AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0630910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0630910 MtrunA17_Chr4g0008321 85.163 337 13 3 1 308 1 329 0.0 539
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0630910 AT3G09210.1 49.112 338 124 7 3 306 7 330 9.95e-96 286

Find 74 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAATTCTAACTCTTTAT+TGG 0.148841 4_3:-13415646 None:intergenic
GATGGTGTTGGTGGGTTTAT+TGG 0.167069 4_3:+13413999 Msa0630910:CDS
TCCAATTCTAACTCTTTATT+GGG 0.258560 4_3:-13415645 None:intergenic
GCAGAACCTGTTACAAGTTT+AGG 0.266577 4_3:-13415768 None:intergenic
TGTGACTGTTAGTTGGTTAG+AGG 0.282285 4_3:-13415718 None:intergenic
TTGTCGAATCAAAGCCTAAA+AGG 0.289939 4_3:+13415682 Msa0630910:CDS
TGAGGCGCTTGCTCGTTCTT+TGG 0.327264 4_3:+13412543 Msa0630910:CDS
TGTTCGTGTTTCTCGTGTTA+AGG 0.330776 4_3:+13412507 Msa0630910:CDS
GGGGTTTGGTGGAGAGAGAG+GGG 0.345848 4_3:-13412261 None:intergenic
GCCAGTAGCTGAGGATGATA+TGG 0.369363 4_3:+13415521 Msa0630910:CDS
TTACTGAGCCTAAAATTTGT+AGG 0.372362 4_3:+13416724 Msa0630910:three_prime_UTR
AAAATCAAAGCCTCTGTTCC+CGG 0.379949 4_3:+13413917 Msa0630910:CDS
TCATCCTCAGCTACTGGCCT+TGG 0.387686 4_3:-13415516 None:intergenic
GATTGGTATGCTTGAAACTT+TGG 0.392910 4_3:+13412160 Msa0630910:five_prime_UTR
CTTGATAATCTCATGAAGTT+AGG 0.396459 4_3:+13412469 Msa0630910:CDS
GTTCGTGTTTCTCGTGTTAA+GGG 0.401772 4_3:+13412508 Msa0630910:CDS
TCCCAATAAAGAGTTAGAAT+TGG 0.402290 4_3:+13415644 Msa0630910:CDS
GAGAGAGCAACGCAACAAAC+TGG 0.402702 4_3:+13412374 Msa0630910:CDS
GGAGGTGGAGGTGACGGAGG+TGG 0.403354 4_3:-13412299 None:intergenic
TGCTTACGTGTTTCCAACCT+TGG 0.407264 4_3:-13414024 None:intergenic
CGGTTATGACTTAATTGGTA+TGG 0.409209 4_3:+13412109 None:intergenic
GATAGAAGTAGAAGATGAAA+GGG 0.426555 4_3:+13412194 Msa0630910:exon
GGGTTTGGTGGAGAGAGAGG+GGG 0.431000 4_3:-13412260 None:intergenic
CTTCTTCTGTGACTGTTAGT+TGG 0.434285 4_3:-13415725 None:intergenic
CAAACCTTAAAGTCGATATC+AGG 0.436160 4_3:-13412577 None:intergenic
TGTCGAATCAAAGCCTAAAA+GGG 0.441749 4_3:+13415683 Msa0630910:CDS
AGACAATTAATAATAGAGAT+TGG 0.442473 4_3:+13412143 Msa0630910:five_prime_UTR
GGGGTGTAGAAGCGTGGTGG+TGG 0.443964 4_3:-13412241 None:intergenic
TACTGAGCCTAAAATTTGTA+GGG 0.449157 4_3:+13416725 Msa0630910:three_prime_UTR
GGTGGAGGTGACGGAGGTGG+CGG 0.456125 4_3:-13412296 None:intergenic
TATGGAAGCAATCTTCAAAC+AGG 0.463026 4_3:+13415539 Msa0630910:CDS
TCCATATCATCCTCAGCTAC+TGG 0.464176 4_3:-13415522 None:intergenic
AGATAGAAGTAGAAGATGAA+AGG 0.469203 4_3:+13412193 Msa0630910:exon
GGAGGAGGTGGAGGTGACGG+AGG 0.472236 4_3:-13412302 None:intergenic
GGATGCTAACGCTTCACCTA+TGG 0.494851 4_3:+13412215 Msa0630910:CDS
TAACGGCATTAGTTAGTCTC+TGG 0.497824 4_3:-13416519 None:intergenic
GAACAATTTCACTAACATCT+AGG 0.499446 4_3:-13416497 None:intergenic
CTAACTTCATGAGATTATCA+AGG 0.505513 4_3:-13412468 None:intergenic
TGGTGGGTTTATTGGATCCA+AGG 0.512573 4_3:+13414007 Msa0630910:CDS
TGAAACATACCATCAGGAAA+AGG 0.518160 4_3:-13416550 None:intergenic
AGAGACTAACTAATGCCGTT+AGG 0.528762 4_3:+13416521 Msa0630910:exon
AAAAGACTGTCGCAAACTCT+GGG 0.535158 4_3:+13415619 Msa0630910:CDS
AAATCAAAGCCTCTGTTCCC+GGG 0.535432 4_3:+13413918 Msa0630910:CDS
TATTATTGTGAGACATGTAC+TGG 0.535897 4_3:+13416698 Msa0630910:three_prime_UTR
TGAAGTTAGGTCCTCAATGG+TGG 0.544907 4_3:+13412482 Msa0630910:CDS
AAAAGAGAATAAATCATGGA+TGG 0.549712 4_3:+13412435 Msa0630910:CDS
GGGTTTATTGGATCCAAGGT+TGG 0.549914 4_3:+13414011 Msa0630910:CDS
TCATGAAGTTAGGTCCTCAA+TGG 0.559956 4_3:+13412479 Msa0630910:CDS
TCCGAATATGGTAAAATGCA+CGG 0.561454 4_3:-13416457 None:intergenic
GAGGTGGCGGAGATTGAGAG+AGG 0.572402 4_3:-13412283 None:intergenic
AAAGAGTATGATGGTGTTGG+TGG 0.572562 4_3:+13413990 Msa0630910:CDS
AGCAATCTTCAAACAGGCAA+AGG 0.575995 4_3:+13415545 Msa0630910:CDS
TAAACCAAGGCCAGTAGCTG+AGG 0.602508 4_3:+13415512 Msa0630910:CDS
AATCTTCAAACAGGCAAAGG+TGG 0.603658 4_3:+13415548 Msa0630910:CDS
AGGTGGCGGAGATTGAGAGA+GGG 0.608725 4_3:-13412282 None:intergenic
ATAAAAGAGTATGATGGTGT+TGG 0.611602 4_3:+13413987 Msa0630910:CDS
AAAATACAACCCGGGAACAG+AGG 0.618389 4_3:-13413927 None:intergenic
AAGAGTATGATGGTGTTGGT+GGG 0.620026 4_3:+13413991 Msa0630910:CDS
GAAGTTAGGTCCTCAATGGT+GGG 0.620845 4_3:+13412483 Msa0630910:CDS
GTGGCGGAGATTGAGAGAGG+GGG 0.622580 4_3:-13412280 None:intergenic
AAATGGACTTCATCGACAAG+TGG 0.623224 4_3:-13416626 None:intergenic
GAGCAACGCAACAAACTGGA+AGG 0.623859 4_3:+13412378 Msa0630910:CDS
ACTGAGCCTAAAATTTGTAG+GGG 0.624961 4_3:+13416726 Msa0630910:three_prime_UTR
GACTACATAAAAGAGTATGA+TGG 0.627233 4_3:+13413981 Msa0630910:CDS
ATAATATACAAGTATGCACT+AGG 0.633709 4_3:-13416676 None:intergenic
GGTGGCGGAGATTGAGAGAG+GGG 0.634140 4_3:-13412281 None:intergenic
AAAGGCAGATTAATAAACCA+AGG 0.636259 4_3:+13415499 Msa0630910:CDS
GTCGAATCAAAGCCTAAAAG+GGG 0.641344 4_3:+13415684 Msa0630910:CDS
AGCGTGGTGGTGGATTCCAT+AGG 0.665297 4_3:-13412231 None:intergenic
ACACGAACAACCCACCATTG+AGG 0.668787 4_3:-13412493 None:intergenic
TAAGGGTCAGTATACTGCTG+AGG 0.684339 4_3:+13412525 Msa0630910:CDS
AGTAAAACTTCGAAGAGTCG+CGG 0.685502 4_3:+13416580 Msa0630910:three_prime_UTR
AGGAAAAGGAGAGAACCTAA+CGG 0.708524 4_3:-13416536 None:intergenic
GAATATGGTAAAATGCACGG+TGG 0.797672 4_3:-13416454 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAGTGATATATTTTTAT+TGG + chr4_3:13415080-13415099 Msa0630910:intron 10.0%
!!! ATATAAAGTCTTATAAAATA+AGG - chr4_3:13415339-13415358 None:intergenic 10.0%
!!! TATTTTATAAGACTTTATAT+TGG + chr4_3:13415339-13415358 Msa0630910:intron 10.0%
!!! TTAAAATAATGTTGATTTAA+TGG + chr4_3:13416151-13416170 Msa0630910:intron 10.0%
!!! TAAAATAATGTTGATTTAAT+GGG + chr4_3:13416152-13416171 Msa0630910:intron 10.0%
!!! TATTTTGTGTTTAAATACTT+CGG - chr4_3:13413196-13413215 None:intergenic 15.0%
!!! TTTTAAACCAAAAAAAGATA+GGG - chr4_3:13413702-13413721 None:intergenic 15.0%
!! AAAAGATTTAAGAGAAAATA+GGG - chr4_3:13414526-13414545 None:intergenic 15.0%
!! AAAAAGATTTAAGAGAAAAT+AGG - chr4_3:13414527-13414546 None:intergenic 15.0%
!!! TTTTCTCTTAAATCTTTTTA+TGG + chr4_3:13414528-13414547 Msa0630910:intron 15.0%
!! GTTAAATATTTATCTTTGAT+TGG + chr4_3:13414587-13414606 Msa0630910:intron 15.0%
!! ATGCTTGTAATTATTAATTT+CGG + chr4_3:13415385-13415404 Msa0630910:intron 15.0%
!!! TTTAGCTTTTCTTTAAAAAA+TGG - chr4_3:13416646-13416665 None:intergenic 15.0%
!! AGACAATTAATAATAGAGAT+TGG + chr4_3:13412143-13412162 Msa0630910:five_prime_UTR 20.0%
!! AAACAAAGACATTAACTAAA+CGG - chr4_3:13412889-13412908 None:intergenic 20.0%
!! AATATAATCGCTAGAATAAT+AGG + chr4_3:13413212-13413231 Msa0630910:intron 20.0%
!!! TAGTTTTAAATTAGTTCAGA+TGG + chr4_3:13413443-13413462 Msa0630910:intron 20.0%
!!! GATTGAAATTTTTCAATTCT+AGG + chr4_3:13413474-13413493 Msa0630910:intron 20.0%
!!! TATTTTACCCTATCTTTTTT+TGG + chr4_3:13413692-13413711 Msa0630910:intron 20.0%
!!! GTTTTAAACCAAAAAAAGAT+AGG - chr4_3:13413703-13413722 None:intergenic 20.0%
!! ACTTCTTATTATGAATGAAT+AGG - chr4_3:13414410-13414429 None:intergenic 20.0%
!!! TAAATCTTTTTATGGATAGT+TGG + chr4_3:13414536-13414555 Msa0630910:intron 20.0%
!!! AAATCTTTTTATGGATAGTT+GGG + chr4_3:13414537-13414556 Msa0630910:intron 20.0%
!! TATCAAATGACAAAAGAAAA+GGG - chr4_3:13414975-13414994 None:intergenic 20.0%
!! ATATCAAATGACAAAAGAAA+AGG - chr4_3:13414976-13414995 None:intergenic 20.0%
!!! TTGAATCTTGAATTATTTTG+AGG + chr4_3:13415001-13415020 Msa0630910:intron 20.0%
!! TTATAAGACTTTATATTGGA+TGG + chr4_3:13415343-13415362 Msa0630910:intron 20.0%
!! ATCTAATGTGTATCTAAATT+GGG - chr4_3:13416287-13416306 None:intergenic 20.0%
