AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0894040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0894040 MtrunA17_Chr6g0465441 68.852 549 171 0 1 549 4 552 0.0 812
Msa0894040 MtrunA17_Chr7g0236991 68.306 549 174 0 1 549 4 552 0.0 810
Msa0894040 MtrunA17_Chr7g0237001 68.124 549 175 0 1 549 4 552 0.0 808
Msa0894040 MtrunA17_Chr7g0237041 68.124 549 175 0 1 549 4 552 0.0 808
Msa0894040 MtrunA17_Chr7g0237081 68.124 549 175 0 1 549 4 552 0.0 808
Msa0894040 MtrunA17_Chr7g0237051 68.124 549 175 0 1 549 4 552 0.0 808
Msa0894040 MtrunA17_Chr5g0425371 70.370 540 160 0 10 549 13 552 0.0 801
Msa0894040 MtrunA17_Chr4g0024691 69.414 546 167 0 4 549 15 560 0.0 798
Msa0894040 MtrunA17_Chr6g0465911 68.124 549 175 0 1 549 4 552 0.0 796
Msa0894040 MtrunA17_Chr6g0466051 67.942 549 176 0 1 549 4 552 0.0 794
Msa0894040 MtrunA17_Chr6g0451711 67.395 549 178 1 2 549 8 556 0.0 790
Msa0894040 MtrunA17_Chr3g0105071 66.667 549 182 1 1 548 7 555 0.0 773
Msa0894040 MtrunA17_Chr3g0082691 65.217 552 189 2 1 549 1 552 0.0 758
Msa0894040 MtrunA17_Chr6g0465851 69.052 517 160 0 33 549 1 517 0.0 754
Msa0894040 MtrunA17_Chr7g0236961 69.416 497 152 0 53 549 1 497 0.0 743
Msa0894040 MtrunA17_Chr5g0431651 64.428 551 194 2 1 549 1 551 0.0 743
Msa0894040 MtrunA17_Chr7g0237011 69.416 497 152 0 53 549 1 497 0.0 741
Msa0894040 MtrunA17_Chr5g0431571 65.993 544 184 1 6 548 4 547 0.0 741
Msa0894040 MtrunA17_Chr4g0042111 58.394 548 225 2 4 549 15 561 0.0 667
Msa0894040 MtrunA17_Chr7g0236971 69.250 400 123 0 150 549 1 400 0.0 602
Msa0894040 MtrunA17_Chr6g0465981 68.378 370 117 0 1 370 4 373 0.0 540
Msa0894040 MtrunA17_Chr6g0465871 68.378 370 117 0 1 370 4 373 0.0 540
Msa0894040 MtrunA17_Chr6g0466081 68.378 370 117 0 1 370 4 373 0.0 540
Msa0894040 MtrunA17_Chr6g0466111 69.822 338 102 0 33 370 1 338 2.31e-175 498
Msa0894040 MtrunA17_Chr6g0465931 69.527 338 103 0 33 370 1 338 2.11e-174 496
Msa0894040 MtrunA17_Chr2g0319041 45.421 546 290 7 9 548 12 555 1.06e-172 500
Msa0894040 MtrunA17_Chr8g0336181 45.803 548 289 6 7 548 9 554 2.60e-169 491
Msa0894040 MtrunA17_Chr7g0236951 70.159 315 94 0 53 367 1 315 2.15e-167 477
Msa0894040 MtrunA17_Chr7g0237031 70.159 315 94 0 53 367 1 315 1.06e-166 475
Msa0894040 MtrunA17_Chr2g0319051 45.401 511 273 6 42 548 4 512 3.42e-163 474
Msa0894040 MtrunA17_Chr6g0466031 66.409 259 87 0 291 549 1 259 2.66e-123 362
Msa0894040 MtrunA17_Chr4g0008621 45.500 400 214 4 9 404 19 418 4.98e-122 366
Msa0894040 MtrunA17_Chr5g0445511 66.109 239 81 0 145 383 1 239 1.87e-115 342
Msa0894040 MtrunA17_Chr2g0319071 37.524 517 273 10 38 550 19 489 8.96e-113 344
Msa0894040 MtrunA17_Chr4g0023911 34.615 546 346 4 7 548 41 579 1.34e-112 347
Msa0894040 MtrunA17_Chr7g0237061 61.390 259 77 2 291 549 1 236 9.46e-109 324
Msa0894040 MtrunA17_Chr2g0310331 35.490 541 339 6 11 549 53 585 6.24e-108 335
Msa0894040 MtrunA17_Chr2g0323131 35.534 515 309 9 43 550 67 565 4.26e-106 329
Msa0894040 MtrunA17_Chr2g0323151 35.174 489 300 5 65 549 4 479 8.83e-102 315
Msa0894040 MtrunA17_Chr8g0357411 33.394 551 358 5 1 549 45 588 1.21e-97 308
Msa0894040 MtrunA17_Chr7g0237071 68.317 202 64 0 53 254 1 202 4.88e-93 284
Msa0894040 MtrunA17_Chr6g0466021 65.152 198 69 0 1 198 4 201 2.70e-89 273
Msa0894040 MtrunA17_Chr4g0048921 32.427 515 335 6 38 548 64 569 6.46e-88 282
Msa0894040 MtrunA17_Chr7g0237021 69.006 171 53 0 379 549 1 171 1.95e-84 259
Msa0894040 MtrunA17_Chr7g0236941 69.006 171 53 0 379 549 1 171 1.95e-84 259
Msa0894040 MtrunA17_Chr4g0048911 30.769 546 366 9 2 542 18 556 5.40e-84 272
Msa0894040 MtrunA17_Chr6g0465941 67.251 171 56 0 379 549 1 171 4.63e-80 248
Msa0894040 MtrunA17_Chr6g0466121 67.251 171 56 0 379 549 1 171 4.63e-80 248
Msa0894040 MtrunA17_Chr6g0465991 67.251 171 56 0 379 549 1 171 4.63e-80 248
Msa0894040 MtrunA17_Chr6g0466091 67.251 171 56 0 379 549 1 171 4.63e-80 248
Msa0894040 MtrunA17_Chr6g0465881 66.667 171 57 0 379 549 1 171 2.55e-79 246
Msa0894040 MtrunA17_Chr2g0280581 30.000 520 347 8 36 541 2 518 1.07e-77 254
Msa0894040 MtrunA17_Chr2g0319081 40.123 324 175 7 228 548 118 425 1.23e-75 246
Msa0894040 MtrunA17_Chr2g0319081 40.984 122 71 1 9 129 19 140 4.31e-23 102
Msa0894040 MtrunA17_Chr2g0310401 32.944 428 284 2 124 549 5 431 2.76e-74 242
Msa0894040 MtrunA17_Chr5g0445501 61.988 171 65 0 379 549 1 171 2.44e-73 231
Msa0894040 MtrunA17_Chr3g0108941 29.825 513 332 10 48 544 13 513 5.27e-72 239
Msa0894040 MtrunA17_Chr3g0109001 30.584 497 319 9 48 528 13 499 5.27e-72 239
Msa0894040 MtrunA17_Chr3g0109021 30.645 496 319 9 48 528 13 498 4.03e-71 236
