AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0967190

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967190 MtrunA17_Chr6g0465441 68.670 549 172 0 1 549 4 552 0.0 811
Msa0967190 MtrunA17_Chr7g0236991 68.488 549 173 0 1 549 4 552 0.0 811
Msa0967190 MtrunA17_Chr7g0237001 68.306 549 174 0 1 549 4 552 0.0 810
Msa0967190 MtrunA17_Chr7g0237041 68.306 549 174 0 1 549 4 552 0.0 810
Msa0967190 MtrunA17_Chr7g0237081 68.306 549 174 0 1 549 4 552 0.0 810
Msa0967190 MtrunA17_Chr7g0237051 68.306 549 174 0 1 549 4 552 0.0 810
Msa0967190 MtrunA17_Chr5g0425371 70.556 540 159 0 10 549 13 552 0.0 804
Msa0967190 MtrunA17_Chr6g0465911 68.306 549 174 0 1 549 4 552 0.0 798
Msa0967190 MtrunA17_Chr6g0466051 68.124 549 175 0 1 549 4 552 0.0 796
Msa0967190 MtrunA17_Chr4g0024691 69.301 544 167 0 6 549 17 560 0.0 794
Msa0967190 MtrunA17_Chr6g0451711 67.395 549 178 1 2 549 8 556 0.0 793
Msa0967190 MtrunA17_Chr3g0105071 66.849 549 181 1 1 548 7 555 0.0 777
Msa0967190 MtrunA17_Chr6g0465851 69.246 517 159 0 33 549 1 517 0.0 757
Msa0967190 MtrunA17_Chr3g0082691 65.217 552 189 2 1 549 1 552 0.0 757
Msa0967190 MtrunA17_Chr5g0431571 66.176 544 183 1 6 548 4 547 0.0 746
Msa0967190 MtrunA17_Chr5g0431651 64.610 551 193 2 1 549 1 551 0.0 744
Msa0967190 MtrunA17_Chr7g0236961 69.618 497 151 0 53 549 1 497 0.0 744
Msa0967190 MtrunA17_Chr7g0237011 69.618 497 151 0 53 549 1 497 0.0 744
Msa0967190 MtrunA17_Chr4g0042111 58.212 548 226 2 4 549 15 561 0.0 668
Msa0967190 MtrunA17_Chr7g0236971 69.500 400 122 0 150 549 1 400 0.0 604
Msa0967190 MtrunA17_Chr6g0465981 68.919 370 115 0 1 370 4 373 0.0 545
Msa0967190 MtrunA17_Chr6g0465871 68.919 370 115 0 1 370 4 373 0.0 545
Msa0967190 MtrunA17_Chr6g0466081 68.919 370 115 0 1 370 4 373 0.0 545
Msa0967190 MtrunA17_Chr6g0466111 70.414 338 100 0 33 370 1 338 4.96e-177 502
Msa0967190 MtrunA17_Chr6g0465931 70.118 338 101 0 33 370 1 338 5.23e-176 500
Msa0967190 MtrunA17_Chr2g0319041 45.055 546 292 7 9 548 12 555 2.26e-173 501
Msa0967190 MtrunA17_Chr8g0336181 45.803 548 289 6 7 548 9 554 1.72e-170 494
Msa0967190 MtrunA17_Chr7g0236951 70.794 315 92 0 53 367 1 315 7.06e-169 481
Msa0967190 MtrunA17_Chr7g0237031 70.794 315 92 0 53 367 1 315 2.13e-168 479
Msa0967190 MtrunA17_Chr2g0319051 45.205 511 274 6 42 548 4 512 1.22e-163 475
Msa0967190 MtrunA17_Chr4g0008621 45.500 400 214 4 9 404 19 418 5.48e-124 371
Msa0967190 MtrunA17_Chr6g0466031 65.637 259 89 0 291 549 1 259 8.95e-122 358
Msa0967190 MtrunA17_Chr5g0445511 67.782 239 77 0 145 383 1 239 4.32e-119 351
Msa0967190 MtrunA17_Chr2g0319071 37.718 517 272 10 38 550 19 489 2.13e-115 351
Msa0967190 MtrunA17_Chr4g0023911 34.615 546 346 4 7 548 41 579 3.57e-114 350
Msa0967190 MtrunA17_Chr2g0323131 36.117 515 306 9 43 550 67 565 1.93e-108 335
Msa0967190 MtrunA17_Chr7g0237061 61.004 259 78 2 291 549 1 236 6.02e-108 322
Msa0967190 MtrunA17_Chr2g0310331 36.464 543 331 9 11 549 53 585 1.20e-107 334
Msa0967190 MtrunA17_Chr2g0323151 35.583 489 298 5 65 549 4 479 8.78e-105 323
Msa0967190 MtrunA17_Chr8g0357411 33.575 551 357 5 1 549 45 588 7.16e-98 308
Msa0967190 MtrunA17_Chr7g0237071 69.307 202 62 0 53 254 1 202 8.11e-95 288
Msa0967190 MtrunA17_Chr6g0466021 66.162 198 67 0 1 198 4 201 2.41e-91 278
Msa0967190 MtrunA17_Chr4g0048921 32.233 515 336 6 38 548 64 569 2.61e-86 278
Msa0967190 MtrunA17_Chr4g0048911 30.952 546 365 9 2 542 18 556 2.12e-85 275
Msa0967190 MtrunA17_Chr7g0237021 68.421 171 54 0 379 549 1 171 7.63e-84 258
Msa0967190 MtrunA17_Chr7g0236941 68.421 171 54 0 379 549 1 171 7.63e-84 258
Msa0967190 MtrunA17_Chr6g0465941 66.667 171 57 0 379 549 1 171 1.95e-79 246
Msa0967190 MtrunA17_Chr6g0466121 66.667 171 57 0 379 549 1 171 1.95e-79 246
Msa0967190 MtrunA17_Chr6g0465991 66.667 171 57 0 379 549 1 171 1.95e-79 246
Msa0967190 MtrunA17_Chr6g0466091 66.667 171 57 0 379 549 1 171 1.95e-79 246
Msa0967190 MtrunA17_Chr6g0465881 66.082 171 58 0 379 549 1 171 1.17e-78 244
Msa0967190 MtrunA17_Chr2g0280581 29.658 526 341 10 36 541 2 518 6.22e-76 249
Msa0967190 MtrunA17_Chr2g0319081 40.123 324 175 7 228 548 118 425 2.20e-75 245
Msa0967190 MtrunA17_Chr2g0319081 40.164 122 72 1 9 129 19 140 7.93e-23 101
Msa0967190 MtrunA17_Chr2g0310401 32.944 428 284 2 124 549 5 431 1.67e-73 240
Msa0967190 MtrunA17_Chr5g0445501 61.404 171 66 0 379 549 1 171 1.01e-72 229
Msa0967190 MtrunA17_Chr3g0109001 29.980 497 322 9 48 528 13 499 5.37e-70 233
Msa0967190 MtrunA17_Chr7g0236921 64.331 157 52 1 397 549 1 157 8.65e-70 221
Msa0967190 MtrunA17_Chr3g0108941 29.240 513 335 10 48 544 13 513 1.52e-69 232
Msa0967190 MtrunA17_Chr3g0109021 29.724 508 331 9 36 528 2 498 1.81e-69 232
Msa0967190 MtrunA17_Chr3g0109031 29.084 502 342 8 36 528 2 498 6.41e-69 231
Msa0967190 MtrunA17_Chr6g0477111 30.146 481 312 8 67 532 6 477 1.05e-68 229
Msa0967190 MtrunA17_Chr3g0105691 29.283 502 341 7 36 528 35 531 5.50e-68 229
Msa0967190 MtrunA17_Chr3g0108991 29.331 508 333 9 36 528 2 498 2.04e-67 227
Msa0967190 MtrunA17_Chr3g0108951 29.331 508 333 9 36 528 2 498 2.04e-67 227
Msa0967190 MtrunA17_Chr3g0108981 29.560 477 313 6 67 528 6 474 2.51e-66 223
Msa0967190 MtrunA17_Chr3g0108961 29.560 477 313 6 67 528 6 474 2.51e-66 223
Msa0967190 MtrunA17_Chr7g0236931 62.745 153 54 1 397 549 1 150 1.55e-65 210
Msa0967190 MtrunA17_Chr3g0108971 29.769 477 311 8 67 528 6 473 3.52e-65 220
Msa0967190 MtrunA17_Chr3g0109011 29.560 477 312 8 67 528 6 473 5.35e-65 219
Msa0967190 MtrunA17_Chr3g0099031 29.412 510 337 9 48 544 13 512 4.04e-64 218
Msa0967190 MtrunA17_Chr6g0477121 29.024 410 280 6 127 528 10 416 6.14e-56 193
Msa0967190 MtrunA17_Chr7g0233861 63.704 135 40 1 190 324 33 158 2.18e-52 176
Msa0967190 MtrunA17_Chr7g0236981 60.465 129 51 0 1 129 4 132 7.83e-52 173
Msa0967190 MtrunA17_Chr7g0217361 33.667 300 198 1 249 547 8 307 3.15e-51 177
Msa0967190 MtrunA17_Chr8g0357221 37.143 245 145 4 3 245 47 284 7.30e-43 154
Msa0967190 MtrunA17_Chr5g0445401 72.632 95 22 2 160 251 1 94 1.07e-35 128
Msa0967190 MtrunA17_Chr8g0357231 30.116 259 179 2 292 549 1 258 1.38e-34 131
Msa0967190 MtrunA17_Chr2g0310121 24.225 516 349 15 64 548 275 779 8.51e-33 133
Msa0967190 MtrunA17_Chr5g0445521 66.265 83 28 0 6 88 12 94 8.92e-33 121
Msa0967190 MtrunA17_Chr3g0101681 25.430 523 334 17 64 548 276 780 1.43e-32 132
Msa0967190 MtrunA17_Chr3g0082711 48.696 115 42 1 435 549 1 98 2.30e-32 119
Msa0967190 MtrunA17_Chr7g0259881 28.996 269 161 7 67 307 232 498 3.57e-26 113
Msa0967190 MtrunA17_Chr7g0218001 30.741 270 153 7 67 304 349 616 1.24e-24 108
Msa0967190 MtrunA17_Chr7g0217351 29.493 217 144 5 40 252 62 273 6.86e-22 96.3
Msa0967190 MtrunA17_Chr2g0281651 26.087 276 195 6 227 499 43 312 3.98e-19 89.7
Msa0967190 MtrunA17_Chr7g0218041 31.667 240 137 7 114 328 3 240 2.52e-17 84.3
Msa0967190 MtrunA17_Chr5g0411111 38.889 126 62 5 114 228 3 124 5.23e-14 68.9
Msa0967190 MtrunA17_Chr2g0310411 32.000 125 75 4 2 125 49 164 1.01e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967190 AT5G23960.2 40.110 546 320 5 7 549 3 544 5.12e-151 444
Msa0967190 AT5G23960.1 40.146 548 319 6 7 549 3 546 5.68e-150 442
Msa0967190 AT1G70080.1 38.278 546 327 7 11 548 66 609 9.07e-127 384
Msa0967190 AT3G14490.1 37.912 546 327 7 11 549 60 600 7.07e-122 371
Msa0967190 AT3G14520.1 36.735 539 333 5 16 549 68 603 1.60e-121 370
Msa0967190 AT1G31950.1 36.111 540 335 5 16 549 70 605 3.54e-120 367
Msa0967190 AT3G14540.1 36.920 539 332 4 16 549 65 600 1.24e-119 365
Msa0967190 AT1G31950.3 36.044 541 335 6 16 549 70 606 1.27e-119 366
Msa0967190 AT5G44630.1 35.963 545 338 6 12 548 14 555 1.39e-114 351
Msa0967190 AT1G33750.1 34.831 534 342 4 18 549 73 602 2.46e-113 349
Msa0967190 AT3G32030.1 35.065 539 342 6 16 549 68 603 6.35e-113 348
Msa0967190 AT4G13300.1 36.872 537 328 7 19 548 20 552 1.09e-111 343
Msa0967190 AT3G29410.1 34.807 543 346 6 11 549 64 602 2.24e-111 344
Msa0967190 AT4G20210.1 34.799 546 343 7 11 548 58 598 1.02e-110 343
Msa0967190 AT4G15870.1 34.838 554 335 9 3 548 61 596 4.03e-108 336
Msa0967190 AT3G29190.1 34.766 535 323 9 32 549 75 600 6.23e-108 335
Msa0967190 AT4G20200.1 35.907 518 314 9 42 548 92 602 8.20e-108 335
Msa0967190 AT4G13280.2 36.075 535 331 7 21 548 22 552 1.89e-105 327
Msa0967190 AT3G29410.2 35.000 500 319 4 53 549 1 497 2.87e-105 325
Msa0967190 AT4G20230.1 33.641 541 337 9 19 546 70 601 2.12e-100 316
Msa0967190 AT4G20230.2 33.641 541 337 9 19 546 82 613 4.36e-100 315
Msa0967190 AT3G14540.2 37.444 446 272 3 16 457 65 507 4.63e-100 312
Msa0967190 AT1G31950.2 36.105 457 281 6 16 465 70 522 9.20e-100 312
Msa0967190 AT4G16730.1 31.608 541 353 7 22 549 2 538 1.45e-98 309
Msa0967190 AT3G29110.1 34.615 546 344 9 11 548 55 595 6.73e-98 309
Msa0967190 AT2G23230.2 33.700 546 347 9 10 545 55 595 4.62e-97 307
Msa0967190 AT1G66020.1 32.721 544 357 6 11 548 56 596 3.60e-95 302
Msa0967190 AT4G16730.2 32.121 495 321 5 67 549 1 492 6.52e-95 298
Msa0967190 AT2G23230.1 33.516 546 343 10 10 545 55 590 2.61e-94 300
Msa0967190 AT4G13280.1 34.953 535 307 9 21 548 22 522 2.89e-94 298
Msa0967190 AT1G48800.1 31.319 546 359 9 11 546 63 602 6.16e-92 294
Msa0967190 AT4G16740.1 31.532 555 357 10 6 549 21 563 2.77e-90 288
Msa0967190 AT2G24210.1 31.362 558 364 9 4 549 39 589 6.12e-90 288
Msa0967190 AT1G61680.1 31.893 486 321 3 48 528 77 557 2.56e-87 281
Msa0967190 AT3G25820.1 31.362 558 357 12 9 549 45 593 3.27e-87 281
Msa0967190 AT3G25830.1 31.362 558 357 12 9 549 45 593 3.27e-87 281
Msa0967190 AT3G25810.1 32.937 504 317 9 62 549 98 596 2.37e-86 279
Msa0967190 AT1G61680.2 31.481 486 316 4 48 528 77 550 5.85e-84 272
Msa0967190 AT5G48110.1 37.647 340 207 5 210 548 2 337 3.83e-83 263
Msa0967190 AT1G48820.1 30.983 539 322 11 11 543 63 557 7.61e-81 264
Msa0967190 AT4G16740.2 34.933 375 225 7 6 370 21 386 1.07e-69 229
Msa0967190 AT1G66020.2 34.688 369 232 6 11 373 56 421 8.07e-66 220
Msa0967190 AT3G25820.2 32.642 386 241 8 9 383 45 422 4.03e-65 219
Msa0967190 AT4G16740.4 35.562 329 194 6 6 324 21 341 1.65e-61 207
Msa0967190 AT4G16740.3 35.562 329 194 6 6 324 21 341 1.65e-61 207
Msa0967190 AT3G25820.4 33.945 327 197 8 9 324 45 363 7.86e-56 193
Msa0967190 AT3G25820.3 33.945 327 197 8 9 324 45 363 7.86e-56 193
Msa0967190 AT1G61120.1 24.319 514 345 13 62 548 286 782 1.46e-29 124
Msa0967190 AT1G79460.1 23.314 519 349 19 64 548 274 777 1.92e-26 114
Msa0967190 AT4G02780.1 30.469 256 148 7 67 294 334 587 4.21e-23 104

Find 92 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTACGTTGGCAAAAT+TGG 0.135143 6_3:-96503886 Msa0967190:CDS
ATTCTATTTCTGTGCTATTT+AGG 0.140011 6_3:-96504873 Msa0967190:CDS
TTCTATTTCTGTGCTATTTA+GGG 0.183039 6_3:-96504872 Msa0967190:CDS
CTGCTGTTCATTGCAGGCTT+AGG 0.241228 6_3:-96502374 Msa0967190:CDS
AGCCTACATCAAAAGGAATT+TGG 0.257080 6_3:-96503846 Msa0967190:CDS
ACGTAAGTAGAATTTCATTA+TGG 0.259315 6_3:+96503898 None:intergenic
GATTCATGGTGAGAAAATTT+TGG 0.259321 6_3:-96504084 Msa0967190:CDS
TCCGTATGCTTCAGAATCTT+TGG 0.269105 6_3:-96505883 Msa0967190:intron
GTCATCAATGTATGATAAAA+TGG 0.271835 6_3:+96503576 None:intergenic
ATGCTGCTGCTGTTCATTGC+AGG 0.286868 6_3:-96502380 Msa0967190:CDS
CAGATTTCCACCCTAGCGTT+TGG 0.305039 6_3:-96505920 Msa0967190:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.318717 6_3:-96505919 Msa0967190:CDS
AGACGAAATTAATCAAGTTT+TGG 0.321368 6_3:-96504953 Msa0967190:CDS
TTCCTTGCTTGTCCTTGAAT+TGG 0.334271 6_3:+96504174 None:intergenic
TAGTTGTTTGGATGATCTTC+CGG 0.341349 6_3:-96503246 Msa0967190:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6_3:-96503663 Msa0967190:CDS
TTATATGAGGGAATATGATA+TGG 0.360767 6_3:-96502023 Msa0967190:CDS
CCAATTGAAGATATCATTTG+TGG 0.372281 6_3:+96502428 None:intergenic
TGCTGTTCATTGCAGGCTTA+GGG 0.376798 6_3:-96502373 Msa0967190:CDS
CCACAAATGATATCTTCAAT+TGG 0.377027 6_3:-96502428 Msa0967190:CDS
TTCATGTATTCCTCTGTTGT+TGG 0.377218 6_3:+96502519 None:intergenic
CGTAAGTAGAATTTCATTAT+GGG 0.378944 6_3:+96503899 None:intergenic
AAACGTAATGGAACTTTAGT+TGG 0.382677 6_3:+96501923 None:intergenic
TAGGTGGGATATTAGTTGTT+TGG 0.387739 6_3:-96503258 Msa0967190:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6_3:+96503920 None:intergenic
GATTGACTCAATATGTCGTT+TGG 0.390339 6_3:-96504995 Msa0967190:CDS
CATACTTGGAATGTTATATG+AGG 0.398446 6_3:-96502036 Msa0967190:CDS
AGGACATGTTGCTTCATACT+TGG 0.399041 6_3:-96502050 Msa0967190:CDS
ATATAAATGAGGAATGTCTT+AGG 0.410838 6_3:-96501946 Msa0967190:CDS
TCGCAAGAGAAGGACTCAAT+TGG 0.412353 6_3:+96504015 None:intergenic
AAAAGAAAATTGACAATGCT+TGG 0.419595 6_3:-96501973 Msa0967190:CDS
TAGAGAAACTTCATGTAATC+CGG 0.427919 6_3:+96503227 None:intergenic
GCAAATTGATAAACTAAAAC+AGG 0.437343 6_3:-96505073 Msa0967190:CDS
GTTTCTCTATAAACCACTCT+TGG 0.439981 6_3:-96503213 Msa0967190:CDS
GCTCCAAAGCCTACATCAAA+AGG 0.450495 6_3:-96503853 Msa0967190:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6_3:-96502460 Msa0967190:CDS
CACAAATGATATCTTCAATT+GGG 0.456797 6_3:-96502427 Msa0967190:CDS
ACTACTCTGTCCCGTGCATA+AGG 0.457542 6_3:+96503679 None:intergenic
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_3:-96502459 Msa0967190:CDS
TTCCTTGCTTGACAATATTG+AGG 0.465049 6_3:+96503619 None:intergenic
GCCTCACATATGATGATTCA+TGG 0.465433 6_3:-96504098 Msa0967190:CDS
ATTGACTCAATATGTCGTTT+GGG 0.473862 6_3:-96504994 Msa0967190:CDS
ACCAAAATCAATGCTCATGT+TGG 0.476318 6_3:+96501779 None:intergenic
AGATGTATTCAACCAATTCA+AGG 0.477088 6_3:-96504186 Msa0967190:CDS
GAGCAAGAAGTGAAGAAAGA+AGG 0.477567 6_3:-96503173 Msa0967190:CDS
CGCAAGAGAAGGACTCAATT+GGG 0.484801 6_3:+96504016 None:intergenic
CCAAAATCAATGCTCATGTT+GGG 0.485248 6_3:+96501780 None:intergenic
AACATTGATCATAGATGTTG+AGG 0.512550 6_3:-96504141 Msa0967190:CDS
ATCAATGCTCATGTTGGGAT+GGG 0.522554 6_3:+96501785 None:intergenic
TAAGAAGTCGTAGCCAACAC+TGG 0.522936 6_3:+96502471 None:intergenic
CATGGTCTTTACGTTTCACC+TGG 0.523602 6_3:-96504838 Msa0967190:intron
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6_3:-96503719 Msa0967190:intron
AGCCTCAATATTGTCAAGCA+AGG 0.528176 6_3:-96503621 Msa0967190:CDS
CTGTGCTATTTAGGGTGTTG+AGG 0.528533 6_3:-96504864 Msa0967190:CDS
AATCAATGCTCATGTTGGGA+TGG 0.533171 6_3:+96501784 None:intergenic
TGGCCTCACTCATGTAAGCT+TGG 0.536408 6_3:+96502565 None:intergenic
GATTTCCACCCTAGCGTTTG+GGG 0.542721 6_3:-96505918 Msa0967190:CDS
TTGTCAAGCAAGGAAAATGA+TGG 0.545763 6_3:-96503611 Msa0967190:CDS
TAGCTTCTTGCCTCTAGCCT+AGG 0.554871 6_3:+96503948 None:intergenic
ATACTTGGAATGTTATATGA+GGG 0.559157 6_3:-96502035 Msa0967190:CDS
GACAAGCAAATCATTAATGT+AGG 0.560101 6_3:+96501811 None:intergenic
TTGACTTGTGTCGCAAGAGA+AGG 0.560387 6_3:+96504005 None:intergenic
GGAATTTGATATAAATATTG+CGG 0.567112 6_3:-96505097 Msa0967190:CDS
CTTGCGACACAAGTCAAACA+TGG 0.567322 6_3:-96503999 Msa0967190:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.568035 6_3:-96504856 Msa0967190:CDS
ATCAAGTGGTTACCCAGTGT+TGG 0.570889 6_3:-96502484 Msa0967190:CDS
AATGGAGAAATAACTCTCAA+AGG 0.571243 6_3:-96504904 Msa0967190:CDS
AAGCTTACATGAGTGAGGCC+AGG 0.576657 6_3:-96502563 Msa0967190:CDS
ATAGCACAGAAATAGAATGA+AGG 0.580450 6_3:+96504878 None:intergenic
TTGGCTACGACTTCTTACAT+TGG 0.586299 6_3:-96502465 Msa0967190:CDS
GATGACACGTATGATGCATA+CGG 0.587584 6_3:-96503559 Msa0967190:CDS
ACCAAAGATTCTGAAGCATA+CGG 0.593001 6_3:+96505882 None:intergenic
ATTGGGTTGCAATTGACTCA+AGG 0.594526 6_3:+96504033 None:intergenic
AACACATCAACAATATCAAG+TGG 0.595383 6_3:-96502498 Msa0967190:CDS
TCTTCATAAACATCCAAGAG+TGG 0.597368 6_3:+96503200 None:intergenic
ACATTGATCATAGATGTTGA+GGG 0.599537 6_3:-96504140 Msa0967190:CDS
GACAACTACACACATTCTGA+AGG 0.603730 6_3:-96501845 Msa0967190:CDS
TTTCCACCCTAGCGTTTGGG+GGG 0.604138 6_3:-96505916 Msa0967190:CDS
TAATGAAATTCTACTTACGT+TGG 0.604203 6_3:-96503895 Msa0967190:CDS
AACCAATTCAAGGACAAGCA+AGG 0.604565 6_3:-96504176 Msa0967190:CDS
AAGAAGTCGTAGCCAACACT+GGG 0.613680 6_3:+96502472 None:intergenic
CTTTATATATAGGTGGTGGA+AGG 0.614852 6_3:-96503725 Msa0967190:intron
ATTTCCACCCTAGCGTTTGG+GGG 0.619288 6_3:-96505917 Msa0967190:CDS
AAACCTCAATAAAACGCGAA+AGG 0.623927 6_3:+96501882 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 6_3:-96501957 Msa0967190:CDS
ACCATGAATCATCATATGTG+AGG 0.641340 6_3:+96504097 None:intergenic
ATAGTTAACATTCAACCACC+TGG 0.654774 6_3:+96502545 None:intergenic
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6_3:-96502352 Msa0967190:intron
AGTCCAAGCTTACATGAGTG+AGG 0.665674 6_3:-96502568 Msa0967190:CDS
AATTGATAAACTAAAACAGG+AGG 0.674763 6_3:-96505070 Msa0967190:CDS
CTTACATGAGTGAGGCCAGG+TGG 0.678940 6_3:-96502560 Msa0967190:CDS
TAACTATATACCAACAACAG+AGG 0.696944 6_3:-96502529 Msa0967190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAATTAAAGATATTAA+CGG - chr6_3:96502135-96502154 Msa0967190:intron 10.0%
!! TTGAAAATATATATATTACA+AGG + chr6_3:96502528-96502547 None:intergenic 10.0%
!!! ATTATATTTTTGATATCATT+AGG - chr6_3:96503354-96503373 Msa0967190:intron 10.0%
!!! ATTTAATTTTAAATTAAGGA+GGG + chr6_3:96503963-96503982 None:intergenic 10.0%
!!! AATTTAATTTTAAATTAAGG+AGG + chr6_3:96503964-96503983 None:intergenic 10.0%
!!! ATTAAATAATAACTTTTAGA+TGG - chr6_3:96504356-96504375 Msa0967190:intron 10.0%
!!! TTTTATCATATATTTATACA+CGG - chr6_3:96504419-96504438 Msa0967190:intron 10.0%
!!! TTATAATGAAAATGAATTTT+AGG - chr6_3:96504476-96504495 Msa0967190:intron 10.0%
!! TTTAAAAGAAGATTATATAT+TGG - chr6_3:96505020-96505039 Msa0967190:CDS 10.0%
!! TATATTATGAAAAGTGATTA+AGG - chr6_3:96502226-96502245 Msa0967190:intron 15.0%
!! GAATCATTAATATTAATAAG+TGG + chr6_3:96502952-96502971 None:intergenic 15.0%
!!! TAATTTTTTAACTTTGATCA+TGG - chr6_3:96503083-96503102 Msa0967190:intron 15.0%
!!! AATTTTTTAACTTTGATCAT+GGG - chr6_3:96503084-96503103 Msa0967190:intron 15.0%
!!! TAATATAAACCTCTAAAAAA+TGG - chr6_3:96503114-96503133 Msa0967190:intron 15.0%
!!! ATGATTGATTTACATAAAAT+AGG - chr6_3:96503242-96503261 Msa0967190:CDS 15.0%
!! ATAAAGACCAAAAATATTAT+AGG + chr6_3:96504014-96504033 None:intergenic 15.0%
!!! TATTTTTGGTCTTTATATAT+AGG - chr6_3:96504018-96504037 Msa0967190:CDS 15.0%
!!! TGTTATCAGAATAAAATTTT+AGG - chr6_3:96504728-96504747 Msa0967190:intron 15.0%
!! AATATAGTAGAATTGTTAAT+AGG + chr6_3:96505139-96505158 None:intergenic 15.0%
!! TATTATATTAACTCTTAAGA+CGG + chr6_3:96505564-96505583 None:intergenic 15.0%
!! AATATAATAAGATGACATAA+TGG - chr6_3:96505575-96505594 Msa0967190:intron 15.0%
!! TTGTTCACGTAAAAAAAAAA+GGG + chr6_3:96501909-96501928 None:intergenic 20.0%
!! AAATAAAACCAAGAGAAAAT+AGG - chr6_3:96502286-96502305 Msa0967190:intron 20.0%
!! ATGTGTAATAATATCTATGT+TGG + chr6_3:96502412-96502431 None:intergenic 20.0%
!!! ACACTTAATTGTTATTTGAA+AGG + chr6_3:96502588-96502607 None:intergenic 20.0%
!! GGAATTTGATATAAATATTG+CGG - chr6_3:96502656-96502675 Msa0967190:intron 20.0%
!!! ATTTTTTAACTTTGATCATG+GGG - chr6_3:96503085-96503104 Msa0967190:intron 20.0%
!!! ATACTTAAACCATTTTTTAG+AGG + chr6_3:96503126-96503145 None:intergenic 20.0%
!! TTGATTTACATAAAATAGGA+AGG - chr6_3:96503246-96503265 Msa0967190:CDS 20.0%
!! AATTAAGATAATGTATAGTG+TGG + chr6_3:96503438-96503457 None:intergenic 20.0%
!!! CTAATTGCCTATAATATTTT+TGG - chr6_3:96504004-96504023 Msa0967190:CDS 20.0%
!!! GTTTTTCTATCTCTAAATTT+TGG + chr6_3:96504291-96504310 None:intergenic 20.0%
!!! TAATGAAAATGAATTTTAGG+TGG - chr6_3:96504479-96504498 Msa0967190:intron 20.0%
!!! AATGAAAATGAATTTTAGGT+GGG - chr6_3:96504480-96504499 Msa0967190:intron 20.0%
!!! TTTTGTTGAACTATTATCTA+CGG + chr6_3:96505058-96505077 None:intergenic 20.0%
!! CATATTTACCAAAAATACAT+AGG - chr6_3:96505098-96505117 Msa0967190:CDS 20.0%
!!! ATTGTTCATTTTTGTAAACA+AGG - chr6_3:96505491-96505510 Msa0967190:intron 20.0%
! GTTGTTCACGTAAAAAAAAA+AGG + chr6_3:96501910-96501929 None:intergenic 25.0%
! GCAATGTTAGTAATATTAAG+TGG + chr6_3:96502472-96502491 None:intergenic 25.0%
! TTCAAGAATGCCAATAATAT+AGG - chr6_3:96502543-96502562 Msa0967190:CDS 25.0%
! GTCAAAAGATCCTATATTAT+TGG + chr6_3:96502556-96502575 None:intergenic 25.0%
!!! TTCATGTTTTGATTACATAC+AGG - chr6_3:96502635-96502654 Msa0967190:intron 25.0%
! GCAAATTGATAAACTAAAAC+AGG - chr6_3:96502680-96502699 Msa0967190:intron 25.0%
! AATTGATAAACTAAAACAGG+AGG - chr6_3:96502683-96502702 Msa0967190:intron 25.0%
!!! ATCAAGTTGACTTTTTTCAA+CGG + chr6_3:96502741-96502760 None:intergenic 25.0%
!! AGACGAAATTAATCAAGTTT+TGG - chr6_3:96502800-96502819 Msa0967190:intron 25.0%
!!! ATTCTATTTCTGTGCTATTT+AGG - chr6_3:96502880-96502899 Msa0967190:intron 25.0%
!!! TTCTATTTCTGTGCTATTTA+GGG - chr6_3:96502881-96502900 Msa0967190:intron 25.0%
! CGTTGTTACTAAAAATGTAA+AGG + chr6_3:96503152-96503171 None:intergenic 25.0%
!!! TATTTTTGATATCATTAGGC+CGG - chr6_3:96503358-96503377 Msa0967190:intron 25.0%
! CGTAAGTAGAATTTCATTAT+GGG + chr6_3:96503857-96503876 None:intergenic 25.0%
! ACGTAAGTAGAATTTCATTA+TGG + chr6_3:96503858-96503877 None:intergenic 25.0%
! TAATGAAATTCTACTTACGT+TGG - chr6_3:96503858-96503877 Msa0967190:CDS 25.0%
!!! TTTTGGTCTTTATATATAGG+TGG - chr6_3:96504021-96504040 Msa0967190:CDS 25.0%
! GTCATCAATGTATGATAAAA+TGG + chr6_3:96504180-96504199 None:intergenic 25.0%
!! TGAGTTAGAACTTTTTACTA+AGG - chr6_3:96504226-96504245 Msa0967190:intron 25.0%
!! TTTTTACTAAGGCAATTGAA+AGG - chr6_3:96504237-96504256 Msa0967190:intron 25.0%
!!! TCTTACTTCTTTTAAGAAGT+GGG + chr6_3:96504623-96504642 None:intergenic 25.0%
! GATCTATGTATGTATCTATA+CGG + chr6_3:96504774-96504793 None:intergenic 25.0%
!! TTGTGATCAGAACATTTTTA+GGG - chr6_3:96504804-96504823 Msa0967190:intron 25.0%
! CACAAATGATATCTTCAATT+GGG - chr6_3:96505326-96505345 Msa0967190:intron 25.0%
! ATACTTGGAATGTTATATGA+GGG - chr6_3:96505718-96505737 Msa0967190:intron 25.0%
! TTATATGAGGGAATATGATA+TGG - chr6_3:96505730-96505749 Msa0967190:intron 25.0%
!!! AAGCATTGTCAATTTTCTTT+TGG + chr6_3:96505781-96505800 None:intergenic 25.0%
! AAAAGAAAATTGACAATGCT+TGG - chr6_3:96505780-96505799 Msa0967190:intron 25.0%
! ATATAAATGAGGAATGTCTT+AGG - chr6_3:96505807-96505826 Msa0967190:intron 25.0%
!!! GACATGTATTTTGAAACAGA+GGG + chr6_3:96501968-96501987 None:intergenic 30.0%
ATAGTGCACATTGCAAAAAT+TGG + chr6_3:96501990-96502009 None:intergenic 30.0%
!! CTTGGACATCTATTTTGAAA+CGG - chr6_3:96502193-96502212 Msa0967190:intron 30.0%
! GTTGGTTATTTGTTAGCAAT+AGG - chr6_3:96502335-96502354 Msa0967190:intron 30.0%
! TAGGATTTCCAACATTTTTG+AGG - chr6_3:96502375-96502394 Msa0967190:CDS 30.0%
!! TCCAACATTTTTGAGGAAAA+AGG - chr6_3:96502382-96502401 Msa0967190:CDS 30.0%
! TCCTTTTTCCTCAAAAATGT+TGG + chr6_3:96502386-96502405 None:intergenic 30.0%
TTAATTATACGATCCAAGTG+TGG + chr6_3:96502445-96502464 None:intergenic 30.0%
! ATTGACTCAATATGTCGTTT+GGG - chr6_3:96502759-96502778 Msa0967190:intron 30.0%
! CATTTTGAACAAAATCCTTG+TGG + chr6_3:96502833-96502852 None:intergenic 30.0%
! CACAAGGATTTTGTTCAAAA+TGG - chr6_3:96502831-96502850 Msa0967190:intron 30.0%
AATGGAGAAATAACTCTCAA+AGG - chr6_3:96502849-96502868 Msa0967190:intron 30.0%
ATAGCACAGAAATAGAATGA+AGG + chr6_3:96502878-96502897 None:intergenic 30.0%
TAAGTGGAGATATAAATACC+AGG + chr6_3:96502936-96502955 None:intergenic 30.0%
TTGAGTAAAACAAACTTGTG+TGG - chr6_3:96503000-96503019 Msa0967190:intron 30.0%
!! GGATAATGGGTTGTTTAATA+TGG + chr6_3:96503290-96503309 None:intergenic 30.0%
CATAACATTACACGGATAAT+GGG + chr6_3:96503303-96503322 None:intergenic 30.0%
AAGGTTCTTCCTTAATAAGA+TGG + chr6_3:96503400-96503419 None:intergenic 30.0%
AGATGTATTCAACCAATTCA+AGG - chr6_3:96503567-96503586 Msa0967190:CDS 30.0%
AACATTGATCATAGATGTTG+AGG - chr6_3:96503612-96503631 Msa0967190:CDS 30.0%
ACATTGATCATAGATGTTGA+GGG - chr6_3:96503613-96503632 Msa0967190:CDS 30.0%
! GATTCATGGTGAGAAAATTT+TGG - chr6_3:96503669-96503688 Msa0967190:CDS 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6_3:96503912-96503931 None:intergenic 30.0%
! ATTTTAAATTAAGGAGGGTG+TGG + chr6_3:96503958-96503977 None:intergenic 30.0%
CTAAAAAACTACCTTATGCA+CGG - chr6_3:96504063-96504082 Msa0967190:CDS 30.0%
TAAAAAACTACCTTATGCAC+GGG - chr6_3:96504064-96504083 Msa0967190:CDS 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6_3:96504091-96504110 Msa0967190:CDS 30.0%
TAGAGAAACTTCATGTAATC+CGG + chr6_3:96504529-96504548 None:intergenic 30.0%
!! TTCTTTTAAGAAGTGGGTAA+TGG + chr6_3:96504617-96504636 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+TGG + chr6_3:96504624-96504643 None:intergenic 30.0%
! CTTGTGATCAGAACATTTTT+AGG - chr6_3:96504803-96504822 Msa0967190:intron 30.0%
!! TGTGATCAGAACATTTTTAG+GGG - chr6_3:96504805-96504824 Msa0967190:intron 30.0%
TAACTATATACCAACAACAG+AGG - chr6_3:96505224-96505243 Msa0967190:intron 30.0%
AACACATCAACAATATCAAG+TGG - chr6_3:96505255-96505274 Msa0967190:intron 30.0%
CCAATTGAAGATATCATTTG+TGG + chr6_3:96505328-96505347 None:intergenic 30.0%
CCACAAATGATATCTTCAAT+TGG - chr6_3:96505325-96505344 Msa0967190:intron 30.0%
ATTTCACGCAATATTCTTTG+TGG - chr6_3:96505448-96505467 Msa0967190:intron 30.0%
CATACTTGGAATGTTATATG+AGG - chr6_3:96505717-96505736 Msa0967190:intron 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG + chr6_3:96505768-96505787 None:intergenic 30.0%
TGCTTGGAAAGATATAAATG+AGG - chr6_3:96505796-96505815 Msa0967190:intron 30.0%
! AAACGTAATGGAACTTTAGT+TGG + chr6_3:96505833-96505852 None:intergenic 30.0%
GACAAGCAAATCATTAATGT+AGG + chr6_3:96505945-96505964 None:intergenic 30.0%
!! ACCAAAGATTCTGAAGCATA+CGG + chr6_3:96501874-96501893 None:intergenic 35.0%
!!! GGACATGTATTTTGAAACAG+AGG + chr6_3:96501969-96501988 None:intergenic 35.0%
TAACGGTCAAAATTGTGCAT+TGG - chr6_3:96502152-96502171 Msa0967190:intron 35.0%
!!! GACATCTATTTTGAAACGGA+GGG - chr6_3:96502197-96502216 Msa0967190:intron 35.0%
!! TAGCTCTACCTATTTTCTCT+TGG + chr6_3:96502297-96502316 None:intergenic 35.0%
CTAACAAATAACCAACCCTT+TGG + chr6_3:96502331-96502350 None:intergenic 35.0%
TTAGCAATAGGAATGAAACC+TGG - chr6_3:96502347-96502366 Msa0967190:intron 35.0%
! GATTGACTCAATATGTCGTT+TGG - chr6_3:96502758-96502777 Msa0967190:intron 35.0%
!!! AGTTTTGGAAGATATCCACA+AGG - chr6_3:96502815-96502834 Msa0967190:intron 35.0%
AAAATAGGAAGGATCATCGT+AGG - chr6_3:96503257-96503276 Msa0967190:CDS 35.0%
GCATAACATTACACGGATAA+TGG + chr6_3:96503304-96503323 None:intergenic 35.0%
GAACAGAGCATAACATTACA+CGG + chr6_3:96503311-96503330 None:intergenic 35.0%
TAATAAGATGGCTACCCTAT+AGG + chr6_3:96503388-96503407 None:intergenic 35.0%
ATAGGGTAGCCATCTTATTA+AGG - chr6_3:96503388-96503407 Msa0967190:intron 35.0%
!! GTGGTTCTAGAGTATGAAAA+AGG + chr6_3:96503419-96503438 None:intergenic 35.0%
ATGATTGTTCAACATTGTCG+TGG - chr6_3:96503526-96503545 Msa0967190:CDS 35.0%
ACCATGAATCATCATATGTG+AGG + chr6_3:96503659-96503678 None:intergenic 35.0%
!! TGGTGAGAAAATTTTGGAAG+AGG - chr6_3:96503675-96503694 Msa0967190:CDS 35.0%
!! GAAAATTTTGGAAGAGGCAT+TGG - chr6_3:96503681-96503700 Msa0967190:CDS 35.0%
TCTACTTACGTTGGCAAAAT+TGG - chr6_3:96503867-96503886 Msa0967190:CDS 35.0%
! ATTCCTTTTGATGTAGGCTT+TGG + chr6_3:96503906-96503925 None:intergenic 35.0%
AGCCTACATCAAAAGGAATT+TGG - chr6_3:96503907-96503926 Msa0967190:CDS 35.0%
TGGTCTTTATATATAGGTGG+TGG - chr6_3:96504024-96504043 Msa0967190:CDS 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6_3:96504028-96504047 Msa0967190:CDS 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6_3:96504090-96504109 Msa0967190:CDS 35.0%
!!! ATGTTGCTTTTGGGTTATGA+CGG - chr6_3:96504100-96504119 Msa0967190:CDS 35.0%
TTCCTTGCTTGACAATATTG+AGG + chr6_3:96504137-96504156 None:intergenic 35.0%
TTGTCAAGCAAGGAAAATGA+TGG - chr6_3:96504142-96504161 Msa0967190:CDS 35.0%
TAGGTGGGATATTAGTTGTT+TGG - chr6_3:96504495-96504514 Msa0967190:intron 35.0%
TAGTTGTTTGGATGATCTTC+CGG - chr6_3:96504507-96504526 Msa0967190:intron 35.0%
GTTTCTCTATAAACCACTCT+TGG - chr6_3:96504540-96504559 Msa0967190:intron 35.0%
TCTTCATAAACATCCAAGAG+TGG + chr6_3:96504556-96504575 None:intergenic 35.0%
! TTCTGATCACAAGATTTGCT+AGG + chr6_3:96504796-96504815 None:intergenic 35.0%
! CCTGAACTCCTATGTATTTT+TGG + chr6_3:96505109-96505128 None:intergenic 35.0%
CCAAAAATACATAGGAGTTC+AGG - chr6_3:96505106-96505125 Msa0967190:intron 35.0%
ATAGTTAACATTCAACCACC+TGG + chr6_3:96505211-96505230 None:intergenic 35.0%
TTCATGTATTCCTCTGTTGT+TGG + chr6_3:96505237-96505256 None:intergenic 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_3:96505293-96505312 Msa0967190:intron 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_3:96505294-96505313 Msa0967190:intron 35.0%
! GCAGCAGCATTAACAATTTT+CGG + chr6_3:96505363-96505382 None:intergenic 35.0%
AAACAGTTCGAGCAAAAAAG+AGG - chr6_3:96505683-96505702 Msa0967190:intron 35.0%
ACACACGTCAAAAAACGTAA+TGG + chr6_3:96505845-96505864 None:intergenic 35.0%
AAACCTCAATAAAACGCGAA+AGG + chr6_3:96505874-96505893 None:intergenic 35.0%
TCCGTATGCTTCAGAATCTT+TGG - chr6_3:96501870-96501889 Msa0967190:CDS 40.0%
CATATGTGAAGTGGTTGACT+TGG - chr6_3:96502175-96502194 Msa0967190:intron 40.0%
!!! GGACATCTATTTTGAAACGG+AGG - chr6_3:96502196-96502215 Msa0967190:intron 40.0%
AGCTATAGCAAACACTCCAA+AGG - chr6_3:96502312-96502331 Msa0967190:intron 40.0%
GCTATAGCAAACACTCCAAA+GGG - chr6_3:96502313-96502332 Msa0967190:intron 40.0%
! GGAATGAAACCTGGTGTTTT+AGG - chr6_3:96502356-96502375 Msa0967190:CDS 40.0%
GTTGGAAATCCTAAAACACC+AGG + chr6_3:96502368-96502387 None:intergenic 40.0%
TTATACGATCCAAGTGTGGT+TGG + chr6_3:96502441-96502460 None:intergenic 40.0%
ACTAACATTGCACACTCCAA+AGG - chr6_3:96502481-96502500 Msa0967190:CDS 40.0%
CTAACATTGCACACTCCAAA+GGG - chr6_3:96502482-96502501 Msa0967190:CDS 40.0%
GTGAGTAACTTGAATCCCTT+TGG + chr6_3:96502500-96502519 None:intergenic 40.0%
! ATTAGGCCGGTTTACCTATA+GGG - chr6_3:96503371-96503390 Msa0967190:intron 40.0%
AACCAATTCAAGGACAAGCA+AGG - chr6_3:96503577-96503596 Msa0967190:CDS 40.0%
TTCCTTGCTTGTCCTTGAAT+TGG + chr6_3:96503582-96503601 None:intergenic 40.0%
GCCTCACATATGATGATTCA+TGG - chr6_3:96503655-96503674 Msa0967190:CDS 40.0%
! ATTGGGTTGCAATTGACTCA+AGG + chr6_3:96503723-96503742 None:intergenic 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6_3:96503836-96503855 None:intergenic 40.0%
AGCCTCAATATTGTCAAGCA+AGG - chr6_3:96504132-96504151 Msa0967190:CDS 40.0%
GATGACACGTATGATGCATA+CGG - chr6_3:96504194-96504213 Msa0967190:intron 40.0%
GAGCAAGAAGTGAAGAAAGA+AGG - chr6_3:96504580-96504599 Msa0967190:intron 40.0%
GTATGTATCTATACGGAGAG+TGG + chr6_3:96504767-96504786 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_3:96505288-96505307 Msa0967190:intron 40.0%
! AGGACATGTTGCTTCATACT+TGG - chr6_3:96505703-96505722 Msa0967190:intron 40.0%
!! CAACCTTTCGCGTTTTATTG+AGG - chr6_3:96505868-96505887 Msa0967190:intron 40.0%
GACAACTACACACATTCTGA+AGG - chr6_3:96505908-96505927 Msa0967190:CDS 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6_3:96501834-96501853 Msa0967190:CDS 45.0%
! GTGCATTGGCATATGTGAAG+TGG - chr6_3:96502166-96502185 Msa0967190:intron 45.0%
TAGCAAACACTCCAAAGGGT+TGG - chr6_3:96502317-96502336 Msa0967190:intron 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6_3:96502889-96502908 Msa0967190:intron 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6_3:96502897-96502916 Msa0967190:intron 45.0%
CATGGTCTTTACGTTTCACC+TGG - chr6_3:96502915-96502934 Msa0967190:intron 45.0%
AGGAAGGATCATCGTAGGAT+CGG - chr6_3:96503262-96503281 Msa0967190:intron 45.0%
! CATTAGGCCGGTTTACCTAT+AGG - chr6_3:96503370-96503389 Msa0967190:intron 45.0%
TGGCTACCCTATAGGTAAAC+CGG + chr6_3:96503380-96503399 None:intergenic 45.0%
!!! GAGGCATTGGCTTTTACTTC+TGG - chr6_3:96503694-96503713 Msa0967190:CDS 45.0%
CGCAAGAGAAGGACTCAATT+GGG + chr6_3:96503740-96503759 None:intergenic 45.0%
TCGCAAGAGAAGGACTCAAT+TGG + chr6_3:96503741-96503760 None:intergenic 45.0%
!! TTGACTTGTGTCGCAAGAGA+AGG + chr6_3:96503751-96503770 None:intergenic 45.0%
CTTGCGACACAAGTCAAACA+TGG - chr6_3:96503754-96503773 Msa0967190:intron 45.0%
CAAAAACTTGCCTAGGCTAG+AGG - chr6_3:96503795-96503814 Msa0967190:intron 45.0%
GCTCCAAAGCCTACATCAAA+AGG - chr6_3:96503900-96503919 Msa0967190:CDS 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6_3:96504034-96504053 Msa0967190:CDS 45.0%
AGTCCAAGCTTACATGAGTG+AGG - chr6_3:96505185-96505204 Msa0967190:intron 45.0%
ATCAAGTGGTTACCCAGTGT+TGG - chr6_3:96505269-96505288 Msa0967190:intron 45.0%
AAGAAGTCGTAGCCAACACT+GGG + chr6_3:96505284-96505303 None:intergenic 45.0%
TAAGAAGTCGTAGCCAACAC+TGG + chr6_3:96505285-96505304 None:intergenic 45.0%
TGCTGTTCATTGCAGGCTTA+GGG - chr6_3:96505380-96505399 Msa0967190:intron 45.0%
GGATGAAATTGTGTCTAGCG+AGG - chr6_3:96505401-96505420 Msa0967190:intron 45.0%
!!! TCATTTTTTATATTTTAATT+TGG - chr6_3:96502970-96502989 Msa0967190:intron 5.0%
!!! TTCAATTTAATTTTAAATTA+AGG + chr6_3:96503967-96503986 None:intergenic 5.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6_3:96501833-96501852 Msa0967190:CDS 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6_3:96501835-96501854 Msa0967190:CDS 50.0%
ATTTCCACCCTAGCGTTTGG+GGG - chr6_3:96501836-96501855 Msa0967190:CDS 50.0%
CATTGCACACCAACCACACT+TGG - chr6_3:96502429-96502448 Msa0967190:CDS 50.0%
! CTAGGCAAGTTTTTGCGCAG+AGG + chr6_3:96503790-96503809 None:intergenic 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6_3:96503788-96503807 Msa0967190:intron 50.0%
TAGCTTCTTGCCTCTAGCCT+AGG + chr6_3:96503808-96503827 None:intergenic 50.0%
ACTACTCTGTCCCGTGCATA+AGG + chr6_3:96504077-96504096 None:intergenic 50.0%
TGGCCTCACTCATGTAAGCT+TGG + chr6_3:96505191-96505210 None:intergenic 50.0%
AAGCTTACATGAGTGAGGCC+AGG - chr6_3:96505190-96505209 Msa0967190:intron 50.0%
ATGCTGCTGCTGTTCATTGC+AGG - chr6_3:96505373-96505392 Msa0967190:intron 50.0%
CTGCTGTTCATTGCAGGCTT+AGG - chr6_3:96505379-96505398 Msa0967190:intron 50.0%
TTTCCACCCTAGCGTTTGGG+GGG - chr6_3:96501837-96501856 Msa0967190:CDS 55.0%
AGAAGTCCCCCCAAACGCTA+GGG + chr6_3:96501846-96501865 None:intergenic 55.0%
AAGAAGTCCCCCCAAACGCT+AGG + chr6_3:96501847-96501866 None:intergenic 55.0%
CTTACATGAGTGAGGCCAGG+TGG - chr6_3:96505193-96505212 Msa0967190:intron 55.0%
AGTCCCCCCAAACGCTAGGG+TGG + chr6_3:96501843-96501862 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 96501793 96505982 96501793 ID=Msa0967190;Name=Msa0967190
chr6_3 mRNA 96501793 96505982 96501793 ID=Msa0967190-mRNA-1;Parent=Msa0967190;Name=Msa0967190-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|7|0|550
chr6_3 exon 96505884 96505982 96505884 ID=Msa0967190-mRNA-1:exon:17915;Parent=Msa0967190-mRNA-1
chr6_3 exon 96504839 96505118 96504839 ID=Msa0967190-mRNA-1:exon:17914;Parent=Msa0967190-mRNA-1
chr6_3 exon 96503834 96504206 96503834 ID=Msa0967190-mRNA-1:exon:17913;Parent=Msa0967190-mRNA-1
chr6_3 exon 96503517 96503735 96503517 ID=Msa0967190-mRNA-1:exon:17912;Parent=Msa0967190-mRNA-1
chr6_3 exon 96503139 96503277 96503139 ID=Msa0967190-mRNA-1:exon:17911;Parent=Msa0967190-mRNA-1
chr6_3 exon 96502353 96502601 96502353 ID=Msa0967190-mRNA-1:exon:17910;Parent=Msa0967190-mRNA-1
chr6_3 exon 96501793 96502086 96501793 ID=Msa0967190-mRNA-1:exon:17909;Parent=Msa0967190-mRNA-1
chr6_3 CDS 96505884 96505982 96505884 ID=Msa0967190-mRNA-1:cds;Parent=Msa0967190-mRNA-1
chr6_3 CDS 96504839 96505118 96504839 ID=Msa0967190-mRNA-1:cds;Parent=Msa0967190-mRNA-1
chr6_3 CDS 96503834 96504206 96503834 ID=Msa0967190-mRNA-1:cds;Parent=Msa0967190-mRNA-1
chr6_3 CDS 96503517 96503735 96503517 ID=Msa0967190-mRNA-1:cds;Parent=Msa0967190-mRNA-1
chr6_3 CDS 96503139 96503277 96503139 ID=Msa0967190-mRNA-1:cds;Parent=Msa0967190-mRNA-1
chr6_3 CDS 96502353 96502601 96502353 ID=Msa0967190-mRNA-1:cds;Parent=Msa0967190-mRNA-1
chr6_3 CDS 96501793 96502086 96501793 ID=Msa0967190-mRNA-1:cds;Parent=Msa0967190-mRNA-1
Gene Sequence

>Msa0967190

ATGTCTCATAACGAGAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGAATTTGATATAAATATTGCGGCGCAAATTGATAAACTAAAACAGGAGGTTAGACAAATGCTTGTCTCAAAAATCGAGAATCCGTTGAAAAAAGTCAACTTGATTGACTCAATATGTCGTTTGGGTGTGAGCTATTATTTTGAAGACGAAATTAATCAAGTTTTGGAAGATATCCACAAGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGCAACCTTCATTCTATTTCTGTGCTATTTAGGGTGTTGAGGCAACATGGTCTTTACGTTTCACCTGATGTATTCAACCAATTCAAGGACAAGCAAGGAAATTTTAGTGAAACATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGATTCATGGTGAGAAAATTTTGGAAGAGGCATTGGCTTTTACTTCTGGTCACCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGACACAAGTCAAACATGGCTTAAGACATCCTCTGCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAGGAATTTGGAAACATTTGCAAGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAATGATGGCAAAAGTAATCTCCATTTTATCATACATTGATGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGCAATTGAAAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATTGAGCAAGAAGTGAAGAAAGAAGGAAGAGTATATGCCATTACCCACTTCTTAAAAGAATTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAACTATATACCAACAACAGAGGAATACATGAACACATCAACAATATCAAGTGGTTACCCAGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCCACAAATGATATCTTCAATTGGGTAACTAGTCATCCGAAAATTGTTAATGCTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCGAGTTCGAGCAAAAAAGAGGACATGTTGCTTCATACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTACGTTTTTTGACGTGTGTTCTCAACCTTTCGCGTTTTATTGAGGTTTTTTACAAAGATGAAGACAACTACACACATTCTGAAGGACTAATGAAGACCTACATTAATGATTTGCTTGTCAATCCCATCCCAACATGA
Protein sequence

>Msa0967190

MSHNEKSVLQRNVADFHPSVWGDFFIPYASESLEFDINIAAQIDKLKQEVRQMLVSKIENPLKKVNLIDSICRLGVSYYFEDEINQVLEDIHKDFVQNGEITLKGNLHSISVLFRVLRQHGLYVSPDVFNQFKDKQGNFSETLIIDVEGMLNLYEASHMMIHGEKILEEALAFTSGHLESIATQLSPSLATQVKHGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQSLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKMMAKVISILSYIDDTYDAYGTIDELELFTKAIERWDISCLDDLPDYMKFLYKPLLDVYEEIEQEVKKEGRVYAITHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPVLATTSYIGMGNIATNDIFNWVTSHPKIVNAAAVHCRLRDEIVSSEFEQKRGHVASYLECYMREYDMDREAAIQECQKKIDNAWKDINEECLRPTKVPLRFLTCVLNLSRFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT*