AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0490740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0490740 MtrunA17_Chr3g0081651 84.758 269 23 2 1 251 1 269 5.61e-150 419
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0490740 AT5G07020.1 64.000 200 59 4 27 213 26 225 3.07e-80 241

Find 82 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAACTAACTTCCTTATC+AGG 0.183830 3_4:-12400348 None:intergenic
AGATTCCAATTATAGGATTT+TGG 0.200860 3_4:-12400080 None:intergenic
TGATGGAGAAAGAAGGTTTA+TGG 0.216940 3_4:-12400048 None:intergenic
CATTCATTTGTTATCAATAA+TGG 0.226592 3_4:+12400173 Msa0490740:exon
TTGACATAATATTTCAAATA+TGG 0.228269 3_4:-12402673 None:intergenic
AAATATAAACACACTTAATT+TGG 0.234280 3_4:-12402570 None:intergenic
CCAAACCAAAATCCTATAAT+TGG 0.249655 3_4:+12400075 Msa0490740:five_prime_UTR
GCTTATGTATACAAGGTTAA+TGG 0.352128 3_4:+12402529 Msa0490740:three_prime_UTR
GGCACATGTGTTGGTTGTTA+TGG 0.357906 3_4:-12400214 None:intergenic
CAGCCGGTTGAATTGTGAAT+TGG 0.366130 3_4:+12402748 Msa0490740:three_prime_UTR
GTAGGTTGGGAAGGTGAGTA+TGG 0.374281 3_4:+12401078 Msa0490740:intron
TGTGTCTGTGTGTGTTAAGA+TGG 0.376898 3_4:-12400021 None:intergenic
ACATTACAACATGTTTGAAC+TGG 0.409715 3_4:+12402800 Msa0490740:three_prime_UTR
GATTAAACCAACTGACGAAC+GGG 0.425048 3_4:-12402771 None:intergenic
TGTACCAGTCTCGGTGCTCT+CGG 0.435750 3_4:-12402334 None:intergenic
TTGAAGAGACTTTGTTGAGT+GGG 0.455418 3_4:-12399981 None:intergenic
GCAGAAAGTGCTATAAGTTC+AGG 0.456072 3_4:+12402024 Msa0490740:CDS
GCTATAAGTTCAGGAACATC+TGG 0.456974 3_4:+12402033 Msa0490740:CDS
TCTGTCTCAGCTGTCACGGC+AGG 0.459874 3_4:-12402249 None:intergenic
GTGTTAAGATGGGTGGTTTG+TGG 0.462153 3_4:-12400010 None:intergenic
CAGAACACAGCAGCAATTGC+TGG 0.464297 3_4:+12402075 Msa0490740:CDS
AGTACTGTCTCAGTGCTCTC+AGG 0.470135 3_4:-12402294 None:intergenic
GGAAGAATGTGCCCCTGATA+AGG 0.476565 3_4:+12400335 Msa0490740:CDS
TGGTAAGAATTCTCCTCCTC+AGG 0.480874 3_4:+12402149 Msa0490740:CDS
TGAACTTGAGGAACTTCTGC+AGG 0.483064 3_4:-12402384 None:intergenic
GAATTGGCCCGTTCGTCAGT+TGG 0.484828 3_4:+12402764 Msa0490740:three_prime_UTR
CGTCGTAAGCAGGGTTGGAC+AGG 0.487965 3_4:+12401148 Msa0490740:CDS
GTACCAGTCTCGGTGCTCTC+GGG 0.489708 3_4:-12402333 None:intergenic
ATATCCACCACGTCGTAAGC+AGG 0.491350 3_4:+12401138 Msa0490740:CDS
GGGCCAATTCACAATTCAAC+CGG 0.493650 3_4:-12402751 None:intergenic
GAAGAGAAGACAAAAGTAGT+AGG 0.497786 3_4:+12401112 Msa0490740:CDS
ATGTCCACACTTGAGGTCTC+TGG 0.499257 3_4:-12402426 None:intergenic
GGCATCATCAATACTTCTAC+AGG 0.502782 3_4:+12402125 Msa0490740:CDS
GTGTCTGTGTGTGTTAAGAT+GGG 0.506507 3_4:-12400020 None:intergenic
TTGGACAGGCTATGTTGAAA+AGG 0.509725 3_4:+12401162 Msa0490740:CDS
GGATTAAACCAACTGACGAA+CGG 0.511165 3_4:-12402772 None:intergenic
TTTCCAGCCAGCAGTTTATG+TGG 0.517990 3_4:+12402002 Msa0490740:intron
ACATCTGGTTCTTCTTCTGA+TGG 0.519250 3_4:+12402048 Msa0490740:CDS
AACCGGCTGAACTGCCTACT+CGG 0.519635 3_4:-12402734 None:intergenic
TATTATGTCAAGGATTTCAA+AGG 0.521688 3_4:+12402685 Msa0490740:three_prime_UTR
TAAAGCAATGTCTCAAAAGC+CGG 0.525375 3_4:+12402710 Msa0490740:three_prime_UTR
TGAAGAGACTTTGTTGAGTG+GGG 0.525742 3_4:-12399980 None:intergenic
TTCTGAGTCTGATTGTAATG+AGG 0.526364 3_4:+12400314 Msa0490740:CDS
CAAACATGTTGTAATGTGAC+TGG 0.529119 3_4:-12402794 None:intergenic
CAACCCGAGAGCACCGAGAC+TGG 0.533570 3_4:+12402330 Msa0490740:CDS
TGAGATTCAACTTGAACTTG+AGG 0.536784 3_4:-12402396 None:intergenic
ATATCATTGAACACAACTAA+AGG 0.539396 3_4:+12402612 Msa0490740:three_prime_UTR
GCTGAACTGCCTACTCGGTC+CGG 0.544520 3_4:-12402729 None:intergenic
GTAGTAACTAAGTGATGGCC+CGG 0.545619 3_4:-12402190 None:intergenic
CACCACGTCGTAAGCAGGGT+TGG 0.545868 3_4:+12401143 Msa0490740:CDS
ATGAACTAACTTCCTTATCA+GGG 0.546204 3_4:-12400347 None:intergenic
CTTTCTGCCACATAAACTGC+TGG 0.548485 3_4:-12402009 None:intergenic
TCTGTGTGTGTTAAGATGGG+TGG 0.574031 3_4:-12400017 None:intergenic
GACCGAGTAGGCAGTTCAGC+CGG 0.575661 3_4:+12402732 Msa0490740:three_prime_UTR
ATATTTGAAATATTATGTCA+AGG 0.576341 3_4:+12402675 Msa0490740:three_prime_UTR
TATGTTGAAAAGGATACTGC+TGG 0.576621 3_4:+12401172 Msa0490740:CDS
AGATAATGATGTACCAGTCT+CGG 0.577168 3_4:-12402343 None:intergenic
TGTTGAAAAGGCACATGTGT+TGG 0.578537 3_4:-12400223 None:intergenic
GGAAAGCCTAAAATTGTCCA+CGG 0.582502 3_4:+12399910 Msa0490740:five_prime_UTR
GACGGTGATGTAGGTTGGGA+AGG 0.584632 3_4:+12401069 Msa0490740:intron
AGATACAATGTCCACACTTG+AGG 0.586084 3_4:-12402433 None:intergenic
GTTTCATTATACCACTTGTG+TGG 0.588488 3_4:+12399932 Msa0490740:five_prime_UTR
ATGTATACAAGGTTAATGGA+TGG 0.589265 3_4:+12402533 Msa0490740:three_prime_UTR
TTTGAAGAGACTTTGTTGAG+TGG 0.591897 3_4:-12399982 None:intergenic
TCATCAATACTTCTACAGGT+TGG 0.599103 3_4:+12402129 Msa0490740:CDS
TCTCAAAAGCCGGACCGAGT+AGG 0.600234 3_4:+12402720 Msa0490740:three_prime_UTR
AATATGAGCTTATGTATACA+AGG 0.601253 3_4:+12402522 Msa0490740:three_prime_UTR
TAGCTCTGTCTCAGCTGTCA+CGG 0.612190 3_4:-12402253 None:intergenic
GACAAATATATATTCAGTCG+AGG 0.616952 3_4:+12401198 Msa0490740:CDS
TTGTTTCTAGACCACACAAG+TGG 0.617077 3_4:-12399943 None:intergenic
TTGGGAAGGTGAGTATGGAA+TGG 0.617296 3_4:+12401083 Msa0490740:CDS
TTGATGTAGTAACTAAGTGA+TGG 0.619070 3_4:-12402195 None:intergenic
GTCCAACCCTGCTTACGACG+TGG 0.625515 3_4:-12401145 None:intergenic
TATCCACCACGTCGTAAGCA+GGG 0.636876 3_4:+12401139 Msa0490740:CDS
AAACATGTTGTAATGTGACT+GGG 0.647666 3_4:-12402793 None:intergenic
TGCACTGATCTCAATTGCCG+CGG 0.650728 3_4:+12402104 Msa0490740:CDS
TCAGCCAGAGACCTCAAGTG+TGG 0.655701 3_4:+12402422 Msa0490740:CDS
CAACCCTGCTTACGACGTGG+TGG 0.656386 3_4:-12401142 None:intergenic
TAGAAGTATTGATGATGCCG+CGG 0.657463 3_4:-12402121 None:intergenic
AACACAGCAGCAATTGCTGG+TGG 0.671200 3_4:+12402078 Msa0490740:CDS
TGAACTAACTTCCTTATCAG+GGG 0.680079 3_4:-12400346 None:intergenic
CAAGTGGTATAATGAAACCG+TGG 0.745560 3_4:-12399927 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGCAATTAATTAAAAAAAA+TGG - chr3_4:12400385-12400404 None:intergenic 10.0%
!! AGTTTAAAAATTACTTAATT+AGG + chr3_4:12400873-12400892 Msa0490740:intron 10.0%
!!! TAGAATTTTTTCTATTATTA+AGG + chr3_4:12401222-12401241 Msa0490740:intron 10.0%
!!! TAAAACAATATGTTTTACTT+TGG - chr3_4:12400499-12400518 None:intergenic 15.0%
!!! TCAATTTGAATATTGTTTTT+TGG + chr3_4:12400633-12400652 Msa0490740:intron 15.0%
!!! AATGTTTATATAGTCTTAAA+AGG + chr3_4:12400905-12400924 Msa0490740:intron 15.0%
!! AAATATAAACACACTTAATT+TGG - chr3_4:12402573-12402592 None:intergenic 15.0%
!! TTGACATAATATTTCAAATA+TGG - chr3_4:12402676-12402695 None:intergenic 15.0%
!!! ATATTTGAAATATTATGTCA+AGG + chr3_4:12402675-12402694 Msa0490740:three_prime_UTR 15.0%
!! AAGAAAAAGATTCCAATTAT+AGG - chr3_4:12400090-12400109 None:intergenic 20.0%
!!! CATTCATTTGTTATCAATAA+TGG + chr3_4:12400173-12400192 Msa0490740:exon 20.0%
!!! TTTTACTTTGTATGTTTGTT+TGG + chr3_4:12400421-12400440 Msa0490740:intron 20.0%
!! TTTCCTTAATATCATTGAAT+AGG - chr3_4:12400946-12400965 None:intergenic 20.0%
!! AGTATAAATAGATGAACAAA+AGG + chr3_4:12401024-12401043 Msa0490740:intron 20.0%
!!! AATTTTACAGTATTTAGTTG+AGG + chr3_4:12401415-12401434 Msa0490740:intron 20.0%
!! GTAATGTAATACAAAAATCA+CGG + chr3_4:12401589-12401608 Msa0490740:intron 20.0%
!! AGATTCCAATTATAGGATTT+TGG - chr3_4:12400083-12400102 None:intergenic 25.0%
!! TTTGGTAGTTGAGAAAATTA+AGG + chr3_4:12400439-12400458 Msa0490740:intron 25.0%
! TGAGAAAATTAAGGAAAACT+AGG + chr3_4:12400448-12400467 Msa0490740:intron 25.0%
! CCTGTAATCAAATCATATAA+AGG - chr3_4:12400613-12400632 None:intergenic 25.0%
! CCTTTATATGATTTGATTAC+AGG + chr3_4:12400610-12400629 Msa0490740:intron 25.0%
!! TCACAATATAAAGGATTTTG+AGG - chr3_4:12400789-12400808 None:intergenic 25.0%
!! TATAGTCTTAAAAGGATAGT+TGG + chr3_4:12400913-12400932 Msa0490740:intron 25.0%
! AGACCTATTCAATGATATTA+AGG + chr3_4:12400940-12400959 Msa0490740:intron 25.0%
! CATACATACATAAAGATCAA+AGG - chr3_4:12401282-12401301 None:intergenic 25.0%
! AGTATTTAGTTGAGGAAAAA+TGG + chr3_4:12401423-12401442 Msa0490740:intron 25.0%
! TACATGTGATATTTAATGCA+AGG - chr3_4:12401572-12401591 None:intergenic 25.0%
! TTAAATAAGTCAATCCAAAC+AGG + chr3_4:12401854-12401873 Msa0490740:intron 25.0%
! AATATGAGCTTATGTATACA+AGG + chr3_4:12402522-12402541 Msa0490740:three_prime_UTR 25.0%
!! AGTGTGTTTATATTTTGCTA+AGG + chr3_4:12402578-12402597 Msa0490740:three_prime_UTR 25.0%
! ATATCATTGAACACAACTAA+AGG + chr3_4:12402612-12402631 Msa0490740:three_prime_UTR 25.0%
! TATTATGTCAAGGATTTCAA+AGG + chr3_4:12402685-12402704 Msa0490740:three_prime_UTR 25.0%
!!! GATTTTGGTTTGGTTTTTGA+TGG - chr3_4:12400068-12400087 None:intergenic 30.0%
!!! CCAATTATAGGATTTTGGTT+TGG - chr3_4:12400078-12400097 None:intergenic 30.0%
CCAAACCAAAATCCTATAAT+TGG + chr3_4:12400075-12400094 Msa0490740:five_prime_UTR 30.0%
! GGAGAATTTTCTTGTTGAAA+AGG - chr3_4:12400238-12400257 None:intergenic 30.0%
!! GTTAATCTTTTGTTGCTTCA+AGG - chr3_4:12400259-12400278 None:intergenic 30.0%
ATGAACTAACTTCCTTATCA+GGG - chr3_4:12400350-12400369 None:intergenic 30.0%
AATGAACTAACTTCCTTATC+AGG - chr3_4:12400351-12400370 None:intergenic 30.0%
! AAAAGCGTGCTTGTTTATAT+TGG + chr3_4:12400580-12400599 Msa0490740:intron 30.0%
!!! GTGCTTGTTTATATTGGTTT+TGG + chr3_4:12400586-12400605 Msa0490740:intron 30.0%
!!! TTTTTCATATAGCTCTAGCA+TGG + chr3_4:12400669-12400688 Msa0490740:intron 30.0%
!!! TCTAGCATGGTTTTAAATTG+TGG + chr3_4:12400682-12400701 Msa0490740:intron 30.0%
!!! ATGGTTTTAAATTGTGGTTG+CGG + chr3_4:12400688-12400707 Msa0490740:intron 30.0%
TGAAAACACAGTCAAAATTG+TGG + chr3_4:12400738-12400757 Msa0490740:intron 30.0%
CATATGCAGTCACAATATAA+AGG - chr3_4:12400798-12400817 None:intergenic 30.0%
AGAAGCTAATCCTTTATTGA+CGG + chr3_4:12401051-12401070 Msa0490740:intron 30.0%
GACAAATATATATTCAGTCG+AGG + chr3_4:12401198-12401217 Msa0490740:CDS 30.0%
ACATGCTCAACAAAATCAAA+GGG - chr3_4:12401316-12401335 None:intergenic 30.0%
TACATGCTCAACAAAATCAA+AGG - chr3_4:12401317-12401336 None:intergenic 30.0%
ATTTAGTTGAGGAAAAATGG+AGG + chr3_4:12401426-12401445 Msa0490740:intron 30.0%
TTTAGTTGAGGAAAAATGGA+GGG + chr3_4:12401427-12401446 Msa0490740:intron 30.0%
ATAGGAGCAAATATTGAATC+AGG - chr3_4:12401479-12401498 None:intergenic 30.0%
GTAATACAAAAATCACGGTT+TGG + chr3_4:12401594-12401613 Msa0490740:intron 30.0%
! TTATTTTCATAAGCTCTCCA+AGG - chr3_4:12401761-12401780 None:intergenic 30.0%
AAATGATGCCTTAAGAATCT+AGG + chr3_4:12401925-12401944 Msa0490740:intron 30.0%
TTTAAGGACCTAGATTCTTA+AGG - chr3_4:12401936-12401955 None:intergenic 30.0%
! CTAGGTCCTTAAATTTTCTA+TGG + chr3_4:12401943-12401962 Msa0490740:intron 30.0%
TTGATGTAGTAACTAAGTGA+TGG - chr3_4:12402198-12402217 None:intergenic 30.0%
!! CCATGCTTTTAAAGAAAAAG+TGG - chr3_4:12402478-12402497 None:intergenic 30.0%
!!! CCACTTTTTCTTTAAAAGCA+TGG + chr3_4:12402475-12402494 Msa0490740:three_prime_UTR 30.0%
GCTTATGTATACAAGGTTAA+TGG + chr3_4:12402529-12402548 Msa0490740:three_prime_UTR 30.0%
ATGTATACAAGGTTAATGGA+TGG + chr3_4:12402533-12402552 Msa0490740:three_prime_UTR 30.0%
AAACATGTTGTAATGTGACT+GGG - chr3_4:12402796-12402815 None:intergenic 30.0%
ACATTACAACATGTTTGAAC+TGG + chr3_4:12402800-12402819 Msa0490740:three_prime_UTR 30.0%
! ATGAAACCGTGGACAATTTT+AGG - chr3_4:12399919-12399938 None:intergenic 35.0%
GTTTCATTATACCACTTGTG+TGG + chr3_4:12399932-12399951 Msa0490740:five_prime_UTR 35.0%
TTGAAGAGACTTTGTTGAGT+GGG - chr3_4:12399984-12400003 None:intergenic 35.0%
TTTGAAGAGACTTTGTTGAG+TGG - chr3_4:12399985-12400004 None:intergenic 35.0%
TGATGGAGAAAGAAGGTTTA+TGG - chr3_4:12400051-12400070 None:intergenic 35.0%
! TGGTTTTTGATGGAGAAAGA+AGG - chr3_4:12400058-12400077 None:intergenic 35.0%
TTCTGAGTCTGATTGTAATG+AGG + chr3_4:12400314-12400333 Msa0490740:CDS 35.0%
TGAACTAACTTCCTTATCAG+GGG - chr3_4:12400349-12400368 None:intergenic 35.0%
!! GTAGAATGTTCGTTTGTTGT+CGG + chr3_4:12400969-12400988 Msa0490740:intron 35.0%
GAAGAGAAGACAAAAGTAGT+AGG + chr3_4:12401112-12401131 Msa0490740:CDS 35.0%
TATGTTGAAAAGGATACTGC+TGG + chr3_4:12401172-12401191 Msa0490740:CDS 35.0%
ATATTTGCTCCTATCGAATG+TGG + chr3_4:12401485-12401504 Msa0490740:intron 35.0%
TATTTGCTCCTATCGAATGT+GGG + chr3_4:12401486-12401505 Msa0490740:intron 35.0%
!!! GTTGTTTTTGTAAGCTCTCT+TGG + chr3_4:12401734-12401753 Msa0490740:intron 35.0%
AGTATAACCACTTGTGAAAC+TGG - chr3_4:12401823-12401842 None:intergenic 35.0%
CGAACGCCATAGAAAATTTA+AGG - chr3_4:12401952-12401971 None:intergenic 35.0%
TCATCAATACTTCTACAGGT+TGG + chr3_4:12402129-12402148 Msa0490740:CDS 35.0%
AGATAATGATGTACCAGTCT+CGG - chr3_4:12402346-12402365 None:intergenic 35.0%
TGAGATTCAACTTGAACTTG+AGG - chr3_4:12402399-12402418 None:intergenic 35.0%
TAAAGCAATGTCTCAAAAGC+CGG + chr3_4:12402710-12402729 Msa0490740:three_prime_UTR 35.0%
CAAACATGTTGTAATGTGAC+TGG - chr3_4:12402797-12402816 None:intergenic 35.0%
GGAAAGCCTAAAATTGTCCA+CGG + chr3_4:12399910-12399929 Msa0490740:five_prime_UTR 40.0%
CAAGTGGTATAATGAAACCG+TGG - chr3_4:12399930-12399949 None:intergenic 40.0%
!! TTGTTTCTAGACCACACAAG+TGG - chr3_4:12399946-12399965 None:intergenic 40.0%
TGAAGAGACTTTGTTGAGTG+GGG - chr3_4:12399983-12400002 None:intergenic 40.0%
GTGTCTGTGTGTGTTAAGAT+GGG - chr3_4:12400023-12400042 None:intergenic 40.0%
TGTGTCTGTGTGTGTTAAGA+TGG - chr3_4:12400024-12400043 None:intergenic 40.0%
! TGTTGAAAAGGCACATGTGT+TGG - chr3_4:12400226-12400245 None:intergenic 40.0%
TGCAATTGCAATGTTGTTGC+AGG + chr3_4:12400762-12400781 Msa0490740:intron 40.0%
TGTGACTGCATATGCAATTG+CGG + chr3_4:12400804-12400823 Msa0490740:intron 40.0%
CGGACTGCAATTTATAACCA+TGG + chr3_4:12400824-12400843 Msa0490740:intron 40.0%
ACTACTACTTCTACAGTCCA+TGG - chr3_4:12400844-12400863 None:intergenic 40.0%
TCCTTTATTGACGGTGATGT+AGG + chr3_4:12401060-12401079 Msa0490740:intron 40.0%
ACCTACATCACCGTCAATAA+AGG - chr3_4:12401064-12401083 None:intergenic 40.0%
TTATTGACGGTGATGTAGGT+TGG + chr3_4:12401064-12401083 Msa0490740:intron 40.0%
TATTGACGGTGATGTAGGTT+GGG + chr3_4:12401065-12401084 Msa0490740:intron 40.0%
TTGGACAGGCTATGTTGAAA+AGG + chr3_4:12401162-12401181 Msa0490740:CDS 40.0%
ATTTGCTCCTATCGAATGTG+GGG + chr3_4:12401487-12401506 Msa0490740:intron 40.0%
AAATCTTCCCCACATTCGAT+AGG - chr3_4:12401497-12401516 None:intergenic 40.0%
!! GCAGAAAGTGCTATAAGTTC+AGG + chr3_4:12402024-12402043 Msa0490740:CDS 40.0%
GCTATAAGTTCAGGAACATC+TGG + chr3_4:12402033-12402052 Msa0490740:CDS 40.0%
!! ACATCTGGTTCTTCTTCTGA+TGG + chr3_4:12402048-12402067 Msa0490740:CDS 40.0%
!! TAGAAGTATTGATGATGCCG+CGG - chr3_4:12402124-12402143 None:intergenic 40.0%
GGCATCATCAATACTTCTAC+AGG + chr3_4:12402125-12402144 Msa0490740:CDS 40.0%
! TATTCGACTTTTTGGACCTG+AGG - chr3_4:12402168-12402187 None:intergenic 40.0%
GTCCAAAAAGTCGAATACTC+CGG + chr3_4:12402171-12402190 Msa0490740:CDS 40.0%
TCCAAAAAGTCGAATACTCC+GGG + chr3_4:12402172-12402191 Msa0490740:CDS 40.0%
AGATACAATGTCCACACTTG+AGG - chr3_4:12402436-12402455 None:intergenic 40.0%
GATTAAACCAACTGACGAAC+GGG - chr3_4:12402774-12402793 None:intergenic 40.0%
GGATTAAACCAACTGACGAA+CGG - chr3_4:12402775-12402794 None:intergenic 40.0%
GTGTTAAGATGGGTGGTTTG+TGG - chr3_4:12400013-12400032 None:intergenic 45.0%
TCTGTGTGTGTTAAGATGGG+TGG - chr3_4:12400020-12400039 None:intergenic 45.0%
!! GGCACATGTGTTGGTTGTTA+TGG - chr3_4:12400217-12400236 None:intergenic 45.0%
TTGGGAAGGTGAGTATGGAA+TGG + chr3_4:12401083-12401102 Msa0490740:CDS 45.0%
AGTTGAGGAAAAATGGAGGG+AGG + chr3_4:12401430-12401449 Msa0490740:intron 45.0%
GTTGAGGAAAAATGGAGGGA+GGG + chr3_4:12401431-12401450 Msa0490740:intron 45.0%
TTGAGGAAAAATGGAGGGAG+GGG + chr3_4:12401432-12401451 Msa0490740:intron 45.0%
GAATGTGGGGAAGATTTGCA+TGG + chr3_4:12401500-12401519 Msa0490740:intron 45.0%
TTGTAAGCTCTCTTGGTCCT+TGG + chr3_4:12401741-12401760 Msa0490740:intron 45.0%
CTCTCAACCAGTTTCACAAG+TGG + chr3_4:12401813-12401832 Msa0490740:intron 45.0%
AGCATGACTTTGTGCCTGTT+TGG - chr3_4:12401871-12401890 None:intergenic 45.0%
! CATAAACTGCTGGCTGGAAA+AGG - chr3_4:12402002-12402021 None:intergenic 45.0%
TTTCCAGCCAGCAGTTTATG+TGG + chr3_4:12402002-12402021 Msa0490740:intron 45.0%
CTTTCTGCCACATAAACTGC+TGG - chr3_4:12402012-12402031 None:intergenic 45.0%
TGGTAAGAATTCTCCTCCTC+AGG + chr3_4:12402149-12402168 Msa0490740:CDS 45.0%
GTAGTAACTAAGTGATGGCC+CGG - chr3_4:12402193-12402212 None:intergenic 45.0%
! ACTTCTGCAGGAGAGTTTTC+AGG - chr3_4:12402375-12402394 None:intergenic 45.0%
TGAACTTGAGGAACTTCTGC+AGG - chr3_4:12402387-12402406 None:intergenic 45.0%
CAGCCGGTTGAATTGTGAAT+TGG + chr3_4:12402748-12402767 Msa0490740:three_prime_UTR 45.0%
GGGCCAATTCACAATTCAAC+CGG - chr3_4:12402754-12402773 None:intergenic 45.0%
GGAAGAATGTGCCCCTGATA+AGG + chr3_4:12400335-12400354 Msa0490740:CDS 50.0%
! GTAGGTTGGGAAGGTGAGTA+TGG + chr3_4:12401078-12401097 Msa0490740:intron 50.0%
ATATCCACCACGTCGTAAGC+AGG + chr3_4:12401138-12401157 Msa0490740:CDS 50.0%
TATCCACCACGTCGTAAGCA+GGG + chr3_4:12401139-12401158 Msa0490740:CDS 50.0%
TGTGGGGAAGATTTGCATGG+TGG + chr3_4:12401503-12401522 Msa0490740:intron 50.0%
CAGAACACAGCAGCAATTGC+TGG + chr3_4:12402075-12402094 Msa0490740:CDS 50.0%
AACACAGCAGCAATTGCTGG+TGG + chr3_4:12402078-12402097 Msa0490740:CDS 50.0%
! TGCACTGATCTCAATTGCCG+CGG + chr3_4:12402104-12402123 Msa0490740:CDS 50.0%
! TCGACTTTTTGGACCTGAGG+AGG - chr3_4:12402165-12402184 None:intergenic 50.0%
!! GCCCGGAGTATTCGACTTTT+TGG - chr3_4:12402176-12402195 None:intergenic 50.0%
! TAGCTCTGTCTCAGCTGTCA+CGG - chr3_4:12402256-12402275 None:intergenic 50.0%
AGTACTGTCTCAGTGCTCTC+AGG - chr3_4:12402297-12402316 None:intergenic 50.0%
ATGTCCACACTTGAGGTCTC+TGG - chr3_4:12402429-12402448 None:intergenic 50.0%
! GACGGTGATGTAGGTTGGGA+AGG + chr3_4:12401069-12401088 Msa0490740:intron 55.0%
AAATGGAGGGAGGGGACTCA+TGG + chr3_4:12401440-12401459 Msa0490740:intron 55.0%
GGGGAAGATTTGCATGGTGG+AGG + chr3_4:12401506-12401525 Msa0490740:intron 55.0%
CTGCCACATAAACTGCTGGC+TGG - chr3_4:12402008-12402027 None:intergenic 55.0%
!! TGTACCAGTCTCGGTGCTCT+CGG - chr3_4:12402337-12402356 None:intergenic 55.0%
TCAGCCAGAGACCTCAAGTG+TGG + chr3_4:12402422-12402441 Msa0490740:CDS 55.0%
TCTCAAAAGCCGGACCGAGT+AGG + chr3_4:12402720-12402739 Msa0490740:three_prime_UTR 55.0%
AACCGGCTGAACTGCCTACT+CGG - chr3_4:12402737-12402756 None:intergenic 55.0%
GAATTGGCCCGTTCGTCAGT+TGG + chr3_4:12402764-12402783 Msa0490740:three_prime_UTR 55.0%
CAACCCTGCTTACGACGTGG+TGG - chr3_4:12401145-12401164 None:intergenic 60.0%
CACCACGTCGTAAGCAGGGT+TGG + chr3_4:12401143-12401162 Msa0490740:CDS 60.0%
GTCCAACCCTGCTTACGACG+TGG - chr3_4:12401148-12401167 None:intergenic 60.0%
CGTCGTAAGCAGGGTTGGAC+AGG + chr3_4:12401148-12401167 Msa0490740:CDS 60.0%
TCTGTCTCAGCTGTCACGGC+AGG - chr3_4:12402252-12402271 None:intergenic 60.0%
!! GTACCAGTCTCGGTGCTCTC+GGG - chr3_4:12402336-12402355 None:intergenic 60.0%
GCTGAACTGCCTACTCGGTC+CGG - chr3_4:12402732-12402751 None:intergenic 60.0%
GACCGAGTAGGCAGTTCAGC+CGG + chr3_4:12402732-12402751 Msa0490740:three_prime_UTR 60.0%
!! CAACCCGAGAGCACCGAGAC+TGG + chr3_4:12402330-12402349 Msa0490740:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 12399910 12402863 12399910 ID=Msa0490740;Name=Msa0490740
chr3_4 mRNA 12399910 12402863 12399910 ID=Msa0490740-mRNA-1;Parent=Msa0490740;Name=Msa0490740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=282|1|1|1|1|1|3|405|251
chr3_4 exon 12399910 12400359 12399910 ID=Msa0490740-mRNA-1:exon:3830;Parent=Msa0490740-mRNA-1
chr3_4 exon 12401082 12401219 12401082 ID=Msa0490740-mRNA-1:exon:3831;Parent=Msa0490740-mRNA-1
chr3_4 exon 12402009 12402863 12402009 ID=Msa0490740-mRNA-1:exon:3832;Parent=Msa0490740-mRNA-1
chr3_4 five_prime_UTR 12399910 12400191 12399910 ID=Msa0490740-mRNA-1:five_prime_utr;Parent=Msa0490740-mRNA-1
chr3_4 CDS 12400192 12400359 12400192 ID=Msa0490740-mRNA-1:cds;Parent=Msa0490740-mRNA-1
chr3_4 CDS 12401082 12401219 12401082 ID=Msa0490740-mRNA-1:cds;Parent=Msa0490740-mRNA-1
chr3_4 CDS 12402009 12402458 12402009 ID=Msa0490740-mRNA-1:cds;Parent=Msa0490740-mRNA-1
chr3_4 three_prime_UTR 12402459 12402863 12402459 ID=Msa0490740-mRNA-1:three_prime_utr;Parent=Msa0490740-mRNA-1
Gene Sequence

>Msa0490740

ATGGCTTGTGCATTGCAAGCTACCATAACAACCAACACATGTGCCTTTTCAACAAGAAAATTCTCCTTGAAGCAACAAAAGATTAACAAGAGAAGTTCATGCATGTTTATTGTTAGAGCTTCTTCTGAGTCTGATTGTAATGAGGAAGAATGTGCCCCTGATAAGGAAGTTGGGAAGGTGAGTATGGAATGGTTAGCAGAAGAGAAGACAAAAGTAGTAGGTACATATCCACCACGTCGTAAGCAGGGTTGGACAGGCTATGTTGAAAAGGATACTGCTGGACAGACAAATATATATTCAGTCGAGCCAGCAGTTTATGTGGCAGAAAGTGCTATAAGTTCAGGAACATCTGGTTCTTCTTCTGATGGAGCTCAGAACACAGCAGCAATTGCTGGTGGTCTTGCACTGATCTCAATTGCCGCGGCATCATCAATACTTCTACAGGTTGGTAAGAATTCTCCTCCTCAGGTCCAAAAAGTCGAATACTCCGGGCCATCACTTAGTTACTACATCAACGAGTTCAAAACACAAGAAATTACTCAAGCGCCTGCCGTGACAGCTGAGACAGAGCTATCATCATCATCTACTCAACCTGAGAGCACTGAGACAGTACTATCATCATCTGTTCAACCCGAGAGCACCGAGACTGGTACATCATTATCTGTTCAACCTGAAAACTCTCCTGCAGAAGTTCCTCAAGTTCAAGTTGAATCTCAAATTCAGCCAGAGACCTCAAGTGTGGACATTGTATCTTAA

Protein sequence

>Msa0490740

MACALQATITTNTCAFSTRKFSLKQQKINKRSSCMFIVRASSESDCNEEECAPDKEVGKVSMEWLAEEKTKVVGTYPPRRKQGWTGYVEKDTAGQTNIYSVEPAVYVAESAISSGTSGSSSDGAQNTAAIAGGLALISIAAASSILLQVGKNSPPQVQKVEYSGPSLSYYINEFKTQEITQAPAVTAETELSSSSTQPESTETVLSSSVQPESTETGTSLSVQPENSPAEVPQVQVESQIQPETSSVDIVS*