AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0469840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469840 MtrunA17_Chr3g0124681 99.259 270 2 0 1 270 1 270 0.0 526
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469840 AT1G44575.1 72.426 272 65 4 1 270 1 264 1.38e-110 320
Msa0469840 AT1G44575.3 72.426 272 65 4 1 270 1 264 1.38e-110 320
Msa0469840 AT1G44575.2 69.271 192 49 4 1 190 1 184 1.27e-61 193
Msa0469840 AT1G44575.2 71.429 49 14 0 194 242 84 132 4.65e-16 75.1

Find 88 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGGTTCAATTTCAGTAAT+TGG 0.150098 3_3:+71829134 None:intergenic
AATTCTAGCACAATTGAATT+TGG 0.184443 3_3:-71829673 Msa0469840:CDS
AAATATTATCTTTAATAATA+AGG 0.211059 3_3:+71831297 None:intergenic
TGCATGTTAGGTCCTTTATT+TGG 0.212751 3_3:-71829281 Msa0469840:intron
GATGGTATCTTTGGAACTTC+TGG 0.221695 3_3:-71830813 Msa0469840:CDS
TTGAGTCATGTTAGTGTCTT+TGG 0.244409 3_3:+71828766 None:intergenic
AACAAACAATTCATTGGATT+TGG 0.255758 3_3:+71829253 None:intergenic
AATTACAGTGTCAAAGATTA+AGG 0.268924 3_3:-71831110 Msa0469840:CDS
TTGATTGGAGAAATTATTAC+TGG 0.283745 3_3:-71829197 Msa0469840:CDS
TTTGGAACTTCTGGAGGATT+TGG 0.286142 3_3:-71830804 Msa0469840:CDS
AAGGTTGAAGATGGTATCTT+TGG 0.291595 3_3:-71830822 Msa0469840:CDS
AGAGGCTCAGCTTCATAAAT+TGG 0.298533 3_3:+71829639 None:intergenic
CATTTGCAGGCATCAATATT+AGG 0.305704 3_3:-71829717 Msa0469840:intron
TTCATTGCTGCTTTGAATCC+TGG 0.310194 3_3:-71829086 Msa0469840:CDS
TGTTGGAAGATTGGCTCAAT+TGG 0.313349 3_3:-71829234 Msa0469840:CDS
CCATCTTCAACCTTTGGCTT+TGG 0.320599 3_3:+71830831 None:intergenic
TCTTCCAACAAACAATTCAT+TGG 0.342233 3_3:+71829247 None:intergenic
TCTCGTCTATTGTACTATAT+TGG 0.359613 3_3:+71831380 None:intergenic
GATTTGGTGAATCCAAATAA+AGG 0.360093 3_3:+71829269 None:intergenic
TGTGATAATATTTCCATTTG+AGG 0.365580 3_3:+71831408 None:intergenic
GTGGTTCAATTTCAGTAATT+GGG 0.365857 3_3:+71829135 None:intergenic
GCACAATTGAATTTGGAAAC+TGG 0.368263 3_3:-71829666 Msa0469840:CDS
TTAGATCAGCTCTTGGTCTC+AGG 0.379018 3_3:-71829500 Msa0469840:CDS
GTTACAAAAGTGCCAGTTCC+AGG 0.380949 3_3:+71829068 None:intergenic
TGAATTGTTTGTTGGAAGAT+TGG 0.385211 3_3:-71829243 Msa0469840:CDS
AAGATACCATCTTCAACCTT+TGG 0.387880 3_3:+71830825 None:intergenic
ATAAATCATAATACCTCAAA+TGG 0.391937 3_3:-71831421 Msa0469840:five_prime_UTR
AAATCCAATGAATTGTTTGT+TGG 0.392325 3_3:-71829251 Msa0469840:CDS
AAGCAGAATGAACTCTTTGT+TGG 0.396845 3_3:-71830774 Msa0469840:CDS
AGTGTCAAAGATTAAGGCCT+AGG 0.399815 3_3:-71831104 Msa0469840:CDS
TATACATTATTTAAGTAGTA+AGG 0.400009 3_3:+71828811 None:intergenic
GTTGGAAGATTGGCTCAATT+GGG 0.400071 3_3:-71829233 Msa0469840:CDS
TAGTACCTTAGCAGGGGCTT+TGG 0.417597 3_3:+71830990 None:intergenic
TGGAGAAATTATTACTGGTA+AGG 0.421923 3_3:-71829192 Msa0469840:CDS
ATCACGTACATTCACTACTT+TGG 0.425907 3_3:-71831031 Msa0469840:CDS
ATATTAGGTGAAGCATTAAC+TGG 0.440539 3_3:-71829702 Msa0469840:CDS
AAAATGAGTAGTACCTTAGC+AGG 0.443793 3_3:+71830982 None:intergenic
CACTTAGAATTTGAAGGAAG+TGG 0.453095 3_3:+71831060 None:intergenic
TTCACCTTGCTAGGAGCCAT+TGG 0.454770 3_3:-71829597 Msa0469840:CDS
GGAGTTATTCCTCCAGGAAA+AGG 0.455401 3_3:-71829525 Msa0469840:CDS
GCTGCTTTGAATCCTGGAAC+TGG 0.462882 3_3:-71829080 Msa0469840:CDS
CTAGGAGCCATTGGAGCTCT+AGG 0.483439 3_3:-71829588 Msa0469840:CDS
GCTCAGCTCAACATTGAGAC+TGG 0.484090 3_3:-71829161 Msa0469840:CDS
TATACCCTAAAATAAAATGA+AGG 0.486869 3_3:+71828903 None:intergenic
CTCAGCTCAACATTGAGACT+GGG 0.497814 3_3:-71829160 Msa0469840:CDS
GGAATAACTCCTCCAGTGTT+AGG 0.502221 3_3:+71829537 None:intergenic
AATAATAAGGTGTGTGGATG+TGG 0.504211 3_3:+71831310 None:intergenic
GGAGAAATTATTACTGGTAA+GGG 0.507917 3_3:-71829191 Msa0469840:CDS
GTTGGTCGTGTTGCTATGAT+CGG 0.516308 3_3:-71830756 Msa0469840:CDS
ACTTAGAATTTGAAGGAAGT+GGG 0.519799 3_3:+71831061 None:intergenic
GACACTGTAATTGAAGCAAA+GGG 0.525415 3_3:+71831121 None:intergenic
TGACACTGTAATTGAAGCAA+AGG 0.531256 3_3:+71831120 None:intergenic
TTGCTTGTGTTTGTGTTGTG+TGG 0.535772 3_3:+71831230 None:intergenic
ATCTTTAATAATAAGGTGTG+TGG 0.536802 3_3:+71831304 None:intergenic
TAGATCAGCTCTTGGTCTCA+GGG 0.538741 3_3:-71829499 Msa0469840:CDS
GGTGAAGCATTAACTGGCAA+AGG 0.540137 3_3:-71829696 Msa0469840:CDS
TGTAAGAAAGTATCAATGAC+AGG 0.540598 3_3:+71831340 None:intergenic
TGATACTCTAGTCTTATGTA+AGG 0.541107 3_3:-71828838 Msa0469840:three_prime_UTR
AAAGGATTTAGATCAGCTCT+TGG 0.544811 3_3:-71829507 Msa0469840:CDS
TTAAGTTATCTCTTCACTTG+AGG 0.552389 3_3:-71831487 Msa0469840:five_prime_UTR
GGTATCTTTGGAACTTCTGG+AGG 0.556616 3_3:-71830810 Msa0469840:CDS
CACTTGAGGCAGAGAAGACA+AGG 0.557153 3_3:-71831473 Msa0469840:five_prime_UTR
AGGGTCTTTCTTCAAATCCA+CGG 0.566938 3_3:+71831140 None:intergenic
CCAAAGCCAAAGGTTGAAGA+TGG 0.567917 3_3:-71830831 Msa0469840:CDS
ATACCCTAAAATAAAATGAA+GGG 0.568348 3_3:+71828904 None:intergenic
TTCTTTAAGTACAAACAAAG+TGG 0.571060 3_3:+71829014 None:intergenic
TGTCTCTAGTACTTATTCCG+TGG 0.572333 3_3:-71831157 Msa0469840:CDS
ACTGGAGGAGTTATTCCTCC+AGG 0.573363 3_3:-71829531 Msa0469840:CDS
