AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0269660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269660 MtrunA17_Chr2g0285791 96.000 325 9 1 1 321 1 325 0.0 637
Msa0269660 MtrunA17_Chr6g0453121 48.085 235 110 4 82 314 126 350 5.00e-60 198
Msa0269660 MtrunA17_Chr6g0450671 42.321 293 141 9 27 314 54 323 4.03e-59 196
Msa0269660 MtrunA17_Chr7g0272621 36.517 178 103 5 129 305 147 315 3.36e-22 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269660 AT4G18370.1 73.305 236 59 2 86 321 92 323 1.46e-124 360
Msa0269660 AT4G18370.2 71.751 177 46 2 86 262 92 264 6.43e-87 262
Msa0269660 AT4G18370.3 70.270 148 40 2 86 233 92 235 6.30e-70 218
Msa0269660 AT5G39830.1 46.835 237 108 5 82 313 116 339 2.79e-59 197
Msa0269660 AT3G27925.1 46.444 239 106 6 77 314 113 330 1.78e-57 192
Msa0269660 AT3G27925.2 46.444 239 106 6 77 314 113 330 1.78e-57 192
Msa0269660 AT5G39830.2 43.038 237 103 5 82 313 116 325 2.68e-51 175
Msa0269660 AT5G27660.2 37.288 177 99 6 129 303 149 315 2.30e-19 88.6
Msa0269660 AT5G27660.1 37.288 177 99 6 129 303 144 310 2.75e-19 88.2

Find 92 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCTTGTGCATTTGTTTC+AGG 0.129362 2_3:-635584 Msa0269660:intron
AGTCAATTCAATGTCTTTAA+TGG 0.134990 2_3:+634527 None:intergenic
TCCAGGGAAGGGAAAATAAT+TGG 0.154649 2_3:-633668 Msa0269660:CDS
GAAATAAAGCCTGTTGTTAT+TGG 0.182109 2_3:-631685 Msa0269660:CDS
GGCTTCATTTGGGATAAATT+TGG 0.201587 2_3:-634429 Msa0269660:CDS
CAAGTCTTGTAGTTGCTTCT+TGG 0.214119 2_3:-635687 Msa0269660:CDS
TTTCAGATTCTAATTGCTTA+TGG 0.218025 2_3:+635868 None:intergenic
CTTTGATAGCCCCTCCATTT+GGG 0.261671 2_3:+631294 None:intergenic
TTTAGCTACAACATGGTAAT+TGG 0.266241 2_3:+633849 None:intergenic
GACTTCATTAGAAGAGGTTT+TGG 0.274618 2_3:+634497 None:intergenic
TTTCAAAACCTATTAGTATA+AGG 0.279957 2_3:+629950 None:intergenic
CCTTTGATAGCCCCTCCATT+TGG 0.294286 2_3:+631293 None:intergenic
ATGCAGGTGGTCAGTGGTTT+AGG 0.298156 2_3:-631332 Msa0269660:intron
GTACCATCCCTTATTGTATA+TGG 0.304932 2_3:-629977 Msa0269660:CDS
TTTGCCATTGGGAATCCTTA+TGG 0.306916 2_3:-631628 Msa0269660:CDS
ATGGAACACCTTATACTAAT+AGG 0.308611 2_3:-629958 Msa0269660:CDS
GAGAGGGAAAGAGGTTCATT+TGG 0.325824 2_3:+635794 None:intergenic
GCACTGGTTCAGGCTTCATT+TGG 0.338673 2_3:-634440 Msa0269660:CDS
AAAGTGGAAGGCACTGGTTC+AGG 0.378478 2_3:-634450 Msa0269660:CDS
CACTGGTTCAGGCTTCATTT+GGG 0.391449 2_3:-634439 Msa0269660:CDS
CCAGGGAAGGGAAAATAATT+GGG 0.392744 2_3:-633667 Msa0269660:CDS
GACAGAGTTGCTTTGCCATT+GGG 0.398813 2_3:-631639 Msa0269660:CDS
GACTCTCATGGCCATGTTGT+TGG 0.403469 2_3:-630326 Msa0269660:CDS
TATTTGCAGGTTGATGTTGA+TGG 0.405637 2_3:-631712 Msa0269660:intron
AAGGTGTTCCATATACAATA+AGG 0.408680 2_3:+629969 None:intergenic
TAGTGGTTTACAACGTTGTA+AGG 0.411713 2_3:-633812 Msa0269660:intron
CGGATGTTAACAGGAAATTC+AGG 0.411871 2_3:-630362 Msa0269660:intron
TATGAGAATACTCTCACAAC+AGG 0.425005 2_3:-631604 Msa0269660:CDS
AGAGAAAACATTGTGATGAT+TGG 0.430574 2_3:+635817 None:intergenic
AAGACTTGAACTGAAGACTA+TGG 0.430823 2_3:+635702 None:intergenic
TTAGATTCACCAATAACAAC+AGG 0.438438 2_3:+631676 None:intergenic
AGAATATGAGAGAACAGAAA+AGG 0.442429 2_3:-635910 Msa0269660:five_prime_UTR
GTTGTGTTGAATTGAAATTA+AGG 0.445017 2_3:+635656 None:intergenic
GGTGGGAAGGGTCTTTGTTG+AGG 0.458920 2_3:+635753 None:intergenic
TCAGGTACCGGAGCTTCATC+AGG 0.470733 2_3:-630040 Msa0269660:intron
AGGTGTTCCATATACAATAA+GGG 0.471453 2_3:+629970 None:intergenic
ATTACCTTTCCTTGTGAAGG+TGG 0.475479 2_3:+630292 None:intergenic
CCTGGAAAAGTTATTCCCAT+TGG 0.481148 2_3:+633685 None:intergenic
CGCGAGATACCTTCCCCAAA+TGG 0.481655 2_3:-631308 Msa0269660:CDS
TGAGGATGAAGATGCAAAAG+TGG 0.487615 2_3:-634466 Msa0269660:CDS
TATATTACCTTTCCTTGTGA+AGG 0.491019 2_3:+630289 None:intergenic
AGTAGCTGTAACAGTGGTGG+TGG 0.505438 2_3:+635735 None:intergenic
TGTAACAGTGGTGGTGGGAA+GGG 0.505477 2_3:+635741 None:intergenic
ATGAGTAGTTAGCGTTGGAG+AGG 0.508532 2_3:+635777 None:intergenic
TTAGCGTTGGAGAGGGAAAG+AGG 0.508546 2_3:+635785 None:intergenic
CTGTAACAGTGGTGGTGGGA+AGG 0.510652 2_3:+635740 None:intergenic
GGACAGAGTTGCTTTGCCAT+TGG 0.512294 2_3:-631640 Msa0269660:CDS
TATTCCCATTGGCATCAACT+AGG 0.514434 2_3:+633696 None:intergenic
TAGCATGACTTCATTAGAAG+AGG 0.522603 2_3:+634491 None:intergenic
AGAGTATTCTCATATCCATA+AGG 0.524491 2_3:+631613 None:intergenic
GAGGAATGAGTAGTTAGCGT+TGG 0.524538 2_3:+635772 None:intergenic
CTGAAAGAGAAAGTGTTGTA+TGG 0.530063 2_3:-635851 Msa0269660:exon
AGTTGTTGTGAAAGTGAAAG+TGG 0.535180 2_3:+635634 None:intergenic
GTTAACTCCTGATGAAGCTC+CGG 0.541628 2_3:+630033 None:intergenic
ACTGATGCAGCTATTAATGC+AGG 0.543845 2_3:-631260 Msa0269660:intron
ACTTCTAATTACAGAGTCGA+TGG 0.545161 2_3:+630000 None:intergenic
TGAGTAGTTAGCGTTGGAGA+GGG 0.552406 2_3:+635778 None:intergenic
ATGAGAGAACAGAAAAGGAA+TGG 0.563912 2_3:-635905 Msa0269660:five_prime_UTR
GGACCATTGATTGACTCTCA+TGG 0.566441 2_3:-630338 Msa0269660:CDS
TTTGATAGCCCCTCCATTTG+GGG 0.566803 2_3:+631295 None:intergenic
TGGCCATGAGAGTCAATCAA+TGG 0.568108 2_3:+630335 None:intergenic
ATATGATCTAGCTGTTCTGA+AGG 0.569824 2_3:-633633 Msa0269660:intron
AGAACAGCTAGATCATATGA+TGG 0.573622 2_3:+633638 None:intergenic
CCAAATGGAGGGGCTATCAA+AGG 0.574726 2_3:-631293 Msa0269660:CDS
AGATACCTTCCCCAAATGGA+GGG 0.575115 2_3:-631304 Msa0269660:CDS
ATAGCCCCTCCATTTGGGGA+AGG 0.577157 2_3:+631299 None:intergenic
GATGCAAAAGTGGAAGGCAC+TGG 0.579458 2_3:-634456 Msa0269660:CDS
GAATCTAAGAATTTACATGT+TGG 0.582777 2_3:-631661 Msa0269660:CDS
ACGTTGTAAACCACTAGTAT+CGG 0.589338 2_3:+633819 None:intergenic
GAGATACCTTCCCCAAATGG+AGG 0.591441 2_3:-631305 Msa0269660:CDS
TAAATTATGCAGGTGGTCAG+TGG 0.593859 2_3:-631338 Msa0269660:intron
ACAGCCACCTTCACAAGGAA+AGG 0.596510 2_3:-630296 Msa0269660:intron
GATGAAGATGCAAAAGTGGA+AGG 0.620131 2_3:-634462 Msa0269660:CDS
CTGTGTTTACTCCAACAACA+TGG 0.626621 2_3:+630315 None:intergenic
CTTCTAATTACAGAGTCGAT+GGG 0.626746 2_3:+630001 None:intergenic
TAATGAAGTCATGCTAGATG+AGG 0.628611 2_3:-634484 Msa0269660:CDS
CTTAGTAGCTGTAACAGTGG+TGG 0.631185 2_3:+635732 None:intergenic
TCTTTAATGGAAACAACAGA+TGG 0.633125 2_3:+634540 None:intergenic
GTTCCATATACAATAAGGGA+TGG 0.636651 2_3:+629974 None:intergenic
TAAACACAGCCACCTTCACA+AGG 0.639628 2_3:-630301 Msa0269660:CDS
ATGAGAATACTCTCACAACA+GGG 0.643517 2_3:-631603 Msa0269660:CDS
GATACCTTCCCCAAATGGAG+GGG 0.644193 2_3:-631303 Msa0269660:CDS
GTAGCTGTAACAGTGGTGGT+GGG 0.650253 2_3:+635736 None:intergenic
TCGCTTAGTAGCTGTAACAG+TGG 0.652682 2_3:+635729 None:intergenic
TAGCTAGTTTAGCTACAACA+TGG 0.693427 2_3:+633842 None:intergenic
ATATCCATAAGGATTCCCAA+TGG 0.696972 2_3:+631624 None:intergenic
AAACTAGCTACCGATACTAG+TGG 0.701856 2_3:-633829 Msa0269660:CDS
AAACCTGAAACAAATGCACA+AGG 0.703790 2_3:+635581 None:intergenic
ATGTTAACAGGAAATTCAGG+CGG 0.717135 2_3:-630359 Msa0269660:intron
TGAGAATACTCTCACAACAG+GGG 0.741501 2_3:-631602 Msa0269660:intron
CCTGAAACAAATGCACAAGG+TGG 0.756569 2_3:+635584 None:intergenic
CATTTGGGGAAGGTATCTCG+CGG 0.758593 2_3:+631309 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CGTATTTTTTTTTTAAATAA+TGG + chr2_3:631440-631459 None:intergenic 10.0%
!! ATTATAAAAAATAGTGAAAG+GGG + chr2_3:630212-630231 None:intergenic 15.0%
!! CATTATAAAAAATAGTGAAA+GGG + chr2_3:630213-630232 None:intergenic 15.0%
!! ACATTATAAAAAATAGTGAA+AGG + chr2_3:630214-630233 None:intergenic 15.0%
!!! TATTTTTTATAATGTAGTGT+TGG - chr2_3:630219-630238 Msa0269660:intron 15.0%
!!! ATTTTTTATAATGTAGTGTT+GGG - chr2_3:630220-630239 Msa0269660:intron 15.0%
!!! TTTAATCAAATTTTGCAATT+GGG - chr2_3:630292-630311 Msa0269660:intron 15.0%
!!! TTCTTGAACTAATTTTTTTT+GGG - chr2_3:630350-630369 Msa0269660:CDS 15.0%
!!! TATTATATTTCTAAAGTTCA+TGG - chr2_3:630605-630624 Msa0269660:intron 15.0%
!! AAAAATAATAATCATATGTC+AGG + chr2_3:633779-633798 None:intergenic 15.0%
!! CAATAGTTAGTTATAAAAAT+TGG + chr2_3:633846-633865 None:intergenic 15.0%
!!! TTTTCTTAATATGTGTAAAA+TGG + chr2_3:634646-634665 None:intergenic 15.0%
!! ATTAGTAGATAAGTATAAAA+TGG - chr2_3:634866-634885 Msa0269660:intron 15.0%
!!! TTTTTTTTCAAATGTGATAT+AGG - chr2_3:635208-635227 Msa0269660:intron 15.0%
!!! TTTTTTTCAAATGTGATATA+GGG - chr2_3:635209-635228 Msa0269660:intron 15.0%
!!! GTTTAATCAAATTTTGCAAT+TGG - chr2_3:630291-630310 Msa0269660:intron 20.0%
!!! GTTCTTGAACTAATTTTTTT+TGG - chr2_3:630349-630368 Msa0269660:CDS 20.0%
!! ACAAAAACAAACCATTAATT+TGG + chr2_3:630663-630682 None:intergenic 20.0%
!!! ATTTTCATTCTTTTGATATG+TGG - chr2_3:630701-630720 Msa0269660:intron 20.0%
!! TTAAATGTAATCATATGTGT+CGG - chr2_3:630879-630898 Msa0269660:intron 20.0%
!!! ATCTAAAATAAGAAGTTTGA+TGG + chr2_3:631984-632003 None:intergenic 20.0%
!!! ATCAAACTTCTTATTTTAGA+TGG - chr2_3:631983-632002 Msa0269660:intron 20.0%
!! ATTAATGAATAGAAAAGAAG+AGG + chr2_3:632157-632176 None:intergenic 20.0%
!! AAAATGACTTTCACATATTT+GGG + chr2_3:632278-632297 None:intergenic 20.0%
!!! TCCTTTTTTTTGTTTTGTTT+TGG - chr2_3:632864-632883 Msa0269660:intron 20.0%
!! ACCAAAACAAAACAAAAAAA+AGG + chr2_3:632868-632887 None:intergenic 20.0%
!! TTAGATATGATATCATAATC+CGG - chr2_3:633398-633417 Msa0269660:intron 20.0%
!! AAATTGGATGAAATAATTAG+TGG - chr2_3:633694-633713 Msa0269660:CDS 20.0%
!! TGTAACTAACTATTGATATA+TGG - chr2_3:633913-633932 Msa0269660:intron 20.0%
!!! TTCCTTAATTTTAATCCATA+GGG + chr2_3:634582-634601 None:intergenic 20.0%
!!! TTTCCTTAATTTTAATCCAT+AGG + chr2_3:634583-634602 None:intergenic 20.0%
!! GATTAAAAAAAGAAAGAGAA+TGG - chr2_3:634669-634688 Msa0269660:intron 20.0%
!! CGATAATGAAAATACATAAA+TGG + chr2_3:634721-634740 None:intergenic 20.0%
!!! TTTTCTCAATTAAGTTTAGA+AGG - chr2_3:634918-634937 Msa0269660:intron 20.0%
!! TTTCTCAATTAAGTTTAGAA+GGG - chr2_3:634919-634938 Msa0269660:intron 20.0%
!! GAACTCTCTAATTAATATTA+TGG + chr2_3:635126-635145 None:intergenic 20.0%
!! TTTCAAAACCTATTAGTATA+AGG + chr2_3:635802-635821 None:intergenic 20.0%
!!! TTTCAGTTTTAGAATAAACA+TGG + chr2_3:635913-635932 None:intergenic 20.0%
! TTTCAGATTCTAATTGCTTA+TGG + chr2_3:629884-629903 None:intergenic 25.0%
! GTTGTGTTGAATTGAAATTA+AGG + chr2_3:630096-630115 None:intergenic 25.0%
! TAGTTCATGAACTAAATTGA+CGG - chr2_3:630558-630577 Msa0269660:intron 25.0%
! ATTAAGCATTTGATTATCAC+AGG - chr2_3:631178-631197 Msa0269660:intron 25.0%
! AGTCAATTCAATGTCTTTAA+TGG + chr2_3:631225-631244 None:intergenic 25.0%
!!! TTGTTTTTCATCTTACTATG+TGG + chr2_3:631346-631365 None:intergenic 25.0%
! ACAAGCAGAATCAAATTAAA+GGG + chr2_3:631396-631415 None:intergenic 25.0%
! AACAAGCAGAATCAAATTAA+AGG + chr2_3:631397-631416 None:intergenic 25.0%
! ATAAGATAATTGCTCTACTA+TGG + chr2_3:631631-631650 None:intergenic 25.0%
! GAAAAACTGTTTGAAAACAT+TGG - chr2_3:631714-631733 Msa0269660:intron 25.0%
! ATAATTTGACAAACTATCTC+AGG - chr2_3:631769-631788 Msa0269660:intron 25.0%
! AAAGACTATATCTATGTCAT+GGG + chr2_3:631808-631827 None:intergenic 25.0%
! TAAAGACTATATCTATGTCA+TGG + chr2_3:631809-631828 None:intergenic 25.0%
! ACCTTGAAAGTTTGAAAAAA+TGG + chr2_3:631845-631864 None:intergenic 25.0%
!!! GTCATTTGTTTTTTTTCTTC+TGG - chr2_3:631866-631885 Msa0269660:intron 25.0%
! GGAAGAAACATATGTAATAT+TGG - chr2_3:632004-632023 Msa0269660:intron 25.0%
! AACAGAGAAATCAAAATGTT+CGG + chr2_3:632186-632205 None:intergenic 25.0%
! GAAAATGACTTTCACATATT+TGG + chr2_3:632279-632298 None:intergenic 25.0%
! TGATATTATGCAACAAACTA+TGG - chr2_3:632354-632373 Msa0269660:intron 25.0%
! TACAAAGCTGATAAAAAAAG+TGG + chr2_3:632527-632546 None:intergenic 25.0%
!! TTCTTTTGGCATTTGATAAA+TGG - chr2_3:632560-632579 Msa0269660:intron 25.0%
! CTCAAAATAATTCAAGAATC+AGG + chr2_3:632586-632605 None:intergenic 25.0%
!!! CTGATTCTTGAATTATTTTG+AGG - chr2_3:632584-632603 Msa0269660:intron 25.0%
! TGTATCATTTGATTCACAAT+AGG - chr2_3:632679-632698 Msa0269660:intron 25.0%
! CAATTCACAATTCAGAAAAT+AGG - chr2_3:632707-632726 Msa0269660:intron 25.0%
! TGTATCATTTGATTCACAAT+AGG - chr2_3:632679-632698 Msa0269660:intron 25.0%
! CAATTCACAATTCAGAAAAT+AGG - chr2_3:632707-632726 Msa0269660:intron 25.0%
! TTTATATTCAAGTCGTGAAT+CGG + chr2_3:632816-632835 None:intergenic 25.0%
! TAGAACCTTACACTAATATT+GGG + chr2_3:632916-632935 None:intergenic 25.0%
! TTAGAACCTTACACTAATAT+TGG + chr2_3:632917-632936 None:intergenic 25.0%
! ATAAAGAAACCAACTTACTA+GGG + chr2_3:632978-632997 None:intergenic 25.0%
! GTCTTATCATATTAAGTGTT+TGG - chr2_3:633070-633089 Msa0269660:intron 25.0%
! TACATCTTATTCTTCATTCT+TGG + chr2_3:633332-633351 None:intergenic 25.0%
! ATAAGATGAAGAATACAGAA+TGG + chr2_3:633429-633448 None:intergenic 25.0%
! GACTTATTTGTAAAGAAGTT+AGG - chr2_3:633574-633593 Msa0269660:intron 25.0%
! ATAATTAGTGGCATGATAAT+AGG - chr2_3:633706-633725 Msa0269660:intron 25.0%
! TAATTAGTGGCATGATAATA+GGG - chr2_3:633707-633726 Msa0269660:intron 25.0%
!!! CAAAGTATTTTTACAGCTAA+GGG + chr2_3:633955-633974 None:intergenic 25.0%
!!! ACAAAGTATTTTTACAGCTA+AGG + chr2_3:633956-633975 None:intergenic 25.0%
! AAAGTAAGATTCACAAAAGT+AGG + chr2_3:633995-634014 None:intergenic 25.0%
! GAATCTAAGAATTTACATGT+TGG - chr2_3:634088-634107 Msa0269660:intron 25.0%
! ATCCTTCATCTATAACTATT+TGG + chr2_3:634258-634277 None:intergenic 25.0%
! ACATAAAGAACCACAAATAA+GGG + chr2_3:634524-634543 None:intergenic 25.0%
! AACATAAAGAACCACAAATA+AGG + chr2_3:634525-634544 None:intergenic 25.0%
!!! TATTGTTTTTCACTTTGCAT+TGG + chr2_3:634744-634763 None:intergenic 25.0%
! AATGCAAAGTGAAAAACAAT+AGG - chr2_3:634743-634762 Msa0269660:intron 25.0%
! AAAGTGAAAAACAATAGGTT+AGG - chr2_3:634748-634767 Msa0269660:intron 25.0%
! AAGTGAAAAACAATAGGTTA+GGG - chr2_3:634749-634768 Msa0269660:intron 25.0%
! ATAAGCTCATATGACAAAAA+AGG + chr2_3:635053-635072 None:intergenic 25.0%
! TCTGCTATAAACTAGAAAAT+TGG - chr2_3:635085-635104 Msa0269660:intron 25.0%
!! ATTAATATTATGGCTCTGTT+TGG + chr2_3:635116-635135 None:intergenic 25.0%
! TATTAATTAGAGAGTTCGAT+TGG - chr2_3:635129-635148 Msa0269660:intron 25.0%
!! TACTGAAATCTAAAACAAGA+TGG + chr2_3:635307-635326 None:intergenic 25.0%
! TACACGATAAAATACAATGA+AGG + chr2_3:635491-635510 None:intergenic 25.0%
! ATGAAGTATAAATATGGGAA+AGG + chr2_3:635532-635551 None:intergenic 25.0%
! CGCAAATGAAGTATAAATAT+GGG + chr2_3:635537-635556 None:intergenic 25.0%
! ACGCAAATGAAGTATAAATA+TGG + chr2_3:635538-635557 None:intergenic 25.0%
!!! ATTTCTAGACTTCAATTTTG+TGG + chr2_3:635625-635644 None:intergenic 25.0%
!! TTTTGCTTTCAATCTAATTC+AGG - chr2_3:635691-635710 Msa0269660:CDS 25.0%
!!! CATGTAATCAACTTTTTTTG+TGG - chr2_3:635825-635844 Msa0269660:CDS 25.0%
AGAATATGAGAGAACAGAAA+AGG - chr2_3:629839-629858 Msa0269660:three_prime_UTR 30.0%
AGAGAAAACATTGTGATGAT+TGG + chr2_3:629935-629954 None:intergenic 30.0%
! GGGTCATGAACTTTAAAAAT+AGG - chr2_3:630312-630331 Msa0269660:CDS 30.0%
!! TGACGGATTGAAAATAGTTT+AGG - chr2_3:630575-630594 Msa0269660:intron 30.0%
!! GACGGATTGAAAATAGTTTA+GGG - chr2_3:630576-630595 Msa0269660:intron 30.0%
TAGGTTAGAGACCAAATTAA+TGG - chr2_3:630649-630668 Msa0269660:intron 30.0%
!! AAGTGTTACTTCAACACATT+TGG + chr2_3:630727-630746 None:intergenic 30.0%
! TGAAGTAACACTTTTGATGT+TGG - chr2_3:630734-630753 Msa0269660:intron 30.0%
! GAAGTAACACTTTTGATGTT+GGG - chr2_3:630735-630754 Msa0269660:intron 30.0%
! AAGTAACACTTTTGATGTTG+GGG - chr2_3:630736-630755 Msa0269660:intron 30.0%
AATGAAGCACAGATACTATT+CGG + chr2_3:630950-630969 None:intergenic 30.0%
! AAGTTTAAAACCAATGCATG+TGG - chr2_3:631050-631069 Msa0269660:intron 30.0%
TCTTTAATGGAAACAACAGA+TGG + chr2_3:631212-631231 None:intergenic 30.0%
! ACTTCATTAGAAGAGGTTTT+GGG + chr2_3:631254-631273 None:intergenic 30.0%
GATGAAAAACAAATCAGAAG+AGG - chr2_3:631354-631373 Msa0269660:intron 30.0%
CAAGCAGAATCAAATTAAAG+GGG + chr2_3:631395-631414 None:intergenic 30.0%
! AAATACGACGCTTTAGATTA+AGG - chr2_3:631453-631472 Msa0269660:intron 30.0%
TGACACTAATATCTAGATAC+TGG + chr2_3:631573-631592 None:intergenic 30.0%
TTGCTTTCAAGATGTTGTAA+TGG - chr2_3:631662-631681 Msa0269660:CDS 30.0%
ACTGTGAATACCTAAATGTA+AGG - chr2_3:631737-631756 Msa0269660:intron 30.0%
!!! GCCATTTTTTCAAACTTTCA+AGG - chr2_3:631841-631860 Msa0269660:intron 30.0%
TTTAGCTACAACATGGTAAT+TGG + chr2_3:631903-631922 None:intergenic 30.0%
GAGTTTATACTTCTATCTGT+AGG - chr2_3:632026-632045 Msa0269660:intron 30.0%
TGAATAGAAAAGAAGAGGAT+TGG + chr2_3:632152-632171 None:intergenic 30.0%
ACAGAGAAATCAAAATGTTC+GGG + chr2_3:632185-632204 None:intergenic 30.0%
ATAGATACACGCTAACATTT+GGG + chr2_3:632435-632454 None:intergenic 30.0%
AATAGATACACGCTAACATT+TGG + chr2_3:632436-632455 None:intergenic 30.0%
GTGATTCGTTACAATGAATT+AGG + chr2_3:632482-632501 None:intergenic 30.0%
!! ATAACCAACCACTTTTCTTT+TGG - chr2_3:632546-632565 Msa0269660:intron 30.0%
ATCAAATGCCAAAAGAAAAG+TGG + chr2_3:632557-632576 None:intergenic 30.0%
ACACTAATATTGGGAATCAA+AGG + chr2_3:632907-632926 None:intergenic 30.0%
TGATTCCCAATATTAGTGTA+AGG - chr2_3:632908-632927 Msa0269660:intron 30.0%
CATAAAGAAACCAACTTACT+AGG + chr2_3:632979-632998 None:intergenic 30.0%
!! CTAGTAAGTTGGTTTCTTTA+TGG - chr2_3:632977-632996 Msa0269660:intron 30.0%
!!! ACAGACAGTTTTTTCTTACT+GGG + chr2_3:633052-633071 None:intergenic 30.0%
! TCTAAGACCTCAGATAATTT+AGG - chr2_3:633127-633146 Msa0269660:intron 30.0%
TTCTCCTCGTCATATTAAAA+GGG + chr2_3:633252-633271 None:intergenic 30.0%
TCTTATTCTTCATTCTTGGA+CGG + chr2_3:633328-633347 None:intergenic 30.0%
TGAAGAATAAGATGTAACAC+CGG - chr2_3:633336-633355 Msa0269660:intron 30.0%
ATCAGCTAATATGGAATATC+CGG + chr2_3:633358-633377 None:intergenic 30.0%
TTGTAATACATGTTGTCAGT+TGG + chr2_3:633549-633568 None:intergenic 30.0%
!! ATGGTCAACAATTCTGAAAT+TGG - chr2_3:633678-633697 Msa0269660:CDS 30.0%
ATGACATTTGATCTATTTGC+AGG - chr2_3:634024-634043 Msa0269660:intron 30.0%
GAAATAAAGCCTGTTGTTAT+TGG - chr2_3:634064-634083 Msa0269660:intron 30.0%
TTAGATTCACCAATAACAAC+AGG + chr2_3:634076-634095 None:intergenic 30.0%
! AGAGTATTCTCATATCCATA+AGG + chr2_3:634139-634158 None:intergenic 30.0%
!! TTGTTAAGTTGAATCCAACA+TGG - chr2_3:634179-634198 Msa0269660:intron 30.0%
CTAATGAAAGTTTACCATGT+TGG + chr2_3:634196-634215 None:intergenic 30.0%
TGCCAAATAGTTATAGATGA+AGG - chr2_3:634253-634272 Msa0269660:intron 30.0%
TCAGATAAAACAAAATCGCT+TGG - chr2_3:634345-634364 Msa0269660:intron 30.0%
TTATGCGATGTAAATTATGC+AGG - chr2_3:634401-634420 Msa0269660:intron 30.0%
! TGCCCTATGGATTAAAATTA+AGG - chr2_3:634577-634596 Msa0269660:intron 30.0%
AGTGAAAAACAATAGGTTAG+GGG - chr2_3:634750-634769 Msa0269660:intron 30.0%
!! GAAAGCGTTGTTAAAATTAG+TGG - chr2_3:634839-634858 Msa0269660:intron 30.0%
! ATGACAAAAAAGGACTTGTT+TGG + chr2_3:635043-635062 None:intergenic 30.0%
ATGTGATATAGGGAGTAATT+TGG - chr2_3:635219-635238 Msa0269660:intron 30.0%
AAACTGTACAATGTAACCAA+CGG - chr2_3:635244-635263 Msa0269660:intron 30.0%
TATATTACCTTTCCTTGTGA+AGG + chr2_3:635463-635482 None:intergenic 30.0%
TGAAAGCAAAACATTCTTGA+AGG + chr2_3:635682-635701 None:intergenic 30.0%
TTTCAATCTAATTCAGGTAC+CGG - chr2_3:635697-635716 Msa0269660:CDS 30.0%
AGGTGTTCCATATACAATAA+GGG + chr2_3:635782-635801 None:intergenic 30.0%
! AAGGTGTTCCATATACAATA+AGG + chr2_3:635783-635802 None:intergenic 30.0%
ATGGAACACCTTATACTAAT+AGG - chr2_3:635791-635810 Msa0269660:CDS 30.0%
ATGAGAGAACAGAAAAGGAA+TGG - chr2_3:629844-629863 Msa0269660:three_prime_UTR 35.0%
!! CTGAAAGAGAAAGTGTTGTA+TGG - chr2_3:629898-629917 Msa0269660:three_prime_UTR 35.0%
AAGACTTGAACTGAAGACTA+TGG + chr2_3:630050-630069 None:intergenic 35.0%
AGTTGTTGTGAAAGTGAAAG+TGG + chr2_3:630118-630137 None:intergenic 35.0%
AAACCTGAAACAAATGCACA+AGG + chr2_3:630171-630190 None:intergenic 35.0%
ATTGGTACCCAAAATTAGCT+GGG + chr2_3:630379-630398 None:intergenic 35.0%
TGTTTGTTCTCGCTTCAATT+AGG + chr2_3:630420-630439 None:intergenic 35.0%
TGACCCAATACAAGAATTGT+TGG - chr2_3:630452-630471 Msa0269660:intron 35.0%
AGTTCATGAACTAAACCCTA+GGG + chr2_3:630551-630570 None:intergenic 35.0%
TAGTTCATGAACTAAACCCT+AGG + chr2_3:630552-630571 None:intergenic 35.0%
CTAAAGTTCATGGACCAAAT+TGG - chr2_3:630615-630634 Msa0269660:intron 35.0%
CTATCATTGTCTCTCCAATT+TGG + chr2_3:630632-630651 None:intergenic 35.0%
CAAATTGGAGAGACAATGAT+AGG - chr2_3:630630-630649 Msa0269660:intron 35.0%
! AGTAACACTTTTGATGTTGG+GGG - chr2_3:630737-630756 Msa0269660:intron 35.0%
ATAGGTCACAACTACAATTG+TGG + chr2_3:630790-630809 None:intergenic 35.0%
TAGTTGTGACCTATGAAACA+CGG - chr2_3:630796-630815 Msa0269660:intron 35.0%
AATGTAATCATATGTGTCGG+TGG - chr2_3:630882-630901 Msa0269660:intron 35.0%
! CACTTTAAAGGACTTTGCAA+CGG + chr2_3:630983-631002 None:intergenic 35.0%
AATCACCATTTCGTATGTGT+TGG + chr2_3:631140-631159 None:intergenic 35.0%
! CTTCATTAGAAGAGGTTTTG+GGG + chr2_3:631253-631272 None:intergenic 35.0%
! GACTTCATTAGAAGAGGTTT+TGG + chr2_3:631255-631274 None:intergenic 35.0%
TAGCATGACTTCATTAGAAG+AGG + chr2_3:631261-631280 None:intergenic 35.0%
TAATGAAGTCATGCTAGATG+AGG - chr2_3:631265-631284 Msa0269660:CDS 35.0%
! GGCTTCATTTGGGATAAATT+TGG - chr2_3:631320-631339 Msa0269660:CDS 35.0%
GTGCTTTCAATTCAATGAAG+TGG - chr2_3:631684-631703 Msa0269660:CDS 35.0%
!!! TTTTTTTTCTTCTGGTGCAC+AGG - chr2_3:631874-631893 Msa0269660:intron 35.0%
! TAGCTAGTTTAGCTACAACA+TGG + chr2_3:631910-631929 None:intergenic 35.0%
ACGTTGTAAACCACTAGTAT+CGG + chr2_3:631933-631952 None:intergenic 35.0%
TAGTGGTTTACAACGTTGTA+AGG - chr2_3:631937-631956 Msa0269660:intron 35.0%
TGATGGAATTATCAGCACAA+GGG + chr2_3:631967-631986 None:intergenic 35.0%
TTGATGGAATTATCAGCACA+AGG + chr2_3:631968-631987 None:intergenic 35.0%
!! TTTTCCTAGTTGATGCCAAT+GGG - chr2_3:632049-632068 Msa0269660:intron 35.0%
! CAATGGGAATAACTTTTCCA+GGG - chr2_3:632065-632084 Msa0269660:intron 35.0%
AGAACAGCTAGATCATATGA+TGG + chr2_3:632114-632133 None:intergenic 35.0%
ATATGATCTAGCTGTTCTGA+AGG - chr2_3:632116-632135 Msa0269660:intron 35.0%
GATTTCTCTGTTATTCCTGT+TGG - chr2_3:632194-632213 Msa0269660:intron 35.0%
AGCATATAGAAGAATCCAAC+AGG + chr2_3:632212-632231 None:intergenic 35.0%
!! TATGGTAATGGATTGGAAAG+TGG + chr2_3:632250-632269 None:intergenic 35.0%
ATTTGGGCATGTTATGGTAA+TGG + chr2_3:632262-632281 None:intergenic 35.0%
TCACATATTTGGGCATGTTA+TGG + chr2_3:632268-632287 None:intergenic 35.0%
AATGCCAAAAGAAAAGTGGT+TGG + chr2_3:632553-632572 None:intergenic 35.0%
! GGAACTAAACATTTGTTGCA+AGG + chr2_3:632847-632866 None:intergenic 35.0%
TCTTTATGGCACAAAAATGC+AGG - chr2_3:632991-633010 Msa0269660:intron 35.0%
AAATGCAGGCATTTGCTTTA+TGG - chr2_3:633005-633024 Msa0269660:intron 35.0%
! TTTTCTTACTGGGACAGAAT+AGG + chr2_3:633042-633061 None:intergenic 35.0%
!!! GACAGACAGTTTTTTCTTAC+TGG + chr2_3:633053-633072 None:intergenic 35.0%
TTGTGTAGTATTAAGGCAGA+TGG + chr2_3:633096-633115 None:intergenic 35.0%
ATCTGCCTTAATACTACACA+AGG - chr2_3:633095-633114 Msa0269660:intron 35.0%
TTGGTCCTTGTGTAGTATTA+AGG + chr2_3:633103-633122 None:intergenic 35.0%
! ATCTGAGGTCTTAGAATACT+TGG + chr2_3:633122-633141 None:intergenic 35.0%
AAGACCTCAGATAATTTAGG+AGG - chr2_3:633130-633149 Msa0269660:intron 35.0%
GTTTCCTCCTAAATTATCTG+AGG + chr2_3:633137-633156 None:intergenic 35.0%
!! GTTTAGAGTTCCTCTTTTCA+AGG - chr2_3:633207-633226 Msa0269660:intron 35.0%
CTTCTCCTCGTCATATTAAA+AGG + chr2_3:633253-633272 None:intergenic 35.0%
TTTAATATGACGAGGAGAAG+AGG - chr2_3:633253-633272 Msa0269660:intron 35.0%
TTAATATGACGAGGAGAAGA+GGG - chr2_3:633254-633273 Msa0269660:intron 35.0%
TACAGTTGCATCAGCTAATA+TGG + chr2_3:633367-633386 None:intergenic 35.0%
ACCATTACTTACAATACTCC+TGG - chr2_3:633470-633489 Msa0269660:intron 35.0%
!! ACCAGGAGTATTGTAAGTAA+TGG + chr2_3:633474-633493 None:intergenic 35.0%
AATACATGTTGTCAGTTGGA+AGG + chr2_3:633545-633564 None:intergenic 35.0%
AGCAAGTTCACAACATTGAA+AGG + chr2_3:633618-633637 None:intergenic 35.0%
CCATTTATGCTTACTGTGAA+AGG + chr2_3:633642-633661 None:intergenic 35.0%
CCTTTCACAGTAAGCATAAA+TGG - chr2_3:633639-633658 Msa0269660:CDS 35.0%
TCACAGTAAGCATAAATGGA+AGG - chr2_3:633643-633662 Msa0269660:CDS 35.0%
CACAGTAAGCATAAATGGAA+GGG - chr2_3:633644-633663 Msa0269660:CDS 35.0%
AGTTAGTTAGACAGGTTAGA+AGG + chr2_3:633817-633836 None:intergenic 35.0%
! GGTTAGTTAGTTAGTTAGAC+AGG + chr2_3:633825-633844 None:intergenic 35.0%
GTAAGATTCACAAAAGTAGG+CGG + chr2_3:633992-634011 None:intergenic 35.0%
!! TATTTGCAGGTTGATGTTGA+TGG - chr2_3:634037-634056 Msa0269660:intron 35.0%
ATATCCATAAGGATTCCCAA+TGG + chr2_3:634128-634147 None:intergenic 35.0%
TATGAGAATACTCTCACAAC+AGG - chr2_3:634145-634164 Msa0269660:intron 35.0%
ATGAGAATACTCTCACAACA+GGG - chr2_3:634146-634165 Msa0269660:intron 35.0%
AGATGAAGGATGAAAATCTG+TGG - chr2_3:634267-634286 Msa0269660:intron 35.0%
! GTAAGCTATACCCTTATTTG+TGG - chr2_3:634511-634530 Msa0269660:CDS 35.0%
TCAAATGCGACGATTATTGT+GGG + chr2_3:634623-634642 None:intergenic 35.0%
! CTTTGTTTGGTAAAAGGTAG+CGG - chr2_3:634786-634805 Msa0269660:intron 35.0%
!! AGAATTCTAAGAAGCATTGG+GGG + chr2_3:635284-635303 None:intergenic 35.0%
!! GAGAATTCTAAGAAGCATTG+GGG + chr2_3:635285-635304 None:intergenic 35.0%
!! GGAGAATTCTAAGAAGCATT+GGG + chr2_3:635286-635305 None:intergenic 35.0%
! TGGAGAATTCTAAGAAGCAT+TGG + chr2_3:635287-635306 None:intergenic 35.0%
CTATGATCAGAAGTAAAGGA+TGG + chr2_3:635334-635353 None:intergenic 35.0%
CATCCTTTACTTCTGATCAT+AGG - chr2_3:635332-635351 Msa0269660:intron 35.0%
AGTCCTATGATCAGAAGTAA+AGG + chr2_3:635338-635357 None:intergenic 35.0%
ATGTTAACAGGAAATTCAGG+CGG - chr2_3:635390-635409 Msa0269660:intron 35.0%
CTTCTAATTACAGAGTCGAT+GGG + chr2_3:635751-635770 None:intergenic 35.0%
ACTTCTAATTACAGAGTCGA+TGG + chr2_3:635752-635771 None:intergenic 35.0%
GTACCATCCCTTATTGTATA+TGG - chr2_3:635772-635791 Msa0269660:CDS 35.0%
GTTCCATATACAATAAGGGA+TGG + chr2_3:635778-635797 None:intergenic 35.0%
! CAAGTCTTGTAGTTGCTTCT+TGG - chr2_3:630062-630081 Msa0269660:intron 40.0%
! TTGGGAAACCCAGCTAATTT+TGG - chr2_3:630368-630387 Msa0269660:intron 40.0%
! TGGGAAACCCAGCTAATTTT+GGG - chr2_3:630369-630388 Msa0269660:intron 40.0%
GATTGGTACCCAAAATTAGC+TGG + chr2_3:630380-630399 None:intergenic 40.0%
TCAATTAGGCCTCTAGTTGA+TGG + chr2_3:630406-630425 None:intergenic 40.0%
GCGCCAACAATTCTTGTATT+GGG + chr2_3:630458-630477 None:intergenic 40.0%
TGCGCCAACAATTCTTGTAT+TGG + chr2_3:630459-630478 None:intergenic 40.0%
ATACAAGAATTGTTGGCGCA+TGG - chr2_3:630459-630478 Msa0269660:intron 40.0%
TACAAGAATTGTTGGCGCAT+GGG - chr2_3:630460-630479 Msa0269660:intron 40.0%
TGTCGAACATGTGTCAATGT+CGG + chr2_3:630911-630930 None:intergenic 40.0%
ATTGACACATGTTCGACAGT+GGG - chr2_3:630913-630932 Msa0269660:intron 40.0%
GCACAGATACTATTCGGATT+AGG + chr2_3:630944-630963 None:intergenic 40.0%
CAATTGTGGTCGCACTTTAA+AGG + chr2_3:630995-631014 None:intergenic 40.0%
TTGTCAATCTCCACATGCAT+TGG + chr2_3:631063-631082 None:intergenic 40.0%
GTTCTCCAACACATACGAAA+TGG - chr2_3:631132-631151 Msa0269660:intron 40.0%
TGAGGATGAAGATGCAAAAG+TGG - chr2_3:631283-631302 Msa0269660:CDS 40.0%
GATGAAGATGCAAAAGTGGA+AGG - chr2_3:631287-631306 Msa0269660:CDS 40.0%
! ACGACGCTTTAGATTAAGGT+TGG - chr2_3:631457-631476 Msa0269660:intron 40.0%
! GCTTTAGATTAAGGTTGGTC+CGG - chr2_3:631462-631481 Msa0269660:intron 40.0%
CAACGATATGTTTCGAACAC+CGG + chr2_3:631484-631503 None:intergenic 40.0%
TTGAGTGTAACCACATGTGT+CGG + chr2_3:631525-631544 None:intergenic 40.0%
TGCATACGTGCCTTACATTT+AGG + chr2_3:631750-631769 None:intergenic 40.0%
AAACTAGCTACCGATACTAG+TGG - chr2_3:631920-631939 Msa0269660:intron 40.0%
!! GTTTTCCTAGTTGATGCCAA+TGG - chr2_3:632048-632067 Msa0269660:intron 40.0%
TATTCCCATTGGCATCAACT+AGG + chr2_3:632056-632075 None:intergenic 40.0%
CCTGGAAAAGTTATTCCCAT+TGG + chr2_3:632067-632086 None:intergenic 40.0%
! CCAATGGGAATAACTTTTCC+AGG - chr2_3:632064-632083 Msa0269660:intron 40.0%
! GGAATAACTTTTCCAGGGAA+GGG - chr2_3:632070-632089 Msa0269660:intron 40.0%
TCCAGGGAAGGGAAAATAAT+TGG - chr2_3:632081-632100 Msa0269660:intron 40.0%
CCAGGGAAGGGAAAATAATT+GGG - chr2_3:632082-632101 Msa0269660:intron 40.0%
!! GGCATGTTATGGTAATGGAT+TGG + chr2_3:632257-632276 None:intergenic 40.0%
CTATCTACACTTAGTGTAGC+TGG - chr2_3:632501-632520 Msa0269660:intron 40.0%
ATCGAAAGACCCTAGTAAGT+TGG - chr2_3:632966-632985 Msa0269660:intron 40.0%
GATAATTTAGGAGGAAACCC+TGG - chr2_3:633139-633158 Msa0269660:intron 40.0%
TAATATGACGAGGAGAAGAG+GGG - chr2_3:633255-633274 Msa0269660:intron 40.0%
TAGCTGATGCAACTGTACTA+TGG - chr2_3:633370-633389 Msa0269660:intron 40.0%
AGAATACAGAATGGCAGATC+CGG + chr2_3:633420-633439 None:intergenic 40.0%
! TGGAAGGGAACACATTTTCA+TGG - chr2_3:633659-633678 Msa0269660:CDS 40.0%
TTAGACAGGTTAGAAGGACA+GGG + chr2_3:633811-633830 None:intergenic 40.0%
TTTGCCATTGGGAATCCTTA+TGG - chr2_3:634121-634140 Msa0269660:intron 40.0%
TGAGAATACTCTCACAACAG+GGG - chr2_3:634147-634166 Msa0269660:intron 40.0%
AGAGTTCTTAGCAGATTCAG+AGG + chr2_3:634223-634242 None:intergenic 40.0%
TGCGATGTAAATTATGCAGG+TGG - chr2_3:634404-634423 Msa0269660:intron 40.0%
TAAATTATGCAGGTGGTCAG+TGG - chr2_3:634411-634430 Msa0269660:intron 40.0%
ACTGATGCAGCTATTAATGC+AGG - chr2_3:634489-634508 Msa0269660:CDS 40.0%
CCAACAAATGCTTGGTATTG+AGG + chr2_3:634552-634571 None:intergenic 40.0%
CCTCAATACCAAGCATTTGT+TGG - chr2_3:634549-634568 Msa0269660:CDS 40.0%
GACGATTATTGTGGGTCAAA+GGG + chr2_3:634615-634634 None:intergenic 40.0%
GTCAAATGCGACGATTATTG+TGG + chr2_3:634624-634643 None:intergenic 40.0%
!! CGCAAGCTTTGTTTGGTAAA+AGG - chr2_3:634780-634799 Msa0269660:intron 40.0%
!! AAGGTAGCGGATAGTTAACA+AGG - chr2_3:634799-634818 Msa0269660:intron 40.0%
CGGATGTTAACAGGAAATTC+AGG - chr2_3:635387-635406 Msa0269660:intron 40.0%
CTGTGTTTACTCCAACAACA+TGG + chr2_3:635437-635456 None:intergenic 40.0%
ATTACCTTTCCTTGTGAAGG+TGG + chr2_3:635460-635479 None:intergenic 40.0%
GAGAGGGAAAGAGGTTCATT+TGG + chr2_3:629958-629977 None:intergenic 45.0%
! TGAGTAGTTAGCGTTGGAGA+GGG + chr2_3:629974-629993 None:intergenic 45.0%
! ATGAGTAGTTAGCGTTGGAG+AGG + chr2_3:629975-629994 None:intergenic 45.0%
GAGGAATGAGTAGTTAGCGT+TGG + chr2_3:629980-629999 None:intergenic 45.0%
CTTAGTAGCTGTAACAGTGG+TGG + chr2_3:630020-630039 None:intergenic 45.0%
TCGCTTAGTAGCTGTAACAG+TGG + chr2_3:630023-630042 None:intergenic 45.0%
CCTGAAACAAATGCACAAGG+TGG + chr2_3:630168-630187 None:intergenic 45.0%
CCACCTTGTGCATTTGTTTC+AGG - chr2_3:630165-630184 Msa0269660:intron 45.0%
!! CCTCTAGTTGATGGTGAGAT+TGG + chr2_3:630397-630416 None:intergenic 45.0%
CCAATCTCACCATCAACTAG+AGG - chr2_3:630394-630413 Msa0269660:intron 45.0%
! TGCGCTCTTTTCTAGGTCTT+AGG + chr2_3:630495-630514 None:intergenic 45.0%
CATGAACTAAACCCTAGGGT+TGG + chr2_3:630547-630566 None:intergenic 45.0%
TGTCTGTGACCGTGTTTCAT+AGG + chr2_3:630808-630827 None:intergenic 45.0%
ATGAAACACGGTCACAGACA+TGG - chr2_3:630808-630827 Msa0269660:intron 45.0%
GTCACAGACATGGAAAGACA+CGG - chr2_3:630818-630837 Msa0269660:intron 45.0%
CATTGACACATGTTCGACAG+TGG - chr2_3:630912-630931 Msa0269660:intron 45.0%
!! CACTGGTTCAGGCTTCATTT+GGG - chr2_3:631310-631329 Msa0269660:CDS 45.0%
!! GTCGGTGTTGTGTTAATGTC+TGG + chr2_3:631507-631526 None:intergenic 45.0%
TAACACAACACCGACACATG+TGG - chr2_3:631512-631531 Msa0269660:intron 45.0%
! GGGAATAACTTTTCCAGGGA+AGG - chr2_3:632069-632088 Msa0269660:intron 45.0%
! CCCAATTATTTTCCCTTCCC+TGG + chr2_3:632085-632104 None:intergenic 45.0%
CTTACTGGGACAGAATAGGA+GGG + chr2_3:633038-633057 None:intergenic 45.0%
TCTTACTGGGACAGAATAGG+AGG + chr2_3:633039-633058 None:intergenic 45.0%
GACACGACCAAATGAGCTAA+CGG - chr2_3:633181-633200 Msa0269660:intron 45.0%
ACACGACCAAATGAGCTAAC+GGG - chr2_3:633182-633201 Msa0269660:intron 45.0%
ATATTAAAAGGGCCCAGGTG+TGG + chr2_3:633241-633260 None:intergenic 45.0%
TCGTCATATTAAAAGGGCCC+AGG + chr2_3:633246-633265 None:intergenic 45.0%
! TGGGCCCTTTTAATATGACG+AGG - chr2_3:633245-633264 Msa0269660:intron 45.0%
ATTCTTGGACGGAGCAAATG+AGG + chr2_3:633317-633336 None:intergenic 45.0%
CTGATGCAACTGTACTATGG+TGG - chr2_3:633373-633392 Msa0269660:intron 45.0%
! AGCTTCTAGAAGAGTAGACC+AGG + chr2_3:633491-633510 None:intergenic 45.0%
! TGGTCTACTCTTCTAGAAGC+TGG - chr2_3:633490-633509 Msa0269660:intron 45.0%
GTTAGACAGGTTAGAAGGAC+AGG + chr2_3:633812-633831 None:intergenic 45.0%
! GACAGAGTTGCTTTGCCATT+GGG - chr2_3:634110-634129 Msa0269660:intron 45.0%
AGATACCTTCCCCAAATGGA+GGG - chr2_3:634445-634464 Msa0269660:CDS 45.0%
! TTTGATAGCCCCTCCATTTG+GGG + chr2_3:634457-634476 None:intergenic 45.0%
! CTTTGATAGCCCCTCCATTT+GGG + chr2_3:634458-634477 None:intergenic 45.0%
GCAACAAGCCAACAAATGCT+TGG + chr2_3:634560-634579 None:intergenic 45.0%
!! TTTGTTGGCTTGTTGCCCTA+TGG - chr2_3:634564-634583 Msa0269660:intron 45.0%
CGACGATTATTGTGGGTCAA+AGG + chr2_3:634616-634635 None:intergenic 45.0%
GGCAAAAGTAAAGTGACCGT+TGG + chr2_3:635263-635282 None:intergenic 45.0%
TATGATCTTGTGTTCGCGCA+CGG - chr2_3:635367-635386 Msa0269660:intron 45.0%
! GGACCATTGATTGACTCTCA+TGG - chr2_3:635411-635430 Msa0269660:intron 45.0%
TGGCCATGAGAGTCAATCAA+TGG + chr2_3:635417-635436 None:intergenic 45.0%
TAAACACAGCCACCTTCACA+AGG - chr2_3:635448-635467 Msa0269660:intron 45.0%
GTTAACTCCTGATGAAGCTC+CGG + chr2_3:635719-635738 None:intergenic 45.0%
! TTAGCGTTGGAGAGGGAAAG+AGG + chr2_3:629967-629986 None:intergenic 50.0%
!! TGTAACAGTGGTGGTGGGAA+GGG + chr2_3:630011-630030 None:intergenic 50.0%
GTAGCTGTAACAGTGGTGGT+GGG + chr2_3:630016-630035 None:intergenic 50.0%
AGTAGCTGTAACAGTGGTGG+TGG + chr2_3:630017-630036 None:intergenic 50.0%
!! CAAGGAGTGCGCTCTTTTCT+AGG + chr2_3:630502-630521 None:intergenic 50.0%
! CTAGAAAAGAGCGCACTCCT+TGG - chr2_3:630500-630519 Msa0269660:intron 50.0%
GGGGCAAATGCAAGCAAATG+CGG - chr2_3:630756-630775 Msa0269660:intron 50.0%
CAACTACAATTGTGGCCGAC+TGG + chr2_3:630782-630801 None:intergenic 50.0%
GTCGCTTGCAACTGCAATTG+TGG + chr2_3:631009-631028 None:intergenic 50.0%
! GATGCAAAAGTGGAAGGCAC+TGG - chr2_3:631293-631312 Msa0269660:CDS 50.0%
!! AAAGTGGAAGGCACTGGTTC+AGG - chr2_3:631299-631318 Msa0269660:CDS 50.0%
!! GCACTGGTTCAGGCTTCATT+TGG - chr2_3:631309-631328 Msa0269660:CDS 50.0%
!! TGGAGCACTGACACGTATAC+AGG + chr2_3:631611-631630 None:intergenic 50.0%
CACGACCAAATGAGCTAACG+GGG - chr2_3:633183-633202 Msa0269660:intron 50.0%
ACGACCAAATGAGCTAACGG+GGG - chr2_3:633184-633203 Msa0269660:intron 50.0%
AAACCCCCCGTTAGCTCATT+TGG + chr2_3:633191-633210 None:intergenic 50.0%
GGACGAGTCTCCTTGAAAAG+AGG + chr2_3:633220-633239 None:intergenic 50.0%
AGTGACATGGAAGCCACATG+TGG + chr2_3:633284-633303 None:intergenic 50.0%
AGGTGTAGCGTCAAGTGACA+TGG + chr2_3:633297-633316 None:intergenic 50.0%
ACAGGTTAGAAGGACAGGGA+TGG + chr2_3:633807-633826 None:intergenic 50.0%
! GGACAGAGTTGCTTTGCCAT+TGG - chr2_3:634109-634128 Msa0269660:intron 50.0%
ATGCAGGTGGTCAGTGGTTT+AGG - chr2_3:634417-634436 Msa0269660:intron 50.0%
!! CATTTGGGGAAGGTATCTCG+CGG + chr2_3:634443-634462 None:intergenic 50.0%
GAGATACCTTCCCCAAATGG+AGG - chr2_3:634444-634463 Msa0269660:CDS 50.0%
GATACCTTCCCCAAATGGAG+GGG - chr2_3:634446-634465 Msa0269660:CDS 50.0%
! CCTTTGATAGCCCCTCCATT+TGG + chr2_3:634459-634478 None:intergenic 50.0%
CCAAATGGAGGGGCTATCAA+AGG - chr2_3:634456-634475 Msa0269660:CDS 50.0%
!! CGATGCACGCAAGCTTTGTT+TGG - chr2_3:634773-634792 Msa0269660:intron 50.0%
GACTCTCATGGCCATGTTGT+TGG - chr2_3:635423-635442 Msa0269660:intron 50.0%
ACAGCCACCTTCACAAGGAA+AGG - chr2_3:635453-635472 Msa0269660:intron 50.0%
GGTGGGAAGGGTCTTTGTTG+AGG + chr2_3:629999-630018 None:intergenic 55.0%
!! CTGTAACAGTGGTGGTGGGA+AGG + chr2_3:630012-630031 None:intergenic 55.0%
!! ACTAAACCCTAGGGTTGGCC+TGG + chr2_3:630542-630561 None:intergenic 55.0%
TGCAAGCAAATGCGGCCAGT+CGG - chr2_3:630764-630783 Msa0269660:intron 55.0%
GTGGTGACAGCTCACAACCA+GGG + chr2_3:633159-633178 None:intergenic 55.0%
GCTCATTTGGTCGTGTCACG+TGG + chr2_3:633178-633197 None:intergenic 55.0%
CGACCAAATGAGCTAACGGG+GGG - chr2_3:633185-633204 Msa0269660:intron 55.0%
AAGGAGACTCGTCCACACCT+GGG - chr2_3:633226-633245 Msa0269660:intron 55.0%
GACATGGAAGCCACATGTGG+CGG + chr2_3:633281-633300 None:intergenic 55.0%
CGCGAGATACCTTCCCCAAA+TGG - chr2_3:634441-634460 Msa0269660:CDS 55.0%
ATAGCCCCTCCATTTGGGGA+AGG + chr2_3:634453-634472 None:intergenic 55.0%
GTTCGCGCACGGATGTTAAC+AGG - chr2_3:635378-635397 Msa0269660:intron 55.0%
!! TCAGGTACCGGAGCTTCATC+AGG - chr2_3:635709-635728 Msa0269660:CDS 55.0%
GTGGTGAAGGCTTGGGACCA+AGG + chr2_3:630520-630539 None:intergenic 60.0%
! TGGCCTGGTGGTGAAGGCTT+GGG + chr2_3:630527-630546 None:intergenic 60.0%
! TTGGCCTGGTGGTGAAGGCT+TGG + chr2_3:630528-630547 None:intergenic 60.0%
!! TAGGGTTGGCCTGGTGGTGA+AGG + chr2_3:630533-630552 None:intergenic 60.0%
TTCACCACCAGGCCAACCCT+AGG - chr2_3:630532-630551 Msa0269660:intron 60.0%
TCACCACCAGGCCAACCCTA+GGG - chr2_3:630533-630552 Msa0269660:intron 60.0%
!! AAACCCTAGGGTTGGCCTGG+TGG + chr2_3:630539-630558 None:intergenic 60.0%
CGTGGTGACAGCTCACAACC+AGG + chr2_3:633160-633179 None:intergenic 60.0%
CAAGGAGACTCGTCCACACC+TGG - chr2_3:633225-633244 Msa0269660:intron 60.0%
GGTCCCAAGCCTTCACCACC+AGG - chr2_3:630521-630540 Msa0269660:intron 65.0%
AGAAGAGGGGCCGCCACATG+TGG - chr2_3:633268-633287 Msa0269660:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 629827 635944 629827 ID=Msa0269660;Name=Msa0269660
chr2_3 mRNA 629827 635944 629827 ID=Msa0269660-mRNA-1;Parent=Msa0269660;Name=Msa0269660-mRNA-1;_AED=0.27;_eAED=0.27;_QI=90|1|1|1|1|1|8|125|321
chr2_3 exon 629827 630058 629827 ID=Msa0269660-mRNA-1:exon:289;Parent=Msa0269660-mRNA-1
chr2_3 exon 630297 630371 630297 ID=Msa0269660-mRNA-1:exon:288;Parent=Msa0269660-mRNA-1
chr2_3 exon 631261 631348 631261 ID=Msa0269660-mRNA-1:exon:287;Parent=Msa0269660-mRNA-1
chr2_3 exon 631603 631725 631603 ID=Msa0269660-mRNA-1:exon:286;Parent=Msa0269660-mRNA-1
chr2_3 exon 633634 633723 633634 ID=Msa0269660-mRNA-1:exon:285;Parent=Msa0269660-mRNA-1
chr2_3 exon 633813 633875 633813 ID=Msa0269660-mRNA-1:exon:284;Parent=Msa0269660-mRNA-1
chr2_3 exon 634422 634571 634422 ID=Msa0269660-mRNA-1:exon:283;Parent=Msa0269660-mRNA-1
chr2_3 exon 635585 635944 635585 ID=Msa0269660-mRNA-1:exon:282;Parent=Msa0269660-mRNA-1
chr2_3 five_prime_UTR 635855 635944 635855 ID=Msa0269660-mRNA-1:five_prime_utr;Parent=Msa0269660-mRNA-1
chr2_3 CDS 635585 635854 635585 ID=Msa0269660-mRNA-1:cds;Parent=Msa0269660-mRNA-1
chr2_3 CDS 634422 634571 634422 ID=Msa0269660-mRNA-1:cds;Parent=Msa0269660-mRNA-1
chr2_3 CDS 633813 633875 633813 ID=Msa0269660-mRNA-1:cds;Parent=Msa0269660-mRNA-1
chr2_3 CDS 633634 633723 633634 ID=Msa0269660-mRNA-1:cds;Parent=Msa0269660-mRNA-1
chr2_3 CDS 631603 631725 631603 ID=Msa0269660-mRNA-1:cds;Parent=Msa0269660-mRNA-1
chr2_3 CDS 631261 631348 631261 ID=Msa0269660-mRNA-1:cds;Parent=Msa0269660-mRNA-1
chr2_3 CDS 630297 630371 630297 ID=Msa0269660-mRNA-1:cds;Parent=Msa0269660-mRNA-1
chr2_3 CDS 629952 630058 629952 ID=Msa0269660-mRNA-1:cds;Parent=Msa0269660-mRNA-1
chr2_3 three_prime_UTR 629827 629951 629827 ID=Msa0269660-mRNA-1:three_prime_utr;Parent=Msa0269660-mRNA-1
Gene Sequence

>Msa0269660

ATGGTTGCAACAAAACCAATCATCACAATGTTTTCTCTCCAAATGAACCTCTTTCCCTCTCCAACGCTAACTACTCATTCCTCAACAAAGACCCTTCCCACCACCACTGTTACAGCTACTAAGCGAAGAGCCATAGTCTTCAGTTCAAGTCTTGTAGTTGCTTCTTGGCTTAATTTCCTTAATTTCAATTCAACACAACCACTTTCACTTTCACAACAACTACAAGATGAACTTCAACAACAAGAAGACCACCTTGTGCATTTGTTTCAGGAAACTTCACCATCTGTTGTTTCCATTAAAGACATTGAATTGACTAAAGTCCCCAAAACCTCTTCTAATGAAGTCATGCTAGATGAGGATGAAGATGCAAAAGTGGAAGGCACTGGTTCAGGCTTCATTTGGGATAAATTTGGCCACATAGTTACCAATTACCATGTTGTAGCTAAACTAGCTACCGATACTAGTGGTTTACAACGTTGTAAGGTTTTCCTAGTTGATGCCAATGGGAATAACTTTTCCAGGGAAGGGAAAATAATTGGGTTTGATCCATCATATGATCTAGCTGTTCTGAAGGTTGATGTTGATGGATACGAAATAAAGCCTGTTGTTATTGGTGAATCTAAGAATTTACATGTTGGACAGAGTTGCTTTGCCATTGGGAATCCTTATGGATATGAGAATACTCTCACAACAGGGGTGGTCAGTGGTTTAGGCCGCGAGATACCTTCCCCAAATGGAGGGGCTATCAAAGGAGCTATTCAAACTGATGCAGCTATTAATGCAGGAAATTCAGGCGGACCATTGATTGACTCTCATGGCCATGTTGTTGGAGTAAACACAGCCACCTTCACAAGGAAAGGTACCGGAGCTTCATCAGGAGTTAACTTTGCAATTCCCATCGACTCTGTAATTAGAAGTGTACCATCCCTTATTGTATATGGAACACCTTATACTAATAGGTTTTGA

Protein sequence

>Msa0269660

MVATKPIITMFSLQMNLFPSPTLTTHSSTKTLPTTTVTATKRRAIVFSSSLVVASWLNFLNFNSTQPLSLSQQLQDELQQQEDHLVHLFQETSPSVVSIKDIELTKVPKTSSNEVMLDEDEDAKVEGTGSGFIWDKFGHIVTNYHVVAKLATDTSGLQRCKVFLVDANGNNFSREGKIIGFDPSYDLAVLKVDVDGYEIKPVVIGESKNLHVGQSCFAIGNPYGYENTLTTGVVSGLGREIPSPNGGAIKGAIQTDAAINAGNSGGPLIDSHGHVVGVNTATFTRKGTGASSGVNFAIPIDSVIRSVPSLIVYGTPYTNRF*