Msa0894040 MtrunA17_Chr3g0109031 30.000 490 330 8 48 528 13 498 2.32e-70 234
Msa0894040 MtrunA17_Chr7g0236921 64.968 157 51 1 397 549 1 157 2.51e-70 223
Msa0894040 MtrunA17_Chr6g0477111 30.561 481 310 8 67 532 6 477 4.76e-70 233
Msa0894040 MtrunA17_Chr3g0105691 30.061 489 331 6 48 528 46 531 3.93e-69 232
Msa0894040 MtrunA17_Chr3g0108981 29.979 477 311 6 67 528 6 474 5.41e-68 228
Msa0894040 MtrunA17_Chr3g0108961 29.979 477 311 6 67 528 6 474 5.41e-68 228
Msa0894040 MtrunA17_Chr3g0108991 29.839 496 323 9 48 528 13 498 7.56e-68 228
Msa0894040 MtrunA17_Chr3g0108951 29.839 496 323 9 48 528 13 498 7.56e-68 228
Msa0894040 MtrunA17_Chr3g0099031 29.804 510 335 10 48 544 13 512 5.03e-66 223
Msa0894040 MtrunA17_Chr7g0236931 63.399 153 53 1 397 549 1 150 6.20e-66 211
Msa0894040 MtrunA17_Chr3g0108971 29.769 477 311 8 67 528 6 473 6.70e-66 222
Msa0894040 MtrunA17_Chr3g0109011 29.560 477 312 8 67 528 6 473 7.43e-66 222
Msa0894040 MtrunA17_Chr6g0477121 29.512 410 278 6 127 528 10 416 1.74e-57 197
Msa0894040 MtrunA17_Chr7g0236981 60.465 129 51 0 1 129 4 132 4.84e-52 174
Msa0894040 MtrunA17_Chr7g0233861 62.963 135 41 1 190 324 33 158 8.58e-52 175
Msa0894040 MtrunA17_Chr7g0217361 33.667 300 198 1 249 547 8 307 2.96e-50 175
Msa0894040 MtrunA17_Chr8g0357221 37.143 245 145 4 3 245 47 284 2.71e-43 155
Msa0894040 MtrunA17_Chr8g0357231 29.730 259 180 2 292 549 1 258 4.56e-34 129
Msa0894040 MtrunA17_Chr5g0445401 70.526 95 24 2 160 251 1 94 9.99e-34 123
Msa0894040 MtrunA17_Chr2g0310121 24.419 516 348 15 64 548 275 779 3.36e-33 134
Msa0894040 MtrunA17_Chr3g0101681 25.621 523 333 17 64 548 276 780 6.20e-33 134
Msa0894040 MtrunA17_Chr5g0445521 65.060 83 29 0 6 88 12 94 1.98e-32 120
Msa0894040 MtrunA17_Chr3g0082711 48.696 115 42 1 435 549 1 98 2.50e-32 119
Msa0894040 MtrunA17_Chr7g0259881 29.368 269 160 7 67 307 232 498 4.89e-26 112
Msa0894040 MtrunA17_Chr7g0218001 31.481 270 151 7 67 304 349 616 7.57e-25 109
Msa0894040 MtrunA17_Chr7g0217351 29.954 217 143 5 40 252 62 273 5.62e-22 96.7
Msa0894040 MtrunA17_Chr2g0281651 26.087 276 195 6 227 499 43 312 3.46e-18 87.0
Msa0894040 MtrunA17_Chr7g0218041 31.667 240 137 7 114 328 3 240 2.33e-17 84.7
Msa0894040 MtrunA17_Chr5g0411111 38.889 126 62 5 114 228 3 124 8.40e-14 68.6
Msa0894040 MtrunA17_Chr2g0310411 31.200 125 76 4 2 125 49 164 3.83e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0894040 AT5G23960.2 39.377 546 324 5 7 549 3 544 6.73e-147 434
Msa0894040 AT5G23960.1 39.416 548 323 6 7 549 3 546 3.45e-146 432
Msa0894040 AT1G70080.1 37.546 546 331 7 11 548 66 609 5.65e-124 377
Msa0894040 AT3G14490.1 37.363 546 330 7 11 549 60 600 3.01e-120 367
Msa0894040 AT3G14520.1 36.178 539 336 5 16 549 68 603 1.68e-119 365
Msa0894040 AT1G31950.1 35.741 540 337 5 16 549 70 605 7.57e-119 364
Msa0894040 AT1G31950.3 35.675 541 337 6 16 549 70 606 3.43e-118 362
Msa0894040 AT3G14540.1 36.364 539 335 4 16 549 65 600 1.66e-117 360
Msa0894040 AT5G44630.1 35.596 545 340 6 12 548 14 555 2.26e-112 345
Msa0894040 AT1G33750.1 34.457 534 344 4 18 549 73 602 3.02e-111 344
Msa0894040 AT3G32030.1 34.323 539 346 6 16 549 68 603 6.10e-110 341
Msa0894040 AT3G29410.1 34.438 543 348 6 11 549 64 602 6.60e-110 340
Msa0894040 AT4G20210.1 34.249 546 346 7 11 548 58 598 8.83e-109 337
Msa0894040 AT4G13300.1 36.127 537 332 7 19 548 20 552 2.51e-108 335
Msa0894040 AT4G15870.1 34.296 554 338 9 3 548 61 596 3.53e-106 331
Msa0894040 AT4G20200.1 35.328 518 317 9 42 548 92 602 8.59e-106 330
Msa0894040 AT3G29190.1 34.019 535 327 9 32 549 75 600 2.20e-104 326
Msa0894040 AT3G29410.2 34.600 500 321 4 53 549 1 497 6.26e-104 322
Msa0894040 AT4G13280.2 35.327 535 335 7 21 548 22 552 1.46e-102 320
Msa0894040 AT1G31950.2 35.667 457 283 6 16 465 70 522 1.94e-98 308
Msa0894040 AT4G16730.1 31.608 541 353 7 22 549 2 538 1.95e-98 309
Msa0894040 AT4G20230.1 33.087 541 340 9 19 546 70 601 5.29e-98 310
Msa0894040 AT3G14540.2 36.771 446 275 3 16 457 65 507 6.17e-98 306
Msa0894040 AT4G20230.2 33.087 541 340 9 19 546 82 613 9.82e-98 309
Msa0894040 AT3G29110.1 34.128 545 348 9 11 548 55 595 4.01e-96 305
Msa0894040 AT4G16730.2 32.323 495 320 5 67 549 1 492 2.89e-95 299
Msa0894040 AT2G23230.2 32.967 546 351 9 10 545 55 595 4.20e-94 300
Msa0894040 AT1G66020.1 32.353 544 359 6 11 548 56 596 4.30e-93 296
Msa0894040 AT2G23230.1 32.784 546 347 10 10 545 55 590 1.64e-91 293
Msa0894040 AT4G13280.1 34.206 535 311 9 21 548 22 522 5.66e-91 289
Msa0894040 AT1G48800.1 31.136 546 360 9 11 546 63 602 1.41e-90 290
Msa0894040 AT4G16740.1 31.532 555 357 10 6 549 21 563 6.90e-90 287
Msa0894040 AT2G24210.1 31.183 558 365 9 4 549 39 589 3.29e-88 284
Msa0894040 AT1G61680.1 31.893 486 321 3 48 528 77 557 1.84e-87 281
Msa0894040 AT3G25820.1 31.183 558 358 11 9 549 45 593 1.67e-86 280
Msa0894040 AT3G25830.1 31.183 558 358 11 9 549 45 593 1.67e-86 280
Msa0894040 AT3G25810.1 33.135 504 316 9 62 549 98 596 6.47e-86 278
Msa0894040 AT1G61680.2 31.481 486 316 4 48 528 77 550 4.35e-84 272
Msa0894040 AT5G48110.1 37.647 340 207 5 210 548 2 337 1.93e-83 263
Msa0894040 AT1G48820.1 30.983 539 322 12 11 543 63 557 2.34e-79 259
Msa0894040 AT4G16740.2 35.393 356 212 6 6 351 21 368 2.73e-68 226
Msa0894040 AT3G25820.2 32.383 386 242 7 9 383 45 422 3.96e-64 216
Msa0894040 AT1G66020.2 34.417 369 233 6 11 373 56 421 4.49e-64 216
Msa0894040 AT4G16740.4 35.258 329 195 6 6 324 21 341 2.81e-60 204
Msa0894040 AT4G16740.3 35.258 329 195 6 6 324 21 341 2.81e-60 204
Msa0894040 AT3G25820.4 33.639 327 198 7 9 324 45 363 2.85e-55 191
Msa0894040 AT3G25820.3 33.639 327 198 7 9 324 45 363 2.85e-55 191
Msa0894040 AT1G61120.1 24.514 514 344 13 62 548 286 782 1.33e-29 124
Msa0894040 AT1G79460.1 23.314 519 349 18 64 548 274 777 3.09e-26 114
Msa0894040 AT4G02780.1 31.250 256 146 7 67 294 334 587 4.94e-23 103

Find 93 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTATTGCTGTGCTATTT+AGG 0.092626 6_1:-79141650 Msa0894040:CDS
TCTACTTACGTTGGCAAAAT+TGG 0.135143 6_1:-79140620 Msa0894040:CDS
TTCTATTGCTGTGCTATTTA+GGG 0.199483 6_1:-79141649 Msa0894040:CDS
AACCTACATCAAAAGGAATT+TGG 0.224102 6_1:-79140580 Msa0894040:CDS
CTGCTGTTCATTGCAGGCTT+AGG 0.241228 6_1:-79139095 Msa0894040:CDS
ACGTAAGTAGAATTTCATTA+TGG 0.259315 6_1:+79140632 None:intergenic
GATTCATGGTGAGAAAATTT+TGG 0.259321 6_1:-79140818 Msa0894040:CDS
TCCGTATGCTTCAGAATCTT+TGG 0.269105 6_1:-79142336 Msa0894040:intron
ATGCTGCTGCTGTTCATTGC+AGG 0.286868 6_1:-79139101 Msa0894040:CDS
CAGATTTCCACCCTAGCGTT+TGG 0.305039 6_1:-79142373 Msa0894040:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.318717 6_1:-79142372 Msa0894040:CDS
AGACGAAATTAATCAAGTTT+TGG 0.321368 6_1:-79141730 Msa0894040:CDS
AATTGACTCAATATGTCGTT+TGG 0.326217 6_1:-79141772 Msa0894040:CDS
TTCCTTGCTTGTCCTTGAAT+TGG 0.334271 6_1:+79140908 None:intergenic
TAGTTGTTTGGATGATCTTC+CGG 0.341349 6_1:-79139964 Msa0894040:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6_1:-79140397 Msa0894040:CDS
TTATATGAGGGAATATGATA+TGG 0.360767 6_1:-79138747 Msa0894040:CDS
GTCGTCAATGTATGATAAAA+TGG 0.369007 6_1:+79140310 None:intergenic
CCAATTGAAGATATCATTTG+TGG 0.372281 6_1:+79139149 None:intergenic
TTCATGTACTCCTCTGTTGT+TGG 0.374525 6_1:+79139240 None:intergenic
TGCTGTTCATTGCAGGCTTA+GGG 0.376798 6_1:-79139094 Msa0894040:CDS
CCACAAATGATATCTTCAAT+TGG 0.377027 6_1:-79139149 Msa0894040:CDS
CGTAAGTAGAATTTCATTAT+GGG 0.378944 6_1:+79140633 None:intergenic
AAACGTAATGGAACTTTAGT+TGG 0.382677 6_1:+79138647 None:intergenic
TAGGTGGGATATTAGTTGTT+TGG 0.387739 6_1:-79139976 Msa0894040:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6_1:+79140654 None:intergenic
CATACTTGGAATGTTATATG+AGG 0.398446 6_1:-79138760 Msa0894040:CDS
AGGACATGTTGCTTCATACT+TGG 0.399041 6_1:-79138774 Msa0894040:CDS
ATATAAATGAGGAATGTCTT+AGG 0.410838 6_1:-79138670 Msa0894040:CDS
TCGCAAGAGAAGGACTCAAT+TGG 0.412353 6_1:+79140749 None:intergenic
AAAAGAAAATTGACAATGCT+TGG 0.419595 6_1:-79138697 Msa0894040:CDS
TAGAGAAACTTCATGTAATC+CGG 0.427919 6_1:+79139945 None:intergenic
GTTTCTCTATAAACCACTCT+TGG 0.439981 6_1:-79139931 Msa0894040:CDS
GTAGGTCTTCATTAGTCCTT+CGG 0.442180 6_1:+79138553 None:intergenic
ATTGACTCAATATGTCGTTT+GGG 0.443010 6_1:-79141771 Msa0894040:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6_1:-79139181 Msa0894040:CDS
CACAAATGATATCTTCAATT+GGG 0.456797 6_1:-79139148 Msa0894040:CDS
ACTACTCTGTCCCGTGCATA+AGG 0.457542 6_1:+79140413 None:intergenic
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_1:-79139180 Msa0894040:CDS
TTCCTTGCTTGACAATATTG+AGG 0.465049 6_1:+79140353 None:intergenic
GCTCCAAAACCTACATCAAA+AGG 0.468120 6_1:-79140587 Msa0894040:CDS
GAGCAAGAAGTGAAGAAAGA+AGG 0.476258 6_1:-79139891 Msa0894040:CDS
ACCAAAATCAATGCTCATGT+TGG 0.476318 6_1:+79138503 None:intergenic
AGATGTATTCAACCAATTCA+AGG 0.477088 6_1:-79140920 Msa0894040:CDS
GCCTCGCATATGATGATTCA+TGG 0.478503 6_1:-79140832 Msa0894040:CDS
CGCAAGAGAAGGACTCAATT+GGG 0.484801 6_1:+79140750 None:intergenic
CCAAAATCAATGCTCATGTT+GGG 0.485248 6_1:+79138504 None:intergenic
AACATTGATCATAGATGTTG+AGG 0.512550 6_1:-79140875 Msa0894040:CDS