!!! CCATGATTTATTCTCTTTTT+TGG - chr4_3:13412434-13412453 None:intergenic 25.0%
! CCAAAAAAGAGAATAAATCA+TGG + chr4_3:13412431-13412450 Msa0630910:CDS 25.0%
! AAAAGAGAATAAATCATGGA+TGG + chr4_3:13412435-13412454 Msa0630910:CDS 25.0%
!!! TTGTGTTGTTCATTTTGTTA+TGG + chr4_3:13412656-13412675 Msa0630910:intron 25.0%
! GTTATGGATAAGAATAGAAA+TGG + chr4_3:13412672-13412691 Msa0630910:intron 25.0%
!!! ATTTCTTCAATTTTAGAGCA+CGG - chr4_3:13413362-13413381 None:intergenic 25.0%
! TTGCTTGATCATTAATTTCA+TGG + chr4_3:13413533-13413552 Msa0630910:intron 25.0%
!! TCTTTTATGTAGTCATGTAA+TGG - chr4_3:13413975-13413994 None:intergenic 25.0%
!! TTCAATGCATTGCTAATTTT+TGG + chr4_3:13414060-13414079 Msa0630910:intron 25.0%
! AATTATTATCAGTGTTTGCT+AGG - chr4_3:13414257-13414276 None:intergenic 25.0%
! CAAGTACTCAAATCAAATAA+TGG - chr4_3:13414442-13414461 None:intergenic 25.0%
! ATATGGTAATCAGTATCTTA+CGG + chr4_3:13414759-13414778 Msa0630910:intron 25.0%
! ATCTCTTGTATGTATCTATT+TGG + chr4_3:13414834-13414853 Msa0630910:intron 25.0%
! ATACAAAGTTGACAAAATAG+TGG - chr4_3:13414945-13414964 None:intergenic 25.0%
! ATCAAATGACAAAAGAAAAG+GGG - chr4_3:13414974-13414993 None:intergenic 25.0%
! CTTTATAGAAGTAGATCATT+CGG - chr4_3:13415208-13415227 None:intergenic 25.0%
! AAAGTATACGTTATACTGAA+CGG + chr4_3:13415224-13415243 Msa0630910:intron 25.0%
!!! ATATTGGATGGTGTTTTTTT+TGG + chr4_3:13415355-13415374 Msa0630910:intron 25.0%
! CAAATGATAAAACAATTGAG+AGG - chr4_3:13415474-13415493 None:intergenic 25.0%
!! GTTTTATCATTTGCAGAAAA+AGG + chr4_3:13415481-13415500 Msa0630910:intron 25.0%
! TCCAATTCTAACTCTTTATT+GGG - chr4_3:13415648-13415667 None:intergenic 25.0%
! ATCCAATTCTAACTCTTTAT+TGG - chr4_3:13415649-13415668 None:intergenic 25.0%
! AAAAAACCTAAACTTGTAAC+AGG + chr4_3:13415762-13415781 Msa0630910:intron 25.0%
!!! ATTATATCCGGATCATTTTT+AGG + chr4_3:13415798-13415817 Msa0630910:intron 25.0%
!!! TTATATCCGGATCATTTTTA+GGG + chr4_3:13415799-13415818 Msa0630910:intron 25.0%
! ATTTCAATGAATTCTAGTGA+AGG - chr4_3:13415878-13415897 None:intergenic 25.0%
!! GATGTTTATGCAGATATTTT+AGG - chr4_3:13415992-13416011 None:intergenic 25.0%
! GATCTAATGTGTATCTAAAT+TGG - chr4_3:13416288-13416307 None:intergenic 25.0%
! ATAATATACAAGTATGCACT+AGG - chr4_3:13416679-13416698 None:intergenic 25.0%
!!! GCAACTGTTTTTTAAAACAT+TGG - chr4_3:13416804-13416823 None:intergenic 25.0%
AGATAGAAGTAGAAGATGAA+AGG + chr4_3:13412193-13412212 Msa0630910:exon 30.0%
GATAGAAGTAGAAGATGAAA+GGG + chr4_3:13412194-13412213 Msa0630910:exon 30.0%
CTAACTTCATGAGATTATCA+AGG - chr4_3:13412471-13412490 None:intergenic 30.0%
! CTTGATAATCTCATGAAGTT+AGG + chr4_3:13412469-13412488 Msa0630910:CDS 30.0%
!!! TTTTCCTGATATCGACTTTA+AGG + chr4_3:13412573-13412592 Msa0630910:CDS 30.0%
!!! GTTTGTGTCTGTGTTTTTTA+AGG + chr4_3:13412595-13412614 Msa0630910:intron 30.0%
!!! AGGTTGTTGTTTTTGTTTTC+TGG + chr4_3:13412615-13412634 Msa0630910:intron 30.0%
!!! GTAGTTTTTTCTTAACCATC+CGG + chr4_3:13412710-13412729 Msa0630910:intron 30.0%
! GGCTAATGATTATTCTAGTT+AGG + chr4_3:13412777-13412796 Msa0630910:intron 30.0%
! TTCTAGTTAGGAATGAAACT+CGG + chr4_3:13412789-13412808 Msa0630910:intron 30.0%
! TCTTTGTTTGAATGAGACTT+TGG + chr4_3:13412900-13412919 Msa0630910:intron 30.0%
AATGAGACTTTGGATTTATG+TGG + chr4_3:13412910-13412929 Msa0630910:intron 30.0%
GAGTTGAGTTTGAATCATTT+AGG + chr4_3:13413024-13413043 Msa0630910:intron 30.0%
TTGAGTTTGAATCATTTAGG+AGG + chr4_3:13413027-13413046 Msa0630910:intron 30.0%
AGTTGAACGTAAATCATTGT+TGG + chr4_3:13413053-13413072 Msa0630910:intron 30.0%
GTTGAACGTAAATCATTGTT+GGG + chr4_3:13413054-13413073 Msa0630910:intron 30.0%
TAGGTATGACTCATAGTTTA+CGG + chr4_3:13413088-13413107 Msa0630910:intron 30.0%
GCTAGAATAATAGGCATAAT+TGG + chr4_3:13413221-13413240 Msa0630910:intron 30.0%
! TATCTGTTTTCTTTTGAACG+AGG + chr4_3:13413291-13413310 Msa0630910:intron 30.0%
! TCATTAATTTCATGGACTGA+AGG + chr4_3:13413541-13413560 Msa0630910:intron 30.0%
!! ATGCTGTTTCATATGATGTT+TGG + chr4_3:13413800-13413819 Msa0630910:intron 30.0%
GTTGTTTATTTATTGATCCG+TGG + chr4_3:13413822-13413841 Msa0630910:intron 30.0%
! TCTTCAATCTCTTTTTCTCA+TGG - chr4_3:13413881-13413900 None:intergenic 30.0%
! GACTACATAAAAGAGTATGA+TGG + chr4_3:13413981-13414000 Msa0630910:CDS 30.0%
! ATAAAAGAGTATGATGGTGT+TGG + chr4_3:13413987-13414006 Msa0630910:CDS 30.0%
!! ACGATTCATTGTTTTGTTAG+AGG - chr4_3:13414158-13414177 None:intergenic 30.0%
ACACAACTTCAAATATGTTG+TGG - chr4_3:13414197-13414216 None:intergenic 30.0%
! ACATATTTGAAGTTGTGTCT+AGG + chr4_3:13414199-13414218 Msa0630910:intron 30.0%
!! AACTTGATGGCATTGATATA+AGG + chr4_3:13414464-13414483 Msa0630910:intron 30.0%
TAGAAGACAAAACTTGAATC+AGG - chr4_3:13414492-13414511 None:intergenic 30.0%
!! TGATTCAAGTTTTGTCTTCT+AGG + chr4_3:13414491-13414510 Msa0630910:intron 30.0%
! TTTTTACGCTGTACTTCATA+TGG + chr4_3:13414742-13414761 Msa0630910:intron 30.0%
CGATTCACGATTCAAAAAAT+AGG + chr4_3:13415132-13415151 Msa0630910:intron 30.0%
TGATTATAGTTCATACTGAG+TGG + chr4_3:13415258-13415277 Msa0630910:intron 30.0%
ACATTGAGACATTAGACAAA+AGG - chr4_3:13415422-13415441 None:intergenic 30.0%
AAAGGCAGATTAATAAACCA+AGG + chr4_3:13415499-13415518 Msa0630910:CDS 30.0%
TCCCAATAAAGAGTTAGAAT+TGG + chr4_3:13415644-13415663 Msa0630910:CDS 30.0%
ATATCATGGTGAAATCTGAT+TGG - chr4_3:13415951-13415970 None:intergenic 30.0%
TCTGTGTAGTTAGATTTGAT+CGG + chr4_3:13416010-13416029 Msa0630910:intron 30.0%
TGTTTATGCGAAACTTAAAC+TGG + chr4_3:13416118-13416137 Msa0630910:intron 30.0%
! TATGTTCTCTTTTCCGAATA+TGG - chr4_3:13416472-13416491 None:intergenic 30.0%
GAACAATTTCACTAACATCT+AGG - chr4_3:13416500-13416519 None:intergenic 30.0%
TATTATTGTGAGACATGTAC+TGG + chr4_3:13416698-13416717 Msa0630910:three_prime_UTR 30.0%
TTACTGAGCCTAAAATTTGT+AGG + chr4_3:13416724-13416743 Msa0630910:three_prime_UTR 30.0%
TACTGAGCCTAAAATTTGTA+GGG + chr4_3:13416725-13416744 Msa0630910:three_prime_UTR 30.0%
! ACAAATCCCCTACAAATTTT+AGG - chr4_3:13416735-13416754 None:intergenic 30.0%
GATTGGTATGCTTGAAACTT+TGG + chr4_3:13412160-13412179 Msa0630910:five_prime_UTR 35.0%
CAAACCTTAAAGTCGATATC+AGG - chr4_3:13412580-13412599 None:intergenic 35.0%
ACTTAACTTCCGACAAAACA+CGG - chr4_3:13412750-13412769 None:intergenic 35.0%
GCTCAAATAGTTAATGAGCT+TGG - chr4_3:13412839-13412858 None:intergenic 35.0%
ACTATTTGAGCTCAAACACT+TGG + chr4_3:13412848-13412867 Msa0630910:intron 35.0%
AGACTTTGGATTTATGTGGA+TGG + chr4_3:13412914-13412933 Msa0630910:intron 35.0%
TTTGGATTTATGTGGATGGA+GGG + chr4_3:13412918-13412937 Msa0630910:intron 35.0%
AACGTAAATCATTGTTGGGT+TGG + chr4_3:13413058-13413077 Msa0630910:intron 35.0%
ACGTAAATCATTGTTGGGTT+GGG + chr4_3:13413059-13413078 Msa0630910:intron 35.0%
GAATAATAGGCATAATTGGC+CGG + chr4_3:13413225-13413244 Msa0630910:intron 35.0%
AACGCAAACAAAGAACATAC+AGG - chr4_3:13413266-13413285 None:intergenic 35.0%
GAAAATGAACCATCACAGTT+TGG - chr4_3:13413615-13413634 None:intergenic 35.0%
CTCCATCCAAACATATTGAT+TGG + chr4_3:13413724-13413743 Msa0630910:intron 35.0%
CTCCAATCAATATGTTTGGA+TGG - chr4_3:13413729-13413748 None:intergenic 35.0%
CAAGCTCCAATCAATATGTT+TGG - chr4_3:13413733-13413752 None:intergenic 35.0%
GAGAAAAAGAGATTGAAGAG+TGG + chr4_3:13413882-13413901 Msa0630910:CDS 35.0%
!! AGGCTTTGATTTTACAGAGA+TGG - chr4_3:13413910-13413929 None:intergenic 35.0%
ATCTCAGAAAAATACAACCC+GGG - chr4_3:13413938-13413957 None:intergenic 35.0%
CATCTCAGAAAAATACAACC+CGG - chr4_3:13413939-13413958 None:intergenic 35.0%
GTTAGAGGACTTAATGAACA+TGG - chr4_3:13414143-13414162 None:intergenic 35.0%
! TATTTGAAGTTGTGTCTAGG+AGG + chr4_3:13414202-13414221 Msa0630910:intron 35.0%
CACACCTTTAATCTAAGTGT+TGG + chr4_3:13414349-13414368 Msa0630910:intron 35.0%
ACTAATGACATCCAGCTATA+TGG - chr4_3:13414377-13414396 None:intergenic 35.0%
TTGAGTACTTGTCAACTTGA+TGG + chr4_3:13414451-13414470 Msa0630910:intron 35.0%
!! ATTTTCCATCTTGTTTCGCT+TGG + chr4_3:13414684-13414703 Msa0630910:intron 35.0%
ATAAACCAAGCGAAACAAGA+TGG - chr4_3:13414692-13414711 None:intergenic 35.0%
ACATCAAATAGAGACACGAT+TGG - chr4_3:13414791-13414810 None:intergenic 35.0%
TTAAACTGAACCCAATCGAT+AGG + chr4_3:13414810-13414829 Msa0630910:intron 35.0%
! ACAAGAGATTCCTATCGATT+GGG - chr4_3:13414823-13414842 None:intergenic 35.0%
TACAAGAGATTCCTATCGAT+TGG - chr4_3:13414824-13414843 None:intergenic 35.0%
AGGATTCATCATAGTGAATC+AGG - chr4_3:13414880-13414899 None:intergenic 35.0%
GTGATTCGATTGAATGAATC+AGG - chr4_3:13414900-13414919 None:intergenic 35.0%
AATGACAAAAGAAAAGGGGT+TGG - chr4_3:13414970-13414989 None:intergenic 35.0%
! TCATTCGGTACAAAGTATCA+TGG - chr4_3:13415193-13415212 None:intergenic 35.0%
ACAATTGAGAGGTTCAACTT+AGG - chr4_3:13415463-13415482 None:intergenic 35.0%
TATGGAAGCAATCTTCAAAC+AGG + chr4_3:13415539-13415558 Msa0630910:CDS 35.0%
TTGTCGAATCAAAGCCTAAA+AGG + chr4_3:13415682-13415701 Msa0630910:CDS 35.0%
TGTCGAATCAAAGCCTAAAA+GGG + chr4_3:13415683-13415702 Msa0630910:CDS 35.0%
TCTGCTGTTCGAATTATATC+CGG + chr4_3:13415786-13415805 Msa0630910:intron 35.0%
TGCAAACCCTAAAAATGATC+CGG - chr4_3:13415808-13415827 None:intergenic 35.0%
TCAATGAATTCTAGTGAAGG+AGG - chr4_3:13415875-13415894 None:intergenic 35.0%
AACGTCACAAAGTGATATCA+TGG - chr4_3:13415965-13415984 None:intergenic 35.0%
! TGATTTAATGGGTCGATGAT+AGG + chr4_3:13416163-13416182 Msa0630910:intron 35.0%
ATTGACGAGTTCACTCAAAT+CGG + chr4_3:13416225-13416244 Msa0630910:intron 35.0%
TCATTTAACCGTCTTAATGC+AGG + chr4_3:13416431-13416450 Msa0630910:intron 35.0%
! ACCGTGCATTTTACCATATT+CGG + chr4_3:13416456-13416475 Msa0630910:CDS 35.0%
TCCGAATATGGTAAAATGCA+CGG - chr4_3:13416460-13416479 None:intergenic 35.0%
TGAAACATACCATCAGGAAA+AGG - chr4_3:13416553-13416572 None:intergenic 35.0%
ACTGAGCCTAAAATTTGTAG+GGG + chr4_3:13416726-13416745 Msa0630910:three_prime_UTR 35.0%
! TTCTTTTGCAGTGAGGAGTT+CGG - chr4_3:13412329-13412348 None:intergenic 40.0%
TCATGAAGTTAGGTCCTCAA+TGG + chr4_3:13412479-13412498 Msa0630910:CDS 40.0%
TGTTCGTGTTTCTCGTGTTA+AGG + chr4_3:13412507-13412526 Msa0630910:CDS 40.0%
GTTCGTGTTTCTCGTGTTAA+GGG + chr4_3:13412508-13412527 Msa0630910:CDS 40.0%
GTCGGAAGTTAAGTAAAGTC+TGG + chr4_3:13412756-13412775 Msa0630910:intron 40.0%
CTTTGGATTTATGTGGATGG+AGG + chr4_3:13412917-13412936 Msa0630910:intron 40.0%
TAAGTTGCCATGTCGCTAAT+TGG + chr4_3:13413112-13413131 Msa0630910:intron 40.0%
AAGTTGCCATGTCGCTAATT+GGG + chr4_3:13413113-13413132 Msa0630910:intron 40.0%
ATTACTCTTGATCCGTACTG+CGG - chr4_3:13413160-13413179 None:intergenic 40.0%
CAGGATTTCATCACAGAATC+CGG - chr4_3:13413247-13413266 None:intergenic 40.0%
!!! CTTCAATTTTAGAGCACGGA+TGG - chr4_3:13413358-13413377 None:intergenic 40.0%
! TCATTTTCCCTAGATGTTGC+AGG + chr4_3:13413627-13413646 Msa0630910:intron 40.0%
! CATTTTCCCTAGATGTTGCA+GGG + chr4_3:13413628-13413647 Msa0630910:intron 40.0%
CTATAACCCTGCAACATCTA+GGG - chr4_3:13413637-13413656 None:intergenic 40.0%
TCTATAACCCTGCAACATCT+AGG - chr4_3:13413638-13413657 None:intergenic 40.0%
! TATTGATCCGTGGTAGTGTT+TGG + chr4_3:13413832-13413851 Msa0630910:intron 40.0%
CCTAAAACCAAACACTACCA+CGG - chr4_3:13413842-13413861 None:intergenic 40.0%
! CTCTTTTTCTCATGGATAGC+TGG - chr4_3:13413873-13413892 None:intergenic 40.0%
AAAATCAAAGCCTCTGTTCC+CGG + chr4_3:13413917-13413936 Msa0630910:CDS 40.0%
! AAAGAGTATGATGGTGTTGG+TGG + chr4_3:13413990-13414009 Msa0630910:CDS 40.0%
!! AAGAGTATGATGGTGTTGGT+GGG + chr4_3:13413991-13414010 Msa0630910:CDS 40.0%
TGTCTGACTCTGACATGTAT+CGG + chr4_3:13414318-13414337 Msa0630910:intron 40.0%
GGCACCAACACTTAGATTAA+AGG - chr4_3:13414356-13414375 None:intergenic 40.0%
AGTGAATCAGGATTCGAGAT+GGG - chr4_3:13414868-13414887 None:intergenic 40.0%
TAGTGAATCAGGATTCGAGA+TGG - chr4_3:13414869-13414888 None:intergenic 40.0%
TGGCTGACTACACTAAGTTT+AGG - chr4_3:13414925-13414944 None:intergenic 40.0%
AGGTTCAACTTAGGCTTAAC+AGG - chr4_3:13415454-13415473 None:intergenic 40.0%
AGCAATCTTCAAACAGGCAA+AGG + chr4_3:13415545-13415564 Msa0630910:CDS 40.0%
AATCTTCAAACAGGCAAAGG+TGG + chr4_3:13415548-13415567 Msa0630910:CDS 40.0%
AAAAAGACTGTCGCAAACTC+TGG + chr4_3:13415618-13415637 Msa0630910:CDS 40.0%
AAAAGACTGTCGCAAACTCT+GGG + chr4_3:13415619-13415638 Msa0630910:CDS 40.0%
GTCGAATCAAAGCCTAAAAG+GGG + chr4_3:13415684-13415703 Msa0630910:CDS 40.0%
!!! GTTTTTCTAGAGCCCCTTTT+AGG - chr4_3:13415699-13415718 None:intergenic 40.0%
TGTGACTGTTAGTTGGTTAG+AGG - chr4_3:13415721-13415740 None:intergenic 40.0%
CTTCTTCTGTGACTGTTAGT+TGG - chr4_3:13415728-13415747 None:intergenic 40.0%
GCAGAACCTGTTACAAGTTT+AGG - chr4_3:13415771-13415790 None:intergenic 40.0%
!!! GGATCATTTTTAGGGTTTGC+AGG + chr4_3:13415807-13415826 Msa0630910:intron 40.0%
!!! AGCTCACCATTTTGGTTTTG+CGG - chr4_3:13415851-13415870 None:intergenic 40.0%
TCATTCACTCATGTGCAAAC+CGG - chr4_3:13416257-13416276 None:intergenic 40.0%
CTGATCGAGAACCAAACTTA+TGG - chr4_3:13416331-13416350 None:intergenic 40.0%
CAGTGTGATTAGACTTGGAA+AGG - chr4_3:13416364-13416383 None:intergenic 40.0%
TTGTGCAGTGTGATTAGACT+TGG - chr4_3:13416369-13416388 None:intergenic 40.0%
GAATATGGTAAAATGCACGG+TGG - chr4_3:13416457-13416476 None:intergenic 40.0%
! TAACGGCATTAGTTAGTCTC+TGG - chr4_3:13416522-13416541 None:intergenic 40.0%
AGAGACTAACTAATGCCGTT+AGG + chr4_3:13416521-13416540 Msa0630910:exon 40.0%
AGGAAAAGGAGAGAACCTAA+CGG - chr4_3:13416539-13416558 None:intergenic 40.0%
TCAGAGTGAAACATACCATC+AGG - chr4_3:13416559-13416578 None:intergenic 40.0%
AGTAAAACTTCGAAGAGTCG+CGG + chr4_3:13416580-13416599 Msa0630910:three_prime_UTR 40.0%
! AAATGGACTTCATCGACAAG+TGG - chr4_3:13416629-13416648 None:intergenic 40.0%
! TCTTTTGCAGTGAGGAGTTC+GGG - chr4_3:13412328-13412347 None:intergenic 45.0%
TGAAGTTAGGTCCTCAATGG+TGG + chr4_3:13412482-13412501 Msa0630910:CDS 45.0%
GAAGTTAGGTCCTCAATGGT+GGG + chr4_3:13412483-13412502 Msa0630910:CDS 45.0%
TAAGGGTCAGTATACTGCTG+AGG + chr4_3:13412525-13412544 Msa0630910:CDS 45.0%
TTCTTAACCATCCGGTTCTG+AGG + chr4_3:13412718-13412737 Msa0630910:intron 45.0%
! TCTTAACCATCCGGTTCTGA+GGG + chr4_3:13412719-13412738 Msa0630910:intron 45.0%
! AGGGGAATACCGTGTTTTGT+CGG + chr4_3:13412738-13412757 Msa0630910:intron 45.0%
TTTATGTGGATGGAGGGCTT+TGG + chr4_3:13412924-13412943 Msa0630910:intron 45.0%
!! TTGTTGGGTTGGGTATGAGT+AGG + chr4_3:13413069-13413088 Msa0630910:intron 45.0%
AGTTGCCATGTCGCTAATTG+GGG + chr4_3:13413114-13413133 Msa0630910:intron 45.0%
AACTCCAGACCAAACTGTGA+TGG + chr4_3:13413603-13413622 Msa0630910:intron 45.0%
TGAACCATCACAGTTTGGTC+TGG - chr4_3:13413610-13413629 None:intergenic 45.0%
!!! CCGTGGTAGTGTTTGGTTTT+AGG + chr4_3:13413839-13413858 Msa0630910:intron 45.0%
AAATCAAAGCCTCTGTTCCC+GGG + chr4_3:13413918-13413937 Msa0630910:CDS 45.0%
AAAATACAACCCGGGAACAG+AGG - chr4_3:13413930-13413949 None:intergenic 45.0%
!! GATGGTGTTGGTGGGTTTAT+TGG + chr4_3:13413999-13414018 Msa0630910:CDS 45.0%
!! TGGTGGGTTTATTGGATCCA+AGG + chr4_3:13414007-13414026 Msa0630910:CDS 45.0%
GGGTTTATTGGATCCAAGGT+TGG + chr4_3:13414011-13414030 Msa0630910:CDS 45.0%
TGCTTACGTGTTTCCAACCT+TGG - chr4_3:13414027-13414046 None:intergenic 45.0%
! TACATGTGTAAGTGTCGTGC+CGG + chr4_3:13414295-13414314 Msa0630910:intron 45.0%
TACATGTCAGAGTCAGACAC+CGG - chr4_3:13414317-13414336 None:intergenic 45.0%
!! AAGTGTTGGTGCCATATAGC+TGG + chr4_3:13414363-13414382 Msa0630910:intron 45.0%
TCCATATCATCCTCAGCTAC+TGG - chr4_3:13415525-13415544 None:intergenic 45.0%
GCTGAACCGCAAAACCAAAA+TGG + chr4_3:13415842-13415861 Msa0630910:intron 45.0%
! AAGGAGGAAGCTCACCATTT+TGG - chr4_3:13415859-13415878 None:intergenic 45.0%
ATCAAATAGACTGCTCCGAC+CGG + chr4_3:13416305-13416324 Msa0630910:intron 45.0%
TCGAGAACCAAACTTATGGC+CGG - chr4_3:13416327-13416346 None:intergenic 45.0%
TGGTTCTCGATCAGACTTGT+CGG + chr4_3:13416337-13416356 Msa0630910:intron 45.0%
! AGGTTCTCTCCTTTTCCTGA+TGG + chr4_3:13416541-13416560 Msa0630910:intron 45.0%
!! AAATAAAAAAAAAATGAATT+AGG + chr4_3:13412996-13413015 Msa0630910:intron 5.0%
GGATGCTAACGCTTCACCTA+TGG + chr4_3:13412215-13412234 Msa0630910:CDS 50.0%
! TTTTGCAGTGAGGAGTTCGG+GGG - chr4_3:13412326-13412345 None:intergenic 50.0%
! CTTTTGCAGTGAGGAGTTCG+GGG - chr4_3:13412327-13412346 None:intergenic 50.0%
! GTCTGCGTTCTTTTGCAGTG+AGG - chr4_3:13412336-13412355 None:intergenic 50.0%
GAGAGAGCAACGCAACAAAC+TGG + chr4_3:13412374-13412393 Msa0630910:CDS 50.0%
GAGCAACGCAACAAACTGGA+AGG + chr4_3:13412378-13412397 Msa0630910:CDS 50.0%
ACACGAACAACCCACCATTG+AGG - chr4_3:13412496-13412515 None:intergenic 50.0%
!! CTTAACCATCCGGTTCTGAG+GGG + chr4_3:13412720-13412739 Msa0630910:intron 50.0%
GTTGCCATGTCGCTAATTGG+GGG + chr4_3:13413115-13413134 Msa0630910:intron 50.0%
TAAACCAAGGCCAGTAGCTG+AGG + chr4_3:13415512-13415531 Msa0630910:CDS 50.0%
GCCAGTAGCTGAGGATGATA+TGG + chr4_3:13415521-13415540 Msa0630910:CDS 50.0%
!! TCACTCAAATCGGTTCGCAC+CGG + chr4_3:13416235-13416254 Msa0630910:intron 50.0%
GAACCAAACTTATGGCCGGT+CGG - chr4_3:13416323-13416342 None:intergenic 50.0%
!! AGCGTGGTGGTGGATTCCAT+AGG - chr4_3:13412234-13412253 None:intergenic 55.0%
GATTGAGAGAGGGGGTTTGG+TGG - chr4_3:13412275-13412294 None:intergenic 55.0%
GGAGATTGAGAGAGGGGGTT+TGG - chr4_3:13412278-13412297 None:intergenic 55.0%
!! AGGTGGCGGAGATTGAGAGA+GGG - chr4_3:13412285-13412304 None:intergenic 55.0%
! TGAGGCGCTTGCTCGTTCTT+TGG + chr4_3:13412543-13412562 Msa0630910:CDS 55.0%
GTATTCCCCTCAGAACCGGA+TGG - chr4_3:13412728-13412747 None:intergenic 55.0%
CACGGTATTCCCCTCAGAAC+CGG - chr4_3:13412732-13412751 None:intergenic 55.0%
! ATGTGGATGGAGGGCTTTGG+AGG + chr4_3:13412927-13412946 Msa0630910:intron 55.0%
CTCACCCCCAATTAGCGACA+TGG - chr4_3:13413122-13413141 None:intergenic 55.0%
!! ACGGATGGACTGACGCGTAA+AGG - chr4_3:13413343-13413362 None:intergenic 55.0%
! TCATCCTCAGCTACTGGCCT+TGG - chr4_3:13415519-13415538 None:intergenic 55.0%
CACGGTGGCCTGCATTAAGA+CGG - chr4_3:13416442-13416461 None:intergenic 55.0%
! AGAGAGGGGGTGTAGAAGCG+TGG - chr4_3:13412250-13412269 None:intergenic 60.0%
!! GGGTTTGGTGGAGAGAGAGG+GGG - chr4_3:13412263-13412282 None:intergenic 60.0%
!! GGGGTTTGGTGGAGAGAGAG+GGG - chr4_3:13412264-13412283 None:intergenic 60.0%
!! GGGGGTTTGGTGGAGAGAGA+GGG - chr4_3:13412265-13412284 None:intergenic 60.0%
!! AGGGGGTTTGGTGGAGAGAG+AGG - chr4_3:13412266-13412285 None:intergenic 60.0%
! GTGGCGGAGATTGAGAGAGG+GGG - chr4_3:13412283-13412302 None:intergenic 60.0%
!! GGTGGCGGAGATTGAGAGAG+GGG - chr4_3:13412284-13412303 None:intergenic 60.0%
!! GAGGTGGCGGAGATTGAGAG+AGG - chr4_3:13412286-13412305 None:intergenic 60.0%
!! ATGGAGGGCTTTGGAGGCAG+AGG + chr4_3:13412933-13412952 Msa0630910:intron 60.0%
!! TGGAGGGCTTTGGAGGCAGA+GGG + chr4_3:13412934-13412953 Msa0630910:intron 60.0%
TCGCTAATTGGGGGTGAGCG+AGG + chr4_3:13413124-13413143 Msa0630910:intron 60.0%
CGCTAATTGGGGGTGAGCGA+GGG + chr4_3:13413125-13413144 Msa0630910:intron 60.0%
GCTAATTGGGGGTGAGCGAG+GGG + chr4_3:13413126-13413145 Msa0630910:intron 60.0%
GCTCCGACCGGCCATAAGTT+TGG + chr4_3:13416317-13416336 Msa0630910:intron 60.0%
! GGGGTGTAGAAGCGTGGTGG+TGG - chr4_3:13412244-13412263 None:intergenic 65.0%
! GAGGGGGTGTAGAAGCGTGG+TGG - chr4_3:13412247-13412266 None:intergenic 65.0%
AGTGAGGAGTTCGGGGGAGG+AGG - chr4_3:13412320-13412339 None:intergenic 65.0%
TGCAGTGAGGAGTTCGGGGG+AGG - chr4_3:13412323-13412342 None:intergenic 65.0%
! GGGGCGAAGTGTCCGCAGTA+CGG + chr4_3:13413145-13413164 Msa0630910:intron 65.0%
!! GGTGGAGGTGACGGAGGTGG+CGG - chr4_3:13412299-13412318 None:intergenic 70.0%
!! GGAGGTGGAGGTGACGGAGG+TGG - chr4_3:13412302-13412321 None:intergenic 70.0%
! GGAGGAGGTGGAGGTGACGG+AGG - chr4_3:13412305-13412324 None:intergenic 70.0%
GGGGGAGGAGGTGGAGGTGA+CGG - chr4_3:13412308-13412327 None:intergenic 70.0%
GAGTTCGGGGGAGGAGGTGG+AGG - chr4_3:13412314-13412333 None:intergenic 70.0%
GAGGAGTTCGGGGGAGGAGG+TGG - chr4_3:13412317-13412336 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 13412121 13416825 13412121 ID=Msa0630910;Name=Msa0630910
chr4_3 mRNA 13412121 13416825 13412121 ID=Msa0630910-mRNA-1;Parent=Msa0630910;Name=Msa0630910-mRNA-1;_AED=0.11;_eAED=0.11;_QI=87|0.75|0.8|1|0.5|0.4|5|272|308
chr4_3 exon 13412121 13412594 13412121 ID=Msa0630910-mRNA-1:exon:3780;Parent=Msa0630910-mRNA-1
chr4_3 exon 13413861 13414039 13413861 ID=Msa0630910-mRNA-1:exon:3781;Parent=Msa0630910-mRNA-1
chr4_3 exon 13415497 13415776 13415497 ID=Msa0630910-mRNA-1:exon:3782;Parent=Msa0630910-mRNA-1
chr4_3 exon 13416453 13416558 13416453 ID=Msa0630910-mRNA-1:exon:3783;Parent=Msa0630910-mRNA-1
chr4_3 exon 13416579 13416825 13416579 ID=Msa0630910-mRNA-1:exon:3784;Parent=Msa0630910-mRNA-1
chr4_3 five_prime_UTR 13412121 13412207 13412121 ID=Msa0630910-mRNA-1:five_prime_utr;Parent=Msa0630910-mRNA-1
chr4_3 CDS 13412208 13412594 13412208 ID=Msa0630910-mRNA-1:cds;Parent=Msa0630910-mRNA-1
chr4_3 CDS 13413861 13414039 13413861 ID=Msa0630910-mRNA-1:cds;Parent=Msa0630910-mRNA-1
chr4_3 CDS 13415497 13415776 13415497 ID=Msa0630910-mRNA-1:cds;Parent=Msa0630910-mRNA-1
chr4_3 CDS 13416453 13416533 13416453 ID=Msa0630910-mRNA-1:cds;Parent=Msa0630910-mRNA-1
chr4_3 three_prime_UTR 13416534 13416558 13416534 ID=Msa0630910-mRNA-1:three_prime_utr;Parent=Msa0630910-mRNA-1
chr4_3 three_prime_UTR 13416579 13416825 13416579 ID=Msa0630910-mRNA-1:three_prime_utr;Parent=Msa0630910-mRNA-1
Gene Sequence

>Msa0630910

ATGAAAGGGATGCTAACGCTTCACCTATGGAATCCACCACCACGCTTCTACACCCCCTCTCTCTCCACCAAACCCCCTCTCTCAATCTCCGCCACCTCCGTCACCTCCACCTCCTCCCCCGAACTCCTCACTGCAAAAGAACGCAGACGCTTACGCAACGAGCGAAGAGAGAGCAACGCAACAAACTGGAAGGAAGAAGTTGAAAATAAACTCATTCAGAAAACCAAAAAAGAGAATAAATCATGGATGGATGAACTCAACCTTGATAATCTCATGAAGTTAGGTCCTCAATGGTGGGTTGTTCGTGTTTCTCGTGTTAAGGGTCAGTATACTGCTGAGGCGCTTGCTCGTTCTTTGGCTAAGTTTTTTCCTGATATCGACTTTAAGGTATATGCTCCAGCTATCCATGAGAAAAAGAGATTGAAGAGTGGTTCCATCTCTGTAAAATCAAAGCCTCTGTTCCCGGGTTGTATTTTTCTGAGATGCGAACTGAACAAACCATTACATGACTACATAAAAGAGTATGATGGTGTTGGTGGGTTTATTGGATCCAAGGTTGGAAACACAAAAAGGCAGATTAATAAACCAAGGCCAGTAGCTGAGGATGATATGGAAGCAATCTTCAAACAGGCAAAGGTGGAGCAAGAAAATGCTGACAAAGCATTTGAAGAAGAAGAAGAAGAAGAGAAAAAGACTGTCGCAAACTCTGGGAATCCCAATAAAGAGTTAGAATTGGATGTTTCGAAAGCTATTGTCGAATCAAAGCCTAAAAGGGGCTCTAGAAAAACCTCTAACCAACTAACAGTCACAGAAGAAGCTTCATCAGCTAAAAAAAAACCTAAACTTGCCACCGTGCATTTTACCATATTCGGAAAAGAGAACATAGTAGACCTAGATGTTAGTGAAATTGTTCCAGAGACTAACTAA

Protein sequence

>Msa0630910

MKGMLTLHLWNPPPRFYTPSLSTKPPLSISATSVTSTSSPELLTAKERRRLRNERRESNATNWKEEVENKLIQKTKKENKSWMDELNLDNLMKLGPQWWVVRVSRVKGQYTAEALARSLAKFFPDIDFKVYAPAIHEKKRLKSGSISVKSKPLFPGCIFLRCELNKPLHDYIKEYDGVGGFIGSKVGNTKRQINKPRPVAEDDMEAIFKQAKVEQENADKAFEEEEEEEKKTVANSGNPNKELELDVSKAIVESKPKRGSRKTSNQLTVTEEASSAKKKPKLATVHFTIFGKENIVDLDVSEIVPETN*