AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1382100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382100 MtrunA17_Chr2g0285791 96.000 325 9 1 1 321 1 325 0.0 637
Msa1382100 MtrunA17_Chr6g0453121 48.085 235 110 4 82 314 126 350 5.00e-60 198
Msa1382100 MtrunA17_Chr6g0450671 42.321 293 141 9 27 314 54 323 4.03e-59 196
Msa1382100 MtrunA17_Chr7g0272621 36.517 178 103 5 129 305 147 315 3.36e-22 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382100 AT4G18370.1 73.305 236 59 2 86 321 92 323 1.46e-124 360
Msa1382100 AT4G18370.2 71.751 177 46 2 86 262 92 264 6.43e-87 262
Msa1382100 AT4G18370.3 70.270 148 40 2 86 233 92 235 6.30e-70 218
Msa1382100 AT5G39830.1 46.835 237 108 5 82 313 116 339 2.79e-59 197
Msa1382100 AT3G27925.1 46.444 239 106 6 77 314 113 330 1.78e-57 192
Msa1382100 AT3G27925.2 46.444 239 106 6 77 314 113 330 1.78e-57 192
Msa1382100 AT5G39830.2 43.038 237 103 5 82 313 116 325 2.68e-51 175
Msa1382100 AT5G27660.2 37.288 177 99 6 129 303 149 315 2.30e-19 88.6
Msa1382100 AT5G27660.1 37.288 177 99 6 129 303 144 310 2.75e-19 88.2

Find 92 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCTTGTGCATTTGTTTC+AGG 0.129362 tig0020490:-35677 Msa1382100:intron
AGTCAATTCAATGTCTTTAA+TGG 0.134990 tig0020490:+34620 None:intergenic
TCCAGGGAAGGGAAAATAAT+TGG 0.154649 tig0020490:-33761 Msa1382100:CDS
GAAATAAAGCCTGTTGTTAT+TGG 0.182109 tig0020490:-31778 Msa1382100:CDS
GGCTTCATTTGGGATAAATT+TGG 0.201587 tig0020490:-34522 Msa1382100:CDS
CAAGTCTTGTAGTTGCTTCT+TGG 0.214119 tig0020490:-35780 Msa1382100:CDS
TTTCAGATTCTAATTGCTTA+TGG 0.218025 tig0020490:+35961 None:intergenic
CTTTGATAGCCCCTCCATTT+GGG 0.261671 tig0020490:+31387 None:intergenic
TTTAGCTACAACATGGTAAT+TGG 0.266241 tig0020490:+33942 None:intergenic
GACTTCATTAGAAGAGGTTT+TGG 0.274618 tig0020490:+34590 None:intergenic
TTTCAAAACCTATTAGTATA+AGG 0.279957 tig0020490:+30043 None:intergenic
CCTTTGATAGCCCCTCCATT+TGG 0.294286 tig0020490:+31386 None:intergenic
ATGCAGGTGGTCAGTGGTTT+AGG 0.298156 tig0020490:-31425 Msa1382100:intron
GTACCATCCCTTATTGTATA+TGG 0.304932 tig0020490:-30070 Msa1382100:CDS
TTTGCCATTGGGAATCCTTA+TGG 0.306916 tig0020490:-31721 Msa1382100:CDS
ATGGAACACCTTATACTAAT+AGG 0.308611 tig0020490:-30051 Msa1382100:CDS
GAGAGGGAAAGAGGTTCATT+TGG 0.325824 tig0020490:+35887 None:intergenic
GCACTGGTTCAGGCTTCATT+TGG 0.338673 tig0020490:-34533 Msa1382100:CDS
AAAGTGGAAGGCACTGGTTC+AGG 0.378478 tig0020490:-34543 Msa1382100:CDS
CACTGGTTCAGGCTTCATTT+GGG 0.391449 tig0020490:-34532 Msa1382100:CDS
CCAGGGAAGGGAAAATAATT+GGG 0.392744 tig0020490:-33760 Msa1382100:CDS
GACAGAGTTGCTTTGCCATT+GGG 0.398813 tig0020490:-31732 Msa1382100:CDS
GACTCTCATGGCCATGTTGT+TGG 0.403469 tig0020490:-30419 Msa1382100:CDS
TATTTGCAGGTTGATGTTGA+TGG 0.405637 tig0020490:-31805 Msa1382100:intron
AAGGTGTTCCATATACAATA+AGG 0.408680 tig0020490:+30062 None:intergenic
TAGTGGTTTACAACGTTGTA+AGG 0.411713 tig0020490:-33905 Msa1382100:intron
CGGATGTTAACAGGAAATTC+AGG 0.411871 tig0020490:-30455 Msa1382100:intron
TATGAGAATACTCTCACAAC+AGG 0.425005 tig0020490:-31697 Msa1382100:CDS
AGAGAAAACATTGTGATGAT+TGG 0.430574 tig0020490:+35910 None:intergenic
AAGACTTGAACTGAAGACTA+TGG 0.430823 tig0020490:+35795 None:intergenic
TTAGATTCACCAATAACAAC+AGG 0.438438 tig0020490:+31769 None:intergenic
AGAATATGAGAGAACAGAAA+AGG 0.442429 tig0020490:-36003 Msa1382100:five_prime_UTR
GTTGTGTTGAATTGAAATTA+AGG 0.445017 tig0020490:+35749 None:intergenic
GGTGGGAAGGGTCTTTGTTG+AGG 0.458920 tig0020490:+35846 None:intergenic
TCAGGTACCGGAGCTTCATC+AGG 0.470733 tig0020490:-30133 Msa1382100:intron
AGGTGTTCCATATACAATAA+GGG 0.471453 tig0020490:+30063 None:intergenic
ATTACCTTTCCTTGTGAAGG+TGG 0.475479 tig0020490:+30385 None:intergenic
CCTGGAAAAGTTATTCCCAT+TGG 0.481148 tig0020490:+33778 None:intergenic
CGCGAGATACCTTCCCCAAA+TGG 0.481655 tig0020490:-31401 Msa1382100:CDS
TGAGGATGAAGATGCAAAAG+TGG 0.487615 tig0020490:-34559 Msa1382100:CDS
TATATTACCTTTCCTTGTGA+AGG 0.491019 tig0020490:+30382 None:intergenic
AGTAGCTGTAACAGTGGTGG+TGG 0.505438 tig0020490:+35828 None:intergenic
TGTAACAGTGGTGGTGGGAA+GGG 0.505477 tig0020490:+35834 None:intergenic
ATGAGTAGTTAGCGTTGGAG+AGG 0.508532 tig0020490:+35870 None:intergenic
TTAGCGTTGGAGAGGGAAAG+AGG 0.508546 tig0020490:+35878 None:intergenic
CTGTAACAGTGGTGGTGGGA+AGG 0.510652 tig0020490:+35833 None:intergenic
GGACAGAGTTGCTTTGCCAT+TGG 0.512294 tig0020490:-31733 Msa1382100:CDS
TATTCCCATTGGCATCAACT+AGG 0.514434 tig0020490:+33789 None:intergenic
TAGCATGACTTCATTAGAAG+AGG 0.522603 tig0020490:+34584 None:intergenic
AGAGTATTCTCATATCCATA+AGG 0.524491 tig0020490:+31706 None:intergenic
GAGGAATGAGTAGTTAGCGT+TGG 0.524538 tig0020490:+35865 None:intergenic
CTGAAAGAGAAAGTGTTGTA+TGG 0.530063 tig0020490:-35944 Msa1382100:exon
AGTTGTTGTGAAAGTGAAAG+TGG 0.535180 tig0020490:+35727 None:intergenic
GTTAACTCCTGATGAAGCTC+CGG 0.541628 tig0020490:+30126 None:intergenic
ACTGATGCAGCTATTAATGC+AGG 0.543845 tig0020490:-31353 Msa1382100:intron
ACTTCTAATTACAGAGTCGA+TGG 0.545161 tig0020490:+30093 None:intergenic
TGAGTAGTTAGCGTTGGAGA+GGG 0.552406 tig0020490:+35871 None:intergenic
ATGAGAGAACAGAAAAGGAA+TGG 0.563912 tig0020490:-35998 Msa1382100:five_prime_UTR