AACAATATCAAGTGGTTACC+CGG 0.513550 6_1:-79139211 Msa0894040:CDS
ATCAATGCTCATGTTGGGAT+GGG 0.522554 6_1:+79138509 None:intergenic
CATGGTCTTTACGTTTCACC+TGG 0.523602 6_1:-79141615 Msa0894040:intron
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6_1:-79140453 Msa0894040:intron
AGCCTCAATATTGTCAAGCA+AGG 0.528176 6_1:-79140355 Msa0894040:CDS
AATCAATGCTCATGTTGGGA+TGG 0.533171 6_1:+79138508 None:intergenic
TGGCCTCACTCATGTAAGCT+TGG 0.536408 6_1:+79139286 None:intergenic
ATCAAGTGGTTACCCGGTGT+TGG 0.539295 6_1:-79139205 Msa0894040:CDS
GATTTCCACCCTAGCGTTTG+GGG 0.542721 6_1:-79142371 Msa0894040:CDS
TTGTCAAGCAAGGAAAATGA+TGG 0.545763 6_1:-79140345 Msa0894040:CDS
TAGCTTCTTGCCTCTAGCCT+AGG 0.554871 6_1:+79140682 None:intergenic
ATACTTGGAATGTTATATGA+GGG 0.559157 6_1:-79138759 Msa0894040:CDS
TTGACTTGTGTCGCAAGAGA+AGG 0.560387 6_1:+79140739 None:intergenic
GGAATTTGATATAAATATTG+CGG 0.567112 6_1:-79141874 Msa0894040:CDS
CTTGCGACACAAGTCAAACA+TGG 0.567322 6_1:-79140733 Msa0894040:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.568035 6_1:-79141633 Msa0894040:CDS
GACGAGCAAATCATTAATGT+AGG 0.569159 6_1:+79138535 None:intergenic
CTGTGCTATTTAGGGTGTTG+AGG 0.569842 6_1:-79141641 Msa0894040:CDS
AATGGAGAAATAACTCTCAA+AGG 0.571243 6_1:-79141681 Msa0894040:CDS
ATAGCACAGCAATAGAATGA+AGG 0.574698 6_1:+79141655 None:intergenic
TTGGCTACGACTTCTTACAT+TGG 0.575246 6_1:-79139186 Msa0894040:CDS
AAGCTTACATGAGTGAGGCC+AGG 0.576657 6_1:-79139284 Msa0894040:CDS
ATTAAGTTGACTTTCTTCAA+CGG 0.581942 6_1:+79141792 None:intergenic
TAAGAAGTCGTAGCCAACAC+CGG 0.589439 6_1:+79139192 None:intergenic
ATTGGGTTGCAATTGACTCA+AGG 0.589709 6_1:+79140767 None:intergenic
AAGAAGTCGTAGCCAACACC+GGG 0.590372 6_1:+79139193 None:intergenic
ACCAAAGATTCTGAAGCATA+CGG 0.593001 6_1:+79142335 None:intergenic
AACACATCAACAATATCAAG+TGG 0.595383 6_1:-79139219 Msa0894040:CDS
ACATTGATCATAGATGTTGA+GGG 0.599537 6_1:-79140874 Msa0894040:CDS
GACGACACGTATGATGCATA+CGG 0.603543 6_1:-79140293 Msa0894040:CDS
TTTCCACCCTAGCGTTTGGG+GGG 0.604138 6_1:-79142369 Msa0894040:CDS
TAATGAAATTCTACTTACGT+TGG 0.604203 6_1:-79140629 Msa0894040:CDS
AACCAATTCAAGGACAAGCA+AGG 0.604565 6_1:-79140910 Msa0894040:CDS
TCTTCATAAACATCCAAGAG+TGG 0.606426 6_1:+79139918 None:intergenic
CTTTATATATAGGTGGTGGA+AGG 0.614852 6_1:-79140459 Msa0894040:intron
ATTTCCACCCTAGCGTTTGG+GGG 0.619288 6_1:-79142370 Msa0894040:CDS
AAACCTCAATAAAACGCGAA+AGG 0.623927 6_1:+79138606 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 6_1:-79138681 Msa0894040:CDS
ACCATGAATCATCATATGCG+AGG 0.651705 6_1:+79140831 None:intergenic
ATAGTTAACATTCAACCACC+TGG 0.654774 6_1:+79139266 None:intergenic
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6_1:-79139073 Msa0894040:intron
AGTCCAAGCTTACATGAGTG+AGG 0.665674 6_1:-79139289 Msa0894040:CDS
GATAACTACACACATTCCGA+AGG 0.666041 6_1:-79138569 Msa0894040:CDS
CTTACATGAGTGAGGCCAGG+TGG 0.678940 6_1:-79139281 Msa0894040:CDS
TAACTATATACCAACAACAG+AGG 0.706002 6_1:-79139250 Msa0894040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTAATTTTGATCA+TGG - chr6_1:79139484-79139503 Msa0894040:intron 10.0%
!!! AATTTTTTAATTTTGATCAT+GGG - chr6_1:79139485-79139504 Msa0894040:intron 10.0%
!!! TAATTGTTTTTACATAAAAT+AGG - chr6_1:79139644-79139663 Msa0894040:intron 10.0%
!!! ATTTAATTTTAAATTAAGGA+GGG + chr6_1:79140406-79140425 None:intergenic 10.0%
!!! AATTTAATTTTAAATTAAGG+AGG + chr6_1:79140407-79140426 None:intergenic 10.0%
!!! TTATAATGAAAATGAATTTT+AGG - chr6_1:79140935-79140954 Msa0894040:intron 10.0%
!! ATATTTATGAAAAGTGATTA+AGG - chr6_1:79138682-79138701 Msa0894040:CDS 15.0%
!! GAATCATTAATATAAATAAG+TGG + chr6_1:79139352-79139371 None:intergenic 15.0%
!!! ATTTTTTAATTTTGATCATG+GGG - chr6_1:79139486-79139505 Msa0894040:intron 15.0%
!!! TAATATAAACCTCTAAAAAA+TGG - chr6_1:79139515-79139534 Msa0894040:intron 15.0%
!!! TTTTTGTTACTAAAAATGTA+AGG + chr6_1:79139553-79139572 None:intergenic 15.0%
!! TGATTATGAAGTAATATTAA+CGG - chr6_1:79139795-79139814 Msa0894040:intron 15.0%
!! ATAAAGACCAAAAATATTAT+AGG + chr6_1:79140457-79140476 None:intergenic 15.0%
!!! TATTTTTGGTCTTTATATAT+AGG - chr6_1:79140461-79140480 Msa0894040:intron 15.0%
!!! ATTAAATAATAACTTTTAGG+TGG - chr6_1:79140817-79140836 Msa0894040:CDS 15.0%
!! TCTTATCATATATTTATACA+CGG - chr6_1:79140878-79140897 Msa0894040:CDS 15.0%
!! TTGAACAAAAGATTATATAT+TGG - chr6_1:79141476-79141495 Msa0894040:intron 15.0%
!! CATATTTACAAAAAATACAT+AGG - chr6_1:79141554-79141573 Msa0894040:intron 15.0%
!! AATATAGTAGTATTGTTAAT+AGG + chr6_1:79141595-79141614 None:intergenic 15.0%
!! AATATAATAAGATGACATAA+TGG - chr6_1:79142028-79142047 Msa0894040:intron 15.0%
!! GTAAAAAGATCCTATATTAT+TGG + chr6_1:79138977-79138996 None:intergenic 20.0%
!! GGAATTTGATATAAATATTG+CGG - chr6_1:79139056-79139075 Msa0894040:intron 20.0%
!! GCAAATTGATAAACTAAAAA+AGG - chr6_1:79139080-79139099 Msa0894040:CDS 20.0%
!! AATTGATAAACTAAAAAAGG+AGG - chr6_1:79139083-79139102 Msa0894040:CDS 20.0%
!!! AAAGTATTAATTTGACGATT+AGG + chr6_1:79139453-79139472 None:intergenic 20.0%
!!! ATACTTAAACCATTTTTTAG+AGG + chr6_1:79139527-79139546 None:intergenic 20.0%
!!! TGTTTTTACATAAAATAGGA+AGG - chr6_1:79139648-79139667 Msa0894040:intron 20.0%
!!! GTTTTTACATAAAATAGGAA+GGG - chr6_1:79139649-79139668 Msa0894040:intron 20.0%
!! TGAAGTAATATTTATGGTTT+AGG - chr6_1:79139818-79139837 Msa0894040:intron 20.0%
!!! CTAATTGCCTATAATATTTT+TGG - chr6_1:79140447-79140466 Msa0894040:CDS 20.0%
!!! GTTTTTCTATCTCTAAATTT+TGG + chr6_1:79140752-79140771 None:intergenic 20.0%
!!! TAATGAAAATGAATTTTAGG+TGG - chr6_1:79140938-79140957 Msa0894040:intron 20.0%
!!! AATGAAAATGAATTTTAGGT+GGG - chr6_1:79140939-79140958 Msa0894040:intron 20.0%
!!! TGTTATCAGAATGAAATTTT+AGG - chr6_1:79141187-79141206 Msa0894040:intron 20.0%
!!! TTTTGTTGAACTATTATCTA+CGG + chr6_1:79141514-79141533 None:intergenic 20.0%
!!! ATTGTTCATTTTTGTAAACA+AGG - chr6_1:79141946-79141965 Msa0894040:intron 20.0%
!! CTTATTATATTAACTCTTGA+CGG + chr6_1:79142019-79142038 None:intergenic 20.0%
! TGTTGTTCACGTAAAAAAAA+GGG + chr6_1:79138633-79138652 None:intergenic 25.0%
!! TTGTTGTTCACGTAAAAAAA+AGG + chr6_1:79138634-79138653 None:intergenic 25.0%
! ATTGCTAAAAAATAACCCTT+TGG + chr6_1:79138787-79138806 None:intergenic 25.0%
!!! AAGGGTTATTTTTTAGCAAT+AGG - chr6_1:79138787-79138806 Msa0894040:CDS 25.0%
! TATTAATTATACGATCCAAG+TGG + chr6_1:79138868-79138887 None:intergenic 25.0%
! GCAATGTTAGTAATATTAAG+CGG + chr6_1:79138893-79138912 None:intergenic 25.0%
! TTCAAGAATGCCAATAATAT+AGG - chr6_1:79138964-79138983 Msa0894040:intron 25.0%
!!! ATTAAGTTGACTTTCTTCAA+CGG + chr6_1:79139141-79139160 None:intergenic 25.0%
!! AGACGAAATTAATCAAGTTT+TGG - chr6_1:79139200-79139219 Msa0894040:CDS 25.0%
! TAACGGTGAAGTAATATTTA+TGG - chr6_1:79139812-79139831 Msa0894040:intron 25.0%
! CGTAAGTAGAATTTCATTAT+GGG + chr6_1:79140300-79140319 None:intergenic 25.0%
! ACGTAAGTAGAATTTCATTA+TGG + chr6_1:79140301-79140320 None:intergenic 25.0%
! TAATGAAATTCTACTTACGT+TGG - chr6_1:79140301-79140320 Msa0894040:CDS 25.0%
!!! TTTTGGTCTTTATATATAGG+TGG - chr6_1:79140464-79140483 Msa0894040:intron 25.0%
!! TGAGTTAGAACTTTTTACTA+AGG - chr6_1:79140669-79140688 Msa0894040:CDS 25.0%
!! TTTTTACTAAGGCAATTGAA+AGG - chr6_1:79140680-79140699 Msa0894040:CDS 25.0%
!! GTCTAATTTTGTCAACAAAA+GGG - chr6_1:79140900-79140919 Msa0894040:CDS 25.0%
!!! TTCTTTTAAGAAGTGGTTAA+TGG + chr6_1:79141076-79141095 None:intergenic 25.0%
!!! CTATATTTTTGAACTGTCAT+TGG + chr6_1:79141623-79141642 None:intergenic 25.0%
! CACAAATGATATCTTCAATT+GGG - chr6_1:79141782-79141801 Msa0894040:CDS 25.0%
! ATTTCACACAATATTCTTTG+TGG - chr6_1:79141903-79141922 Msa0894040:intron 25.0%
! ATACTTGGAATGTTATATGA+GGG - chr6_1:79142171-79142190 Msa0894040:intron 25.0%
! TTATATGAGGGAATATGATA+TGG - chr6_1:79142183-79142202 Msa0894040:intron 25.0%
!!! AAGCATTGTCAATTTTCTTT+TGG + chr6_1:79142234-79142253 None:intergenic 25.0%
! AAAAGAAAATTGACAATGCT+TGG - chr6_1:79142233-79142252 Msa0894040:intron 25.0%
! ATATAAATGAGGAATGTCTT+AGG - chr6_1:79142260-79142279 Msa0894040:intron 25.0%
GAATAAAACCAAGAGAAAGT+AGG - chr6_1:79138742-79138761 Msa0894040:CDS 30.0%
GCAATGTGTAATATCTATGT+TGG + chr6_1:79138838-79138857 None:intergenic 30.0%
!!! TGCATGTTTTGATTACATAC+AGG - chr6_1:79139035-79139054 Msa0894040:intron 30.0%
! AATTGACTCAATATGTCGTT+TGG - chr6_1:79139158-79139177 Msa0894040:CDS 30.0%
! ATTGACTCAATATGTCGTTT+GGG - chr6_1:79139159-79139178 Msa0894040:CDS 30.0%
!!! AGTTTTGGAAGATATTCACA+AGG - chr6_1:79139215-79139234 Msa0894040:CDS 30.0%
! CACAAGGATTTTGTTCAAAA+TGG - chr6_1:79139231-79139250 Msa0894040:CDS 30.0%
AATGGAGAAATAACTCTCAA+AGG - chr6_1:79139249-79139268 Msa0894040:CDS 30.0%
!! ATTCTATTGCTGTGCTATTT+AGG - chr6_1:79139280-79139299 Msa0894040:CDS 30.0%
!! TTCTATTGCTGTGCTATTTA+GGG - chr6_1:79139281-79139300 Msa0894040:CDS 30.0%
TAAGTGGAGATATAAATACC+AGG + chr6_1:79139336-79139355 None:intergenic 30.0%
TTGAGTAAAACAAACTTGTG+TGG - chr6_1:79139400-79139419 Msa0894040:intron 30.0%
!! GGATAATGGGTTGTTTAATA+TGG + chr6_1:79139692-79139711 None:intergenic 30.0%
GTAATATTTATGGTTTAGGC+CGG - chr6_1:79139822-79139841 Msa0894040:intron 30.0%
AAGGTTCTTCCTAAATAAGA+TGG + chr6_1:79139864-79139883 None:intergenic 30.0%
!! GTGTTTCTAAAGTACGAAAA+AGG + chr6_1:79139883-79139902 None:intergenic 30.0%
AGATGTATTCAACCAATTCA+AGG - chr6_1:79140010-79140029 Msa0894040:intron 30.0%
AACATTGATCATAGATGTTG+AGG - chr6_1:79140055-79140074 Msa0894040:intron 30.0%
ACATTGATCATAGATGTTGA+GGG - chr6_1:79140056-79140075 Msa0894040:intron 30.0%
! GATTCATGGTGAGAAAATTT+TGG - chr6_1:79140112-79140131 Msa0894040:intron 30.0%
! ATTCCTTTTGATGTAGGTTT+TGG + chr6_1:79140349-79140368 None:intergenic 30.0%
AACCTACATCAAAAGGAATT+TGG - chr6_1:79140350-79140369 Msa0894040:CDS 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6_1:79140355-79140374 None:intergenic 30.0%
! ATTTTAAATTAAGGAGGGTG+TGG + chr6_1:79140401-79140420 None:intergenic 30.0%
CTAAAAAACTACCTTATGCA+CGG - chr6_1:79140506-79140525 Msa0894040:intron 30.0%
TAAAAAACTACCTTATGCAC+GGG - chr6_1:79140507-79140526 Msa0894040:intron 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6_1:79140534-79140553 Msa0894040:intron 30.0%
GTCGTCAATGTATGATAAAA+TGG + chr6_1:79140623-79140642 None:intergenic 30.0%
! GGTCTAATTTTGTCAACAAA+AGG - chr6_1:79140899-79140918 Msa0894040:CDS 30.0%
TAGAGAAACTTCATGTAATC+CGG + chr6_1:79140988-79141007 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+TGG + chr6_1:79141083-79141102 None:intergenic 30.0%
CTATGTATCTATACGAAGAA+TGG + chr6_1:79141226-79141245 None:intergenic 30.0%
TTCTAATCACAAGATATGCT+AGG + chr6_1:79141251-79141270 None:intergenic 30.0%
CAAAAAATACATAGGAGTTC+AGG - chr6_1:79141562-79141581 Msa0894040:intron 30.0%
TAACTATATACCAACAACAG+AGG - chr6_1:79141680-79141699 Msa0894040:CDS 30.0%
AACACATCAACAATATCAAG+TGG - chr6_1:79141711-79141730 Msa0894040:CDS 30.0%
CCAATTGAAGATATCATTTG+TGG + chr6_1:79141784-79141803 None:intergenic 30.0%
CCACAAATGATATCTTCAAT+TGG - chr6_1:79141781-79141800 Msa0894040:CDS 30.0%
CATACTTGGAATGTTATATG+AGG - chr6_1:79142170-79142189 Msa0894040:intron 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG + chr6_1:79142221-79142240 None:intergenic 30.0%
TGCTTGGAAAGATATAAATG+AGG - chr6_1:79142249-79142268 Msa0894040:intron 30.0%
! AAACGTAATGGAACTTTAGT+TGG + chr6_1:79142286-79142305 None:intergenic 30.0%
!! ACCAAAGATTCTGAAGCATA+CGG + chr6_1:79138598-79138617 None:intergenic 35.0%
TTAGCAATAGGAATGAAACC+TGG - chr6_1:79138799-79138818 Msa0894040:intron 35.0%
AATTATACGATCCAAGTGGT+TGG + chr6_1:79138864-79138883 None:intergenic 35.0%
ACTAACATTGCACACTCATA+AGG - chr6_1:79138902-79138921 Msa0894040:intron 35.0%
ATAGCACAGCAATAGAATGA+AGG + chr6_1:79139278-79139297 None:intergenic 35.0%
CTGAACATTACACGGATAAT+GGG + chr6_1:79139705-79139724 None:intergenic 35.0%
TCTGAACATTACACGGATAA+TGG + chr6_1:79139706-79139725 None:intergenic 35.0%
AAATAAGATGGCTACCCTAT+AGG + chr6_1:79139852-79139871 None:intergenic 35.0%
! ATAGGGTAGCCATCTTATTT+AGG - chr6_1:79139852-79139871 Msa0894040:intron 35.0%
ATGATTGTTCAACATTGTCG+TGG - chr6_1:79139969-79139988 Msa0894040:CDS 35.0%
!! TGGTGAGAAAATTTTGGAAG+AGG - chr6_1:79140118-79140137 Msa0894040:intron 35.0%
TCTACTTACGTTGGCAAAAT+TGG - chr6_1:79140310-79140329 Msa0894040:CDS 35.0%
TGGTCTTTATATATAGGTGG+TGG - chr6_1:79140467-79140486 Msa0894040:intron 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6_1:79140471-79140490 Msa0894040:intron 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6_1:79140533-79140552 Msa0894040:intron 35.0%
!!! ATGTTGCTTTTGGGTTATGA+CGG - chr6_1:79140543-79140562 Msa0894040:intron 35.0%
TTCCTTGCTTGACAATATTG+AGG + chr6_1:79140580-79140599 None:intergenic 35.0%
TTGTCAAGCAAGGAAAATGA+TGG - chr6_1:79140585-79140604 Msa0894040:CDS 35.0%
TAGGTGGGATATTAGTTGTT+TGG - chr6_1:79140954-79140973 Msa0894040:intron 35.0%
TAGTTGTTTGGATGATCTTC+CGG - chr6_1:79140966-79140985 Msa0894040:intron 35.0%
GTTTCTCTATAAACCACTCT+TGG - chr6_1:79140999-79141018 Msa0894040:intron 35.0%
TCTTCATAAACATCCAAGAG+TGG + chr6_1:79141015-79141034 None:intergenic 35.0%
ATAGTTAACATTCAACCACC+TGG + chr6_1:79141667-79141686 None:intergenic 35.0%
AACAATATCAAGTGGTTACC+CGG - chr6_1:79141719-79141738 Msa0894040:CDS 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_1:79141749-79141768 Msa0894040:CDS 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_1:79141750-79141769 Msa0894040:CDS 35.0%
! GCAGCAGCATTAACAATTTT+CGG + chr6_1:79141819-79141838 None:intergenic 35.0%
AAACAGTTCGAGCAAAAAAG+AGG - chr6_1:79142136-79142155 Msa0894040:intron 35.0%
ACACACGTCAAAAAACGTAA+TGG + chr6_1:79142298-79142317 None:intergenic 35.0%
AAACCTCAATAAAACGCGAA+AGG + chr6_1:79142327-79142346 None:intergenic 35.0%
GACGAGCAAATCATTAATGT+AGG + chr6_1:79142398-79142417 None:intergenic 35.0%
TCCGTATGCTTCAGAATCTT+TGG - chr6_1:79138594-79138613 Msa0894040:CDS 40.0%
! TAGCTCTACCTACTTTCTCT+TGG + chr6_1:79138753-79138772 None:intergenic 40.0%
AGCTATAGCAAACACTCCAA+AGG - chr6_1:79138768-79138787 Msa0894040:CDS 40.0%
GCTATAGCAAACACTCCAAA+GGG - chr6_1:79138769-79138788 Msa0894040:CDS 40.0%
! GGAATGAAACCTGGTGTTTT+AGG - chr6_1:79138808-79138827 Msa0894040:intron 40.0%
GTTGGAAATCCTAAAACACC+AGG + chr6_1:79138820-79138839 None:intergenic 40.0%
AAAATAGGAAGGGTCATCGT+AGG - chr6_1:79139659-79139678 Msa0894040:intron 40.0%
GCGAATAATGTAAAGAACCG+AGG + chr6_1:79139730-79139749 None:intergenic 40.0%
! TTTAGGCCGGTTTACCTATA+GGG - chr6_1:79139835-79139854 Msa0894040:intron 40.0%
AACCAATTCAAGGACAAGCA+AGG - chr6_1:79140020-79140039 Msa0894040:intron 40.0%
TTCCTTGCTTGTCCTTGAAT+TGG + chr6_1:79140025-79140044 None:intergenic 40.0%
ACCATGAATCATCATATGCG+AGG + chr6_1:79140102-79140121 None:intergenic 40.0%
!!! GAGGCATTGACTTTTACTTC+TGG - chr6_1:79140137-79140156 Msa0894040:intron 40.0%
! ATTGGGTTGCAATTGACTCA+AGG + chr6_1:79140166-79140185 None:intergenic 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6_1:79140279-79140298 None:intergenic 40.0%
GCTCCAAAACCTACATCAAA+AGG - chr6_1:79140343-79140362 Msa0894040:CDS 40.0%
AGCCTCAATATTGTCAAGCA+AGG - chr6_1:79140575-79140594 Msa0894040:CDS 40.0%
GAGCAAGAAGTGAAGAAAGA+AGG - chr6_1:79141039-79141058 Msa0894040:intron 40.0%
TTCATGTACTCCTCTGTTGT+TGG + chr6_1:79141693-79141712 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_1:79141744-79141763 Msa0894040:CDS 40.0%
! AGGACATGTTGCTTCATACT+TGG - chr6_1:79142156-79142175 Msa0894040:intron 40.0%
!! CAACCTTTCGCGTTTTATTG+AGG - chr6_1:79142321-79142340 Msa0894040:intron 40.0%
GATAACTACACACATTCCGA+AGG - chr6_1:79142361-79142380 Msa0894040:CDS 40.0%
GTAGGTCTTCATTAGTCCTT+CGG + chr6_1:79142380-79142399 None:intergenic 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6_1:79138558-79138577 Msa0894040:CDS 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6_1:79139289-79139308 Msa0894040:CDS 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6_1:79139297-79139316 Msa0894040:CDS 45.0%
CATGGTCTTTACGTTTCACC+TGG - chr6_1:79139315-79139334 Msa0894040:intron 45.0%
CCGAGGATCTGAACATTACA+CGG + chr6_1:79139713-79139732 None:intergenic 45.0%
CCGTGTAATGTTCAGATCCT+CGG - chr6_1:79139710-79139729 Msa0894040:intron 45.0%
! GTTTAGGCCGGTTTACCTAT+AGG - chr6_1:79139834-79139853 Msa0894040:intron 45.0%
TGGCTACCCTATAGGTAAAC+CGG + chr6_1:79139844-79139863 None:intergenic 45.0%
GCCTCGCATATGATGATTCA+TGG - chr6_1:79140098-79140117 Msa0894040:intron 45.0%
CGCAAGAGAAGGACTCAATT+GGG + chr6_1:79140183-79140202 None:intergenic 45.0%
TCGCAAGAGAAGGACTCAAT+TGG + chr6_1:79140184-79140203 None:intergenic 45.0%
!! TTGACTTGTGTCGCAAGAGA+AGG + chr6_1:79140194-79140213 None:intergenic 45.0%
CTTGCGACACAAGTCAAACA+TGG - chr6_1:79140197-79140216 Msa0894040:intron 45.0%
! CTAGGCAAGTTTTTGCGAAG+AGG + chr6_1:79140233-79140252 None:intergenic 45.0%
CTCTTCGCAAAAACTTGCCT+AGG - chr6_1:79140231-79140250 Msa0894040:intron 45.0%
CAAAAACTTGCCTAGGCTAG+AGG - chr6_1:79140238-79140257 Msa0894040:intron 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6_1:79140477-79140496 Msa0894040:intron 45.0%
GACGACACGTATGATGCATA+CGG - chr6_1:79140637-79140656 Msa0894040:CDS 45.0%
AGTCCAAGCTTACATGAGTG+AGG - chr6_1:79141641-79141660 Msa0894040:CDS 45.0%
TAAGAAGTCGTAGCCAACAC+CGG + chr6_1:79141741-79141760 None:intergenic 45.0%
TGCTGTTCATTGCAGGCTTA+GGG - chr6_1:79141836-79141855 Msa0894040:CDS 45.0%
GGATGAAATTGTGTCTAGCG+AGG - chr6_1:79141857-79141876 Msa0894040:CDS 45.0%
!!! TCATTTTTTATATTTTAATT+TGG - chr6_1:79139370-79139389 Msa0894040:intron 5.0%
!!! TTCAATTTAATTTTAAATTA+AGG + chr6_1:79140410-79140429 None:intergenic 5.0%
!!! AAAATTAAATAATAACTTTT+AGG - chr6_1:79140814-79140833 Msa0894040:CDS 5.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6_1:79138557-79138576 Msa0894040:CDS 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6_1:79138559-79138578 Msa0894040:CDS 50.0%
ATTTCCACCCTAGCGTTTGG+GGG - chr6_1:79138560-79138579 Msa0894040:CDS 50.0%
CACATTGCACACCAACCACT+TGG - chr6_1:79138850-79138869 Msa0894040:intron 50.0%
AGGAAGGGTCATCGTAGGAT+CGG - chr6_1:79139664-79139683 Msa0894040:intron 50.0%
TAGCTTCTTGCCTCTAGCCT+AGG + chr6_1:79140251-79140270 None:intergenic 50.0%
ACTACTCTGTCCCGTGCATA+AGG + chr6_1:79140520-79140539 None:intergenic 50.0%
TGGCCTCACTCATGTAAGCT+TGG + chr6_1:79141647-79141666 None:intergenic 50.0%
AAGCTTACATGAGTGAGGCC+AGG - chr6_1:79141646-79141665 Msa0894040:CDS 50.0%
ATCAAGTGGTTACCCGGTGT+TGG - chr6_1:79141725-79141744 Msa0894040:CDS 50.0%
AAGAAGTCGTAGCCAACACC+GGG + chr6_1:79141740-79141759 None:intergenic 50.0%
ATGCTGCTGCTGTTCATTGC+AGG - chr6_1:79141829-79141848 Msa0894040:CDS 50.0%
CTGCTGTTCATTGCAGGCTT+AGG - chr6_1:79141835-79141854 Msa0894040:CDS 50.0%
TTTCCACCCTAGCGTTTGGG+GGG - chr6_1:79138561-79138580 Msa0894040:CDS 55.0%
AGAAGTCCCCCCAAACGCTA+GGG + chr6_1:79138570-79138589 None:intergenic 55.0%
AAGAAGTCCCCCCAAACGCT+AGG + chr6_1:79138571-79138590 None:intergenic 55.0%
CTTACATGAGTGAGGCCAGG+TGG - chr6_1:79141649-79141668 Msa0894040:CDS 55.0%
AGTCCCCCCAAACGCTAGGG+TGG + chr6_1:79138567-79138586 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 79138517 79142435 79138517 ID=Msa0894040;Name=Msa0894040
chr6_1 mRNA 79138517 79142435 79138517 ID=Msa0894040-mRNA-1;Parent=Msa0894040;Name=Msa0894040-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|7|0|550
chr6_1 exon 79142337 79142435 79142337 ID=Msa0894040-mRNA-1:exon:13264;Parent=Msa0894040-mRNA-1
chr6_1 exon 79141616 79141895 79141616 ID=Msa0894040-mRNA-1:exon:13263;Parent=Msa0894040-mRNA-1
chr6_1 exon 79140568 79140940 79140568 ID=Msa0894040-mRNA-1:exon:13262;Parent=Msa0894040-mRNA-1
chr6_1 exon 79140251 79140469 79140251 ID=Msa0894040-mRNA-1:exon:13261;Parent=Msa0894040-mRNA-1
chr6_1 exon 79139857 79139995 79139857 ID=Msa0894040-mRNA-1:exon:13260;Parent=Msa0894040-mRNA-1
chr6_1 exon 79139074 79139322 79139074 ID=Msa0894040-mRNA-1:exon:13259;Parent=Msa0894040-mRNA-1
chr6_1 exon 79138517 79138810 79138517 ID=Msa0894040-mRNA-1:exon:13258;Parent=Msa0894040-mRNA-1
chr6_1 CDS 79142337 79142435 79142337 ID=Msa0894040-mRNA-1:cds;Parent=Msa0894040-mRNA-1
chr6_1 CDS 79141616 79141895 79141616 ID=Msa0894040-mRNA-1:cds;Parent=Msa0894040-mRNA-1
chr6_1 CDS 79140568 79140940 79140568 ID=Msa0894040-mRNA-1:cds;Parent=Msa0894040-mRNA-1
chr6_1 CDS 79140251 79140469 79140251 ID=Msa0894040-mRNA-1:cds;Parent=Msa0894040-mRNA-1
chr6_1 CDS 79139857 79139995 79139857 ID=Msa0894040-mRNA-1:cds;Parent=Msa0894040-mRNA-1
chr6_1 CDS 79139074 79139322 79139074 ID=Msa0894040-mRNA-1:cds;Parent=Msa0894040-mRNA-1
chr6_1 CDS 79138517 79138810 79138517 ID=Msa0894040-mRNA-1:cds;Parent=Msa0894040-mRNA-1
Gene Sequence

>Msa0894040

ATGTCTCATAACGAGAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGAATTTGATATAAATATTGCGGCGCAAATTGATAAACTAAAAAAGGAGGTTAGACAAATGATTGTCTCAAAAATTGAGAATCCGTTGAAGAAAGTCAACTTAATTGACTCAATATGTCGTTTGGGTGTGAGCTATTATTTTGAAGACGAAATTAATCAAGTTTTGGAAGATATTCACAAGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGCAACCTTCATTCTATTGCTGTGCTATTTAGGGTGTTGAGGCAACATGGTCTTTACGTTTCACCTGATGTATTCAACCAATTCAAGGACAAGCAAGGAAATTTTAGTGAAACATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCGCATATGATGATTCATGGTGAGAAAATTTTGGAAGAGGCATTGACTTTTACTTCTGGTCTCCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGACACAAGTCAAACATGGCTTAAGACATCCTCTTCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAACCTACATCAAAAGGAATTTGGAAACATTTGCAAGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAATGATGGCAAAAGTAATCTCCATTTTATCATACATTGACGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGCAATTGAAAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATAGAGCAAGAAGTGAAGAAAGAAGGAAGATTATACGCCATTAACCACTTCTTAAAAGAATTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAACTATATACCAACAACAGAGGAGTACATGAACACATCAACAATATCAAGTGGTTACCCGGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCCACAAATGATATCTTCAATTGGGTAACTAACAATCCGAAAATTGTTAATGCTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCGAGTTCGAGCAAAAAAGAGGACATGTTGCTTCATACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTACGTTTTTTGACGTGTGTTCTCAACCTTTCGCGTTTTATTGAGGTTTTTTACAAAGATGAAGATAACTACACACATTCCGAAGGACTAATGAAGACCTACATTAATGATTTGCTCGTCAATCCCATCCCAACATGA
Protein sequence

>Msa0894040

MSHNEKSVLQRNVADFHPSVWGDFFIPYASESLEFDINIAAQIDKLKKEVRQMIVSKIENPLKKVNLIDSICRLGVSYYFEDEINQVLEDIHKDFVQNGEITLKGNLHSIAVLFRVLRQHGLYVSPDVFNQFKDKQGNFSETLIIDVEGMLNLYEASHMMIHGEKILEEALTFTSGLLESIATQLSPSLATQVKHGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQNLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKMMAKVISILSYIDDTYDAYGTIDELELFTKAIERWDISCLDDLPDYMKFLYKPLLDVYEEIEQEVKKEGRLYAINHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPVLATTSYIGMGNIATNDIFNWVTNNPKIVNAAAVHCRLRDEIVSSEFEQKRGHVASYLECYMREYDMDREAAIQECQKKIDNAWKDINEECLRPTKVPLRFLTCVLNLSRFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT*