AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0273780


Find 330 sgRNAs with CRISPR-Local

Find 1842 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-GE

Chromosome Type Strat End Strand Name
chr2_3 gene 5368005 5398479 5368005 ID=Msa0273780;Name=Msa0273780
chr2_3 mRNA 5368005 5398479 5368005 ID=Msa0273780-mRNA-1;Parent=Msa0273780;Name=Msa0273780-mRNA-1;_AED=0.21;_eAED=0.21;_QI=24|0.57|0.73|1|0.92|0.86|15|223|1344
chr2_3 exon 5368005 5368769 5368005 ID=Msa0273780-mRNA-1:exon:2606;Parent=Msa0273780-mRNA-1
chr2_3 exon 5370969 5371146 5370969 ID=Msa0273780-mRNA-1:exon:2605;Parent=Msa0273780-mRNA-1
chr2_3 exon 5371452 5371809 5371452 ID=Msa0273780-mRNA-1:exon:2604;Parent=Msa0273780-mRNA-1
chr2_3 exon 5372720 5373292 5372720 ID=Msa0273780-mRNA-1:exon:2603;Parent=Msa0273780-mRNA-1
chr2_3 exon 5377001 5377112 5377001 ID=Msa0273780-mRNA-1:exon:2602;Parent=Msa0273780-mRNA-1
chr2_3 exon 5378424 5378645 5378424 ID=Msa0273780-mRNA-1:exon:2601;Parent=Msa0273780-mRNA-1
chr2_3 exon 5381666 5382091 5381666 ID=Msa0273780-mRNA-1:exon:2600;Parent=Msa0273780-mRNA-1
chr2_3 exon 5385804 5386020 5385804 ID=Msa0273780-mRNA-1:exon:2599;Parent=Msa0273780-mRNA-1
chr2_3 exon 5386503 5386860 5386503 ID=Msa0273780-mRNA-1:exon:2598;Parent=Msa0273780-mRNA-1
chr2_3 exon 5386956 5387053 5386956 ID=Msa0273780-mRNA-1:exon:2597;Parent=Msa0273780-mRNA-1
chr2_3 exon 5387191 5387752 5387191 ID=Msa0273780-mRNA-1:exon:2596;Parent=Msa0273780-mRNA-1
chr2_3 exon 5396973 5397084 5396973 ID=Msa0273780-mRNA-1:exon:2595;Parent=Msa0273780-mRNA-1
chr2_3 exon 5398001 5398196 5398001 ID=Msa0273780-mRNA-1:exon:2594;Parent=Msa0273780-mRNA-1
chr2_3 exon 5398316 5398401 5398316 ID=Msa0273780-mRNA-1:exon:2593;Parent=Msa0273780-mRNA-1
chr2_3 exon 5398461 5398479 5398461 ID=Msa0273780-mRNA-1:exon:2592;Parent=Msa0273780-mRNA-1
chr2_3 five_prime_UTR 5398461 5398479 5398461 ID=Msa0273780-mRNA-1:five_prime_utr;Parent=Msa0273780-mRNA-1
chr2_3 five_prime_UTR 5398397 5398401 5398397 ID=Msa0273780-mRNA-1:five_prime_utr;Parent=Msa0273780-mRNA-1
chr2_3 CDS 5398316 5398396 5398316 ID=Msa0273780-mRNA-1:cds;Parent=Msa0273780-mRNA-1
chr2_3 CDS 5398001 5398196 5398001 ID=Msa0273780-mRNA-1:cds;Parent=Msa0273780-mRNA-1
chr2_3 CDS 5396973 5397084 5396973 ID=Msa0273780-mRNA-1:cds;Parent=Msa0273780-mRNA-1
chr2_3 CDS 5387191 5387752 5387191 ID=Msa0273780-mRNA-1:cds;Parent=Msa0273780-mRNA-1
chr2_3 CDS 5386956 5387053 5386956 ID=Msa0273780-mRNA-1:cds;Parent=Msa0273780-mRNA-1
chr2_3 CDS 5386503 5386860 5386503 ID=Msa0273780-mRNA-1:cds;Parent=Msa0273780-mRNA-1
chr2_3 CDS 5385804 5386020 5385804 ID=Msa0273780-mRNA-1:cds;Parent=Msa0273780-mRNA-1
chr2_3 CDS 5381666 5382091 5381666 ID=Msa0273780-mRNA-1:cds;Parent=Msa0273780-mRNA-1
chr2_3 CDS 5378424 5378645 5378424 ID=Msa0273780-mRNA-1:cds;Parent=Msa0273780-mRNA-1
chr2_3 CDS 5377001 5377112 5377001 ID=Msa0273780-mRNA-1:cds;Parent=Msa0273780-mRNA-1
chr2_3 CDS 5372720 5373292 5372720 ID=Msa0273780-mRNA-1:cds;Parent=Msa0273780-mRNA-1
chr2_3 CDS 5371452 5371809 5371452 ID=Msa0273780-mRNA-1:cds;Parent=Msa0273780-mRNA-1
chr2_3 CDS 5370969 5371146 5370969 ID=Msa0273780-mRNA-1:cds;Parent=Msa0273780-mRNA-1
chr2_3 CDS 5368228 5368769 5368228 ID=Msa0273780-mRNA-1:cds;Parent=Msa0273780-mRNA-1
chr2_3 three_prime_UTR 5368005 5368227 5368005 ID=Msa0273780-mRNA-1:three_prime_utr;Parent=Msa0273780-mRNA-1
Gene Sequence

>Msa0273780

ATGGCAATGAACATCATCATTTTCACAACATGTCTCTTCCTCCTCCTCCTTCCATTGGTGTCATGCACCAAAAACAATGAGGTTTATCTAGTTGAATTTGGAGAGCACAATAATGGAGATAAAACATTGCATGAAATAGAGAAAACACATCACTCTTATTTGCTTTTGGTAAAAGAAACTGAGGAAGAAGCCCGGGCTTCCCATCTTTACAGTTACAAACACACTTTCAATGGCTTTGCAGCATTACTAACACCTAATGAAGCCAATAATCTTTCAGGTGTGTGGCCAGATTCAAAGAGCTTCTGTGATGAAGGGATGGGTCCTGTGCCACAGAAATGGAAAGGAGTGTGCCAAAATGGAACTGATTTTGGTTCGTCTAACTGCAATAGAAAGATAATTGGAGCAAGGTACTATTTGCAAGGTTATGAAAAAATCTATGGCCCACTAAACGAAGAGGAGGATTACAAATCAGCTCGCGACAAAGATGGTCATGGAACACACACAGCTTCAATAGTAGCAGGGCGAGCAGTTGAAAATGCATCAGCACTCGGAGGCTTCGCTAGAGGCACAGCCTCTGGCGGAGCCCCATTAGCTCGCCTTGCAATATACAAAGCATGTTGGCCAATGAAAGGAAAACCAAAAAATGATGGAAATGTTTGCACTAACATTGATATGCTTAAAGCTATAGATGATGCAATTGAAGATGGTGTTGATGTTATAAACCTTTCCATTGGGTTTCCTGCGCCATTGAAATATGAGGATGATGTGATTGCTAAGGGTGCATTACAAGCTGTAAGGAAAAACATTGTTGTTGTTTGCAGTGCTGGAAATGCTGGCCCTTCTCCTCATAGTTTGTCAAATCCTGCTCCTTGGATAATCACTGTTGGTGCTAGTACTGTCGATCGAACCTTTCTTGCTCCAATTAAGCTGAGCAATGCCACAAGTATCGAGGGTAGATCAATCACTCCACTCCGCATGGGAAATAGTTTCCGTCCATTAGTTCTGGCAAGTGATGTTGAATATGCAGGCATACTAAGTGTAAATTCTAGTTATTGCCTAGACAATACCCTTGATCCAAGCAAGGTCAAGGGAAAGATAGTGTTGTGCATGAGAGGGCAAGGTGGAAGAGTGAAAAAAAGTTTGGAAGTTCAAAGAGCTGGTGGTGTTGCTTTAATACTTGGGAACAATAAAGCTTATGCAAATGATGTACCTTCTGATCCTTATTTCATTCCAACCACTGGAGTAACCTATGAGAATACCTTAAAACTTGTTCAATATATTCATTCTTCTCCTAATCCAATGGCACAACTTTTGCCTGGAAGAACTGTGTTAGATACTAAACCAGCACCCTCTATGGCCATCTTCTCTAGTAGAGGTCCCAATATAATTGACCCTAATATTCTAAAGCCTGACATAACAGCTCCTGGAGTAGACATATTGGCAGCATGGACAGCTAAAGACGGACCGACACGAATGACATTTCAGGATAAACGAGTTGTAAAGTACAATATCTTTTCAGGAACTTCAATGTCTTGCCCTCATGTTTCTGCTGCATCAGTTCTTCTCAAAGCAATGCACCCTACTTGGAGTCCTGCTGCTATAAGGTCTGCCCTCATGACATCAGGAAATCCAATTACAGATGAAACAGGAAATCCTGCAACACCTTTTTCGATGGGTTCAGGCCACTTCTACCCCAAAAGAGCATCAGATCCAGGACTCATTTATGATGCATCCTACATGGATTACCTTCTTTACCTTTGCAATCTTAATTTAACACAACACATAAACCTTACATATAATTGTCCAAACCCACTACCTCAACCATTTGATCTCAACTATCCATCTATACAAATCCATAAACTCAATTACACCAAAACTATAAAGAGGACAGTCACCAATGTTGGTAGTAGCAAGTCTGTTTACAAGTTTATTGCTAATCCACCAAAGGAATTTACCATTAAAGCCACTCCAAGTGTTCTGAAGTTTAAACATGTTGGACAGAAAAGGAATTTTGTCATCACAGTGACTGAAAATAGAGATCAGTTACCAAGAATTCATATTGGATTTTTGTCACAGGTTTTTCTAGTTGAATTTGGAGAGCACAATAATGGAGATAAAACACTGCATGAAATAGAGAATACACATCACTCTTATTTGCTTTTGGTAAAAGAAACTGAGGAGGAAGCTAGGGTTTCCCTTCTTTATAGTTATAAACACACTTTCAATGGTTTTGCAGCATTACTTACTCCAAATGAAGCCAATAATCTCTCAGGTGTGTGGCCAGATTCAAAGAGCTTCAGTGATAAAGGGATGGGTCCTGTTCCAAAGAAATGGAAAGGAATGTGCATAAATGGAACTGATTTTGATTCATCTAAATGCAATAGAAAGATAGTTGGAGCAAGGTACTACTTGCAAGGTTATGAAAATCATTACGGCCCACTAAACGAAGAGGAGGATTACAAATCAGCTCTCGACAAAGACGGCCATGGAACACACACATCTTCAATAGTGGCAGGGCGAGCCATTAAAAATGCTGCAGCACTCGGAGGCTTCGCCAGCGGAACAGCCTCTGGCGGAGCCCCCTTAGCTCGCCTTGCCATATACAAAGCATGTTGGCCAATAAAAGGAAAACCAAAAAATGAAGGAAACACTTGCGCAAACATTGATATGCTTAAAGCTATAGATGATGCAATTGAAGATGGTGTTGATGTTTTAAGCATTTCCATAGGGCATTATGGTCCATTGAAATATGAGGATGATGTGATTGCTAAGGGGGCATTACAAGCTGTAAGGAAAAACATTGTGGTTGTTTGTAGTGCTGGAAATTTTGGTCCTTTTCCACATAGTTTGTCAAATCCTGCCCCTTGGATCATCACCGTTGGTGCTAGTACTGTCGATCGAACCTTTCTTGCTCCAATTAAACTTAACAACGGCACAACCATTGAGGTAAATTTCAATTATTGCCAAGACAATACCCTTGATCCAAGCAAGGTCAAGGGGAAGATAGTTTTGTGCATGAGAGGACAAGGTGGAAGACTGAACAAAAGTTTTGAAGTTCAAAGAGCTGGTGGTGTTGGTTTAATACTTGGTAACAATAAAGCTTATGCAAATGATGTACCTTCTGATCCTTATTTCATTCCAACCACTGGAGTGAACTATGAGAATACCTTAAAACTTGTTCAATATATCAATTCTTCACATAATCCAATGGCACAACTTCTGCCTGGAAGAACTGTGTTAGATACCAAACCAGCACCCTCTATGGCCATGTTCTCTAGCAGAGGTCCCAACATAATTGACCCTAATATTCTAAAGCCTGATATAACAGCTCCTGGAGTAGACATATTGGCAGCATGGACAGCTAAAGATGGACCTACACGAATGAATTGCGATAAACGAGTTGTTAAGTACAATATCATTTCAGGAACTTCAATGTCTTGCCCTCATGTTTCTGCTGCATCAGTTCTTCTCAAAGCCATGCACCCTACTTGGACTAAAACAACAGACAACACAGGAAATCCAATTACAGATGAAACAGGAAATCCTGCAACACCTTTTTCAATGGGTTCAGGCCACTTCAGCCCTAAAAGAGCATCTAATCCAGGACTCATTTATGATGCATCCTATATGGATTACCTTCTTTACCTTTGCAATCTTAATTTAACACAACACATAAACCTTACATATAATTGTCCAAACCCACTACCTCAACCATTTGATCTCAACTATCCATCTATACAAATCCATAAACTCAATTACACCAAAACTATAAAGAGGACAGTCACCAATGTTGGTAGGACCAAGAGTGTTTACAAGTTTATTGCTAAGTCATCAAAGGAATTTACTATTAAAGCCACTCCAAGTGTTCTGAAATTTACACATGTTGGACAGAAAAGGAATTTTGTAATCACAGTGACAGCAAATAAAGATCAGTTACCAAGAAAGTATGATCCTGAGAAGTACTTTTTTGGTTGGTATACTTGGACTGATAAACATCATATTGTAAGAAGTCCAGTGGCTGTGTCTTTTCAATAA

Protein sequence

>Msa0273780

MAMNIIIFTTCLFLLLLPLVSCTKNNEVYLVEFGEHNNGDKTLHEIEKTHHSYLLLVKETEEEARASHLYSYKHTFNGFAALLTPNEANNLSGVWPDSKSFCDEGMGPVPQKWKGVCQNGTDFGSSNCNRKIIGARYYLQGYEKIYGPLNEEEDYKSARDKDGHGTHTASIVAGRAVENASALGGFARGTASGGAPLARLAIYKACWPMKGKPKNDGNVCTNIDMLKAIDDAIEDGVDVINLSIGFPAPLKYEDDVIAKGALQAVRKNIVVVCSAGNAGPSPHSLSNPAPWIITVGASTVDRTFLAPIKLSNATSIEGRSITPLRMGNSFRPLVLASDVEYAGILSVNSSYCLDNTLDPSKVKGKIVLCMRGQGGRVKKSLEVQRAGGVALILGNNKAYANDVPSDPYFIPTTGVTYENTLKLVQYIHSSPNPMAQLLPGRTVLDTKPAPSMAIFSSRGPNIIDPNILKPDITAPGVDILAAWTAKDGPTRMTFQDKRVVKYNIFSGTSMSCPHVSAASVLLKAMHPTWSPAAIRSALMTSGNPITDETGNPATPFSMGSGHFYPKRASDPGLIYDASYMDYLLYLCNLNLTQHINLTYNCPNPLPQPFDLNYPSIQIHKLNYTKTIKRTVTNVGSSKSVYKFIANPPKEFTIKATPSVLKFKHVGQKRNFVITVTENRDQLPRIHIGFLSQVFLVEFGEHNNGDKTLHEIENTHHSYLLLVKETEEEARVSLLYSYKHTFNGFAALLTPNEANNLSGVWPDSKSFSDKGMGPVPKKWKGMCINGTDFDSSKCNRKIVGARYYLQGYENHYGPLNEEEDYKSALDKDGHGTHTSSIVAGRAIKNAAALGGFASGTASGGAPLARLAIYKACWPIKGKPKNEGNTCANIDMLKAIDDAIEDGVDVLSISIGHYGPLKYEDDVIAKGALQAVRKNIVVVCSAGNFGPFPHSLSNPAPWIITVGASTVDRTFLAPIKLNNGTTIEVNFNYCQDNTLDPSKVKGKIVLCMRGQGGRLNKSFEVQRAGGVGLILGNNKAYANDVPSDPYFIPTTGVNYENTLKLVQYINSSHNPMAQLLPGRTVLDTKPAPSMAMFSSRGPNIIDPNILKPDITAPGVDILAAWTAKDGPTRMNCDKRVVKYNIISGTSMSCPHVSAASVLLKAMHPTWTKTTDNTGNPITDETGNPATPFSMGSGHFSPKRASNPGLIYDASYMDYLLYLCNLNLTQHINLTYNCPNPLPQPFDLNYPSIQIHKLNYTKTIKRTVTNVGRTKSVYKFIAKSSKEFTIKATPSVLKFTHVGQKRNFVITVTANKDQLPRKYDPEKYFFGWYTWTDKHHIVRSPVAVSFQ*