AACAACTCTATCATCTCCAT+TGG 0.578688 3_3:-71828939 Msa0469840:three_prime_UTR
AAATGAGTAGTACCTTAGCA+GGG 0.579295 3_3:+71830983 None:intergenic
GAGCTAACATAGTATAGCAA+TGG 0.580993 3_3:-71831205 Msa0469840:exon
AGCTCCAATGGCTCCTAGCA+AGG 0.581456 3_3:+71829593 None:intergenic
AAAGACCAAAGCCCCTGCTA+AGG 0.585648 3_3:-71830995 Msa0469840:intron
ACGGTCACCTAGAGCTCCAA+TGG 0.591758 3_3:+71829581 None:intergenic
TCAGCTCTTGGTCTCAGGGA+AGG 0.594171 3_3:-71829495 Msa0469840:CDS
AGGGACAAATGTGTAACCAA+TGG 0.597527 3_3:+71828923 None:intergenic
GCTCTTGGTCTCAGGGAAGG+AGG 0.614124 3_3:-71829492 Msa0469840:intron
AATAAGGTGTGTGGATGTGG+TGG 0.615196 3_3:+71831313 None:intergenic
GTTGATGATGAGCCTAACAC+TGG 0.618935 3_3:-71829549 Msa0469840:CDS
ATAACATTGAACAACACTAG+TGG 0.664923 3_3:+71829116 None:intergenic
ATAGTACAATAGACGAGACG+TGG 0.669845 3_3:-71831375 Msa0469840:five_prime_UTR
AATGAGTAGTACCTTAGCAG+GGG 0.688643 3_3:+71830984 None:intergenic
TCAGCTCAACATTGAGACTG+GGG 0.690397 3_3:-71829159 Msa0469840:CDS
TAGTACAATAGACGAGACGT+GGG 0.705825 3_3:-71831374 Msa0469840:five_prime_UTR
AACGAAACATCAGAAAACCT+AGG 0.707531 3_3:+71831087 None:intergenic
ATTGGAGCTCTAGGTGACCG+TGG 0.710208 3_3:-71829579 Msa0469840:CDS
CATCATCAACAAATTTACCA+CGG 0.716251 3_3:+71829562 None:intergenic
GATGATGAGCCTAACACTGG+AGG 0.724745 3_3:-71829546 Msa0469840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACATAATTTTTAATATCAT+TGG + chr3_3:71830057-71830076 None:intergenic 10.0%
!! CTATAAAAATTAAATGTTAA+AGG + chr3_3:71830192-71830211 None:intergenic 10.0%
!!! TTTACATGTAAAAAAATTTT+GGG - chr3_3:71830218-71830237 Msa0469840:intron 10.0%
!! TTGACAAATATTAATTAATT+AGG - chr3_3:71830374-71830393 Msa0469840:intron 10.0%
!! AATATTAATTAATTAGGATT+AGG - chr3_3:71830380-71830399 Msa0469840:intron 10.0%
!!! CAATTTTAGTAATTTTATTG+AGG - chr3_3:71830095-71830114 Msa0469840:intron 15.0%
!!! CTTTACATGTAAAAAAATTT+TGG - chr3_3:71830217-71830236 Msa0469840:intron 15.0%
!!! AAAAAATTTTGGGAAAAATT+TGG - chr3_3:71830228-71830247 Msa0469840:intron 15.0%
!!! TTCAAAATGTTCTTTAAAAA+TGG - chr3_3:71830436-71830455 Msa0469840:intron 15.0%
!! TATATCATGCAAATTAAAAA+GGG - chr3_3:71830517-71830536 Msa0469840:intron 15.0%
!!! ATTTTCAAAATTATTAAGGT+TGG - chr3_3:71830951-71830970 Msa0469840:intron 15.0%
!! TATACATTATTTAAGTAGTA+AGG + chr3_3:71831475-71831494 None:intergenic 15.0%
!!! TATGAATGAACATCATTTTT+GGG + chr3_3:71828838-71828857 None:intergenic 20.0%
!!! TTATGAATGAACATCATTTT+TGG + chr3_3:71828839-71828858 None:intergenic 20.0%
!! ATAAATCATAATACCTCAAA+TGG - chr3_3:71828862-71828881 Msa0469840:three_prime_UTR 20.0%
!!! ATTGACTTAAGTAATAGTTT+AGG + chr3_3:71829781-71829800 None:intergenic 20.0%
!!! TAAAGAACATTTTGAAGTTT+TGG + chr3_3:71830432-71830451 None:intergenic 20.0%
!! GTATATCATGCAAATTAAAA+AGG - chr3_3:71830516-71830535 Msa0469840:intron 20.0%
!!! AATTTATTTTTGTGCATGTT+AGG - chr3_3:71830990-71831009 Msa0469840:intron 20.0%
!! ATACCCTAAAATAAAATGAA+GGG + chr3_3:71831382-71831401 None:intergenic 20.0%
!! TATACCCTAAAATAAAATGA+AGG + chr3_3:71831383-71831402 None:intergenic 20.0%
!!! ATGAATGAACATCATTTTTG+GGG + chr3_3:71828837-71828856 None:intergenic 25.0%
! TGTGATAATATTTCCATTTG+AGG + chr3_3:71828878-71828897 None:intergenic 25.0%
! ATCTTTAATAATAAGGTGTG+TGG + chr3_3:71828982-71829001 None:intergenic 25.0%
! AATTACAGTGTCAAAGATTA+AGG - chr3_3:71829173-71829192 Msa0469840:CDS 25.0%
! GAAAAACACTTAGAATTTGA+AGG + chr3_3:71829232-71829251 None:intergenic 25.0%
! GGTTTGATGAAATATATTTC+AGG - chr3_3:71829418-71829437 Msa0469840:intron 25.0%
! ATAATCTCGCAAATGTTTAT+AGG + chr3_3:71829712-71829731 None:intergenic 25.0%
! AAAAAAATGAACCTGTCAAA+AGG - chr3_3:71829974-71829993 Msa0469840:intron 25.0%
! AAAAAATGAACCTGTCAAAA+GGG - chr3_3:71829975-71829994 Msa0469840:intron 25.0%
!! GCTTTTCTTTAACTAACTTT+TGG + chr3_3:71830489-71830508 None:intergenic 25.0%
! AATTCTAGCACAATTGAATT+TGG - chr3_3:71830610-71830629 Msa0469840:intron 25.0%
! AGGTGAAAATGATGAAAAAT+AGG + chr3_3:71830673-71830692 None:intergenic 25.0%
! AACAAACAATTCATTGGATT+TGG + chr3_3:71831033-71831052 None:intergenic 25.0%
! AAATCCAATGAATTGTTTGT+TGG - chr3_3:71831032-71831051 Msa0469840:CDS 25.0%
! TTGATTGGAGAAATTATTAC+TGG - chr3_3:71831086-71831105 Msa0469840:CDS 25.0%
! TTCTTTAAGTACAAACAAAG+TGG + chr3_3:71831272-71831291 None:intergenic 25.0%
!!! TTGTCCCTTCATTTTATTTT+AGG - chr3_3:71831375-71831394 Msa0469840:five_prime_UTR 25.0%
!!! TGTCCCTTCATTTTATTTTA+GGG - chr3_3:71831376-71831395 Msa0469840:five_prime_UTR 25.0%
TTAAGTTATCTCTTCACTTG+AGG - chr3_3:71828796-71828815 Msa0469840:three_prime_UTR 30.0%
TCTCGTCTATTGTACTATAT+TGG + chr3_3:71828906-71828925 None:intergenic 30.0%
!! TGTAAGAAAGTATCAATGAC+AGG + chr3_3:71828946-71828965 None:intergenic 30.0%
ACTTAGAATTTGAAGGAAGT+GGG + chr3_3:71829225-71829244 None:intergenic 30.0%
!! ATTTGAGAGCACTATGAATT+TGG - chr3_3:71829397-71829416 Msa0469840:intron 30.0%
GTAAAGTGAATATATCAGTG+AGG + chr3_3:71829575-71829594 None:intergenic 30.0%
!! GAAAATAAGACAAGTTGGTA+TGG + chr3_3:71829597-71829616 None:intergenic 30.0%
GCAATGAAAATAAGACAAGT+TGG + chr3_3:71829602-71829621 None:intergenic 30.0%
AAAAATGAACCTGTCAAAAG+GGG - chr3_3:71829976-71829995 Msa0469840:intron 30.0%
! CAACTCTAACACTTGTTAAT+TGG - chr3_3:71830145-71830164 Msa0469840:intron 30.0%
! ATATTAGGTGAAGCATTAAC+TGG - chr3_3:71830581-71830600 Msa0469840:intron 30.0%
ATGATGAAAAATAGGAGAAG+AGG + chr3_3:71830665-71830684 None:intergenic 30.0%
CATCATCAACAAATTTACCA+CGG + chr3_3:71830724-71830743 None:intergenic 30.0%
TGTTTATAATAGTGACTAGC+AGG - chr3_3:71830916-71830935 Msa0469840:intron 30.0%
!! GATTTGGTGAATCCAAATAA+AGG + chr3_3:71831017-71831036 None:intergenic 30.0%
TCTTCCAACAAACAATTCAT+TGG + chr3_3:71831039-71831058 None:intergenic 30.0%
! TGAATTGTTTGTTGGAAGAT+TGG - chr3_3:71831040-71831059 Msa0469840:CDS 30.0%
!!! GGTTTTGTTTTCTCTTTGAT+TGG - chr3_3:71831071-71831090 Msa0469840:CDS 30.0%
TGGAGAAATTATTACTGGTA+AGG - chr3_3:71831091-71831110 Msa0469840:CDS 30.0%
GGAGAAATTATTACTGGTAA+GGG - chr3_3:71831092-71831111 Msa0469840:CDS 30.0%
GTGGTTCAATTTCAGTAATT+GGG + chr3_3:71831151-71831170 None:intergenic 30.0%
AGTGGTTCAATTTCAGTAAT+TGG + chr3_3:71831152-71831171 None:intergenic 30.0%
ATAACATTGAACAACACTAG+TGG + chr3_3:71831170-71831189 None:intergenic 30.0%
TGAAAAAAATTTAGGCTGAG+AGG - chr3_3:71831421-71831440 Msa0469840:five_prime_UTR 30.0%
!! TGATACTCTAGTCTTATGTA+AGG - chr3_3:71831445-71831464 Msa0469840:five_prime_UTR 30.0%
AATAATAAGGTGTGTGGATG+TGG + chr3_3:71828976-71828995 None:intergenic 35.0%
GAGCTAACATAGTATAGCAA+TGG - chr3_3:71829078-71829097 Msa0469840:CDS 35.0%
GACACTGTAATTGAAGCAAA+GGG + chr3_3:71829165-71829184 None:intergenic 35.0%
TGACACTGTAATTGAAGCAA+AGG + chr3_3:71829166-71829185 None:intergenic 35.0%
AACGAAACATCAGAAAACCT+AGG + chr3_3:71829199-71829218 None:intergenic 35.0%
CACTTAGAATTTGAAGGAAG+TGG + chr3_3:71829226-71829245 None:intergenic 35.0%
ATCACGTACATTCACTACTT+TGG - chr3_3:71829252-71829271 Msa0469840:CDS 35.0%
AAATGAGTAGTACCTTAGCA+GGG + chr3_3:71829303-71829322 None:intergenic 35.0%
AAAATGAGTAGTACCTTAGC+AGG + chr3_3:71829304-71829323 None:intergenic 35.0%
TGTTAAAAAGCCAAAGCCAA+AGG - chr3_3:71829442-71829461 Msa0469840:intron 35.0%
AAGATACCATCTTCAACCTT+TGG + chr3_3:71829461-71829480 None:intergenic 35.0%
AAGGTTGAAGATGGTATCTT+TGG - chr3_3:71829461-71829480 Msa0469840:intron 35.0%
AAGCAGAATGAACTCTTTGT+TGG - chr3_3:71829509-71829528 Msa0469840:CDS 35.0%
ACAAGTGTTAGAGTTGCAAA+TGG + chr3_3:71830141-71830160 None:intergenic 35.0%
TTGAGAACATTTGACAGCAT+GGG + chr3_3:71830273-71830292 None:intergenic 35.0%
TTTGAGAACATTTGACAGCA+TGG + chr3_3:71830274-71830293 None:intergenic 35.0%
CATAACAATGCAAGTCTTCA+TGG + chr3_3:71830310-71830329 None:intergenic 35.0%
AGGGTAGATAAGTTATGTCA+CGG - chr3_3:71830536-71830555 Msa0469840:intron 35.0%
CATTTGCAGGCATCAATATT+AGG - chr3_3:71830566-71830585 Msa0469840:intron 35.0%
GCACAATTGAATTTGGAAAC+TGG - chr3_3:71830617-71830636 Msa0469840:intron 35.0%
! TTCATCATTTTCACCTTGCT+AGG - chr3_3:71830677-71830696 Msa0469840:intron 35.0%
AAAGGATTTAGATCAGCTCT+TGG - chr3_3:71830776-71830795 Msa0469840:CDS 35.0%
TGCATGTTAGGTCCTTTATT+TGG - chr3_3:71831002-71831021 Msa0469840:CDS 35.0%
AACAACTCTATCATCTCCAT+TGG - chr3_3:71831344-71831363 Msa0469840:five_prime_UTR 35.0%
ATAGTACAATAGACGAGACG+TGG - chr3_3:71828908-71828927 Msa0469840:three_prime_UTR 40.0%
TAGTACAATAGACGAGACGT+GGG - chr3_3:71828909-71828928 Msa0469840:three_prime_UTR 40.0%
TTGCTTGTGTTTGTGTTGTG+TGG + chr3_3:71829056-71829075 None:intergenic 40.0%
TGTCTCTAGTACTTATTCCG+TGG - chr3_3:71829126-71829145 Msa0469840:CDS 40.0%
AGGGTCTTTCTTCAAATCCA+CGG + chr3_3:71829146-71829165 None:intergenic 40.0%
AGTGTCAAAGATTAAGGCCT+AGG - chr3_3:71829179-71829198 Msa0469840:CDS 40.0%
AATGAGTAGTACCTTAGCAG+GGG + chr3_3:71829302-71829321 None:intergenic 40.0%
!! GATGGTATCTTTGGAACTTC+TGG - chr3_3:71829470-71829489 Msa0469840:intron 40.0%
! TTTGGAACTTCTGGAGGATT+TGG - chr3_3:71829479-71829498 Msa0469840:intron 40.0%
! TGGATCCTTGACTAAGGTTT+TGG - chr3_3:71829999-71830018 Msa0469840:intron 40.0%
! GTTAGAGTTGCAAATGGACT+TGG + chr3_3:71830135-71830154 None:intergenic 40.0%
ATGGGCGGATCTAATATGTA+TGG + chr3_3:71830255-71830274 None:intergenic 40.0%
! TCACGGATTGTTTCATTTGC+AGG - chr3_3:71830553-71830572 Msa0469840:intron 40.0%
AGAGGCTCAGCTTCATAAAT+TGG + chr3_3:71830647-71830666 None:intergenic 40.0%
! GATCTAAATCCTTTTCCTGG+AGG + chr3_3:71830770-71830789 None:intergenic 40.0%
! GCTGATCTAAATCCTTTTCC+TGG + chr3_3:71830773-71830792 None:intergenic 40.0%
! TGTTGGAAGATTGGCTCAAT+TGG - chr3_3:71831049-71831068 Msa0469840:CDS 40.0%
! GTTGGAAGATTGGCTCAATT+GGG - chr3_3:71831050-71831069 Msa0469840:CDS 40.0%
!! TTCATTGCTGCTTTGAATCC+TGG - chr3_3:71831197-71831216 Msa0469840:exon 40.0%
AGGGACAAATGTGTAACCAA+TGG + chr3_3:71831363-71831382 None:intergenic 40.0%
AATAAGGTGTGTGGATGTGG+TGG + chr3_3:71828973-71828992 None:intergenic 45.0%
! CCATCTTCAACCTTTGGCTT+TGG + chr3_3:71829455-71829474 None:intergenic 45.0%
CCAAAGCCAAAGGTTGAAGA+TGG - chr3_3:71829452-71829471 Msa0469840:intron 45.0%
!! GGTATCTTTGGAACTTCTGG+AGG - chr3_3:71829473-71829492 Msa0469840:intron 45.0%
! GTTGGTCGTGTTGCTATGAT+CGG - chr3_3:71829527-71829546 Msa0469840:CDS 45.0%
AATGAACCTGTCAAAAGGGG+TGG - chr3_3:71829979-71829998 Msa0469840:intron 45.0%
CCACACCAAAACCTTAGTCA+AGG + chr3_3:71830007-71830026 None:intergenic 45.0%
!! CCTTGACTAAGGTTTTGGTG+TGG - chr3_3:71830004-71830023 Msa0469840:intron 45.0%
AGAACATTTGACAGCATGGG+CGG + chr3_3:71830270-71830289 None:intergenic 45.0%
! GGTGAAGCATTAACTGGCAA+AGG - chr3_3:71830587-71830606 Msa0469840:intron 45.0%
!! GTTGATGATGAGCCTAACAC+TGG - chr3_3:71830734-71830753 Msa0469840:intron 45.0%
GGAATAACTCCTCCAGTGTT+AGG + chr3_3:71830749-71830768 None:intergenic 45.0%
GGAGTTATTCCTCCAGGAAA+AGG - chr3_3:71830758-71830777 Msa0469840:CDS 45.0%
TTAGATCAGCTCTTGGTCTC+AGG - chr3_3:71830783-71830802 Msa0469840:CDS 45.0%
TAGATCAGCTCTTGGTCTCA+GGG - chr3_3:71830784-71830803 Msa0469840:CDS 45.0%
CTCAGCTCAACATTGAGACT+GGG - chr3_3:71831123-71831142 Msa0469840:CDS 45.0%
TCAGCTCAACATTGAGACTG+GGG - chr3_3:71831124-71831143 Msa0469840:CDS 45.0%
!! GTTACAAAAGTGCCAGTTCC+AGG + chr3_3:71831218-71831237 None:intergenic 45.0%
!! AAATATTATCTTTAATAATA+AGG + chr3_3:71828989-71829008 None:intergenic 5.0%
!!! TTTTATTTTCAAAATTATTA+AGG - chr3_3:71830947-71830966 Msa0469840:intron 5.0%
!!! TTTTTTTATGAAAAAAATTT+AGG - chr3_3:71831413-71831432 Msa0469840:five_prime_UTR 5.0%
CACTTGAGGCAGAGAAGACA+AGG - chr3_3:71828810-71828829 Msa0469840:three_prime_UTR 50.0%
AAAGACCAAAGCCCCTGCTA+AGG - chr3_3:71829288-71829307 Msa0469840:intron 50.0%
TAGTACCTTAGCAGGGGCTT+TGG + chr3_3:71829296-71829315 None:intergenic 50.0%
! AAGGATCCACCCCTTTTGAC+AGG + chr3_3:71829988-71830007 None:intergenic 50.0%
AAGGGGTGGATCCTTGACTA+AGG - chr3_3:71829993-71830012 Msa0469840:intron 50.0%
TTCACCTTGCTAGGAGCCAT+TGG - chr3_3:71830686-71830705 Msa0469840:intron 50.0%
GATGATGAGCCTAACACTGG+AGG - chr3_3:71830737-71830756 Msa0469840:intron 50.0%
ACTGGAGGAGTTATTCCTCC+AGG - chr3_3:71830752-71830771 Msa0469840:CDS 50.0%
GCTCAGCTCAACATTGAGAC+TGG - chr3_3:71831122-71831141 Msa0469840:CDS 50.0%
! GCTGCTTTGAATCCTGGAAC+TGG - chr3_3:71831203-71831222 Msa0469840:exon 50.0%
AGCTCCAATGGCTCCTAGCA+AGG + chr3_3:71830693-71830712 None:intergenic 55.0%
CTAGGAGCCATTGGAGCTCT+AGG - chr3_3:71830695-71830714 Msa0469840:intron 55.0%
ACGGTCACCTAGAGCTCCAA+TGG + chr3_3:71830705-71830724 None:intergenic 55.0%
!! ATTGGAGCTCTAGGTGACCG+TGG - chr3_3:71830704-71830723 Msa0469840:intron 55.0%
TCAGCTCTTGGTCTCAGGGA+AGG - chr3_3:71830788-71830807 Msa0469840:CDS 55.0%
GCTCTTGGTCTCAGGGAAGG+AGG - chr3_3:71830791-71830810 Msa0469840:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 71828775 71831530 71828775 ID=Msa0469840;Name=Msa0469840
chr3_3 mRNA 71828775 71831530 71828775 ID=Msa0469840-mRNA-1;Parent=Msa0469840;Name=Msa0469840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=322|1|1|1|1|1|4|274|270
chr3_3 exon 71828775 71829293 71828775 ID=Msa0469840-mRNA-1:exon:17700;Parent=Msa0469840-mRNA-1
chr3_3 exon 71829493 71829730 71829493 ID=Msa0469840-mRNA-1:exon:17699;Parent=Msa0469840-mRNA-1
chr3_3 exon 71830749 71830865 71830749 ID=Msa0469840-mRNA-1:exon:17698;Parent=Msa0469840-mRNA-1
chr3_3 exon 71830996 71831530 71830996 ID=Msa0469840-mRNA-1:exon:17697;Parent=Msa0469840-mRNA-1
chr3_3 five_prime_UTR 71831209 71831530 71831209 ID=Msa0469840-mRNA-1:five_prime_utr;Parent=Msa0469840-mRNA-1
chr3_3 CDS 71830996 71831208 71830996 ID=Msa0469840-mRNA-1:cds;Parent=Msa0469840-mRNA-1
chr3_3 CDS 71830749 71830865 71830749 ID=Msa0469840-mRNA-1:cds;Parent=Msa0469840-mRNA-1
chr3_3 CDS 71829493 71829730 71829493 ID=Msa0469840-mRNA-1:cds;Parent=Msa0469840-mRNA-1
chr3_3 CDS 71829049 71829293 71829049 ID=Msa0469840-mRNA-1:cds;Parent=Msa0469840-mRNA-1
chr3_3 three_prime_UTR 71828775 71829048 71828775 ID=Msa0469840-mRNA-1:three_prime_utr;Parent=Msa0469840-mRNA-1
Gene Sequence

>Msa0469840

ATGGCTCAAACTATGTTGCTCATGTCTAGTGTCTCTAGTACTTATTCCGTGGATTTGAAGAAAGACCCTTTGCTTCAATTACAGTGTCAAAGATTAAGGCCTAGGTTTTCTGATGTTTCGTTCAACCCACTTCCTTCAAATTCTAAGTGTTTTTCATCACGTACATTCACTACTTTGGCTCTATTCAAATCAAAGACCAAAGCCCCTGCTAAGGTTGTTAAAAAGCCAAAGCCAAAGGTTGAAGATGGTATCTTTGGAACTTCTGGAGGATTTGGTTTCACTAAGCAGAATGAACTCTTTGTTGGTCGTGTTGCTATGATCGGTTTTGCAGCATCAATATTAGGTGAAGCATTAACTGGCAAAGGAATTCTAGCACAATTGAATTTGGAAACTGGAATTCCAATTTATGAAGCTGAGCCTCTTCTCCTATTTTTCATCATTTTCACCTTGCTAGGAGCCATTGGAGCTCTAGGTGACCGTGGTAAATTTGTTGATGATGAGCCTAACACTGGAGGAGTTATTCCTCCAGGAAAAGGATTTAGATCAGCTCTTGGTCTCAGGGAAGGAGGTCCTTTATTTGGATTCACCAAATCCAATGAATTGTTTGTTGGAAGATTGGCTCAATTGGGTTTTGTTTTCTCTTTGATTGGAGAAATTATTACTGGTAAGGGAGCTCTAGCTCAGCTCAACATTGAGACTGGGGTCCCAATTACTGAAATTGAACCACTAGTGTTGTTCAATGTTATTTTCTTCTTCATTGCTGCTTTGAATCCTGGAACTGGCACTTTTGTAACAGATGAAGAAGAAGATTAG

Protein sequence

>Msa0469840

MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPRFSDVSFNPLPSNSKCFSSRTFTTLALFKSKTKAPAKVVKKPKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASILGEALTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVDDEPNTGGVIPPGKGFRSALGLREGGPLFGFTKSNELFVGRLAQLGFVFSLIGEIITGKGALAQLNIETGVPITEIEPLVLFNVIFFFIAALNPGTGTFVTDEEED*