GGACCATTGATTGACTCTCA+TGG 0.566441 tig0020490:-30431 Msa1382100:CDS
TTTGATAGCCCCTCCATTTG+GGG 0.566803 tig0020490:+31388 None:intergenic
TGGCCATGAGAGTCAATCAA+TGG 0.568108 tig0020490:+30428 None:intergenic
ATATGATCTAGCTGTTCTGA+AGG 0.569824 tig0020490:-33726 Msa1382100:intron
AGAACAGCTAGATCATATGA+TGG 0.573622 tig0020490:+33731 None:intergenic
CCAAATGGAGGGGCTATCAA+AGG 0.574726 tig0020490:-31386 Msa1382100:CDS
AGATACCTTCCCCAAATGGA+GGG 0.575115 tig0020490:-31397 Msa1382100:CDS
ATAGCCCCTCCATTTGGGGA+AGG 0.577157 tig0020490:+31392 None:intergenic
GATGCAAAAGTGGAAGGCAC+TGG 0.579458 tig0020490:-34549 Msa1382100:CDS
GAATCTAAGAATTTACATGT+TGG 0.582777 tig0020490:-31754 Msa1382100:CDS
ACGTTGTAAACCACTAGTAT+CGG 0.589338 tig0020490:+33912 None:intergenic
GAGATACCTTCCCCAAATGG+AGG 0.591441 tig0020490:-31398 Msa1382100:CDS
TAAATTATGCAGGTGGTCAG+TGG 0.593859 tig0020490:-31431 Msa1382100:intron
ACAGCCACCTTCACAAGGAA+AGG 0.596510 tig0020490:-30389 Msa1382100:intron
GATGAAGATGCAAAAGTGGA+AGG 0.620131 tig0020490:-34555 Msa1382100:CDS
CTGTGTTTACTCCAACAACA+TGG 0.626621 tig0020490:+30408 None:intergenic
CTTCTAATTACAGAGTCGAT+GGG 0.626746 tig0020490:+30094 None:intergenic
TAATGAAGTCATGCTAGATG+AGG 0.628611 tig0020490:-34577 Msa1382100:CDS
CTTAGTAGCTGTAACAGTGG+TGG 0.631185 tig0020490:+35825 None:intergenic
TCTTTAATGGAAACAACAGA+TGG 0.633125 tig0020490:+34633 None:intergenic
GTTCCATATACAATAAGGGA+TGG 0.636651 tig0020490:+30067 None:intergenic
TAAACACAGCCACCTTCACA+AGG 0.639628 tig0020490:-30394 Msa1382100:CDS
ATGAGAATACTCTCACAACA+GGG 0.643517 tig0020490:-31696 Msa1382100:CDS
GATACCTTCCCCAAATGGAG+GGG 0.644193 tig0020490:-31396 Msa1382100:CDS
GTAGCTGTAACAGTGGTGGT+GGG 0.650253 tig0020490:+35829 None:intergenic
TCGCTTAGTAGCTGTAACAG+TGG 0.652682 tig0020490:+35822 None:intergenic
TAGCTAGTTTAGCTACAACA+TGG 0.693427 tig0020490:+33935 None:intergenic
ATATCCATAAGGATTCCCAA+TGG 0.696972 tig0020490:+31717 None:intergenic
AAACTAGCTACCGATACTAG+TGG 0.701856 tig0020490:-33922 Msa1382100:CDS
AAACCTGAAACAAATGCACA+AGG 0.703790 tig0020490:+35674 None:intergenic
ATGTTAACAGGAAATTCAGG+CGG 0.717135 tig0020490:-30452 Msa1382100:intron
TGAGAATACTCTCACAACAG+GGG 0.741501 tig0020490:-31695 Msa1382100:intron
CCTGAAACAAATGCACAAGG+TGG 0.756569 tig0020490:+35677 None:intergenic
CATTTGGGGAAGGTATCTCG+CGG 0.758593 tig0020490:+31402 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CGTATTTTTTTTTTAAATAA+TGG + tig0020490:31533-31552 None:intergenic 10.0%
!! ATTATAAAAAATAGTGAAAG+GGG + tig0020490:30305-30324 None:intergenic 15.0%
!! CATTATAAAAAATAGTGAAA+GGG + tig0020490:30306-30325 None:intergenic 15.0%
!! ACATTATAAAAAATAGTGAA+AGG + tig0020490:30307-30326 None:intergenic 15.0%
!!! TATTTTTTATAATGTAGTGT+TGG - tig0020490:30312-30331 Msa1382100:intron 15.0%
!!! ATTTTTTATAATGTAGTGTT+GGG - tig0020490:30313-30332 Msa1382100:intron 15.0%
!!! TTTAATCAAATTTTGCAATT+GGG - tig0020490:30385-30404 Msa1382100:intron 15.0%
!!! TTCTTGAACTAATTTTTTTT+GGG - tig0020490:30443-30462 Msa1382100:CDS 15.0%
!!! TATTATATTTCTAAAGTTCA+TGG - tig0020490:30698-30717 Msa1382100:intron 15.0%
!! AAAAATAATAATCATATGTC+AGG + tig0020490:33872-33891 None:intergenic 15.0%
!! CAATAGTTAGTTATAAAAAT+TGG + tig0020490:33939-33958 None:intergenic 15.0%
!!! TTTTCTTAATATGTGTAAAA+TGG + tig0020490:34739-34758 None:intergenic 15.0%
!! ATTAGTAGATAAGTATAAAA+TGG - tig0020490:34959-34978 Msa1382100:intron 15.0%
!!! TTTTTTTTCAAATGTGATAT+AGG - tig0020490:35301-35320 Msa1382100:intron 15.0%
!!! TTTTTTTCAAATGTGATATA+GGG - tig0020490:35302-35321 Msa1382100:intron 15.0%
!!! GTTTAATCAAATTTTGCAAT+TGG - tig0020490:30384-30403 Msa1382100:intron 20.0%
!!! GTTCTTGAACTAATTTTTTT+TGG - tig0020490:30442-30461 Msa1382100:CDS 20.0%
!! ACAAAAACAAACCATTAATT+TGG + tig0020490:30756-30775 None:intergenic 20.0%
!!! ATTTTCATTCTTTTGATATG+TGG - tig0020490:30794-30813 Msa1382100:intron 20.0%
!! TTAAATGTAATCATATGTGT+CGG - tig0020490:30972-30991 Msa1382100:intron 20.0%
!!! ATCTAAAATAAGAAGTTTGA+TGG + tig0020490:32077-32096 None:intergenic 20.0%
!!! ATCAAACTTCTTATTTTAGA+TGG - tig0020490:32076-32095 Msa1382100:intron 20.0%
!! ATTAATGAATAGAAAAGAAG+AGG + tig0020490:32250-32269 None:intergenic 20.0%
!! AAAATGACTTTCACATATTT+GGG + tig0020490:32371-32390 None:intergenic 20.0%
!!! TCCTTTTTTTTGTTTTGTTT+TGG - tig0020490:32957-32976 Msa1382100:intron 20.0%
!! ACCAAAACAAAACAAAAAAA+AGG + tig0020490:32961-32980 None:intergenic 20.0%
!! TTAGATATGATATCATAATC+CGG - tig0020490:33491-33510 Msa1382100:intron 20.0%
!! AAATTGGATGAAATAATTAG+TGG - tig0020490:33787-33806 Msa1382100:CDS 20.0%
!! TGTAACTAACTATTGATATA+TGG - tig0020490:34006-34025 Msa1382100:intron 20.0%
!!! TTCCTTAATTTTAATCCATA+GGG + tig0020490:34675-34694 None:intergenic 20.0%
!!! TTTCCTTAATTTTAATCCAT+AGG + tig0020490:34676-34695 None:intergenic 20.0%
!! GATTAAAAAAAGAAAGAGAA+TGG - tig0020490:34762-34781 Msa1382100:intron 20.0%
!! CGATAATGAAAATACATAAA+TGG + tig0020490:34814-34833 None:intergenic 20.0%
!!! TTTTCTCAATTAAGTTTAGA+AGG - tig0020490:35011-35030 Msa1382100:intron 20.0%
!! TTTCTCAATTAAGTTTAGAA+GGG - tig0020490:35012-35031 Msa1382100:intron 20.0%
!! GAACTCTCTAATTAATATTA+TGG + tig0020490:35219-35238 None:intergenic 20.0%
!! TTTCAAAACCTATTAGTATA+AGG + tig0020490:35895-35914 None:intergenic 20.0%
!!! TTTCAGTTTTAGAATAAACA+TGG + tig0020490:36006-36025 None:intergenic 20.0%
! TTTCAGATTCTAATTGCTTA+TGG + tig0020490:29977-29996 None:intergenic 25.0%
! GTTGTGTTGAATTGAAATTA+AGG + tig0020490:30189-30208 None:intergenic 25.0%
! TAGTTCATGAACTAAATTGA+CGG - tig0020490:30651-30670 Msa1382100:intron 25.0%
! ATTAAGCATTTGATTATCAC+AGG - tig0020490:31271-31290 Msa1382100:intron 25.0%
! AGTCAATTCAATGTCTTTAA+TGG + tig0020490:31318-31337 None:intergenic 25.0%
!!! TTGTTTTTCATCTTACTATG+TGG + tig0020490:31439-31458 None:intergenic 25.0%
! ACAAGCAGAATCAAATTAAA+GGG + tig0020490:31489-31508 None:intergenic 25.0%
! AACAAGCAGAATCAAATTAA+AGG + tig0020490:31490-31509 None:intergenic 25.0%
! ATAAGATAATTGCTCTACTA+TGG + tig0020490:31724-31743 None:intergenic 25.0%
! GAAAAACTGTTTGAAAACAT+TGG - tig0020490:31807-31826 Msa1382100:intron 25.0%
! ATAATTTGACAAACTATCTC+AGG - tig0020490:31862-31881 Msa1382100:intron 25.0%
! AAAGACTATATCTATGTCAT+GGG + tig0020490:31901-31920 None:intergenic 25.0%
! TAAAGACTATATCTATGTCA+TGG + tig0020490:31902-31921 None:intergenic 25.0%
! ACCTTGAAAGTTTGAAAAAA+TGG + tig0020490:31938-31957 None:intergenic 25.0%
!!! GTCATTTGTTTTTTTTCTTC+TGG - tig0020490:31959-31978 Msa1382100:intron 25.0%
! GGAAGAAACATATGTAATAT+TGG - tig0020490:32097-32116 Msa1382100:intron 25.0%
! AACAGAGAAATCAAAATGTT+CGG + tig0020490:32279-32298 None:intergenic 25.0%
! GAAAATGACTTTCACATATT+TGG + tig0020490:32372-32391 None:intergenic 25.0%
! TGATATTATGCAACAAACTA+TGG - tig0020490:32447-32466 Msa1382100:intron 25.0%
! TACAAAGCTGATAAAAAAAG+TGG + tig0020490:32620-32639 None:intergenic 25.0%
!! TTCTTTTGGCATTTGATAAA+TGG - tig0020490:32653-32672 Msa1382100:intron 25.0%
! CTCAAAATAATTCAAGAATC+AGG + tig0020490:32679-32698 None:intergenic 25.0%
!!! CTGATTCTTGAATTATTTTG+AGG - tig0020490:32677-32696 Msa1382100:intron 25.0%
! TGTATCATTTGATTCACAAT+AGG - tig0020490:32772-32791 Msa1382100:intron 25.0%
! CAATTCACAATTCAGAAAAT+AGG - tig0020490:32800-32819 Msa1382100:intron 25.0%
! TGTATCATTTGATTCACAAT+AGG - tig0020490:32772-32791 Msa1382100:intron 25.0%
! CAATTCACAATTCAGAAAAT+AGG - tig0020490:32800-32819 Msa1382100:intron 25.0%
! TTTATATTCAAGTCGTGAAT+CGG + tig0020490:32909-32928 None:intergenic 25.0%
! TAGAACCTTACACTAATATT+GGG + tig0020490:33009-33028 None:intergenic 25.0%
! TTAGAACCTTACACTAATAT+TGG + tig0020490:33010-33029 None:intergenic 25.0%
! ATAAAGAAACCAACTTACTA+GGG + tig0020490:33071-33090 None:intergenic 25.0%
! GTCTTATCATATTAAGTGTT+TGG - tig0020490:33163-33182 Msa1382100:intron 25.0%
! TACATCTTATTCTTCATTCT+TGG + tig0020490:33425-33444 None:intergenic 25.0%
! ATAAGATGAAGAATACAGAA+TGG + tig0020490:33522-33541 None:intergenic 25.0%
! GACTTATTTGTAAAGAAGTT+AGG - tig0020490:33667-33686 Msa1382100:intron 25.0%
! ATAATTAGTGGCATGATAAT+AGG - tig0020490:33799-33818 Msa1382100:intron 25.0%
! TAATTAGTGGCATGATAATA+GGG - tig0020490:33800-33819 Msa1382100:intron 25.0%
!!! CAAAGTATTTTTACAGCTAA+GGG + tig0020490:34048-34067 None:intergenic 25.0%
!!! ACAAAGTATTTTTACAGCTA+AGG + tig0020490:34049-34068 None:intergenic 25.0%
! AAAGTAAGATTCACAAAAGT+AGG + tig0020490:34088-34107 None:intergenic 25.0%
! GAATCTAAGAATTTACATGT+TGG - tig0020490:34181-34200 Msa1382100:intron 25.0%
! ATCCTTCATCTATAACTATT+TGG + tig0020490:34351-34370 None:intergenic 25.0%
! ACATAAAGAACCACAAATAA+GGG + tig0020490:34617-34636 None:intergenic 25.0%
! AACATAAAGAACCACAAATA+AGG + tig0020490:34618-34637 None:intergenic 25.0%
!!! TATTGTTTTTCACTTTGCAT+TGG + tig0020490:34837-34856 None:intergenic 25.0%
! AATGCAAAGTGAAAAACAAT+AGG - tig0020490:34836-34855 Msa1382100:intron 25.0%
! AAAGTGAAAAACAATAGGTT+AGG - tig0020490:34841-34860 Msa1382100:intron 25.0%
! AAGTGAAAAACAATAGGTTA+GGG - tig0020490:34842-34861 Msa1382100:intron 25.0%
! ATAAGCTCATATGACAAAAA+AGG + tig0020490:35146-35165 None:intergenic 25.0%
! TCTGCTATAAACTAGAAAAT+TGG - tig0020490:35178-35197 Msa1382100:intron 25.0%
!! ATTAATATTATGGCTCTGTT+TGG + tig0020490:35209-35228 None:intergenic 25.0%
! TATTAATTAGAGAGTTCGAT+TGG - tig0020490:35222-35241 Msa1382100:intron 25.0%
!! TACTGAAATCTAAAACAAGA+TGG + tig0020490:35400-35419 None:intergenic 25.0%
! TACACGATAAAATACAATGA+AGG + tig0020490:35584-35603 None:intergenic 25.0%
! ATGAAGTATAAATATGGGAA+AGG + tig0020490:35625-35644 None:intergenic 25.0%
! CGCAAATGAAGTATAAATAT+GGG + tig0020490:35630-35649 None:intergenic 25.0%
! ACGCAAATGAAGTATAAATA+TGG + tig0020490:35631-35650 None:intergenic 25.0%
!!! ATTTCTAGACTTCAATTTTG+TGG + tig0020490:35718-35737 None:intergenic 25.0%
!! TTTTGCTTTCAATCTAATTC+AGG - tig0020490:35784-35803 Msa1382100:CDS 25.0%
!!! CATGTAATCAACTTTTTTTG+TGG - tig0020490:35918-35937 Msa1382100:CDS 25.0%
AGAATATGAGAGAACAGAAA+AGG - tig0020490:29932-29951 Msa1382100:three_prime_UTR 30.0%
AGAGAAAACATTGTGATGAT+TGG + tig0020490:30028-30047 None:intergenic 30.0%
! GGGTCATGAACTTTAAAAAT+AGG - tig0020490:30405-30424 Msa1382100:CDS 30.0%
!! TGACGGATTGAAAATAGTTT+AGG - tig0020490:30668-30687 Msa1382100:intron 30.0%
!! GACGGATTGAAAATAGTTTA+GGG - tig0020490:30669-30688 Msa1382100:intron 30.0%
TAGGTTAGAGACCAAATTAA+TGG - tig0020490:30742-30761 Msa1382100:intron 30.0%
!! AAGTGTTACTTCAACACATT+TGG + tig0020490:30820-30839 None:intergenic 30.0%
! TGAAGTAACACTTTTGATGT+TGG - tig0020490:30827-30846 Msa1382100:intron 30.0%
! GAAGTAACACTTTTGATGTT+GGG - tig0020490:30828-30847 Msa1382100:intron 30.0%
! AAGTAACACTTTTGATGTTG+GGG - tig0020490:30829-30848 Msa1382100:intron 30.0%
AATGAAGCACAGATACTATT+CGG + tig0020490:31043-31062 None:intergenic 30.0%
! AAGTTTAAAACCAATGCATG+TGG - tig0020490:31143-31162 Msa1382100:intron 30.0%
TCTTTAATGGAAACAACAGA+TGG + tig0020490:31305-31324 None:intergenic 30.0%
! ACTTCATTAGAAGAGGTTTT+GGG + tig0020490:31347-31366 None:intergenic 30.0%
GATGAAAAACAAATCAGAAG+AGG - tig0020490:31447-31466 Msa1382100:intron 30.0%
CAAGCAGAATCAAATTAAAG+GGG + tig0020490:31488-31507 None:intergenic 30.0%
! AAATACGACGCTTTAGATTA+AGG - tig0020490:31546-31565 Msa1382100:intron 30.0%
TGACACTAATATCTAGATAC+TGG + tig0020490:31666-31685 None:intergenic 30.0%
TTGCTTTCAAGATGTTGTAA+TGG - tig0020490:31755-31774 Msa1382100:CDS 30.0%
ACTGTGAATACCTAAATGTA+AGG - tig0020490:31830-31849 Msa1382100:intron 30.0%
!!! GCCATTTTTTCAAACTTTCA+AGG - tig0020490:31934-31953 Msa1382100:intron 30.0%
TTTAGCTACAACATGGTAAT+TGG + tig0020490:31996-32015 None:intergenic 30.0%
GAGTTTATACTTCTATCTGT+AGG - tig0020490:32119-32138 Msa1382100:intron 30.0%
TGAATAGAAAAGAAGAGGAT+TGG + tig0020490:32245-32264 None:intergenic 30.0%
ACAGAGAAATCAAAATGTTC+GGG + tig0020490:32278-32297 None:intergenic 30.0%
ATAGATACACGCTAACATTT+GGG + tig0020490:32528-32547 None:intergenic 30.0%
AATAGATACACGCTAACATT+TGG + tig0020490:32529-32548 None:intergenic 30.0%
GTGATTCGTTACAATGAATT+AGG + tig0020490:32575-32594 None:intergenic 30.0%
!! ATAACCAACCACTTTTCTTT+TGG - tig0020490:32639-32658 Msa1382100:intron 30.0%
ATCAAATGCCAAAAGAAAAG+TGG + tig0020490:32650-32669 None:intergenic 30.0%
ACACTAATATTGGGAATCAA+AGG + tig0020490:33000-33019 None:intergenic 30.0%
TGATTCCCAATATTAGTGTA+AGG - tig0020490:33001-33020 Msa1382100:intron 30.0%
CATAAAGAAACCAACTTACT+AGG + tig0020490:33072-33091 None:intergenic 30.0%
!! CTAGTAAGTTGGTTTCTTTA+TGG - tig0020490:33070-33089 Msa1382100:intron 30.0%
!!! ACAGACAGTTTTTTCTTACT+GGG + tig0020490:33145-33164 None:intergenic 30.0%
! TCTAAGACCTCAGATAATTT+AGG - tig0020490:33220-33239 Msa1382100:intron 30.0%
TTCTCCTCGTCATATTAAAA+GGG + tig0020490:33345-33364 None:intergenic 30.0%
TCTTATTCTTCATTCTTGGA+CGG + tig0020490:33421-33440 None:intergenic 30.0%
TGAAGAATAAGATGTAACAC+CGG - tig0020490:33429-33448 Msa1382100:intron 30.0%
ATCAGCTAATATGGAATATC+CGG + tig0020490:33451-33470 None:intergenic 30.0%
TTGTAATACATGTTGTCAGT+TGG + tig0020490:33642-33661 None:intergenic 30.0%
!! ATGGTCAACAATTCTGAAAT+TGG - tig0020490:33771-33790 Msa1382100:CDS 30.0%
ATGACATTTGATCTATTTGC+AGG - tig0020490:34117-34136 Msa1382100:intron 30.0%
GAAATAAAGCCTGTTGTTAT+TGG - tig0020490:34157-34176 Msa1382100:intron 30.0%
TTAGATTCACCAATAACAAC+AGG + tig0020490:34169-34188 None:intergenic 30.0%
! AGAGTATTCTCATATCCATA+AGG + tig0020490:34232-34251 None:intergenic 30.0%
!! TTGTTAAGTTGAATCCAACA+TGG - tig0020490:34272-34291 Msa1382100:intron 30.0%
CTAATGAAAGTTTACCATGT+TGG + tig0020490:34289-34308 None:intergenic 30.0%
TGCCAAATAGTTATAGATGA+AGG - tig0020490:34346-34365 Msa1382100:intron 30.0%
TCAGATAAAACAAAATCGCT+TGG - tig0020490:34438-34457 Msa1382100:intron 30.0%
TTATGCGATGTAAATTATGC+AGG - tig0020490:34494-34513 Msa1382100:intron 30.0%
! TGCCCTATGGATTAAAATTA+AGG - tig0020490:34670-34689 Msa1382100:intron 30.0%
AGTGAAAAACAATAGGTTAG+GGG - tig0020490:34843-34862 Msa1382100:intron 30.0%
!! GAAAGCGTTGTTAAAATTAG+TGG - tig0020490:34932-34951 Msa1382100:intron 30.0%
! ATGACAAAAAAGGACTTGTT+TGG + tig0020490:35136-35155 None:intergenic 30.0%
ATGTGATATAGGGAGTAATT+TGG - tig0020490:35312-35331 Msa1382100:intron 30.0%
AAACTGTACAATGTAACCAA+CGG - tig0020490:35337-35356 Msa1382100:intron 30.0%
TATATTACCTTTCCTTGTGA+AGG + tig0020490:35556-35575 None:intergenic 30.0%
TGAAAGCAAAACATTCTTGA+AGG + tig0020490:35775-35794 None:intergenic 30.0%
TTTCAATCTAATTCAGGTAC+CGG - tig0020490:35790-35809 Msa1382100:CDS 30.0%
AGGTGTTCCATATACAATAA+GGG + tig0020490:35875-35894 None:intergenic 30.0%
! AAGGTGTTCCATATACAATA+AGG + tig0020490:35876-35895 None:intergenic 30.0%
ATGGAACACCTTATACTAAT+AGG - tig0020490:35884-35903 Msa1382100:CDS 30.0%
ATGAGAGAACAGAAAAGGAA+TGG - tig0020490:29937-29956 Msa1382100:three_prime_UTR 35.0%
!! CTGAAAGAGAAAGTGTTGTA+TGG - tig0020490:29991-30010 Msa1382100:three_prime_UTR 35.0%
AAGACTTGAACTGAAGACTA+TGG + tig0020490:30143-30162 None:intergenic 35.0%
AGTTGTTGTGAAAGTGAAAG+TGG + tig0020490:30211-30230 None:intergenic 35.0%
AAACCTGAAACAAATGCACA+AGG + tig0020490:30264-30283 None:intergenic 35.0%
ATTGGTACCCAAAATTAGCT+GGG + tig0020490:30472-30491 None:intergenic 35.0%
TGTTTGTTCTCGCTTCAATT+AGG + tig0020490:30513-30532 None:intergenic 35.0%
TGACCCAATACAAGAATTGT+TGG - tig0020490:30545-30564 Msa1382100:intron 35.0%
AGTTCATGAACTAAACCCTA+GGG + tig0020490:30644-30663 None:intergenic 35.0%
TAGTTCATGAACTAAACCCT+AGG + tig0020490:30645-30664 None:intergenic 35.0%
CTAAAGTTCATGGACCAAAT+TGG - tig0020490:30708-30727 Msa1382100:intron 35.0%
CTATCATTGTCTCTCCAATT+TGG + tig0020490:30725-30744 None:intergenic 35.0%
CAAATTGGAGAGACAATGAT+AGG - tig0020490:30723-30742 Msa1382100:intron 35.0%
! AGTAACACTTTTGATGTTGG+GGG - tig0020490:30830-30849 Msa1382100:intron 35.0%
ATAGGTCACAACTACAATTG+TGG + tig0020490:30883-30902 None:intergenic 35.0%
TAGTTGTGACCTATGAAACA+CGG - tig0020490:30889-30908 Msa1382100:intron 35.0%
AATGTAATCATATGTGTCGG+TGG - tig0020490:30975-30994 Msa1382100:intron 35.0%
! CACTTTAAAGGACTTTGCAA+CGG + tig0020490:31076-31095 None:intergenic 35.0%
AATCACCATTTCGTATGTGT+TGG + tig0020490:31233-31252 None:intergenic 35.0%
! CTTCATTAGAAGAGGTTTTG+GGG + tig0020490:31346-31365 None:intergenic 35.0%
! GACTTCATTAGAAGAGGTTT+TGG + tig0020490:31348-31367 None:intergenic 35.0%
TAGCATGACTTCATTAGAAG+AGG + tig0020490:31354-31373 None:intergenic 35.0%
TAATGAAGTCATGCTAGATG+AGG - tig0020490:31358-31377 Msa1382100:CDS 35.0%
! GGCTTCATTTGGGATAAATT+TGG - tig0020490:31413-31432 Msa1382100:CDS 35.0%
GTGCTTTCAATTCAATGAAG+TGG - tig0020490:31777-31796 Msa1382100:CDS 35.0%
!!! TTTTTTTTCTTCTGGTGCAC+AGG - tig0020490:31967-31986 Msa1382100:intron 35.0%
! TAGCTAGTTTAGCTACAACA+TGG + tig0020490:32003-32022 None:intergenic 35.0%
ACGTTGTAAACCACTAGTAT+CGG + tig0020490:32026-32045 None:intergenic 35.0%
TAGTGGTTTACAACGTTGTA+AGG - tig0020490:32030-32049 Msa1382100:intron 35.0%
TGATGGAATTATCAGCACAA+GGG + tig0020490:32060-32079 None:intergenic 35.0%
TTGATGGAATTATCAGCACA+AGG + tig0020490:32061-32080 None:intergenic 35.0%
!! TTTTCCTAGTTGATGCCAAT+GGG - tig0020490:32142-32161 Msa1382100:intron 35.0%
! CAATGGGAATAACTTTTCCA+GGG - tig0020490:32158-32177 Msa1382100:intron 35.0%
AGAACAGCTAGATCATATGA+TGG + tig0020490:32207-32226 None:intergenic 35.0%
ATATGATCTAGCTGTTCTGA+AGG - tig0020490:32209-32228 Msa1382100:intron 35.0%
GATTTCTCTGTTATTCCTGT+TGG - tig0020490:32287-32306 Msa1382100:intron 35.0%
AGCATATAGAAGAATCCAAC+AGG + tig0020490:32305-32324 None:intergenic 35.0%
!! TATGGTAATGGATTGGAAAG+TGG + tig0020490:32343-32362 None:intergenic 35.0%
ATTTGGGCATGTTATGGTAA+TGG + tig0020490:32355-32374 None:intergenic 35.0%
TCACATATTTGGGCATGTTA+TGG + tig0020490:32361-32380 None:intergenic 35.0%
AATGCCAAAAGAAAAGTGGT+TGG + tig0020490:32646-32665 None:intergenic 35.0%
! GGAACTAAACATTTGTTGCA+AGG + tig0020490:32940-32959 None:intergenic 35.0%
TCTTTATGGCACAAAAATGC+AGG - tig0020490:33084-33103 Msa1382100:intron 35.0%
AAATGCAGGCATTTGCTTTA+TGG - tig0020490:33098-33117 Msa1382100:intron 35.0%
! TTTTCTTACTGGGACAGAAT+AGG + tig0020490:33135-33154 None:intergenic 35.0%
!!! GACAGACAGTTTTTTCTTAC+TGG + tig0020490:33146-33165 None:intergenic 35.0%
TTGTGTAGTATTAAGGCAGA+TGG + tig0020490:33189-33208 None:intergenic 35.0%
ATCTGCCTTAATACTACACA+AGG - tig0020490:33188-33207 Msa1382100:intron 35.0%
TTGGTCCTTGTGTAGTATTA+AGG + tig0020490:33196-33215 None:intergenic 35.0%
! ATCTGAGGTCTTAGAATACT+TGG + tig0020490:33215-33234 None:intergenic 35.0%
AAGACCTCAGATAATTTAGG+AGG - tig0020490:33223-33242 Msa1382100:intron 35.0%
GTTTCCTCCTAAATTATCTG+AGG + tig0020490:33230-33249 None:intergenic 35.0%
!! GTTTAGAGTTCCTCTTTTCA+AGG - tig0020490:33300-33319 Msa1382100:intron 35.0%
CTTCTCCTCGTCATATTAAA+AGG + tig0020490:33346-33365 None:intergenic 35.0%
TTTAATATGACGAGGAGAAG+AGG - tig0020490:33346-33365 Msa1382100:intron 35.0%
TTAATATGACGAGGAGAAGA+GGG - tig0020490:33347-33366 Msa1382100:intron 35.0%
TACAGTTGCATCAGCTAATA+TGG + tig0020490:33460-33479 None:intergenic 35.0%
ACCATTACTTACAATACTCC+TGG - tig0020490:33563-33582 Msa1382100:intron 35.0%
!! ACCAGGAGTATTGTAAGTAA+TGG + tig0020490:33567-33586 None:intergenic 35.0%
AATACATGTTGTCAGTTGGA+AGG + tig0020490:33638-33657 None:intergenic 35.0%
AGCAAGTTCACAACATTGAA+AGG + tig0020490:33711-33730 None:intergenic 35.0%
CCATTTATGCTTACTGTGAA+AGG + tig0020490:33735-33754 None:intergenic 35.0%
CCTTTCACAGTAAGCATAAA+TGG - tig0020490:33732-33751 Msa1382100:CDS 35.0%
TCACAGTAAGCATAAATGGA+AGG - tig0020490:33736-33755 Msa1382100:CDS 35.0%
CACAGTAAGCATAAATGGAA+GGG - tig0020490:33737-33756 Msa1382100:CDS 35.0%
AGTTAGTTAGACAGGTTAGA+AGG + tig0020490:33910-33929 None:intergenic 35.0%
! GGTTAGTTAGTTAGTTAGAC+AGG + tig0020490:33918-33937 None:intergenic 35.0%
GTAAGATTCACAAAAGTAGG+CGG + tig0020490:34085-34104 None:intergenic 35.0%
!! TATTTGCAGGTTGATGTTGA+TGG - tig0020490:34130-34149 Msa1382100:intron 35.0%
ATATCCATAAGGATTCCCAA+TGG + tig0020490:34221-34240 None:intergenic 35.0%
TATGAGAATACTCTCACAAC+AGG - tig0020490:34238-34257 Msa1382100:intron 35.0%
ATGAGAATACTCTCACAACA+GGG - tig0020490:34239-34258 Msa1382100:intron 35.0%
AGATGAAGGATGAAAATCTG+TGG - tig0020490:34360-34379 Msa1382100:intron 35.0%
! GTAAGCTATACCCTTATTTG+TGG - tig0020490:34604-34623 Msa1382100:CDS 35.0%
TCAAATGCGACGATTATTGT+GGG + tig0020490:34716-34735 None:intergenic 35.0%
! CTTTGTTTGGTAAAAGGTAG+CGG - tig0020490:34879-34898 Msa1382100:intron 35.0%
!! AGAATTCTAAGAAGCATTGG+GGG + tig0020490:35377-35396 None:intergenic 35.0%
!! GAGAATTCTAAGAAGCATTG+GGG + tig0020490:35378-35397 None:intergenic 35.0%
!! GGAGAATTCTAAGAAGCATT+GGG + tig0020490:35379-35398 None:intergenic 35.0%
! TGGAGAATTCTAAGAAGCAT+TGG + tig0020490:35380-35399 None:intergenic 35.0%
CTATGATCAGAAGTAAAGGA+TGG + tig0020490:35427-35446 None:intergenic 35.0%
CATCCTTTACTTCTGATCAT+AGG - tig0020490:35425-35444 Msa1382100:intron 35.0%
AGTCCTATGATCAGAAGTAA+AGG + tig0020490:35431-35450 None:intergenic 35.0%
ATGTTAACAGGAAATTCAGG+CGG - tig0020490:35483-35502 Msa1382100:intron 35.0%
CTTCTAATTACAGAGTCGAT+GGG + tig0020490:35844-35863 None:intergenic 35.0%
ACTTCTAATTACAGAGTCGA+TGG + tig0020490:35845-35864 None:intergenic 35.0%
GTACCATCCCTTATTGTATA+TGG - tig0020490:35865-35884 Msa1382100:CDS 35.0%
GTTCCATATACAATAAGGGA+TGG + tig0020490:35871-35890 None:intergenic 35.0%
! CAAGTCTTGTAGTTGCTTCT+TGG - tig0020490:30155-30174 Msa1382100:intron 40.0%
! TTGGGAAACCCAGCTAATTT+TGG - tig0020490:30461-30480 Msa1382100:intron 40.0%
! TGGGAAACCCAGCTAATTTT+GGG - tig0020490:30462-30481 Msa1382100:intron 40.0%
GATTGGTACCCAAAATTAGC+TGG + tig0020490:30473-30492 None:intergenic 40.0%
TCAATTAGGCCTCTAGTTGA+TGG + tig0020490:30499-30518 None:intergenic 40.0%
GCGCCAACAATTCTTGTATT+GGG + tig0020490:30551-30570 None:intergenic 40.0%
TGCGCCAACAATTCTTGTAT+TGG + tig0020490:30552-30571 None:intergenic 40.0%
ATACAAGAATTGTTGGCGCA+TGG - tig0020490:30552-30571 Msa1382100:intron 40.0%
TACAAGAATTGTTGGCGCAT+GGG - tig0020490:30553-30572 Msa1382100:intron 40.0%
TGTCGAACATGTGTCAATGT+CGG + tig0020490:31004-31023 None:intergenic 40.0%
ATTGACACATGTTCGACAGT+GGG - tig0020490:31006-31025 Msa1382100:intron 40.0%
GCACAGATACTATTCGGATT+AGG + tig0020490:31037-31056 None:intergenic 40.0%
CAATTGTGGTCGCACTTTAA+AGG + tig0020490:31088-31107 None:intergenic 40.0%
TTGTCAATCTCCACATGCAT+TGG + tig0020490:31156-31175 None:intergenic 40.0%
GTTCTCCAACACATACGAAA+TGG - tig0020490:31225-31244 Msa1382100:intron 40.0%
TGAGGATGAAGATGCAAAAG+TGG - tig0020490:31376-31395 Msa1382100:CDS 40.0%
GATGAAGATGCAAAAGTGGA+AGG - tig0020490:31380-31399 Msa1382100:CDS 40.0%
! ACGACGCTTTAGATTAAGGT+TGG - tig0020490:31550-31569 Msa1382100:intron 40.0%
! GCTTTAGATTAAGGTTGGTC+CGG - tig0020490:31555-31574 Msa1382100:intron 40.0%
CAACGATATGTTTCGAACAC+CGG + tig0020490:31577-31596 None:intergenic 40.0%
TTGAGTGTAACCACATGTGT+CGG + tig0020490:31618-31637 None:intergenic 40.0%
TGCATACGTGCCTTACATTT+AGG + tig0020490:31843-31862 None:intergenic 40.0%
AAACTAGCTACCGATACTAG+TGG - tig0020490:32013-32032 Msa1382100:intron 40.0%
!! GTTTTCCTAGTTGATGCCAA+TGG - tig0020490:32141-32160 Msa1382100:intron 40.0%
TATTCCCATTGGCATCAACT+AGG + tig0020490:32149-32168 None:intergenic 40.0%
CCTGGAAAAGTTATTCCCAT+TGG + tig0020490:32160-32179 None:intergenic 40.0%
! CCAATGGGAATAACTTTTCC+AGG - tig0020490:32157-32176 Msa1382100:intron 40.0%
! GGAATAACTTTTCCAGGGAA+GGG - tig0020490:32163-32182 Msa1382100:intron 40.0%
TCCAGGGAAGGGAAAATAAT+TGG - tig0020490:32174-32193 Msa1382100:intron 40.0%
CCAGGGAAGGGAAAATAATT+GGG - tig0020490:32175-32194 Msa1382100:intron 40.0%
!! GGCATGTTATGGTAATGGAT+TGG + tig0020490:32350-32369 None:intergenic 40.0%
CTATCTACACTTAGTGTAGC+TGG - tig0020490:32594-32613 Msa1382100:intron 40.0%
ATCGAAAGACCCTAGTAAGT+TGG - tig0020490:33059-33078 Msa1382100:intron 40.0%
GATAATTTAGGAGGAAACCC+TGG - tig0020490:33232-33251 Msa1382100:intron 40.0%
TAATATGACGAGGAGAAGAG+GGG - tig0020490:33348-33367 Msa1382100:intron 40.0%
TAGCTGATGCAACTGTACTA+TGG - tig0020490:33463-33482 Msa1382100:intron 40.0%
AGAATACAGAATGGCAGATC+CGG + tig0020490:33513-33532 None:intergenic 40.0%
! TGGAAGGGAACACATTTTCA+TGG - tig0020490:33752-33771 Msa1382100:CDS 40.0%
TTAGACAGGTTAGAAGGACA+GGG + tig0020490:33904-33923 None:intergenic 40.0%
TTTGCCATTGGGAATCCTTA+TGG - tig0020490:34214-34233 Msa1382100:intron 40.0%
TGAGAATACTCTCACAACAG+GGG - tig0020490:34240-34259 Msa1382100:intron 40.0%
AGAGTTCTTAGCAGATTCAG+AGG + tig0020490:34316-34335 None:intergenic 40.0%
TGCGATGTAAATTATGCAGG+TGG - tig0020490:34497-34516 Msa1382100:intron 40.0%
TAAATTATGCAGGTGGTCAG+TGG - tig0020490:34504-34523 Msa1382100:intron 40.0%
ACTGATGCAGCTATTAATGC+AGG - tig0020490:34582-34601 Msa1382100:CDS 40.0%
CCAACAAATGCTTGGTATTG+AGG + tig0020490:34645-34664 None:intergenic 40.0%
CCTCAATACCAAGCATTTGT+TGG - tig0020490:34642-34661 Msa1382100:CDS 40.0%
GACGATTATTGTGGGTCAAA+GGG + tig0020490:34708-34727 None:intergenic 40.0%
GTCAAATGCGACGATTATTG+TGG + tig0020490:34717-34736 None:intergenic 40.0%
!! CGCAAGCTTTGTTTGGTAAA+AGG - tig0020490:34873-34892 Msa1382100:intron 40.0%
!! AAGGTAGCGGATAGTTAACA+AGG - tig0020490:34892-34911 Msa1382100:intron 40.0%
CGGATGTTAACAGGAAATTC+AGG - tig0020490:35480-35499 Msa1382100:intron 40.0%
CTGTGTTTACTCCAACAACA+TGG + tig0020490:35530-35549 None:intergenic 40.0%
ATTACCTTTCCTTGTGAAGG+TGG + tig0020490:35553-35572 None:intergenic 40.0%
GAGAGGGAAAGAGGTTCATT+TGG + tig0020490:30051-30070 None:intergenic 45.0%
! TGAGTAGTTAGCGTTGGAGA+GGG + tig0020490:30067-30086 None:intergenic 45.0%
! ATGAGTAGTTAGCGTTGGAG+AGG + tig0020490:30068-30087 None:intergenic 45.0%
GAGGAATGAGTAGTTAGCGT+TGG + tig0020490:30073-30092 None:intergenic 45.0%
CTTAGTAGCTGTAACAGTGG+TGG + tig0020490:30113-30132 None:intergenic 45.0%
TCGCTTAGTAGCTGTAACAG+TGG + tig0020490:30116-30135 None:intergenic 45.0%
CCTGAAACAAATGCACAAGG+TGG + tig0020490:30261-30280 None:intergenic 45.0%
CCACCTTGTGCATTTGTTTC+AGG - tig0020490:30258-30277 Msa1382100:intron 45.0%
!! CCTCTAGTTGATGGTGAGAT+TGG + tig0020490:30490-30509 None:intergenic 45.0%
CCAATCTCACCATCAACTAG+AGG - tig0020490:30487-30506 Msa1382100:intron 45.0%
! TGCGCTCTTTTCTAGGTCTT+AGG + tig0020490:30588-30607 None:intergenic 45.0%
CATGAACTAAACCCTAGGGT+TGG + tig0020490:30640-30659 None:intergenic 45.0%
TGTCTGTGACCGTGTTTCAT+AGG + tig0020490:30901-30920 None:intergenic 45.0%
ATGAAACACGGTCACAGACA+TGG - tig0020490:30901-30920 Msa1382100:intron 45.0%
GTCACAGACATGGAAAGACA+CGG - tig0020490:30911-30930 Msa1382100:intron 45.0%
CATTGACACATGTTCGACAG+TGG - tig0020490:31005-31024 Msa1382100:intron 45.0%
!! CACTGGTTCAGGCTTCATTT+GGG - tig0020490:31403-31422 Msa1382100:CDS 45.0%
!! GTCGGTGTTGTGTTAATGTC+TGG + tig0020490:31600-31619 None:intergenic 45.0%
TAACACAACACCGACACATG+TGG - tig0020490:31605-31624 Msa1382100:intron 45.0%
! GGGAATAACTTTTCCAGGGA+AGG - tig0020490:32162-32181 Msa1382100:intron 45.0%
! CCCAATTATTTTCCCTTCCC+TGG + tig0020490:32178-32197 None:intergenic 45.0%
CTTACTGGGACAGAATAGGA+GGG + tig0020490:33131-33150 None:intergenic 45.0%
TCTTACTGGGACAGAATAGG+AGG + tig0020490:33132-33151 None:intergenic 45.0%
GACACGACCAAATGAGCTAA+CGG - tig0020490:33274-33293 Msa1382100:intron 45.0%
ACACGACCAAATGAGCTAAC+GGG - tig0020490:33275-33294 Msa1382100:intron 45.0%
ATATTAAAAGGGCCCAGGTG+TGG + tig0020490:33334-33353 None:intergenic 45.0%
TCGTCATATTAAAAGGGCCC+AGG + tig0020490:33339-33358 None:intergenic 45.0%
! TGGGCCCTTTTAATATGACG+AGG - tig0020490:33338-33357 Msa1382100:intron 45.0%
ATTCTTGGACGGAGCAAATG+AGG + tig0020490:33410-33429 None:intergenic 45.0%
CTGATGCAACTGTACTATGG+TGG - tig0020490:33466-33485 Msa1382100:intron 45.0%
! AGCTTCTAGAAGAGTAGACC+AGG + tig0020490:33584-33603 None:intergenic 45.0%
! TGGTCTACTCTTCTAGAAGC+TGG - tig0020490:33583-33602 Msa1382100:intron 45.0%
GTTAGACAGGTTAGAAGGAC+AGG + tig0020490:33905-33924 None:intergenic 45.0%
! GACAGAGTTGCTTTGCCATT+GGG - tig0020490:34203-34222 Msa1382100:intron 45.0%
AGATACCTTCCCCAAATGGA+GGG - tig0020490:34538-34557 Msa1382100:CDS 45.0%
! TTTGATAGCCCCTCCATTTG+GGG + tig0020490:34550-34569 None:intergenic 45.0%
! CTTTGATAGCCCCTCCATTT+GGG + tig0020490:34551-34570 None:intergenic 45.0%
GCAACAAGCCAACAAATGCT+TGG + tig0020490:34653-34672 None:intergenic 45.0%
!! TTTGTTGGCTTGTTGCCCTA+TGG - tig0020490:34657-34676 Msa1382100:intron 45.0%
CGACGATTATTGTGGGTCAA+AGG + tig0020490:34709-34728 None:intergenic 45.0%
GGCAAAAGTAAAGTGACCGT+TGG + tig0020490:35356-35375 None:intergenic 45.0%
TATGATCTTGTGTTCGCGCA+CGG - tig0020490:35460-35479 Msa1382100:intron 45.0%
! GGACCATTGATTGACTCTCA+TGG - tig0020490:35504-35523 Msa1382100:intron 45.0%
TGGCCATGAGAGTCAATCAA+TGG + tig0020490:35510-35529 None:intergenic 45.0%
TAAACACAGCCACCTTCACA+AGG - tig0020490:35541-35560 Msa1382100:intron 45.0%
GTTAACTCCTGATGAAGCTC+CGG + tig0020490:35812-35831 None:intergenic 45.0%
! TTAGCGTTGGAGAGGGAAAG+AGG + tig0020490:30060-30079 None:intergenic 50.0%
!! TGTAACAGTGGTGGTGGGAA+GGG + tig0020490:30104-30123 None:intergenic 50.0%
GTAGCTGTAACAGTGGTGGT+GGG + tig0020490:30109-30128 None:intergenic 50.0%
AGTAGCTGTAACAGTGGTGG+TGG + tig0020490:30110-30129 None:intergenic 50.0%
!! CAAGGAGTGCGCTCTTTTCT+AGG + tig0020490:30595-30614 None:intergenic 50.0%
! CTAGAAAAGAGCGCACTCCT+TGG - tig0020490:30593-30612 Msa1382100:intron 50.0%
GGGGCAAATGCAAGCAAATG+CGG - tig0020490:30849-30868 Msa1382100:intron 50.0%
CAACTACAATTGTGGCCGAC+TGG + tig0020490:30875-30894 None:intergenic 50.0%
GTCGCTTGCAACTGCAATTG+TGG + tig0020490:31102-31121 None:intergenic 50.0%
! GATGCAAAAGTGGAAGGCAC+TGG - tig0020490:31386-31405 Msa1382100:CDS 50.0%
!! AAAGTGGAAGGCACTGGTTC+AGG - tig0020490:31392-31411 Msa1382100:CDS 50.0%
!! GCACTGGTTCAGGCTTCATT+TGG - tig0020490:31402-31421 Msa1382100:CDS 50.0%
!! TGGAGCACTGACACGTATAC+AGG + tig0020490:31704-31723 None:intergenic 50.0%
CACGACCAAATGAGCTAACG+GGG - tig0020490:33276-33295 Msa1382100:intron 50.0%
ACGACCAAATGAGCTAACGG+GGG - tig0020490:33277-33296 Msa1382100:intron 50.0%
AAACCCCCCGTTAGCTCATT+TGG + tig0020490:33284-33303 None:intergenic 50.0%
GGACGAGTCTCCTTGAAAAG+AGG + tig0020490:33313-33332 None:intergenic 50.0%
AGTGACATGGAAGCCACATG+TGG + tig0020490:33377-33396 None:intergenic 50.0%
AGGTGTAGCGTCAAGTGACA+TGG + tig0020490:33390-33409 None:intergenic 50.0%
ACAGGTTAGAAGGACAGGGA+TGG + tig0020490:33900-33919 None:intergenic 50.0%
! GGACAGAGTTGCTTTGCCAT+TGG - tig0020490:34202-34221 Msa1382100:intron 50.0%
ATGCAGGTGGTCAGTGGTTT+AGG - tig0020490:34510-34529 Msa1382100:intron 50.0%
!! CATTTGGGGAAGGTATCTCG+CGG + tig0020490:34536-34555 None:intergenic 50.0%
GAGATACCTTCCCCAAATGG+AGG - tig0020490:34537-34556 Msa1382100:CDS 50.0%
GATACCTTCCCCAAATGGAG+GGG - tig0020490:34539-34558 Msa1382100:CDS 50.0%
! CCTTTGATAGCCCCTCCATT+TGG + tig0020490:34552-34571 None:intergenic 50.0%
CCAAATGGAGGGGCTATCAA+AGG - tig0020490:34549-34568 Msa1382100:CDS 50.0%
!! CGATGCACGCAAGCTTTGTT+TGG - tig0020490:34866-34885 Msa1382100:intron 50.0%
GACTCTCATGGCCATGTTGT+TGG - tig0020490:35516-35535 Msa1382100:intron 50.0%
ACAGCCACCTTCACAAGGAA+AGG - tig0020490:35546-35565 Msa1382100:intron 50.0%
GGTGGGAAGGGTCTTTGTTG+AGG + tig0020490:30092-30111 None:intergenic 55.0%
!! CTGTAACAGTGGTGGTGGGA+AGG + tig0020490:30105-30124 None:intergenic 55.0%
!! ACTAAACCCTAGGGTTGGCC+TGG + tig0020490:30635-30654 None:intergenic 55.0%
TGCAAGCAAATGCGGCCAGT+CGG - tig0020490:30857-30876 Msa1382100:intron 55.0%
GTGGTGACAGCTCACAACCA+GGG + tig0020490:33252-33271 None:intergenic 55.0%
GCTCATTTGGTCGTGTCACG+TGG + tig0020490:33271-33290 None:intergenic 55.0%
CGACCAAATGAGCTAACGGG+GGG - tig0020490:33278-33297 Msa1382100:intron 55.0%
AAGGAGACTCGTCCACACCT+GGG - tig0020490:33319-33338 Msa1382100:intron 55.0%
GACATGGAAGCCACATGTGG+CGG + tig0020490:33374-33393 None:intergenic 55.0%
CGCGAGATACCTTCCCCAAA+TGG - tig0020490:34534-34553 Msa1382100:CDS 55.0%
ATAGCCCCTCCATTTGGGGA+AGG + tig0020490:34546-34565 None:intergenic 55.0%
GTTCGCGCACGGATGTTAAC+AGG - tig0020490:35471-35490 Msa1382100:intron 55.0%
!! TCAGGTACCGGAGCTTCATC+AGG - tig0020490:35802-35821 Msa1382100:CDS 55.0%
GTGGTGAAGGCTTGGGACCA+AGG + tig0020490:30613-30632 None:intergenic 60.0%
! TGGCCTGGTGGTGAAGGCTT+GGG + tig0020490:30620-30639 None:intergenic 60.0%
! TTGGCCTGGTGGTGAAGGCT+TGG + tig0020490:30621-30640 None:intergenic 60.0%
!! TAGGGTTGGCCTGGTGGTGA+AGG + tig0020490:30626-30645 None:intergenic 60.0%
TTCACCACCAGGCCAACCCT+AGG - tig0020490:30625-30644 Msa1382100:intron 60.0%
TCACCACCAGGCCAACCCTA+GGG - tig0020490:30626-30645 Msa1382100:intron 60.0%
!! AAACCCTAGGGTTGGCCTGG+TGG + tig0020490:30632-30651 None:intergenic 60.0%
CGTGGTGACAGCTCACAACC+AGG + tig0020490:33253-33272 None:intergenic 60.0%
CAAGGAGACTCGTCCACACC+TGG - tig0020490:33318-33337 Msa1382100:intron 60.0%
GGTCCCAAGCCTTCACCACC+AGG - tig0020490:30614-30633 Msa1382100:intron 65.0%
AGAAGAGGGGCCGCCACATG+TGG - tig0020490:33361-33380 Msa1382100:intron 65.0%
Chromosome Type Strat End Strand Name
tig0020490 gene 29920 36037 29920 ID=Msa1382100;Name=Msa1382100
tig0020490 mRNA 29920 36037 29920 ID=Msa1382100-mRNA-1;Parent=Msa1382100;Name=Msa1382100-mRNA-1;_AED=0.27;_eAED=0.27;_QI=90|1|1|1|1|1|8|125|321
tig0020490 exon 29920 30151 29920 ID=Msa1382100-mRNA-1:exon:7982;Parent=Msa1382100-mRNA-1
tig0020490 exon 30390 30464 30390 ID=Msa1382100-mRNA-1:exon:7981;Parent=Msa1382100-mRNA-1
tig0020490 exon 31354 31441 31354 ID=Msa1382100-mRNA-1:exon:7980;Parent=Msa1382100-mRNA-1
tig0020490 exon 31696 31818 31696 ID=Msa1382100-mRNA-1:exon:7979;Parent=Msa1382100-mRNA-1
tig0020490 exon 33727 33816 33727 ID=Msa1382100-mRNA-1:exon:7978;Parent=Msa1382100-mRNA-1
tig0020490 exon 33906 33968 33906 ID=Msa1382100-mRNA-1:exon:7977;Parent=Msa1382100-mRNA-1
tig0020490 exon 34515 34664 34515 ID=Msa1382100-mRNA-1:exon:7976;Parent=Msa1382100-mRNA-1
tig0020490 exon 35678 36037 35678 ID=Msa1382100-mRNA-1:exon:7975;Parent=Msa1382100-mRNA-1
tig0020490 five_prime_UTR 35948 36037 35948 ID=Msa1382100-mRNA-1:five_prime_utr;Parent=Msa1382100-mRNA-1
tig0020490 CDS 35678 35947 35678 ID=Msa1382100-mRNA-1:cds;Parent=Msa1382100-mRNA-1
tig0020490 CDS 34515 34664 34515 ID=Msa1382100-mRNA-1:cds;Parent=Msa1382100-mRNA-1
tig0020490 CDS 33906 33968 33906 ID=Msa1382100-mRNA-1:cds;Parent=Msa1382100-mRNA-1
tig0020490 CDS 33727 33816 33727 ID=Msa1382100-mRNA-1:cds;Parent=Msa1382100-mRNA-1
tig0020490 CDS 31696 31818 31696 ID=Msa1382100-mRNA-1:cds;Parent=Msa1382100-mRNA-1
tig0020490 CDS 31354 31441 31354 ID=Msa1382100-mRNA-1:cds;Parent=Msa1382100-mRNA-1
tig0020490 CDS 30390 30464 30390 ID=Msa1382100-mRNA-1:cds;Parent=Msa1382100-mRNA-1
tig0020490 CDS 30045 30151 30045 ID=Msa1382100-mRNA-1:cds;Parent=Msa1382100-mRNA-1
tig0020490 three_prime_UTR 29920 30044 29920 ID=Msa1382100-mRNA-1:three_prime_utr;Parent=Msa1382100-mRNA-1
Gene Sequence

>Msa1382100

ATGGTTGCAACAAAACCAATCATCACAATGTTTTCTCTCCAAATGAACCTCTTTCCCTCTCCAACGCTAACTACTCATTCCTCAACAAAGACCCTTCCCACCACCACTGTTACAGCTACTAAGCGAAGAGCCATAGTCTTCAGTTCAAGTCTTGTAGTTGCTTCTTGGCTTAATTTCCTTAATTTCAATTCAACACAACCACTTTCACTTTCACAACAACTACAAGATGAACTTCAACAACAAGAAGACCACCTTGTGCATTTGTTTCAGGAAACTTCACCATCTGTTGTTTCCATTAAAGACATTGAATTGACTAAAGTCCCCAAAACCTCTTCTAATGAAGTCATGCTAGATGAGGATGAAGATGCAAAAGTGGAAGGCACTGGTTCAGGCTTCATTTGGGATAAATTTGGCCACATAGTTACCAATTACCATGTTGTAGCTAAACTAGCTACCGATACTAGTGGTTTACAACGTTGTAAGGTTTTCCTAGTTGATGCCAATGGGAATAACTTTTCCAGGGAAGGGAAAATAATTGGGTTTGATCCATCATATGATCTAGCTGTTCTGAAGGTTGATGTTGATGGATACGAAATAAAGCCTGTTGTTATTGGTGAATCTAAGAATTTACATGTTGGACAGAGTTGCTTTGCCATTGGGAATCCTTATGGATATGAGAATACTCTCACAACAGGGGTGGTCAGTGGTTTAGGCCGCGAGATACCTTCCCCAAATGGAGGGGCTATCAAAGGAGCTATTCAAACTGATGCAGCTATTAATGCAGGAAATTCAGGCGGACCATTGATTGACTCTCATGGCCATGTTGTTGGAGTAAACACAGCCACCTTCACAAGGAAAGGTACCGGAGCTTCATCAGGAGTTAACTTTGCAATTCCCATCGACTCTGTAATTAGAAGTGTACCATCCCTTATTGTATATGGAACACCTTATACTAATAGGTTTTGA

Protein sequence

>Msa1382100

MVATKPIITMFSLQMNLFPSPTLTTHSSTKTLPTTTVTATKRRAIVFSSSLVVASWLNFLNFNSTQPLSLSQQLQDELQQQEDHLVHLFQETSPSVVSIKDIELTKVPKTSSNEVMLDEDEDAKVEGTGSGFIWDKFGHIVTNYHVVAKLATDTSGLQRCKVFLVDANGNNFSREGKIIGFDPSYDLAVLKVDVDGYEIKPVVIGESKNLHVGQSCFAIGNPYGYENTLTTGVVSGLGREIPSPNGGAIKGAIQTDAAINAGNSGGPLIDSHGHVVGVNTATFTRKGTGASSGVNFAIPIDSVIRSVPSLIVYGTPYTNRF*