 5 7 549 3 544 5.12e-151 444
Msa0959240 AT5G23960.1 40.146 548 319 6 7 549 3 546 5.68e-150 442
Msa0959240 AT1G70080.1 38.278 546 327 7 11 548 66 609 9.07e-127 384
Msa0959240 AT3G14490.1 37.912 546 327 7 11 549 60 600 7.07e-122 371
Msa0959240 AT3G14520.1 36.735 539 333 5 16 549 68 603 1.60e-121 370
Msa0959240 AT1G31950.1 36.111 540 335 5 16 549 70 605 3.54e-120 367
Msa0959240 AT3G14540.1 36.920 539 332 4 16 549 65 600 1.24e-119 365
Msa0959240 AT1G31950.3 36.044 541 335 6 16 549 70 606 1.27e-119 366
Msa0959240 AT5G44630.1 35.963 545 338 6 12 548 14 555 1.39e-114 351
Msa0959240 AT1G33750.1 34.831 534 342 4 18 549 73 602 2.46e-113 349
Msa0959240 AT3G32030.1 35.065 539 342 6 16 549 68 603 6.35e-113 348
Msa0959240 AT4G13300.1 36.872 537 328 7 19 548 20 552 1.09e-111 343
Msa0959240 AT3G29410.1 34.807 543 346 6 11 549 64 602 2.24e-111 344
Msa0959240 AT4G20210.1 34.799 546 343 7 11 548 58 598 1.02e-110 343
Msa0959240 AT4G15870.1 34.838 554 335 9 3 548 61 596 4.03e-108 336
Msa0959240 AT3G29190.1 34.766 535 323 9 32 549 75 600 6.23e-108 335
Msa0959240 AT4G20200.1 35.907 518 314 9 42 548 92 602 8.20e-108 335
Msa0959240 AT4G13280.2 36.075 535 331 7 21 548 22 552 1.89e-105 327
Msa0959240 AT3G29410.2 35.000 500 319 4 53 549 1 497 2.87e-105 325
Msa0959240 AT4G20230.1 33.641 541 337 9 19 546 70 601 2.12e-100 316
Msa0959240 AT4G20230.2 33.641 541 337 9 19 546 82 613 4.36e-100 315
Msa0959240 AT3G14540.2 37.444 446 272 3 16 457 65 507 4.63e-100 312
Msa0959240 AT1G31950.2 36.105 457 281 6 16 465 70 522 9.20e-100 312
Msa0959240 AT4G16730.1 31.608 541 353 7 22 549 2 538 1.45e-98 309
Msa0959240 AT3G29110.1 34.615 546 344 9 11 548 55 595 6.73e-98 309
Msa0959240 AT2G23230.2 33.700 546 347 9 10 545 55 595 4.62e-97 307
Msa0959240 AT1G66020.1 32.721 544 357 6 11 548 56 596 3.60e-95 302
Msa0959240 AT4G16730.2 32.121 495 321 5 67 549 1 492 6.52e-95 298
Msa0959240 AT2G23230.1 33.516 546 343 10 10 545 55 590 2.61e-94 300
Msa0959240 AT4G13280.1 34.953 535 307 9 21 548 22 522 2.89e-94 298
Msa0959240 AT1G48800.1 31.319 546 359 9 11 546 63 602 6.16e-92 294
Msa0959240 AT4G16740.1 31.532 555 357 10 6 549 21 563 2.77e-90 288
Msa0959240 AT2G24210.1 31.362 558 364 9 4 549 39 589 6.12e-90 288
Msa0959240 AT1G61680.1 31.893 486 321 3 48 528 77 557 2.56e-87 281
Msa0959240 AT3G25820.1 31.362 558 357 12 9 549 45 593 3.27e-87 281
Msa0959240 AT3G25830.1 31.362 558 357 12 9 549 45 593 3.27e-87 281
Msa0959240 AT3G25810.1 32.937 504 317 9 62 549 98 596 2.37e-86 279
Msa0959240 AT1G61680.2 31.481 486 316 4 48 528 77 550 5.85e-84 272
Msa0959240 AT5G48110.1 37.647 340 207 5 210 548 2 337 3.83e-83 263
Msa0959240 AT1G48820.1 30.983 539 322 11 11 543 63 557 7.61e-81 264
Msa0959240 AT4G16740.2 34.933 375 225 7 6 370 21 386 1.07e-69 229
Msa0959240 AT1G66020.2 34.688 369 232 6 11 373 56 421 8.07e-66 220
Msa0959240 AT3G25820.2 32.642 386 241 8 9 383 45 422 4.03e-65 219
Msa0959240 AT4G16740.4 35.562 329 194 6 6 324 21 341 1.65e-61 207
Msa0959240 AT4G16740.3 35.562 329 194 6 6 324 21 341 1.65e-61 207
Msa0959240 AT3G25820.4 33.945 327 197 8 9 324 45 363 7.86e-56 193
Msa0959240 AT3G25820.3 33.945 327 197 8 9 324 45 363 7.86e-56 193
Msa0959240 AT1G61120.1 24.319 514 345 13 62 548 286 782 1.46e-29 124
Msa0959240 AT1G79460.1 23.314 519 349 19 64 548 274 777 1.92e-26 114
Msa0959240 AT4G02780.1 30.469 256 148 7 67 294 334 587 4.21e-23 104

Find 92 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTACGTTGGCAAAAT+TGG 0.135143 6_3:-75676788 Msa0959240:CDS
ATTCTATTTCTGTGCTATTT+AGG 0.140011 6_3:-75677775 Msa0959240:CDS
TTCTATTTCTGTGCTATTTA+GGG 0.183039 6_3:-75677774 Msa0959240:CDS
CTGCTGTTCATTGCAGGCTT+AGG 0.241228 6_3:-75675276 Msa0959240:CDS
AGCCTACATCAAAAGGAATT+TGG 0.257080 6_3:-75676748 Msa0959240:CDS
ACGTAAGTAGAATTTCATTA+TGG 0.259315 6_3:+75676800 None:intergenic
GATTCATGGTGAGAAAATTT+TGG 0.259321 6_3:-75676986 Msa0959240:CDS
TCCGTATGCTTCAGAATCTT+TGG 0.269105 6_3:-75678785 Msa0959240:intron
GTCATCAATGTATGATAAAA+TGG 0.271835 6_3:+75676478 None:intergenic
ATGCTGCTGCTGTTCATTGC+AGG 0.286868 6_3:-75675282 Msa0959240:CDS
CAGATTTCCACCCTAGCGTT+TGG 0.305039 6_3:-75678822 Msa0959240:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.318717 6_3:-75678821 Msa0959240:CDS
AGACGAAATTAATCAAGTTT+TGG 0.321368 6_3:-75677855 Msa0959240:CDS
TTCCTTGCTTGTCCTTGAAT+TGG 0.334271 6_3:+75677076 None:intergenic
TAGTTGTTTGGATGATCTTC+CGG 0.341349 6_3:-75676148 Msa0959240:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6_3:-75676565 Msa0959240:CDS
TTATATGAGGGAATATGATA+TGG 0.360767 6_3:-75674925 Msa0959240:CDS
CCAATTGAAGATATCATTTG+TGG 0.372281 6_3:+75675330 None:intergenic
TGCTGTTCATTGCAGGCTTA+GGG 0.376798 6_3:-75675275 Msa0959240:CDS
CCACAAATGATATCTTCAAT+TGG 0.377027 6_3:-75675330 Msa0959240:CDS
TTCATGTATTCCTCTGTTGT+TGG 0.377218 6_3:+75675421 None:intergenic
CGTAAGTAGAATTTCATTAT+GGG 0.378944 6_3:+75676801 None:intergenic
AAACGTAATGGAACTTTAGT+TGG 0.382677 6_3:+75674825 None:intergenic
TAGGTGGGATATTAGTTGTT+TGG 0.387739 6_3:-75676160 Msa0959240:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6_3:+75676822 None:intergenic
GATTGACTCAATATGTCGTT+TGG 0.390339 6_3:-75677897 Msa0959240:CDS
CATACTTGGAATGTTATATG+AGG 0.398446 6_3:-75674938 Msa0959240:CDS
AGGACATGTTGCTTCATACT+TGG 0.399041 6_3:-75674952 Msa0959240:CDS
ATATAAATGAGGAATGTCTT+AGG 0.410838 6_3:-75674848 Msa0959240:CDS
TCGCAAGAGAAGGACTCAAT+TGG 0.412353 6_3:+75676917 None:intergenic
AAAAGAAAATTGACAATGCT+TGG 0.419595 6_3:-75674875 Msa0959240:CDS
TAGAGAAACTTCATGTAATC+CGG 0.427919 6_3:+75676129 None:intergenic
GCAAATTGATAAACTAAAAC+AGG 0.437343 6_3:-75677975 Msa0959240:CDS
GTTTCTCTATAAACCACTCT+TGG 0.439981 6_3:-75676115 Msa0959240:CDS
GCTCCAAAGCCTACATCAAA+AGG 0.450495 6_3:-75676755 Msa0959240:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6_3:-75675362 Msa0959240:CDS
CACAAATGATATCTTCAATT+GGG 0.456797 6_3:-75675329 Msa0959240:CDS
ACTACTCTGTCCCGTGCATA+AGG 0.457542 6_3:+75676581 None:intergenic
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_3:-75675361 Msa0959240:CDS
TTCCTTGCTTGACAATATTG+AGG 0.465049 6_3:+75676521 None:intergenic
GCCTCACATATGATGATTCA+TGG 0.465433 6_3:-75677000 Msa0959240:CDS
ATTGACTCAATATGTCGTTT+GGG 0.473862 6_3:-75677896 Msa0959240:CDS
ACCAAAATCAATGCTCATGT+TGG 0.476318 6_3:+75674681 None:intergenic
AGATGTATTCAACCAATTCA+AGG 0.477088 6_3:-75677088 Msa0959240:CDS
GAGCAAGAAGTGAAGAAAGA+AGG 0.477567 6_3:-75676075 Msa0959240:CDS
CGCAAGAGAAGGACTCAATT+GGG 0.484801 6_3:+75676918 None:intergenic
CCAAAATCAATGCTCATGTT+GGG 0.485248 6_3:+75674682 None:intergenic
AACATTGATCATAGATGTTG+AGG 0.512550 6_3:-75677043 Msa0959240:CDS
ATCAATGCTCATGTTGGGAT+GGG 0.522554 6_3:+75674687 None:intergenic
TAAGAAGTCGTAGCCAACAC+TGG 0.522936 6_3:+75675373 None:intergenic
CATGGTCTTTACGTTTCACC+TGG 0.523602 6_3:-75677740 Msa0959240:intron
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6_3:-75676621 Msa0959240:intron
AGCCTCAATATTGTCAAGCA+AGG 0.528176 6_3:-75676523 Msa0959240:CDS
CTGTGCTATTTAGGGTGTTG+AGG 0.528533 6_3:-75677766 Msa0959240:CDS
AATCAATGCTCATGTTGGGA+TGG 0.533171 6_3:+75674686 None:intergenic
TGGCCTCACTCATGTAAGCT+TGG 0.536408 6_3:+75675467 None:intergenic
GATTTCCACCCTAGCGTTTG+GGG 0.542721 6_3:-75678820 Msa0959240:CDS
TTGTCAAGCAAGGAAAATGA+TGG 0.545763 6_3:-75676513 Msa0959240:CDS
TAGCTTCTTGCCTCTAGCCT+AGG 0.554871 6_3:+75676850 None:intergenic
ATACTTGGAATGTTATATGA+GGG 0.559157 6_3:-75674937 Msa0959240:CDS
GACAAGCAAATCATTAATGT+AGG 0.560101 6_3:+75674713 None:intergenic
TTGACTTGTGTCGCAAGAGA+AGG 0.560387 6_3:+75676907 None:intergenic
GGAATTTGATATAAATATTG+CGG 0.567112 6_3:-75677999 Msa0959240:CDS
CTTGCGACACAAGTCAAACA+TGG 0.567322 6_3:-75676901 Msa0959240:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.568035 6_3:-75677758 Msa0959240:CDS
ATCAAGTGGTTACCCAGTGT+TGG 0.570889 6_3:-75675386 Msa0959240:CDS
AATGGAGAAATAACTCTCAA+AGG 0.571243 6_3:-75677806 Msa0959240:CDS
AAGCTTACATGAGTGAGGCC+AGG 0.576657 6_3:-75675465 Msa0959240:CDS
ATAGCACAGAAATAGAATGA+AGG 0.580450 6_3:+75677780 None:intergenic
TTGGCTACGACTTCTTACAT+TGG 0.586299 6_3:-75675367 Msa0959240:CDS
GATGACACGTATGATGCATA+CGG 0.587584 6_3:-75676461 Msa0959240:CDS
ACCAAAGATTCTGAAGCATA+CGG 0.593001 6_3:+75678784 None:intergenic
ATTGGGTTGCAATTGACTCA+AGG 0.594526 6_3:+75676935 None:intergenic
AACACATCAACAATATCAAG+TGG 0.595383 6_3:-75675400 Msa0959240:CDS
TCTTCATAAACATCCAAGAG+TGG 0.597368 6_3:+75676102 None:intergenic
ACATTGATCATAGATGTTGA+GGG 0.599537 6_3:-75677042 Msa0959240:CDS
GACAACTACACACATTCTGA+AGG 0.603730 6_3:-75674747 Msa0959240:CDS
TTTCCACCCTAGCGTTTGGG+GGG 0.604138 6_3:-75678818 Msa0959240:CDS
TAATGAAATTCTACTTACGT+TGG 0.604203 6_3:-75676797 Msa0959240:CDS
AACCAATTCAAGGACAAGCA+AGG 0.604565 6_3:-75677078 Msa0959240:CDS
AAGAAGTCGTAGCCAACACT+GGG 0.613680 6_3:+75675374 None:intergenic
CTTTATATATAGGTGGTGGA+AGG 0.614852 6_3:-75676627 Msa0959240:intron
ATTTCCACCCTAGCGTTTGG+GGG 0.619288 6_3:-75678819 Msa0959240:CDS
AAACCTCAATAAAACGCGAA+AGG 0.623927 6_3:+75674784 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 6_3:-75674859 Msa0959240:CDS
ACCATGAATCATCATATGTG+AGG 0.641340 6_3:+75676999 None:intergenic
ATAGTTAACATTCAACCACC+TGG 0.654774 6_3:+75675447 None:intergenic
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6_3:-75675254 Msa0959240:intron
AGTCCAAGCTTACATGAGTG+AGG 0.665674 6_3:-75675470 Msa0959240:CDS
AATTGATAAACTAAAACAGG+AGG 0.674763 6_3:-75677972 Msa0959240:CDS
CTTACATGAGTGAGGCCAGG+TGG 0.678940 6_3:-75675462 Msa0959240:CDS
TAACTATATACCAACAACAG+AGG 0.696944 6_3:-75675431 Msa0959240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAATTAAAGATATTAA+CGG - chr6_3:75675037-75675056 Msa0959240:intron 10.0%
!! TTGAAAATATATATATTACA+AGG + chr6_3:75675430-75675449 None:intergenic 10.0%
!!! ATTATATTTTTGATATCATT+AGG - chr6_3:75676256-75676275 Msa0959240:intron 10.0%
!!! ATTTAATTTTAAATTAAGGA+GGG + chr6_3:75676865-75676884 None:intergenic 10.0%
!!! AATTTAATTTTAAATTAAGG+AGG + chr6_3:75676866-75676885 None:intergenic 10.0%
!!! ATTAAATAATAACTTTTAGA+TGG - chr6_3:75677258-75677277 Msa0959240:intron 10.0%
!!! TTTTATCATATATTTATACA+CGG - chr6_3:75677321-75677340 Msa0959240:intron 10.0%
!!! TTATAATGAAAATGAATTTT+AGG - chr6_3:75677378-75677397 Msa0959240:intron 10.0%
!! TTTAAAAGAAGATTATATAT+TGG - chr6_3:75677922-75677941 Msa0959240:CDS 10.0%
!! TATATTATGAAAAGTGATTA+AGG - chr6_3:75675128-75675147 Msa0959240:intron 15.0%
!! GAATCATTAATATTAATAAG+TGG + chr6_3:75675854-75675873 None:intergenic 15.0%
!!! TAATTTTTTAACTTTGATCA+TGG - chr6_3:75675985-75676004 Msa0959240:intron 15.0%
!!! AATTTTTTAACTTTGATCAT+GGG - chr6_3:75675986-75676005 Msa0959240:intron 15.0%
!!! TAATATAAACCTCTAAAAAA+TGG - chr6_3:75676016-75676035 Msa0959240:intron 15.0%
!!! ATGATTGATTTACATAAAAT+AGG - chr6_3:75676144-75676163 Msa0959240:CDS 15.0%
!! ATAAAGACCAAAAATATTAT+AGG + chr6_3:75676916-75676935 None:intergenic 15.0%
!!! TATTTTTGGTCTTTATATAT+AGG - chr6_3:75676920-75676939 Msa0959240:CDS 15.0%
!! TGTTATCAGAATAAAAATTT+AGG - chr6_3:75677630-75677649 Msa0959240:intron 15.0%
!! AATATAGTAGAATTGTTAAT+AGG + chr6_3:75678041-75678060 None:intergenic 15.0%
!! TATTATATTAACTCTTAAGA+CGG + chr6_3:75678466-75678485 None:intergenic 15.0%
!! AATATAATAAGATGACATAA+TGG - chr6_3:75678477-75678496 Msa0959240:intron 15.0%
!! TTGTTCACGTAAAAAAAAAA+GGG + chr6_3:75674811-75674830 None:intergenic 20.0%
!! AAATAAAACCAAGAGAAAAT+AGG - chr6_3:75675188-75675207 Msa0959240:intron 20.0%
!! ATGTGTAATAATATCTATGT+TGG + chr6_3:75675314-75675333 None:intergenic 20.0%
!!! ACACTTAATTGTTATTTGAA+AGG + chr6_3:75675490-75675509 None:intergenic 20.0%
!! GGAATTTGATATAAATATTG+CGG - chr6_3:75675558-75675577 Msa0959240:intron 20.0%
!!! ATTTTTTAACTTTGATCATG+GGG - chr6_3:75675987-75676006 Msa0959240:intron 20.0%
!!! ATACTTAAACCATTTTTTAG+AGG + chr6_3:75676028-75676047 None:intergenic 20.0%
!! TTGATTTACATAAAATAGGA+AGG - chr6_3:75676148-75676167 Msa0959240:CDS 20.0%
!! AATTAAGATAATGTATAGTG+TGG + chr6_3:75676340-75676359 None:intergenic 20.0%
!!! CTAATTGCCTATAATATTTT+TGG - chr6_3:75676906-75676925 Msa0959240:CDS 20.0%
!!! GTTTTTCTATCTCTAAATTT+TGG + chr6_3:75677193-75677212 None:intergenic 20.0%
!!! TAATGAAAATGAATTTTAGG+TGG - chr6_3:75677381-75677400 Msa0959240:intron 20.0%
!!! AATGAAAATGAATTTTAGGT+GGG - chr6_3:75677382-75677401 Msa0959240:intron 20.0%
!!! TTTTGTTGAACTATTATCTA+CGG + chr6_3:75677960-75677979 None:intergenic 20.0%
!! CATATTTACCAAAAATACAT+AGG - chr6_3:75678000-75678019 Msa0959240:CDS 20.0%
!!! ATTGTTCATTTTTGTAAACA+AGG - chr6_3:75678393-75678412 Msa0959240:intron 20.0%
! GTTGTTCACGTAAAAAAAAA+AGG + chr6_3:75674812-75674831 None:intergenic 25.0%
! GCAATGTTAGTAATATTAAG+TGG + chr6_3:75675374-75675393 None:intergenic 25.0%
! TTCAAGAATGCCAATAATAT+AGG - chr6_3:75675445-75675464 Msa0959240:CDS 25.0%
! GTCAAAAGATCCTATATTAT+TGG + chr6_3:75675458-75675477 None:intergenic 25.0%
!!! TTCATGTTTTGATTACATAC+AGG - chr6_3:75675537-75675556 Msa0959240:intron 25.0%
! GCAAATTGATAAACTAAAAC+AGG - chr6_3:75675582-75675601 Msa0959240:intron 25.0%
! AATTGATAAACTAAAACAGG+AGG - chr6_3:75675585-75675604 Msa0959240:intron 25.0%
!!! ATCAAGTTGACTTTTTTCAA+CGG + chr6_3:75675643-75675662 None:intergenic 25.0%
!! AGACGAAATTAATCAAGTTT+TGG - chr6_3:75675702-75675721 Msa0959240:intron 25.0%
!!! ATTCTATTTCTGTGCTATTT+AGG - chr6_3:75675782-75675801 Msa0959240:intron 25.0%
!!! TTCTATTTCTGTGCTATTTA+GGG - chr6_3:75675783-75675802 Msa0959240:intron 25.0%
! CGTTGTTACTAAAAATGTAA+AGG + chr6_3:75676054-75676073 None:intergenic 25.0%
!!! TATTTTTGATATCATTAGGC+CGG - chr6_3:75676260-75676279 Msa0959240:intron 25.0%
! CGTAAGTAGAATTTCATTAT+GGG + chr6_3:75676759-75676778 None:intergenic 25.0%
! ACGTAAGTAGAATTTCATTA+TGG + chr6_3:75676760-75676779 None:intergenic 25.0%
! TAATGAAATTCTACTTACGT+TGG - chr6_3:75676760-75676779 Msa0959240:CDS 25.0%
!!! TTTTGGTCTTTATATATAGG+TGG - chr6_3:75676923-75676942 Msa0959240:CDS 25.0%
! GTCATCAATGTATGATAAAA+TGG + chr6_3:75677082-75677101 None:intergenic 25.0%
!! TGAGTTAGAACTTTTTACTA+AGG - chr6_3:75677128-75677147 Msa0959240:intron 25.0%
!! TTTTTACTAAGGCAATTGAA+AGG - chr6_3:75677139-75677158 Msa0959240:intron 25.0%
!!! TCTTACTTCTTTTAAGAAGT+GGG + chr6_3:75677525-75677544 None:intergenic 25.0%
! GATCTATGTATGTATCTATA+CGG + chr6_3:75677676-75677695 None:intergenic 25.0%
!! TTGTGATCAGAACATTTTTA+GGG - chr6_3:75677706-75677725 Msa0959240:intron 25.0%
! CACAAATGATATCTTCAATT+GGG - chr6_3:75678228-75678247 Msa0959240:intron 25.0%
! ATACTTGGAATGTTATATGA+GGG - chr6_3:75678620-75678639 Msa0959240:intron 25.0%
! TTATATGAGGGAATATGATA+TGG - chr6_3:75678632-75678651 Msa0959240:intron 25.0%
!!! AAGCATTGTCAATTTTCTTT+TGG + chr6_3:75678683-75678702 None:intergenic 25.0%
! AAAAGAAAATTGACAATGCT+TGG - chr6_3:75678682-75678701 Msa0959240:intron 25.0%
! ATATAAATGAGGAATGTCTT+AGG - chr6_3:75678709-75678728 Msa0959240:intron 25.0%
!!! GACATGTATTTTGAAACAGA+GGG + chr6_3:75674870-75674889 None:intergenic 30.0%
ATAGTGCACATTGCAAAAAT+TGG + chr6_3:75674892-75674911 None:intergenic 30.0%
!! CTTGGACATCTATTTTGAAA+CGG - chr6_3:75675095-75675114 Msa0959240:intron 30.0%
! GTTGGTTATTTGTTAGCAAT+AGG - chr6_3:75675237-75675256 Msa0959240:intron 30.0%
! TAGGATTTCCAACATTTTTG+AGG - chr6_3:75675277-75675296 Msa0959240:CDS 30.0%
!! TCCAACATTTTTGAGGAAAA+AGG - chr6_3:75675284-75675303 Msa0959240:CDS 30.0%
! TCCTTTTTCCTCAAAAATGT+TGG + chr6_3:75675288-75675307 None:intergenic 30.0%
TTAATTATACGATCCAAGTG+TGG + chr6_3:75675347-75675366 None:intergenic 30.0%
! ATTGACTCAATATGTCGTTT+GGG - chr6_3:75675661-75675680 Msa0959240:intron 30.0%
! CATTTTGAACAAAATCCTTG+TGG + chr6_3:75675735-75675754 None:intergenic 30.0%
! CACAAGGATTTTGTTCAAAA+TGG - chr6_3:75675733-75675752 Msa0959240:intron 30.0%
AATGGAGAAATAACTCTCAA+AGG - chr6_3:75675751-75675770 Msa0959240:intron 30.0%
ATAGCACAGAAATAGAATGA+AGG + chr6_3:75675780-75675799 None:intergenic 30.0%
TAAGTGGAGATATAAATACC+AGG + chr6_3:75675838-75675857 None:intergenic 30.0%
TTGAGTAAAACAAACTTGTG+TGG - chr6_3:75675902-75675921 Msa0959240:intron 30.0%
!! GGATAATGGGTTGTTTAATA+TGG + chr6_3:75676192-75676211 None:intergenic 30.0%
CATAACATTACACGGATAAT+GGG + chr6_3:75676205-75676224 None:intergenic 30.0%
AAGGTTCTTCCTTAATAAGA+TGG + chr6_3:75676302-75676321 None:intergenic 30.0%
AGATGTATTCAACCAATTCA+AGG - chr6_3:75676469-75676488 Msa0959240:CDS 30.0%
AACATTGATCATAGATGTTG+AGG - chr6_3:75676514-75676533 Msa0959240:CDS 30.0%
ACATTGATCATAGATGTTGA+GGG - chr6_3:75676515-75676534 Msa0959240:CDS 30.0%
! GATTCATGGTGAGAAAATTT+TGG - chr6_3:75676571-75676590 Msa0959240:CDS 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6_3:75676814-75676833 None:intergenic 30.0%
! ATTTTAAATTAAGGAGGGTG+TGG + chr6_3:75676860-75676879 None:intergenic 30.0%
CTAAAAAACTACCTTATGCA+CGG - chr6_3:75676965-75676984 Msa0959240:CDS 30.0%
TAAAAAACTACCTTATGCAC+GGG - chr6_3:75676966-75676985 Msa0959240:CDS 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6_3:75676993-75677012 Msa0959240:CDS 30.0%
TAGAGAAACTTCATGTAATC+CGG + chr6_3:75677431-75677450 None:intergenic 30.0%
!! TTCTTTTAAGAAGTGGGTAA+TGG + chr6_3:75677519-75677538 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+TGG + chr6_3:75677526-75677545 None:intergenic 30.0%
! CTTGTGATCAGAACATTTTT+AGG - chr6_3:75677705-75677724 Msa0959240:intron 30.0%
!! TGTGATCAGAACATTTTTAG+GGG - chr6_3:75677707-75677726 Msa0959240:intron 30.0%
TAACTATATACCAACAACAG+AGG - chr6_3:75678126-75678145 Msa0959240:intron 30.0%
AACACATCAACAATATCAAG+TGG - chr6_3:75678157-75678176 Msa0959240:intron 30.0%
CCAATTGAAGATATCATTTG+TGG + chr6_3:75678230-75678249 None:intergenic 30.0%
CCACAAATGATATCTTCAAT+TGG - chr6_3:75678227-75678246 Msa0959240:intron 30.0%
CATACTTGGAATGTTATATG+AGG - chr6_3:75678619-75678638 Msa0959240:intron 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG + chr6_3:75678670-75678689 None:intergenic 30.0%
TGCTTGGAAAGATATAAATG+AGG - chr6_3:75678698-75678717 Msa0959240:intron 30.0%
! AAACGTAATGGAACTTTAGT+TGG + chr6_3:75678735-75678754 None:intergenic 30.0%
GACAAGCAAATCATTAATGT+AGG + chr6_3:75678847-75678866 None:intergenic 30.0%
!! ACCAAAGATTCTGAAGCATA+CGG + chr6_3:75674776-75674795 None:intergenic 35.0%
!!! GGACATGTATTTTGAAACAG+AGG + chr6_3:75674871-75674890 None:intergenic 35.0%
TAACGGTCAAAATTGTGCAT+TGG - chr6_3:75675054-75675073 Msa0959240:intron 35.0%
!!! GACATCTATTTTGAAACGGA+GGG - chr6_3:75675099-75675118 Msa0959240:intron 35.0%
!! TAGCTCTACCTATTTTCTCT+TGG + chr6_3:75675199-75675218 None:intergenic 35.0%
CTAACAAATAACCAACCCTT+TGG + chr6_3:75675233-75675252 None:intergenic 35.0%
TTAGCAATAGGAATGAAACC+TGG - chr6_3:75675249-75675268 Msa0959240:intron 35.0%
! GATTGACTCAATATGTCGTT+TGG - chr6_3:75675660-75675679 Msa0959240:intron 35.0%
!!! AGTTTTGGAAGATATCCACA+AGG - chr6_3:75675717-75675736 Msa0959240:intron 35.0%
AAAATAGGAAGGATCATCGT+AGG - chr6_3:75676159-75676178 Msa0959240:CDS 35.0%
GCATAACATTACACGGATAA+TGG + chr6_3:75676206-75676225 None:intergenic 35.0%
GAACAGAGCATAACATTACA+CGG + chr6_3:75676213-75676232 None:intergenic 35.0%
TAATAAGATGGCTACCCTAT+AGG + chr6_3:75676290-75676309 None:intergenic 35.0%
ATAGGGTAGCCATCTTATTA+AGG - chr6_3:75676290-75676309 Msa0959240:intron 35.0%
!! GTGGTTCTAGAGTATGAAAA+AGG + chr6_3:75676321-75676340 None:intergenic 35.0%
ATGATTGTTCAACATTGTCG+TGG - chr6_3:75676428-75676447 Msa0959240:CDS 35.0%
ACCATGAATCATCATATGTG+AGG + chr6_3:75676561-75676580 None:intergenic 35.0%
!! TGGTGAGAAAATTTTGGAAG+AGG - chr6_3:75676577-75676596 Msa0959240:CDS 35.0%
!! GAAAATTTTGGAAGAGGCAT+TGG - chr6_3:75676583-75676602 Msa0959240:CDS 35.0%
TCTACTTACGTTGGCAAAAT+TGG - chr6_3:75676769-75676788 Msa0959240:CDS 35.0%
! ATTCCTTTTGATGTAGGCTT+TGG + chr6_3:75676808-75676827 None:intergenic 35.0%
AGCCTACATCAAAAGGAATT+TGG - chr6_3:75676809-75676828 Msa0959240:CDS 35.0%
TGGTCTTTATATATAGGTGG+TGG - chr6_3:75676926-75676945 Msa0959240:CDS 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6_3:75676930-75676949 Msa0959240:CDS 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6_3:75676992-75677011 Msa0959240:CDS 35.0%
!!! ATGTTGCTTTTGGGTTATGA+CGG - chr6_3:75677002-75677021 Msa0959240:CDS 35.0%
TTCCTTGCTTGACAATATTG+AGG + chr6_3:75677039-75677058 None:intergenic 35.0%
TTGTCAAGCAAGGAAAATGA+TGG - chr6_3:75677044-75677063 Msa0959240:CDS 35.0%
TAGGTGGGATATTAGTTGTT+TGG - chr6_3:75677397-75677416 Msa0959240:intron 35.0%
TAGTTGTTTGGATGATCTTC+CGG - chr6_3:75677409-75677428 Msa0959240:intron 35.0%
GTTTCTCTATAAACCACTCT+TGG - chr6_3:75677442-75677461 Msa0959240:intron 35.0%
TCTTCATAAACATCCAAGAG+TGG + chr6_3:75677458-75677477 None:intergenic 35.0%
! TTCTGATCACAAGATTTGCT+AGG + chr6_3:75677698-75677717 None:intergenic 35.0%
! CCTGAACTCCTATGTATTTT+TGG + chr6_3:75678011-75678030 None:intergenic 35.0%
CCAAAAATACATAGGAGTTC+AGG - chr6_3:75678008-75678027 Msa0959240:intron 35.0%
ATAGTTAACATTCAACCACC+TGG + chr6_3:75678113-75678132 None:intergenic 35.0%
TTCATGTATTCCTCTGTTGT+TGG + chr6_3:75678139-75678158 None:intergenic 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_3:75678195-75678214 Msa0959240:intron 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_3:75678196-75678215 Msa0959240:intron 35.0%
! GCAGCAGCATTAACAATTTT+CGG + chr6_3:75678265-75678284 None:intergenic 35.0%
AAACAGTTCGAGCAAAAAAG+AGG - chr6_3:75678585-75678604 Msa0959240:intron 35.0%
ACACACGTCAAAAAACGTAA+TGG + chr6_3:75678747-75678766 None:intergenic 35.0%
AAACCTCAATAAAACGCGAA+AGG + chr6_3:75678776-75678795 None:intergenic 35.0%
TCCGTATGCTTCAGAATCTT+TGG - chr6_3:75674772-75674791 Msa0959240:CDS 40.0%
CATATGTGAAGTGGTTGACT+TGG - chr6_3:75675077-75675096 Msa0959240:intron 40.0%
!!! GGACATCTATTTTGAAACGG+AGG - chr6_3:75675098-75675117 Msa0959240:intron 40.0%
AGCTATAGCAAACACTCCAA+AGG - chr6_3:75675214-75675233 Msa0959240:intron 40.0%
GCTATAGCAAACACTCCAAA+GGG - chr6_3:75675215-75675234 Msa0959240:intron 40.0%
! GGAATGAAACCTGGTGTTTT+AGG - chr6_3:75675258-75675277 Msa0959240:CDS 40.0%
GTTGGAAATCCTAAAACACC+AGG + chr6_3:75675270-75675289 None:intergenic 40.0%
TTATACGATCCAAGTGTGGT+TGG + chr6_3:75675343-75675362 None:intergenic 40.0%
ACTAACATTGCACACTCCAA+AGG - chr6_3:75675383-75675402 Msa0959240:CDS 40.0%
CTAACATTGCACACTCCAAA+GGG - chr6_3:75675384-75675403 Msa0959240:CDS 40.0%
GTGAGTAACTTGAATCCCTT+TGG + chr6_3:75675402-75675421 None:intergenic 40.0%
! ATTAGGCCGGTTTACCTATA+GGG - chr6_3:75676273-75676292 Msa0959240:intron 40.0%
AACCAATTCAAGGACAAGCA+AGG - chr6_3:75676479-75676498 Msa0959240:CDS 40.0%
TTCCTTGCTTGTCCTTGAAT+TGG + chr6_3:75676484-75676503 None:intergenic 40.0%
GCCTCACATATGATGATTCA+TGG - chr6_3:75676557-75676576 Msa0959240:CDS 40.0%
! ATTGGGTTGCAATTGACTCA+AGG + chr6_3:75676625-75676644 None:intergenic 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6_3:75676738-75676757 None:intergenic 40.0%
AGCCTCAATATTGTCAAGCA+AGG - chr6_3:75677034-75677053 Msa0959240:CDS 40.0%
GATGACACGTATGATGCATA+CGG - chr6_3:75677096-75677115 Msa0959240:intron 40.0%
GAGCAAGAAGTGAAGAAAGA+AGG - chr6_3:75677482-75677501 Msa0959240:intron 40.0%
GTATGTATCTATACGGAGAG+TGG + chr6_3:75677669-75677688 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_3:75678190-75678209 Msa0959240:intron 40.0%
! AGGACATGTTGCTTCATACT+TGG - chr6_3:75678605-75678624 Msa0959240:intron 40.0%
!! CAACCTTTCGCGTTTTATTG+AGG - chr6_3:75678770-75678789 Msa0959240:intron 40.0%
GACAACTACACACATTCTGA+AGG - chr6_3:75678810-75678829 Msa0959240:CDS 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6_3:75674736-75674755 Msa0959240:CDS 45.0%
! GTGCATTGGCATATGTGAAG+TGG - chr6_3:75675068-75675087 Msa0959240:intron 45.0%
TAGCAAACACTCCAAAGGGT+TGG - chr6_3:75675219-75675238 Msa0959240:intron 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6_3:75675791-75675810 Msa0959240:intron 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6_3:75675799-75675818 Msa0959240:intron 45.0%
CATGGTCTTTACGTTTCACC+TGG - chr6_3:75675817-75675836 Msa0959240:intron 45.0%
AGGAAGGATCATCGTAGGAT+CGG - chr6_3:75676164-75676183 Msa0959240:intron 45.0%
! CATTAGGCCGGTTTACCTAT+AGG - chr6_3:75676272-75676291 Msa0959240:intron 45.0%
TGGCTACCCTATAGGTAAAC+CGG + chr6_3:75676282-75676301 None:intergenic 45.0%
!!! GAGGCATTGGCTTTTACTTC+TGG - chr6_3:75676596-75676615 Msa0959240:CDS 45.0%
CGCAAGAGAAGGACTCAATT+GGG + chr6_3:75676642-75676661 None:intergenic 45.0%
TCGCAAGAGAAGGACTCAAT+TGG + chr6_3:75676643-75676662 None:intergenic 45.0%
!! TTGACTTGTGTCGCAAGAGA+AGG + chr6_3:75676653-75676672 None:intergenic 45.0%
CTTGCGACACAAGTCAAACA+TGG - chr6_3:75676656-75676675 Msa0959240:intron 45.0%
CAAAAACTTGCCTAGGCTAG+AGG - chr6_3:75676697-75676716 Msa0959240:intron 45.0%
GCTCCAAAGCCTACATCAAA+AGG - chr6_3:75676802-75676821 Msa0959240:CDS 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6_3:75676936-75676955 Msa0959240:CDS 45.0%
AGTCCAAGCTTACATGAGTG+AGG - chr6_3:75678087-75678106 Msa0959240:intron 45.0%
ATCAAGTGGTTACCCAGTGT+TGG - chr6_3:75678171-75678190 Msa0959240:intron 45.0%
AAGAAGTCGTAGCCAACACT+GGG + chr6_3:75678186-75678205 None:intergenic 45.0%
TAAGAAGTCGTAGCCAACAC+TGG + chr6_3:75678187-75678206 None:intergenic 45.0%
TGCTGTTCATTGCAGGCTTA+GGG - chr6_3:75678282-75678301 Msa0959240:intron 45.0%
GGATGAAATTGTGTCTAGCG+AGG - chr6_3:75678303-75678322 Msa0959240:intron 45.0%
!!! TCATTTTTTATATTTTAATT+TGG - chr6_3:75675872-75675891 Msa0959240:intron 5.0%
!!! TTCAATTTAATTTTAAATTA+AGG + chr6_3:75676869-75676888 None:intergenic 5.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6_3:75674735-75674754 Msa0959240:CDS 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6_3:75674737-75674756 Msa0959240:CDS 50.0%
ATTTCCACCCTAGCGTTTGG+GGG - chr6_3:75674738-75674757 Msa0959240:CDS 50.0%
CATTGCACACCAACCACACT+TGG - chr6_3:75675331-75675350 Msa0959240:CDS 50.0%
! CTAGGCAAGTTTTTGCGCAG+AGG + chr6_3:75676692-75676711 None:intergenic 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6_3:75676690-75676709 Msa0959240:intron 50.0%
TAGCTTCTTGCCTCTAGCCT+AGG + chr6_3:75676710-75676729 None:intergenic 50.0%
ACTACTCTGTCCCGTGCATA+AGG + chr6_3:75676979-75676998 None:intergenic 50.0%
TGGCCTCACTCATGTAAGCT+TGG + chr6_3:75678093-75678112 None:intergenic 50.0%
AAGCTTACATGAGTGAGGCC+AGG - chr6_3:75678092-75678111 Msa0959240:intron 50.0%
ATGCTGCTGCTGTTCATTGC+AGG - chr6_3:75678275-75678294 Msa0959240:intron 50.0%
CTGCTGTTCATTGCAGGCTT+AGG - chr6_3:75678281-75678300 Msa0959240:intron 50.0%
TTTCCACCCTAGCGTTTGGG+GGG - chr6_3:75674739-75674758 Msa0959240:CDS 55.0%
AGAAGTCCCCCCAAACGCTA+GGG + chr6_3:75674748-75674767 None:intergenic 55.0%
AAGAAGTCCCCCCAAACGCT+AGG + chr6_3:75674749-75674768 None:intergenic 55.0%
CTTACATGAGTGAGGCCAGG+TGG - chr6_3:75678095-75678114 Msa0959240:intron 55.0%
AGTCCCCCCAAACGCTAGGG+TGG + chr6_3:75674745-75674764 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 75674695 75678884 75674695 ID=Msa0959240;Name=Msa0959240
chr6_3 mRNA 75674695 75678884 75674695 ID=Msa0959240-mRNA-1;Parent=Msa0959240;Name=Msa0959240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|7|0|550
chr6_3 exon 75678786 75678884 75678786 ID=Msa0959240-mRNA-1:exon:13563;Parent=Msa0959240-mRNA-1
chr6_3 exon 75677741 75678020 75677741 ID=Msa0959240-mRNA-1:exon:13562;Parent=Msa0959240-mRNA-1
chr6_3 exon 75676736 75677108 75676736 ID=Msa0959240-mRNA-1:exon:13561;Parent=Msa0959240-mRNA-1
chr6_3 exon 75676419 75676637 75676419 ID=Msa0959240-mRNA-1:exon:13560;Parent=Msa0959240-mRNA-1
chr6_3 exon 75676041 75676179 75676041 ID=Msa0959240-mRNA-1:exon:13559;Parent=Msa0959240-mRNA-1
chr6_3 exon 75675255 75675503 75675255 ID=Msa0959240-mRNA-1:exon:13558;Parent=Msa0959240-mRNA-1
chr6_3 exon 75674695 75674988 75674695 ID=Msa0959240-mRNA-1:exon:13557;Parent=Msa0959240-mRNA-1
chr6_3 CDS 75678786 75678884 75678786 ID=Msa0959240-mRNA-1:cds;Parent=Msa0959240-mRNA-1
chr6_3 CDS 75677741 75678020 75677741 ID=Msa0959240-mRNA-1:cds;Parent=Msa0959240-mRNA-1
chr6_3 CDS 75676736 75677108 75676736 ID=Msa0959240-mRNA-1:cds;Parent=Msa0959240-mRNA-1
chr6_3 CDS 75676419 75676637 75676419 ID=Msa0959240-mRNA-1:cds;Parent=Msa0959240-mRNA-1
chr6_3 CDS 75676041 75676179 75676041 ID=Msa0959240-mRNA-1:cds;Parent=Msa0959240-mRNA-1
chr6_3 CDS 75675255 75675503 75675255 ID=Msa0959240-mRNA-1:cds;Parent=Msa0959240-mRNA-1
chr6_3 CDS 75674695 75674988 75674695 ID=Msa0959240-mRNA-1:cds;Parent=Msa0959240-mRNA-1
Gene Sequence

>Msa0959240

ATGTCTCATAACGAGAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGAATTTGATATAAATATTGCGGCGCAAATTGATAAACTAAAACAGGAGGTTAGACAAATGCTTGTCTCAAAAATCGAGAATCCGTTGAAAAAAGTCAACTTGATTGACTCAATATGTCGTTTGGGTGTGAGCTATTATTTTGAAGACGAAATTAATCAAGTTTTGGAAGATATCCACAAGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGCAACCTTCATTCTATTTCTGTGCTATTTAGGGTGTTGAGGCAACATGGTCTTTACGTTTCACCTGATGTATTCAACCAATTCAAGGACAAGCAAGGAAATTTTAGTGAAACATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGATTCATGGTGAGAAAATTTTGGAAGAGGCATTGGCTTTTACTTCTGGTCACCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGACACAAGTCAAACATGGCTTAAGACATCCTCTGCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAGGAATTTGGAAACATTTGCAAGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAATGATGGCAAAAGTAATCTCCATTTTATCATACATTGATGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGCAATTGAAAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATTGAGCAAGAAGTGAAGAAAGAAGGAAGAGTATATGCCATTACCCACTTCTTAAAAGAATTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAACTATATACCAACAACAGAGGAATACATGAACACATCAACAATATCAAGTGGTTACCCAGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCCACAAATGATATCTTCAATTGGGTAACTAGTCATCCGAAAATTGTTAATGCTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCGAGTTCGAGCAAAAAAGAGGACATGTTGCTTCATACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTACGTTTTTTGACGTGTGTTCTCAACCTTTCGCGTTTTATTGAGGTTTTTTACAAAGATGAAGACAACTACACACATTCTGAAGGACTAATGAAGACCTACATTAATGATTTGCTTGTCAATCCCATCCCAACATGA
Protein sequence

>Msa0959240

MSHNEKSVLQRNVADFHPSVWGDFFIPYASESLEFDINIAAQIDKLKQEVRQMLVSKIENPLKKVNLIDSICRLGVSYYFEDEINQVLEDIHKDFVQNGEITLKGNLHSISVLFRVLRQHGLYVSPDVFNQFKDKQGNFSETLIIDVEGMLNLYEASHMMIHGEKILEEALAFTSGHLESIATQLSPSLATQVKHGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQSLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKMMAKVISILSYIDDTYDAYGTIDELELFTKAIERWDISCLDDLPDYMKFLYKPLLDVYEEIEQEVKKEGRVYAITHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPVLATTSYIGMGNIATNDIFNWVTSHPKIVNAAAVHCRLRDEIVSSEFEQKRGHVASYLECYMREYDMDREAAIQECQKKIDNAWKDINEECLRPTKVPLRFLTCVLNLSRFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT*