Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001540 | XP_003620935.1 | 78.873 | 213 | 5 | 3 | 1 | 173 | 96 | 308 | 2.94e-108 | 321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001540 | G7KJU8 | 78.873 | 213 | 5 | 3 | 1 | 173 | 96 | 308 | 1.40e-108 | 321 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078170 | Msa1001540 | 0.803554 | 3.298375e-49 | -8.615850e-47 |
| Msa0080620 | Msa1001540 | 0.803462 | 3.446457e-49 | -8.615850e-47 |
| Msa0630910 | Msa1001540 | 0.803847 | 2.866784e-49 | -8.615850e-47 |
| Msa0673620 | Msa1001540 | 0.807854 | 4.123959e-50 | -8.615850e-47 |
| Msa0469840 | Msa1001540 | 0.800099 | 1.689535e-48 | -8.615850e-47 |
| Msa1001540 | Msa1331720 | 0.821630 | 3.644821e-53 | -8.615850e-47 |
| Msa1001540 | Msa1382100 | 0.801503 | 8.731118e-49 | -8.615850e-47 |
| Msa0269660 | Msa1001540 | 0.801399 | 9.172562e-49 | -8.615850e-47 |
| Msa0273780 | Msa1001540 | 0.801569 | 8.465250e-49 | -8.615850e-47 |
| Msa0490740 | Msa1001540 | 0.802001 | 6.901637e-49 | -8.615850e-47 |
| Msa0901660 | Msa1001540 | 0.820639 | 6.167383e-53 | -8.615850e-47 |
| Msa0927190 | Msa1001540 | 0.809148 | 2.183280e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001540 | MtrunA17_Chr6g0488521 | 76.316 | 190 | 5 | 3 | 1 | 150 | 96 | 285 | 9.06e-95 | 277 |
| Msa1001540 | MtrunA17_Chr7g0226681 | 33.520 | 179 | 84 | 3 | 7 | 154 | 69 | 243 | 3.19e-25 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001540 | AT4G29590.1 | 70.813 | 209 | 21 | 3 | 2 | 170 | 106 | 314 | 1.57e-98 | 287 |
| Msa1001540 | AT3G01660.1 | 33.708 | 178 | 83 | 3 | 8 | 154 | 63 | 236 | 1.40e-28 | 107 |
Find 42 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTCCTGGAGTAAGCATTT+TGG | 0.244912 | 6_4:-85348584 | Msa1001540:CDS |
| TTACAAAAGCCATTTCTATA+TGG | 0.289442 | 6_4:-85347013 | Msa1001540:CDS |
| TATCTTCAAATGAGAGTTTA+GGG | 0.299222 | 6_4:+85347932 | None:intergenic |
| TTATCTTCAAATGAGAGTTT+AGG | 0.310263 | 6_4:+85347931 | None:intergenic |
| TCCTCCTGCATAATGAAAAT+AGG | 0.331325 | 6_4:+85346950 | None:intergenic |
| ACAAGATTGTCACCTCATTA+TGG | 0.338362 | 6_4:+85347556 | None:intergenic |
| GGATCCGAGTGTCCAGGATT+TGG | 0.359391 | 6_4:+85346422 | None:intergenic |
| GCCGATCATGTTATGATTGT+TGG | 0.395109 | 6_4:-85346975 | Msa1001540:CDS |
| ATTTCTATATGGACATCAAC+CGG | 0.418619 | 6_4:-85347002 | Msa1001540:CDS |
| TTAGTCAGAGCAGCAATTGC+AGG | 0.435836 | 6_4:+85348637 | None:intergenic |
| CTCATTATGGCCAATCCACC+TGG | 0.458613 | 6_4:+85347569 | None:intergenic |
| TGCAGAATCTGATGACCTAA+AGG | 0.464315 | 6_4:+85348699 | None:intergenic |
| ATTGCTAGGTGGGAAAACTT+TGG | 0.475531 | 6_4:+85348606 | None:intergenic |
| GGTTGATGTCCATATAGAAA+TGG | 0.479380 | 6_4:+85347004 | None:intergenic |
| TTTGGATATGTGTAGCAGTT+GGG | 0.481811 | 6_4:-85348566 | Msa1001540:intron |
| GATACTCAAGCCAGGTGGAT+TGG | 0.490478 | 6_4:-85347579 | Msa1001540:CDS |
| CATAACATGATCGGCATCCC+CGG | 0.501982 | 6_4:+85346983 | None:intergenic |
| AAATGTCAAGAGGCTTTGTC+AGG | 0.502031 | 6_4:+85347618 | None:intergenic |
| GCAGAATCTGATGACCTAAA+GGG | 0.510716 | 6_4:+85348700 | None:intergenic |
| GTGGATATATCTCCAAATCC+TGG | 0.515525 | 6_4:-85346434 | Msa1001540:CDS |
| CTCCAGGAGTATTGCTAGGT+GGG | 0.522868 | 6_4:+85348596 | None:intergenic |
| ATCTCCAAATCCTGGACACT+CGG | 0.525670 | 6_4:-85346426 | Msa1001540:CDS |
| AGGAGGATTTGAACCTCCTC+AGG | 0.530086 | 6_4:-85346934 | Msa1001540:intron |
| TACATAGGATCCGAGTGTCC+AGG | 0.530874 | 6_4:+85346416 | None:intergenic |
| TTCCCACCTAGCAATACTCC+TGG | 0.531377 | 6_4:-85348598 | Msa1001540:CDS |
| CTAGAGTACACAATGTACAT+AGG | 0.534544 | 6_4:+85346401 | None:intergenic |
| TTTCTATATGGACATCAACC+GGG | 0.564851 | 6_4:-85347001 | Msa1001540:CDS |
| TCCAACAATCATAACATGAT+CGG | 0.579473 | 6_4:+85346974 | None:intergenic |
| ATATCCAAAATGCTTACTCC+AGG | 0.588855 | 6_4:+85348580 | None:intergenic |
| TAGTCAGAGCAGCAATTGCA+GGG | 0.591972 | 6_4:+85348638 | None:intergenic |
| CTTACTCCAGGAGTATTGCT+AGG | 0.592913 | 6_4:+85348592 | None:intergenic |
| ATCTCCATGAAAATGTCAAG+AGG | 0.599849 | 6_4:+85347608 | None:intergenic |
| GTTGCTGCCGTAGGTCCTCA+CGG | 0.600254 | 6_4:-85347983 | Msa1001540:intron |
| CAGGTGGATTGGCCATAATG+AGG | 0.601130 | 6_4:-85347568 | Msa1001540:intron |
| ATGAATAGGATACTCAAGCC+AGG | 0.611206 | 6_4:-85347587 | Msa1001540:CDS |
| TTTCGATGTCATCACTAATG+TGG | 0.633015 | 6_4:-85347905 | Msa1001540:intron |
| TCGATGTGTGTTACGAATCG+AGG | 0.637675 | 6_4:+85348664 | None:intergenic |
| ACTCCAGGAGTATTGCTAGG+TGG | 0.650096 | 6_4:+85348595 | None:intergenic |
| AGTGAGGGAATTACCTGAGG+AGG | 0.650414 | 6_4:+85346921 | None:intergenic |
| TTCTATATGGACATCAACCG+GGG | 0.671373 | 6_4:-85347000 | Msa1001540:CDS |
| AATAGGATACTCAAGCCAGG+TGG | 0.715241 | 6_4:-85347584 | Msa1001540:CDS |
| CTTGTACAGTATACTCCGTG+AGG | 0.730572 | 6_4:+85347968 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTAAAAAACAATGACT+TGG | - | chr6_4:85347020-85347039 | Msa1001540:CDS | 15.0% |
| !!! | ATATATTTTAACTTCGATAT+TGG | - | chr6_4:85347224-85347243 | Msa1001540:intron | 15.0% |
| !! | GATGTTATTATATCTATTAT+TGG | - | chr6_4:85347980-85347999 | Msa1001540:intron | 15.0% |
| !! | TATTAATAACTGATCATAAA+GGG | - | chr6_4:85348352-85348371 | Msa1001540:intron | 15.0% |
| !! | TTAATTAAAAAACAATGACT+TGG | - | chr6_4:85347020-85347039 | Msa1001540:CDS | 15.0% |
| !!! | ATATATTTTAACTTCGATAT+TGG | - | chr6_4:85347224-85347243 | Msa1001540:intron | 15.0% |
| !! | GATGTTATTATATCTATTAT+TGG | - | chr6_4:85347980-85347999 | Msa1001540:intron | 15.0% |
| !! | TATTAATAACTGATCATAAA+GGG | - | chr6_4:85348352-85348371 | Msa1001540:intron | 15.0% |
| !! | ATAAATCTTTACTTTGCATT+AGG | - | chr6_4:85346614-85346633 | Msa1001540:intron | 20.0% |
| !! | AAATGAAATGATGAATTTCT+TGG | - | chr6_4:85347350-85347369 | Msa1001540:intron | 20.0% |
| !! | TAACATCAAAAACAGATAAA+TGG | + | chr6_4:85347967-85347986 | None:intergenic | 20.0% |
| !! | GTATTAATAACTGATCATAA+AGG | - | chr6_4:85348351-85348370 | Msa1001540:intron | 20.0% |
| !! | TAACAACGTTATTACAAAAA+GGG | + | chr6_4:85348453-85348472 | None:intergenic | 20.0% |
| !! | TTAACAACGTTATTACAAAA+AGG | + | chr6_4:85348454-85348473 | None:intergenic | 20.0% |
| !!! | AGGAAAATTCTGTTTTATAT+AGG | + | chr6_4:85348528-85348547 | None:intergenic | 20.0% |
| !! | ATAAATCTTTACTTTGCATT+AGG | - | chr6_4:85346614-85346633 | Msa1001540:intron | 20.0% |
| !! | AAATGAAATGATGAATTTCT+TGG | - | chr6_4:85347350-85347369 | Msa1001540:intron | 20.0% |
| !! | TAACATCAAAAACAGATAAA+TGG | + | chr6_4:85347967-85347986 | None:intergenic | 20.0% |
| !! | GTATTAATAACTGATCATAA+AGG | - | chr6_4:85348351-85348370 | Msa1001540:intron | 20.0% |
| !! | TAACAACGTTATTACAAAAA+GGG | + | chr6_4:85348453-85348472 | None:intergenic | 20.0% |
| !! | TTAACAACGTTATTACAAAA+AGG | + | chr6_4:85348454-85348473 | None:intergenic | 20.0% |
| !!! | AGGAAAATTCTGTTTTATAT+AGG | + | chr6_4:85348528-85348547 | None:intergenic | 20.0% |
| ! | TTAGGATACCAAATTCAAAA+TGG | + | chr6_4:85346921-85346940 | None:intergenic | 25.0% |
| ! | CAATCTAGAAAAGTAATCTT+AGG | + | chr6_4:85346939-85346958 | None:intergenic | 25.0% |
| !!! | CTAAGATTACTTTTCTAGAT+TGG | - | chr6_4:85346937-85346956 | Msa1001540:CDS | 25.0% |
| ! | TTGGCTAGATAATCATATTA+AGG | + | chr6_4:85346991-85347010 | None:intergenic | 25.0% |
| ! | AGCAACAATTTCTATCAATA+AGG | + | chr6_4:85347094-85347113 | None:intergenic | 25.0% |
| ! | TATCTTCAAATGAGAGTTTA+GGG | + | chr6_4:85347162-85347181 | None:intergenic | 25.0% |
| ! | TTATCTTCAAATGAGAGTTT+AGG | + | chr6_4:85347163-85347182 | None:intergenic | 25.0% |
| ! | AAGTAATTCCAAAATGATAG+CGG | + | chr6_4:85347561-85347580 | None:intergenic | 25.0% |
| !!! | AATTATACACTACTGATTCT+AGG | + | chr6_4:85347743-85347762 | None:intergenic | 25.0% |
| ! | TGTATAATTTCACACTGAAA+AGG | - | chr6_4:85347754-85347773 | Msa1001540:intron | 25.0% |
| ! | GTATAATTTCACACTGAAAA+GGG | - | chr6_4:85347755-85347774 | Msa1001540:intron | 25.0% |
| ! | TTACAAAAGCCATTTCTATA+TGG | - | chr6_4:85348078-85348097 | Msa1001540:intron | 25.0% |
| !! | TGATATTTTCCCATTTTGTT+AGG | - | chr6_4:85348192-85348211 | Msa1001540:intron | 25.0% |
| ! | ATACAAGAATTACAACAACA+TGG | + | chr6_4:85348335-85348354 | None:intergenic | 25.0% |
| ! | CGATTTCTGTTCTTATTATT+CGG | - | chr6_4:85348422-85348441 | Msa1001540:intron | 25.0% |
| ! | TAATAACGTTGTTAACATAC+TGG | - | chr6_4:85348459-85348478 | Msa1001540:intron | 25.0% |
| !!! | CATGTAACTTCTTTTTTTGT+AGG | - | chr6_4:85348632-85348651 | Msa1001540:CDS | 25.0% |
| ! | TTAGGATACCAAATTCAAAA+TGG | + | chr6_4:85346921-85346940 | None:intergenic | 25.0% |
| ! | CAATCTAGAAAAGTAATCTT+AGG | + | chr6_4:85346939-85346958 | None:intergenic | 25.0% |
| !!! | CTAAGATTACTTTTCTAGAT+TGG | - | chr6_4:85346937-85346956 | Msa1001540:CDS | 25.0% |
| ! | TTGGCTAGATAATCATATTA+AGG | + | chr6_4:85346991-85347010 | None:intergenic | 25.0% |
| ! | AGCAACAATTTCTATCAATA+AGG | + | chr6_4:85347094-85347113 | None:intergenic | 25.0% |
| ! | TATCTTCAAATGAGAGTTTA+GGG | + | chr6_4:85347162-85347181 | None:intergenic | 25.0% |
| ! | TTATCTTCAAATGAGAGTTT+AGG | + | chr6_4:85347163-85347182 | None:intergenic | 25.0% |
| ! | AAGTAATTCCAAAATGATAG+CGG | + | chr6_4:85347561-85347580 | None:intergenic | 25.0% |
| !!! | AATTATACACTACTGATTCT+AGG | + | chr6_4:85347743-85347762 | None:intergenic | 25.0% |
| ! | TGTATAATTTCACACTGAAA+AGG | - | chr6_4:85347754-85347773 | Msa1001540:intron | 25.0% |
| ! | GTATAATTTCACACTGAAAA+GGG | - | chr6_4:85347755-85347774 | Msa1001540:intron | 25.0% |
| ! | TTACAAAAGCCATTTCTATA+TGG | - | chr6_4:85348078-85348097 | Msa1001540:intron | 25.0% |
| !! | TGATATTTTCCCATTTTGTT+AGG | - | chr6_4:85348192-85348211 | Msa1001540:intron | 25.0% |
| ! | ATACAAGAATTACAACAACA+TGG | + | chr6_4:85348335-85348354 | None:intergenic | 25.0% |
| ! | CGATTTCTGTTCTTATTATT+CGG | - | chr6_4:85348422-85348441 | Msa1001540:intron | 25.0% |
| ! | TAATAACGTTGTTAACATAC+TGG | - | chr6_4:85348459-85348478 | Msa1001540:intron | 25.0% |
| !!! | CATGTAACTTCTTTTTTTGT+AGG | - | chr6_4:85348632-85348651 | Msa1001540:CDS | 25.0% |
| TCTTCAATTCTTCTTCATTC+AGG | + | chr6_4:85346689-85346708 | None:intergenic | 30.0% | |
| ACAACAGCACTATAAAATAG+CGG | + | chr6_4:85346888-85346907 | None:intergenic | 30.0% | |
| !! | TATTTTATAGTGCTGTTGTG+TGG | - | chr6_4:85346889-85346908 | Msa1001540:intron | 30.0% |
| TTAACTTCGATATTGGAAAC+TGG | - | chr6_4:85347231-85347250 | Msa1001540:intron | 30.0% | |
| GAAAACTCAATATATCTTGC+AGG | - | chr6_4:85347437-85347456 | Msa1001540:intron | 30.0% | |
| ! | ACATTTTCATGGAGATGAAT+AGG | - | chr6_4:85347490-85347509 | Msa1001540:intron | 30.0% |
| ! | TAAGCAAGTGACAATTTTGT+AGG | + | chr6_4:85347641-85347660 | None:intergenic | 30.0% |
| CACAATATAACACTGAAACA+CGG | + | chr6_4:85347792-85347811 | None:intergenic | 30.0% | |
| GAAGTCAAAGTTAGTTGAAT+AGG | + | chr6_4:85348024-85348043 | None:intergenic | 30.0% | |
| ATTTCTATATGGACATCAAC+CGG | - | chr6_4:85348089-85348108 | Msa1001540:intron | 30.0% | |
| TCCAACAATCATAACATGAT+CGG | + | chr6_4:85348120-85348139 | None:intergenic | 30.0% | |
| AAATGGGAAAATATCAGTGA+GGG | + | chr6_4:85348188-85348207 | None:intergenic | 30.0% | |
| AAAATGGGAAAATATCAGTG+AGG | + | chr6_4:85348189-85348208 | None:intergenic | 30.0% | |
| !! | GGTAGTTACATTTTAGAAAG+AGG | + | chr6_4:85348249-85348268 | None:intergenic | 30.0% |
| GTAAAATATGCAACAAAGAG+AGG | + | chr6_4:85348270-85348289 | None:intergenic | 30.0% | |
| TGTTTCATGACTACTACTAA+AGG | + | chr6_4:85348548-85348567 | None:intergenic | 30.0% | |
| TCTTCAATTCTTCTTCATTC+AGG | + | chr6_4:85346689-85346708 | None:intergenic | 30.0% | |
| ACAACAGCACTATAAAATAG+CGG | + | chr6_4:85346888-85346907 | None:intergenic | 30.0% | |
| !! | TATTTTATAGTGCTGTTGTG+TGG | - | chr6_4:85346889-85346908 | Msa1001540:intron | 30.0% |
| TTAACTTCGATATTGGAAAC+TGG | - | chr6_4:85347231-85347250 | Msa1001540:intron | 30.0% | |
| GAAAACTCAATATATCTTGC+AGG | - | chr6_4:85347437-85347456 | Msa1001540:intron | 30.0% | |
| ! | ACATTTTCATGGAGATGAAT+AGG | - | chr6_4:85347490-85347509 | Msa1001540:intron | 30.0% |
| ! | TAAGCAAGTGACAATTTTGT+AGG | + | chr6_4:85347641-85347660 | None:intergenic | 30.0% |
| CACAATATAACACTGAAACA+CGG | + | chr6_4:85347792-85347811 | None:intergenic | 30.0% | |
| GAAGTCAAAGTTAGTTGAAT+AGG | + | chr6_4:85348024-85348043 | None:intergenic | 30.0% | |
| ATTTCTATATGGACATCAAC+CGG | - | chr6_4:85348089-85348108 | Msa1001540:intron | 30.0% | |
| TCCAACAATCATAACATGAT+CGG | + | chr6_4:85348120-85348139 | None:intergenic | 30.0% | |
| AAATGGGAAAATATCAGTGA+GGG | + | chr6_4:85348188-85348207 | None:intergenic | 30.0% | |
| AAAATGGGAAAATATCAGTG+AGG | + | chr6_4:85348189-85348208 | None:intergenic | 30.0% | |
| !! | GGTAGTTACATTTTAGAAAG+AGG | + | chr6_4:85348249-85348268 | None:intergenic | 30.0% |
| GTAAAATATGCAACAAAGAG+AGG | + | chr6_4:85348270-85348289 | None:intergenic | 30.0% | |
| TGTTTCATGACTACTACTAA+AGG | + | chr6_4:85348548-85348567 | None:intergenic | 30.0% | |
| ATATCCAAAATGCTTACTCC+AGG | + | chr6_4:85346514-85346533 | None:intergenic | 35.0% | |
| ! | TTTTGGATATGTGTAGCAGT+TGG | - | chr6_4:85346524-85346543 | Msa1001540:intron | 35.0% |
| TTTGGATATGTGTAGCAGTT+GGG | - | chr6_4:85346525-85346544 | Msa1001540:intron | 35.0% | |
| AGAAGAATTGAAGAGAAACC+CGG | - | chr6_4:85346695-85346714 | Msa1001540:intron | 35.0% | |
| TTGTTAAACAGTGTCTACTG+CGG | + | chr6_4:85346821-85346840 | None:intergenic | 35.0% | |
| !! | GGTTGTAGCCATTTTGAATT+TGG | - | chr6_4:85346910-85346929 | Msa1001540:intron | 35.0% |
| TCTATTCTGCTAGAGAAACA+TGG | - | chr6_4:85347068-85347087 | Msa1001540:intron | 35.0% | |
| TTTCGATGTCATCACTAATG+TGG | - | chr6_4:85347186-85347205 | Msa1001540:intron | 35.0% | |
| ! | AAAGCCTCTTGACATTTTCA+TGG | - | chr6_4:85347479-85347498 | Msa1001540:intron | 35.0% |
| ATCTCCATGAAAATGTCAAG+AGG | + | chr6_4:85347486-85347505 | None:intergenic | 35.0% | |
| ACAAGATTGTCACCTCATTA+TGG | + | chr6_4:85347538-85347557 | None:intergenic | 35.0% | |
| ! | AATCTTGTCCGCTATCATTT+TGG | - | chr6_4:85347550-85347569 | Msa1001540:intron | 35.0% |
| TAGTTGAATAGGACCATAAG+AGG | + | chr6_4:85348013-85348032 | None:intergenic | 35.0% | |
| ! | GGTTGATGTCCATATAGAAA+TGG | + | chr6_4:85348090-85348109 | None:intergenic | 35.0% |
| TTTCTATATGGACATCAACC+GGG | - | chr6_4:85348090-85348109 | Msa1001540:intron | 35.0% | |
| ! | GGATCCTATTTTCATTATGC+AGG | - | chr6_4:85348137-85348156 | Msa1001540:intron | 35.0% |
| ! | TCCTATTTTCATTATGCAGG+AGG | - | chr6_4:85348140-85348159 | Msa1001540:intron | 35.0% |
| TCCTCCTGCATAATGAAAAT+AGG | + | chr6_4:85348144-85348163 | None:intergenic | 35.0% | |
| GAAGCTTGTCCTAACAAAAT+GGG | + | chr6_4:85348204-85348223 | None:intergenic | 35.0% | |
| TGAAGCTTGTCCTAACAAAA+TGG | + | chr6_4:85348205-85348224 | None:intergenic | 35.0% | |
| !!! | ACTTCTTTTTTTGTAGGCTG+TGG | - | chr6_4:85348638-85348657 | Msa1001540:CDS | 35.0% |
| CTAGAGTACACAATGTACAT+AGG | + | chr6_4:85348693-85348712 | None:intergenic | 35.0% | |
| ATATCCAAAATGCTTACTCC+AGG | + | chr6_4:85346514-85346533 | None:intergenic | 35.0% | |
| ! | TTTTGGATATGTGTAGCAGT+TGG | - | chr6_4:85346524-85346543 | Msa1001540:intron | 35.0% |
| TTTGGATATGTGTAGCAGTT+GGG | - | chr6_4:85346525-85346544 | Msa1001540:intron | 35.0% | |
| AGAAGAATTGAAGAGAAACC+CGG | - | chr6_4:85346695-85346714 | Msa1001540:intron | 35.0% | |
| TTGTTAAACAGTGTCTACTG+CGG | + | chr6_4:85346821-85346840 | None:intergenic | 35.0% | |
| !! | GGTTGTAGCCATTTTGAATT+TGG | - | chr6_4:85346910-85346929 | Msa1001540:intron | 35.0% |
| TCTATTCTGCTAGAGAAACA+TGG | - | chr6_4:85347068-85347087 | Msa1001540:intron | 35.0% | |
| TTTCGATGTCATCACTAATG+TGG | - | chr6_4:85347186-85347205 | Msa1001540:intron | 35.0% | |
| ! | AAAGCCTCTTGACATTTTCA+TGG | - | chr6_4:85347479-85347498 | Msa1001540:intron | 35.0% |
| ATCTCCATGAAAATGTCAAG+AGG | + | chr6_4:85347486-85347505 | None:intergenic | 35.0% | |
| ACAAGATTGTCACCTCATTA+TGG | + | chr6_4:85347538-85347557 | None:intergenic | 35.0% | |
| ! | AATCTTGTCCGCTATCATTT+TGG | - | chr6_4:85347550-85347569 | Msa1001540:intron | 35.0% |
| TAGTTGAATAGGACCATAAG+AGG | + | chr6_4:85348013-85348032 | None:intergenic | 35.0% | |
| ! | GGTTGATGTCCATATAGAAA+TGG | + | chr6_4:85348090-85348109 | None:intergenic | 35.0% |
| TTTCTATATGGACATCAACC+GGG | - | chr6_4:85348090-85348109 | Msa1001540:intron | 35.0% | |
| ! | GGATCCTATTTTCATTATGC+AGG | - | chr6_4:85348137-85348156 | Msa1001540:intron | 35.0% |
| ! | TCCTATTTTCATTATGCAGG+AGG | - | chr6_4:85348140-85348159 | Msa1001540:intron | 35.0% |
| TCCTCCTGCATAATGAAAAT+AGG | + | chr6_4:85348144-85348163 | None:intergenic | 35.0% | |
| GAAGCTTGTCCTAACAAAAT+GGG | + | chr6_4:85348204-85348223 | None:intergenic | 35.0% | |
| TGAAGCTTGTCCTAACAAAA+TGG | + | chr6_4:85348205-85348224 | None:intergenic | 35.0% | |
| !!! | ACTTCTTTTTTTGTAGGCTG+TGG | - | chr6_4:85348638-85348657 | Msa1001540:CDS | 35.0% |
| CTAGAGTACACAATGTACAT+AGG | + | chr6_4:85348693-85348712 | None:intergenic | 35.0% | |
| GCAGAATCTGATGACCTAAA+GGG | + | chr6_4:85346394-85346413 | None:intergenic | 40.0% | |
| TGCAGAATCTGATGACCTAA+AGG | + | chr6_4:85346395-85346414 | None:intergenic | 40.0% | |
| ATTGCTAGGTGGGAAAACTT+TGG | + | chr6_4:85346488-85346507 | None:intergenic | 40.0% | |
| ! | TACTCCTGGAGTAAGCATTT+TGG | - | chr6_4:85346507-85346526 | Msa1001540:intron | 40.0% |
| AACTCGTTCTTGCTTGTATC+CGG | + | chr6_4:85346655-85346674 | None:intergenic | 40.0% | |
| TACAAGCAAGAACGAGTTGT+AGG | - | chr6_4:85346657-85346676 | Msa1001540:intron | 40.0% | |
| CAAGAACGAGTTGTAGGATT+AGG | - | chr6_4:85346663-85346682 | Msa1001540:intron | 40.0% | |
| ATAGAAATTGTTGCTGCCGT+AGG | - | chr6_4:85347099-85347118 | Msa1001540:intron | 40.0% | |
| GTACAAGTGATGCATGCTAT+TGG | - | chr6_4:85347253-85347272 | Msa1001540:intron | 40.0% | |
| ! | AAATGTCAAGAGGCTTTGTC+AGG | + | chr6_4:85347476-85347495 | None:intergenic | 40.0% |
| ATGAATAGGATACTCAAGCC+AGG | - | chr6_4:85347504-85347523 | Msa1001540:intron | 40.0% | |
| ! | ATCCATCCTCAGAACTTTTC+TGG | - | chr6_4:85347697-85347716 | Msa1001540:intron | 40.0% |
| AAGTGTCCAGAAAAGTTCTG+AGG | + | chr6_4:85347706-85347725 | None:intergenic | 40.0% | |
| TATTGGTCCTGTACCTCTTA+TGG | - | chr6_4:85347997-85348016 | Msa1001540:intron | 40.0% | |
| ! | AATAGGACCATAAGAGGTAC+AGG | + | chr6_4:85348007-85348026 | None:intergenic | 40.0% |
| TTCTATATGGACATCAACCG+GGG | - | chr6_4:85348091-85348110 | Msa1001540:intron | 40.0% | |
| GCCGATCATGTTATGATTGT+TGG | - | chr6_4:85348116-85348135 | Msa1001540:intron | 40.0% | |
| CAACATGGATGCATCAGAAA+TGG | + | chr6_4:85348320-85348339 | None:intergenic | 40.0% | |
| GTGGATATATCTCCAAATCC+TGG | - | chr6_4:85348657-85348676 | Msa1001540:CDS | 40.0% | |
| GCAGAATCTGATGACCTAAA+GGG | + | chr6_4:85346394-85346413 | None:intergenic | 40.0% | |
| TGCAGAATCTGATGACCTAA+AGG | + | chr6_4:85346395-85346414 | None:intergenic | 40.0% | |
| ATTGCTAGGTGGGAAAACTT+TGG | + | chr6_4:85346488-85346507 | None:intergenic | 40.0% | |
| ! | TACTCCTGGAGTAAGCATTT+TGG | - | chr6_4:85346507-85346526 | Msa1001540:intron | 40.0% |
| AACTCGTTCTTGCTTGTATC+CGG | + | chr6_4:85346655-85346674 | None:intergenic | 40.0% | |
| TACAAGCAAGAACGAGTTGT+AGG | - | chr6_4:85346657-85346676 | Msa1001540:intron | 40.0% | |
| CAAGAACGAGTTGTAGGATT+AGG | - | chr6_4:85346663-85346682 | Msa1001540:intron | 40.0% | |
| ATAGAAATTGTTGCTGCCGT+AGG | - | chr6_4:85347099-85347118 | Msa1001540:intron | 40.0% | |
| GTACAAGTGATGCATGCTAT+TGG | - | chr6_4:85347253-85347272 | Msa1001540:intron | 40.0% | |
| ! | AAATGTCAAGAGGCTTTGTC+AGG | + | chr6_4:85347476-85347495 | None:intergenic | 40.0% |
| ATGAATAGGATACTCAAGCC+AGG | - | chr6_4:85347504-85347523 | Msa1001540:intron | 40.0% | |
| ! | ATCCATCCTCAGAACTTTTC+TGG | - | chr6_4:85347697-85347716 | Msa1001540:intron | 40.0% |
| AAGTGTCCAGAAAAGTTCTG+AGG | + | chr6_4:85347706-85347725 | None:intergenic | 40.0% | |
| TATTGGTCCTGTACCTCTTA+TGG | - | chr6_4:85347997-85348016 | Msa1001540:intron | 40.0% | |
| ! | AATAGGACCATAAGAGGTAC+AGG | + | chr6_4:85348007-85348026 | None:intergenic | 40.0% |
| TTCTATATGGACATCAACCG+GGG | - | chr6_4:85348091-85348110 | Msa1001540:intron | 40.0% | |
| GCCGATCATGTTATGATTGT+TGG | - | chr6_4:85348116-85348135 | Msa1001540:intron | 40.0% | |
| CAACATGGATGCATCAGAAA+TGG | + | chr6_4:85348320-85348339 | None:intergenic | 40.0% | |
| GTGGATATATCTCCAAATCC+TGG | - | chr6_4:85348657-85348676 | Msa1001540:CDS | 40.0% | |
| TCGATGTGTGTTACGAATCG+AGG | + | chr6_4:85346430-85346449 | None:intergenic | 45.0% | |
| TAGTCAGAGCAGCAATTGCA+GGG | + | chr6_4:85346456-85346475 | None:intergenic | 45.0% | |
| TTAGTCAGAGCAGCAATTGC+AGG | + | chr6_4:85346457-85346476 | None:intergenic | 45.0% | |
| !! | CTTACTCCAGGAGTATTGCT+AGG | + | chr6_4:85346502-85346521 | None:intergenic | 45.0% |
| ACTCGTTCTTGCTTGTATCC+GGG | + | chr6_4:85346654-85346673 | None:intergenic | 45.0% | |
| AGAAAGAGGGTTGTCTTACC+GGG | + | chr6_4:85346716-85346735 | None:intergenic | 45.0% | |
| CAGAAAGAGGGTTGTCTTAC+CGG | + | chr6_4:85346717-85346736 | None:intergenic | 45.0% | |
| AACCCTCTTTCTGTGCTATG+TGG | - | chr6_4:85346724-85346743 | Msa1001540:intron | 45.0% | |
| TGCCACATAGCACAGAAAGA+GGG | + | chr6_4:85346729-85346748 | None:intergenic | 45.0% | |
| TTGCCACATAGCACAGAAAG+AGG | + | chr6_4:85346730-85346749 | None:intergenic | 45.0% | |
| ! | CTGCGGCTTTATAGCATTGT+AGG | + | chr6_4:85346804-85346823 | None:intergenic | 45.0% |
| CTTGTACAGTATACTCCGTG+AGG | + | chr6_4:85347126-85347145 | None:intergenic | 45.0% | |
| AATAGGATACTCAAGCCAGG+TGG | - | chr6_4:85347507-85347526 | Msa1001540:intron | 45.0% | |
| !! | GTCCAGAAAAGTTCTGAGGA+TGG | + | chr6_4:85347702-85347721 | None:intergenic | 45.0% |
| ACCCAAGCTCGATTACTCTT+TGG | - | chr6_4:85347862-85347881 | Msa1001540:intron | 45.0% | |
| GCCAAAGAGTAATCGAGCTT+GGG | + | chr6_4:85347866-85347885 | None:intergenic | 45.0% | |
| TGCCAAAGAGTAATCGAGCT+TGG | + | chr6_4:85347867-85347886 | None:intergenic | 45.0% | |
| ATCAGTGAGGGAATTACCTG+AGG | + | chr6_4:85348176-85348195 | None:intergenic | 45.0% | |
| ATCAGAAATGGCTAGGTGTG+TGG | + | chr6_4:85348308-85348327 | None:intergenic | 45.0% | |
| TGGATGCATCAGAAATGGCT+AGG | + | chr6_4:85348315-85348334 | None:intergenic | 45.0% | |
| GTGACATTGTACCAATGCTG+AGG | - | chr6_4:85348607-85348626 | Msa1001540:CDS | 45.0% | |
| AGTTACATGAGCCTCAGCAT+TGG | + | chr6_4:85348621-85348640 | None:intergenic | 45.0% | |
| ATCTCCAAATCCTGGACACT+CGG | - | chr6_4:85348665-85348684 | Msa1001540:CDS | 45.0% | |
| TCGATGTGTGTTACGAATCG+AGG | + | chr6_4:85346430-85346449 | None:intergenic | 45.0% | |
| TAGTCAGAGCAGCAATTGCA+GGG | + | chr6_4:85346456-85346475 | None:intergenic | 45.0% | |
| TTAGTCAGAGCAGCAATTGC+AGG | + | chr6_4:85346457-85346476 | None:intergenic | 45.0% | |
| !! | CTTACTCCAGGAGTATTGCT+AGG | + | chr6_4:85346502-85346521 | None:intergenic | 45.0% |
| ACTCGTTCTTGCTTGTATCC+GGG | + | chr6_4:85346654-85346673 | None:intergenic | 45.0% | |
| AGAAAGAGGGTTGTCTTACC+GGG | + | chr6_4:85346716-85346735 | None:intergenic | 45.0% | |
| CAGAAAGAGGGTTGTCTTAC+CGG | + | chr6_4:85346717-85346736 | None:intergenic | 45.0% | |
| AACCCTCTTTCTGTGCTATG+TGG | - | chr6_4:85346724-85346743 | Msa1001540:intron | 45.0% | |
| TGCCACATAGCACAGAAAGA+GGG | + | chr6_4:85346729-85346748 | None:intergenic | 45.0% | |
| TTGCCACATAGCACAGAAAG+AGG | + | chr6_4:85346730-85346749 | None:intergenic | 45.0% | |
| ! | CTGCGGCTTTATAGCATTGT+AGG | + | chr6_4:85346804-85346823 | None:intergenic | 45.0% |
| CTTGTACAGTATACTCCGTG+AGG | + | chr6_4:85347126-85347145 | None:intergenic | 45.0% | |
| AATAGGATACTCAAGCCAGG+TGG | - | chr6_4:85347507-85347526 | Msa1001540:intron | 45.0% | |
| !! | GTCCAGAAAAGTTCTGAGGA+TGG | + | chr6_4:85347702-85347721 | None:intergenic | 45.0% |
| ACCCAAGCTCGATTACTCTT+TGG | - | chr6_4:85347862-85347881 | Msa1001540:intron | 45.0% | |
| GCCAAAGAGTAATCGAGCTT+GGG | + | chr6_4:85347866-85347885 | None:intergenic | 45.0% | |
| TGCCAAAGAGTAATCGAGCT+TGG | + | chr6_4:85347867-85347886 | None:intergenic | 45.0% | |
| ATCAGTGAGGGAATTACCTG+AGG | + | chr6_4:85348176-85348195 | None:intergenic | 45.0% | |
| ATCAGAAATGGCTAGGTGTG+TGG | + | chr6_4:85348308-85348327 | None:intergenic | 45.0% | |
| TGGATGCATCAGAAATGGCT+AGG | + | chr6_4:85348315-85348334 | None:intergenic | 45.0% | |
| GTGACATTGTACCAATGCTG+AGG | - | chr6_4:85348607-85348626 | Msa1001540:CDS | 45.0% | |
| AGTTACATGAGCCTCAGCAT+TGG | + | chr6_4:85348621-85348640 | None:intergenic | 45.0% | |
| ATCTCCAAATCCTGGACACT+CGG | - | chr6_4:85348665-85348684 | Msa1001540:CDS | 45.0% | |
| !!! | TTTTAATTAAATTTAAGTAT+TGG | + | chr6_4:85347010-85347029 | None:intergenic | 5.0% |
| !!! | TTTTAATTAAATTTAAGTAT+TGG | + | chr6_4:85347010-85347029 | None:intergenic | 5.0% |
| TTCCCACCTAGCAATACTCC+TGG | - | chr6_4:85346493-85346512 | Msa1001540:intron | 50.0% | |
| !! | CTCCAGGAGTATTGCTAGGT+GGG | + | chr6_4:85346498-85346517 | None:intergenic | 50.0% |
| !! | ACTCCAGGAGTATTGCTAGG+TGG | + | chr6_4:85346499-85346518 | None:intergenic | 50.0% |
| !! | TAGGTCAGCCATTTTCCACC+CGG | - | chr6_4:85346633-85346652 | Msa1001540:intron | 50.0% |
| GCTTGTATCCGGGTGGAAAA+TGG | + | chr6_4:85346644-85346663 | None:intergenic | 50.0% | |
| AAGACTTCGATAGCGCATCG+TGG | - | chr6_4:85346839-85346858 | Msa1001540:intron | 50.0% | |
| GTATACTCCGTGAGGACCTA+CGG | + | chr6_4:85347118-85347137 | None:intergenic | 50.0% | |
| GATACTCAAGCCAGGTGGAT+TGG | - | chr6_4:85347512-85347531 | Msa1001540:intron | 50.0% | |
| CTCATTATGGCCAATCCACC+TGG | + | chr6_4:85347525-85347544 | None:intergenic | 50.0% | |
| !! | CAGGTGGATTGGCCATAATG+AGG | - | chr6_4:85347523-85347542 | Msa1001540:intron | 50.0% |
| CATAACATGATCGGCATCCC+CGG | + | chr6_4:85348111-85348130 | None:intergenic | 50.0% | |
| AGGAGGATTTGAACCTCCTC+AGG | - | chr6_4:85348157-85348176 | Msa1001540:intron | 50.0% | |
| AGTGAGGGAATTACCTGAGG+AGG | + | chr6_4:85348173-85348192 | None:intergenic | 50.0% | |
| AAATGGCTAGGTGTGTGGAG+AGG | + | chr6_4:85348303-85348322 | None:intergenic | 50.0% | |
| TACATAGGATCCGAGTGTCC+AGG | + | chr6_4:85348678-85348697 | None:intergenic | 50.0% | |
| TTCCCACCTAGCAATACTCC+TGG | - | chr6_4:85346493-85346512 | Msa1001540:intron | 50.0% | |
| !! | CTCCAGGAGTATTGCTAGGT+GGG | + | chr6_4:85346498-85346517 | None:intergenic | 50.0% |
| !! | ACTCCAGGAGTATTGCTAGG+TGG | + | chr6_4:85346499-85346518 | None:intergenic | 50.0% |
| !! | TAGGTCAGCCATTTTCCACC+CGG | - | chr6_4:85346633-85346652 | Msa1001540:intron | 50.0% |
| GCTTGTATCCGGGTGGAAAA+TGG | + | chr6_4:85346644-85346663 | None:intergenic | 50.0% | |
| AAGACTTCGATAGCGCATCG+TGG | - | chr6_4:85346839-85346858 | Msa1001540:intron | 50.0% | |
| GTATACTCCGTGAGGACCTA+CGG | + | chr6_4:85347118-85347137 | None:intergenic | 50.0% | |
| GATACTCAAGCCAGGTGGAT+TGG | - | chr6_4:85347512-85347531 | Msa1001540:intron | 50.0% | |
| CTCATTATGGCCAATCCACC+TGG | + | chr6_4:85347525-85347544 | None:intergenic | 50.0% | |
| !! | CAGGTGGATTGGCCATAATG+AGG | - | chr6_4:85347523-85347542 | Msa1001540:intron | 50.0% |
| CATAACATGATCGGCATCCC+CGG | + | chr6_4:85348111-85348130 | None:intergenic | 50.0% | |
| AGGAGGATTTGAACCTCCTC+AGG | - | chr6_4:85348157-85348176 | Msa1001540:intron | 50.0% | |
| AGTGAGGGAATTACCTGAGG+AGG | + | chr6_4:85348173-85348192 | None:intergenic | 50.0% | |
| AAATGGCTAGGTGTGTGGAG+AGG | + | chr6_4:85348303-85348322 | None:intergenic | 50.0% | |
| TACATAGGATCCGAGTGTCC+AGG | + | chr6_4:85348678-85348697 | None:intergenic | 50.0% | |
| CGTTCTTGCTTGTATCCGGG+TGG | + | chr6_4:85346651-85346670 | None:intergenic | 55.0% | |
| GGATCCGAGTGTCCAGGATT+TGG | + | chr6_4:85348672-85348691 | None:intergenic | 55.0% | |
| CGTTCTTGCTTGTATCCGGG+TGG | + | chr6_4:85346651-85346670 | None:intergenic | 55.0% | |
| GGATCCGAGTGTCCAGGATT+TGG | + | chr6_4:85348672-85348691 | None:intergenic | 55.0% | |
| GTTGCTGCCGTAGGTCCTCA+CGG | - | chr6_4:85347108-85347127 | Msa1001540:intron | 60.0% | |
| GTTGCTGCCGTAGGTCCTCA+CGG | - | chr6_4:85347108-85347127 | Msa1001540:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 85346385 | 85348728 | 85346385 | ID=Msa1001540;Name=Msa1001540 |
| chr6_4 | mRNA | 85346385 | 85348728 | 85346385 | ID=Msa1001540-mRNA-1;Parent=Msa1001540;Name=Msa1001540-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.25|0.2|1|0.75|0.6|5|0|173 |
| chr6_4 | exon | 85348567 | 85348728 | 85348567 | ID=Msa1001540-mRNA-1:exon:16758;Parent=Msa1001540-mRNA-1 |
| chr6_4 | exon | 85347906 | 85347992 | 85347906 | ID=Msa1001540-mRNA-1:exon:16757;Parent=Msa1001540-mRNA-1 |
| chr6_4 | exon | 85347569 | 85347654 | 85347569 | ID=Msa1001540-mRNA-1:exon:16756;Parent=Msa1001540-mRNA-1 |
| chr6_4 | exon | 85346935 | 85347043 | 85346935 | ID=Msa1001540-mRNA-1:exon:16755;Parent=Msa1001540-mRNA-1 |
| chr6_4 | exon | 85346385 | 85346459 | 85346385 | ID=Msa1001540-mRNA-1:exon:16754;Parent=Msa1001540-mRNA-1 |
| chr6_4 | CDS | 85348567 | 85348728 | 85348567 | ID=Msa1001540-mRNA-1:cds;Parent=Msa1001540-mRNA-1 |
| chr6_4 | CDS | 85347906 | 85347992 | 85347906 | ID=Msa1001540-mRNA-1:cds;Parent=Msa1001540-mRNA-1 |
| chr6_4 | CDS | 85347569 | 85347654 | 85347569 | ID=Msa1001540-mRNA-1:cds;Parent=Msa1001540-mRNA-1 |
| chr6_4 | CDS | 85346935 | 85347043 | 85346935 | ID=Msa1001540-mRNA-1:cds;Parent=Msa1001540-mRNA-1 |
| chr6_4 | CDS | 85346385 | 85346459 | 85346385 | ID=Msa1001540-mRNA-1:cds;Parent=Msa1001540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
