AlfalfaGEDB | Msa0967200

M. sativa cultivar zhongmu-4 / Msa0967200

KEGG: K15803
GO: GO:0003674 GO:0003824 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010333 GO:0010334 GO:0016829 GO:0016835 GO:0016838 GO:0019637 GO:0042214 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045338 GO:0046246 GO:0051761 GO:0051762 GO:0071704 GO:1901576
PFAM: PF01397.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967200	XP_004497487.1	74.816	544	137	0	6	549	12	555	0.0	874

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967200	sp\|Q6Q3H3\|TPSGD_VITVI	52.372	548	257	1	2	549	13	556	0.0	613

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0209060	Msa0967200	0.835139	1.996843e-56	-8.615850e-47
Msa0288540	Msa0967200	0.834929	2.255640e-56	-8.615850e-47
Msa0326770	Msa0967200	0.840410	8.843257e-58	-8.615850e-47
Msa0886800	Msa0967200	0.819007	1.455748e-52	-8.615850e-47
Msa0894010	Msa0967200	0.820166	7.919659e-53	-8.615850e-47
Msa0894020	Msa0967200	0.840475	8.503195e-58	-8.615850e-47
Msa0894030	Msa0967200	0.868763	5.128717e-66	-8.615850e-47
Msa0894040	Msa0967200	0.901047	3.974827e-78	-8.615850e-47
Msa0894070	Msa0967200	0.881452	2.371766e-70	-8.615850e-47
Msa0894100	Msa0967200	0.843714	1.182017e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
Msa0967200	MtrunA17_Chr6g0465441	68.670	549	172	1	549	4	552	811
Msa0967200	MtrunA17_Chr7g0236991	68.488	549	173	1	549	4	552	811
Msa0967200	MtrunA17_Chr7g0237001	68.306	549	174	1	549	4	552	810
Msa0967200	MtrunA17_Chr7g0237041	68.306	549	174	1	549	4	552	810
Msa0967200	MtrunA17_Chr7g0237081	68.306	549	174	1	549	4	552	810
Msa0967200	MtrunA17_Chr7g0237051	68.306	549	174	1	549	4	552	810
Msa0967200	MtrunA17_Chr5g0425371	70.556	540	159	10	549	13	552	804
Msa0967200	MtrunA17_Chr6g0465911	68.306	549	174	1	549	4	552	798
Msa0967200	MtrunA17_Chr6g0466051	68.124	549	175	1	549	4	552	796
Msa0967200	MtrunA17_Chr4g0024691	69.301	544	167	6	549	17	560	794

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0967200	AT5G23960.2	40.110	546	320	5	7	549	3	544	5.12e-151	444
Msa0967200	AT5G23960.1	40.146	548	319	6	7	549	3	546	5.68e-150	442
Msa0967200	AT1G70080.1	38.278	546	327	7	11	548	66	609	9.07e-127	384
Msa0967200	AT3G14490.1	37.912	546	327	7	11	549	60	600	7.07e-122	371
Msa0967200	AT3G14520.1	36.735	539	333	5	16	549	68	603	1.60e-121	370
Msa0967200	AT1G31950.1	36.111	540	335	5	16	549	70	605	3.54e-120	367
Msa0967200	AT3G14540.1	36.920	539	332	4	16	549	65	600	1.24e-119	365
Msa0967200	AT1G31950.3	36.044	541	335	6	16	549	70	606	1.27e-119	366
Msa0967200	AT5G44630.1	35.963	545	338	6	12	548	14	555	1.39e-114	351
Msa0967200	AT1G33750.1	34.831	534	342	4	18	549	73	602	2.46e-113	349

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Find 92 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAATTGACAATGCT+TGG	0.419595	6_3:-96517155	Msa0967200:CDS
AAACCTCAATAAAACGCGAA+AGG	0.623927	6_3:+96517064	None:intergenic
AAACGTAATGGAACTTTAGT+TGG	0.382677	6_3:+96517105	None:intergenic
AACACATCAACAATATCAAG+TGG	0.595383	6_3:-96517680	Msa0967200:CDS
AACATTGATCATAGATGTTG+AGG	0.512550	6_3:-96519323	Msa0967200:CDS
AACCAATTCAAGGACAAGCA+AGG	0.604565	6_3:-96519358	Msa0967200:CDS
AAGAAGTCGTAGCCAACACT+GGG	0.613680	6_3:+96517654	None:intergenic
AAGCTTACATGAGTGAGGCC+AGG	0.576657	6_3:-96517745	Msa0967200:CDS
AATCAATGCTCATGTTGGGA+TGG	0.533171	6_3:+96516966	None:intergenic
AATGGAGAAATAACTCTCAA+AGG	0.571243	6_3:-96520086	Msa0967200:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAGTGCACATTGCAAAAAT+TGG	+	chr6_3:96517172-96517191	None:intergenic	30.0%
TTAATTATACGATCCAAGTG+TGG	+	chr6_3:96517627-96517646	None:intergenic	30.0%
AATGGAGAAATAACTCTCAA+AGG	-	chr6_3:96518031-96518050	Msa0967200:intron	30.0%
ATAGCACAGAAATAGAATGA+AGG	+	chr6_3:96518060-96518079	None:intergenic	30.0%
TAAGTGGAGATATAAATACC+AGG	+	chr6_3:96518118-96518137	None:intergenic	30.0%
TTGAGTAAAACAAACTTGTG+TGG	-	chr6_3:96518182-96518201	Msa0967200:intron	30.0%
CATAACATTACACGGATAAT+GGG	+	chr6_3:96518485-96518504	None:intergenic	30.0%
AAGGTTCTTCCTTAATAAGA+TGG	+	chr6_3:96518582-96518601	None:intergenic	30.0%
AGATGTATTCAACCAATTCA+AGG	-	chr6_3:96518749-96518768	Msa0967200:CDS	30.0%
AACATTGATCATAGATGTTG+AGG	-	chr6_3:96518794-96518813	Msa0967200:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	96516975	96521164	96516975	ID=Msa0967200;Name=Msa0967200
chr6_3	mRNA	96516975	96521164	96516975	ID=Msa0967200-mRNA-1;Parent=Msa0967200;Name=Msa0967200-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0\|0\|1\|1\|1\|7\|0\|550
chr6_3	exon	96521066	96521164	96521066	ID=Msa0967200-mRNA-1:exon:17908;Parent=Msa0967200-mRNA-1
chr6_3	exon	96520021	96520300	96520021	ID=Msa0967200-mRNA-1:exon:17907;Parent=Msa0967200-mRNA-1
chr6_3	exon	96519016	96519388	96519016	ID=Msa0967200-mRNA-1:exon:17906;Parent=Msa0967200-mRNA-1
chr6_3	exon	96518699	96518917	96518699	ID=Msa0967200-mRNA-1:exon:17905;Parent=Msa0967200-mRNA-1
chr6_3	exon	96518321	96518459	96518321	ID=Msa0967200-mRNA-1:exon:17904;Parent=Msa0967200-mRNA-1
chr6_3	exon	96517535	96517783	96517535	ID=Msa0967200-mRNA-1:exon:17903;Parent=Msa0967200-mRNA-1
chr6_3	exon	96516975	96517268	96516975	ID=Msa0967200-mRNA-1:exon:17902;Parent=Msa0967200-mRNA-1
chr6_3	CDS	96521066	96521164	96521066	ID=Msa0967200-mRNA-1:cds;Parent=Msa0967200-mRNA-1
chr6_3	CDS	96520021	96520300	96520021	ID=Msa0967200-mRNA-1:cds;Parent=Msa0967200-mRNA-1
chr6_3	CDS	96519016	96519388	96519016	ID=Msa0967200-mRNA-1:cds;Parent=Msa0967200-mRNA-1
chr6_3	CDS	96518699	96518917	96518699	ID=Msa0967200-mRNA-1:cds;Parent=Msa0967200-mRNA-1
chr6_3	CDS	96518321	96518459	96518321	ID=Msa0967200-mRNA-1:cds;Parent=Msa0967200-mRNA-1
chr6_3	CDS	96517535	96517783	96517535	ID=Msa0967200-mRNA-1:cds;Parent=Msa0967200-mRNA-1
chr6_3	CDS	96516975	96517268	96516975	ID=Msa0967200-mRNA-1:cds;Parent=Msa0967200-mRNA-1

Gene Sequence

>Msa0967200

ATGTCTCATAACGAGAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGAATTTGATATAAATATTGCGGCGCAAATTGATAAACTAAAACAGGAGGTTAGACAAATGCTTGTCTCAAAAATCGAGAATCCGTTGAAAAAAGTCAACTTGATTGACTCAATATGTCGTTTGGGTGTGAGCTATTATTTTGAAGACGAAATTAATCAAGTTTTGGAAGATATCCACAAGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGCAACCTTCATTCTATTTCTGTGCTATTTAGGGTGTTGAGGCAACATGGTCTTTACGTTTCACCTGATGTATTCAACCAATTCAAGGACAAGCAAGGAAATTTTAGTGAAACATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGATTCATGGTGAGAAAATTTTGGAAGAGGCATTGGCTTTTACTTCTGGTCACCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGACACAAGTCAAACATGGCTTAAGACATCCTCTGCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAGGAATTTGGAAACATTTGCAAGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAATGATGGCAAAAGTAATCTCCATTTTATCATACATTGATGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGCAATTGAAAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATTGAGCAAGAAGTGAAGAAAGAAGGAAGAGTATATGCCATTACCCACTTCTTAAAAGAATTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAACTATATACCAACAACAGAGGAATACATGAACACATCAACAATATCAAGTGGTTACCCAGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCCACAAATGATATCTTCAATTGGGTAACTAGTCATCCGAAAATTGTTAATGCTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCGAGTTCGAGCAAAAAAGAGGACATGTTGCTTCATACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTACGTTTTTTGACGTGTGTTCTCAACCTTTCGCGTTTTATTGAGGTTTTTTACAAAGATGAAGACAACTACACACATTCTGAAGGACTAATGAAGACCTACATTAATGATTTGCTTGTCAATCCCATCCCAACATGA

Protein sequence

>Msa0967200

MSHNEKSVLQRNVADFHPSVWGDFFIPYASESLEFDINIAAQIDKLKQEVRQMLVSKIENPLKKVNLIDSICRLGVSYYFEDEINQVLEDIHKDFVQNGEITLKGNLHSISVLFRVLRQHGLYVSPDVFNQFKDKQGNFSETLIIDVEGMLNLYEASHMMIHGEKILEEALAFTSGHLESIATQLSPSLATQVKHGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQSLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKMMAKVISILSYIDDTYDAYGTIDELELFTKAIERWDISCLDDLPDYMKFLYKPLLDVYEEIEQEVKKEGRVYAITHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPVLATTSYIGMGNIATNDIFNWVTSHPKIVNAAAVHCRLRDEIVSSEFEQKRGHVASYLECYMREYDMDREAAIQECQKKIDNAWKDINEECLRPTKVPLRFLTCVLNLSRFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT*