Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1017280 | 0.837650 | 4.585455e-57 | -8.615850e-47 |
| Msa0110970 | Msa1017280 | 0.800401 | 1.466128e-48 | -8.615850e-47 |
| Msa0669320 | Msa1017280 | 0.814578 | 1.434723e-51 | -8.615850e-47 |
| Msa0743720 | Msa1017280 | 0.800574 | 1.351937e-48 | -8.615850e-47 |
| Msa0806660 | Msa1017280 | 0.812231 | 4.705648e-51 | -8.615850e-47 |
| Msa0822870 | Msa1017280 | 0.806414 | 8.321552e-50 | -8.615850e-47 |
| Msa0157290 | Msa1017280 | 0.836592 | 8.550888e-57 | -8.615850e-47 |
| Msa0166560 | Msa1017280 | 0.832031 | 1.191923e-55 | -8.615850e-47 |
| Msa0480980 | Msa1017280 | 0.800782 | 1.226383e-48 | -8.615850e-47 |
| Msa1014540 | Msa1017280 | 0.801337 | 9.443636e-49 | -8.615850e-47 |
| Msa1017280 | Msa1264020 | 0.804792 | 1.822534e-49 | -8.615850e-47 |
| Msa1017280 | Msa1367080 | 0.803459 | 3.450515e-49 | -8.615850e-47 |
| Msa0287650 | Msa1017280 | 0.800464 | 1.423841e-48 | -8.615850e-47 |
| Msa0321310 | Msa1017280 | 0.810182 | 1.309086e-50 | -8.615850e-47 |
| Msa0594660 | Msa1017280 | 0.804622 | 1.977565e-49 | -8.615850e-47 |
| Msa0871270 | Msa1017280 | 0.813793 | 2.137721e-51 | -8.615850e-47 |
| Msa0880140 | Msa1017280 | 0.834563 | 2.787477e-56 | -8.615850e-47 |
| Msa0936300 | Msa1017280 | 0.800517 | 1.388455e-48 | -8.615850e-47 |
| Msa0938220 | Msa1017280 | 0.803155 | 3.990251e-49 | -8.615850e-47 |
| Msa0947660 | Msa1017280 | 0.817259 | 3.618143e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCGTCTCTTATAGTTTCT+TGG | 0.240519 | 7_1:+36278411 | Msa1017280:intron |
| AGAAGTTGGAGCACCCCTTT+TGG | 0.326100 | 7_1:+36278442 | Msa1017280:CDS |
| TACACATAACCTTCAACTTC+AGG | 0.373738 | 7_1:+36277111 | Msa1017280:CDS |
| AGCGCGGCAGCGGCGAATTC+CGG | 0.386415 | 7_1:-36276922 | None:intergenic |
| GGACTTGATGATGTTGCTAT+TGG | 0.393107 | 7_1:+36280908 | Msa1017280:CDS |
| GGGAGATGTTACTATTGAAA+AGG | 0.401370 | 7_1:+36280880 | Msa1017280:CDS |
| TCTTCATTTCCGATCAAATC+CGG | 0.421903 | 7_1:+36276794 | Msa1017280:five_prime_UTR |
| GGAATTCGCCGCTGCCGCGC+TGG | 0.425989 | 7_1:+36276924 | Msa1017280:five_prime_UTR |
| AGAATCATACCTGAAGTTGA+AGG | 0.459562 | 7_1:-36277120 | None:intergenic |
| GAATTCCGGTACGGTGGTCG+AGG | 0.475420 | 7_1:-36276908 | None:intergenic |
| ATGTAGGAATTGACCATTGA+GGG | 0.476949 | 7_1:+36280860 | Msa1017280:intron |
| AACACCCTCGACCACCGTAC+CGG | 0.483243 | 7_1:+36276903 | Msa1017280:five_prime_UTR |
| GAAGGTTATGTGTACAATCC+TGG | 0.485804 | 7_1:-36277102 | None:intergenic |
| GTTACTATTGAAAAGGGAAC+CGG | 0.487342 | 7_1:+36280887 | Msa1017280:CDS |
| ATATTAACAAATAACCTTTG+AGG | 0.490332 | 7_1:-36276986 | None:intergenic |
| GGAGATGTTACTATTGAAAA+GGG | 0.498171 | 7_1:+36280881 | Msa1017280:CDS |
| TTTCATTAAGATTTCCTCAA+AGG | 0.508819 | 7_1:+36276972 | Msa1017280:five_prime_UTR |
| CGTGAGAGTGGGTATTGAGT+TGG | 0.513423 | 7_1:-36276727 | None:intergenic |
| TTGTAACTCCAGCGCGGCAG+CGG | 0.522576 | 7_1:-36276932 | None:intergenic |
| AATAGTAACATCTCCCTCAA+TGG | 0.524956 | 7_1:-36280873 | None:intergenic |
| ATCTTAATGAAAATAAAAGA+AGG | 0.530127 | 7_1:-36276961 | None:intergenic |
| GATGATGTTGCTATTGGAAA+GGG | 0.535356 | 7_1:+36280914 | Msa1017280:CDS |
| TGATCGGAAATGAAGAAAGA+AGG | 0.536790 | 7_1:-36276787 | None:intergenic |
| AATAGCAACATCATCAAGTC+CGG | 0.544968 | 7_1:-36280906 | None:intergenic |
| ATGAGGAGGCCGGATTTGAT+CGG | 0.545363 | 7_1:-36276803 | None:intergenic |
| GTTGCTATTGGAAAGGGAGC+TGG | 0.556792 | 7_1:+36280920 | Msa1017280:CDS |
| AAGTGGCTCTCATGATGAGA+AGG | 0.558479 | 7_1:+36280970 | Msa1017280:CDS |
| GGAGGAGGTCTACGTGAGAG+TGG | 0.574822 | 7_1:-36276739 | None:intergenic |
| TTTCATATTCATAGTCAATG+TGG | 0.578369 | 7_1:+36278581 | Msa1017280:intron |
| TGATTAGAGGAAGACGATGG+TGG | 0.578466 | 7_1:-36276838 | None:intergenic |
| GGCAGCGGCGAATTCCGGTA+CGG | 0.582148 | 7_1:-36276917 | None:intergenic |
| ATGGGTTTCATGAATGGAGG+AGG | 0.590645 | 7_1:-36276754 | None:intergenic |
| TGATGATGTTGCTATTGGAA+AGG | 0.600982 | 7_1:+36280913 | Msa1017280:CDS |
| AATTCCGGTACGGTGGTCGA+GGG | 0.606053 | 7_1:-36276907 | None:intergenic |
| TAGAGAGGCAATCAAACTGA+AGG | 0.606950 | 7_1:+36279497 | Msa1017280:CDS |
| GAGGAGGTCTACGTGAGAGT+GGG | 0.618564 | 7_1:-36276738 | None:intergenic |
| TCAAGTAAATGACATTAGAG+AGG | 0.638231 | 7_1:+36279482 | Msa1017280:CDS |
| AAAATGGGTTTCATGAATGG+AGG | 0.642245 | 7_1:-36276757 | None:intergenic |
| TATTGGAAAGGGAGCTGGAG+TGG | 0.647582 | 7_1:+36280925 | Msa1017280:CDS |
| GGATGATTAGAGGAAGACGA+TGG | 0.651402 | 7_1:-36276841 | None:intergenic |
| AGCGGCGAATTCCGGTACGG+TGG | 0.667874 | 7_1:-36276914 | None:intergenic |
| GGAGCTGGAGTGGATGATGT+TGG | 0.670109 | 7_1:+36280935 | Msa1017280:CDS |
| TATGTAGGAATTGACCATTG+AGG | 0.676314 | 7_1:+36280859 | Msa1017280:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTTGTTTAAACTA+TGG | + | chr7_1:36277524-36277543 | Msa1017280:intron | 10.0% |
| !!! | AATATTATTATTTTGAAAAC+AGG | - | chr7_1:36278147-36278166 | None:intergenic | 10.0% |
| !! | ATAATAATATTTGAATGATA+TGG | + | chr7_1:36278156-36278175 | Msa1017280:intron | 10.0% |
| !!! | TTTTTTACTAATTTTTCATT+TGG | + | chr7_1:36278509-36278528 | Msa1017280:intron | 10.0% |
| !!! | TTTTTACTAATTTTTCATTT+GGG | + | chr7_1:36278510-36278529 | Msa1017280:intron | 10.0% |
| !!! | TATGCAAATATTTAAATTTT+TGG | - | chr7_1:36280057-36280076 | None:intergenic | 10.0% |
| !! | ATCTTAATGAAAATAAAAGA+AGG | - | chr7_1:36276964-36276983 | None:intergenic | 15.0% |
| !! | TTTAATATGAATGTTCAAAA+AGG | + | chr7_1:36277246-36277265 | Msa1017280:intron | 15.0% |
| !! | TTAATATGAATGTTCAAAAA+GGG | + | chr7_1:36277247-36277266 | Msa1017280:intron | 15.0% |
| !!! | GTTTTGTATTGTTTAAATAA+TGG | + | chr7_1:36277286-36277305 | Msa1017280:intron | 15.0% |
| !!! | ATTGTTTAAATAATGGATTA+TGG | + | chr7_1:36277293-36277312 | Msa1017280:intron | 15.0% |
| !!! | CAAATTTCTAATTCTTTTTT+TGG | + | chr7_1:36277321-36277340 | Msa1017280:intron | 15.0% |
| !!! | GATTTGATTAGATTAAATTT+TGG | + | chr7_1:36278644-36278663 | Msa1017280:intron | 15.0% |
| !!! | ATAATCATGATTTTTAATCA+TGG | + | chr7_1:36279521-36279540 | Msa1017280:intron | 15.0% |
| !!! | TTTATTGTTAAACTACTTTT+TGG | + | chr7_1:36279551-36279570 | Msa1017280:intron | 15.0% |
| !!! | TGTAAATTGTTAATTTTTCT+AGG | - | chr7_1:36279824-36279843 | None:intergenic | 15.0% |
| !!! | TATGAATATTTTGCTATAAA+AGG | + | chr7_1:36280145-36280164 | Msa1017280:intron | 15.0% |
| !!! | ATGAATATTTTGCTATAAAA+GGG | + | chr7_1:36280146-36280165 | Msa1017280:intron | 15.0% |
| !!! | TCAATTTTTTTAGAGTATTA+TGG | + | chr7_1:36280517-36280536 | Msa1017280:intron | 15.0% |
| !! | ATATTAACAAATAACCTTTG+AGG | - | chr7_1:36276989-36277008 | None:intergenic | 20.0% |
| !!! | TACTTGATTAGTTGATTATT+TGG | + | chr7_1:36277809-36277828 | Msa1017280:intron | 20.0% |
| !! | TTATTTGTTTATCCAAATAG+TGG | + | chr7_1:36277862-36277881 | Msa1017280:intron | 20.0% |
| !!! | ATAAAGTTGTGTTACTTTTT+GGG | - | chr7_1:36277959-36277978 | None:intergenic | 20.0% |
| !!! | TATAAAGTTGTGTTACTTTT+TGG | - | chr7_1:36277960-36277979 | None:intergenic | 20.0% |
| !! | AAGTAACACAACTTTATATT+AGG | + | chr7_1:36277962-36277981 | Msa1017280:intron | 20.0% |
| !! | ATTGGTTAAGTTTGATAAAT+TGG | + | chr7_1:36278547-36278566 | Msa1017280:intron | 20.0% |
| !! | TTGGTTAAGTTTGATAAATT+GGG | + | chr7_1:36278548-36278567 | Msa1017280:intron | 20.0% |
| !!! | GTTCATATTTTGCATATATT+TGG | + | chr7_1:36278984-36279003 | Msa1017280:intron | 20.0% |
| !!! | TATTTGGAACTTTTAATGAT+CGG | + | chr7_1:36279000-36279019 | Msa1017280:intron | 20.0% |
| !! | TTTATTCAATTGTTAATCTC+TGG | + | chr7_1:36279417-36279436 | Msa1017280:intron | 20.0% |
| !! | TTATATAGTTTACATTTGTG+TGG | + | chr7_1:36279584-36279603 | Msa1017280:intron | 20.0% |
| !!! | CTATATGCATAGATTTTTTT+TGG | - | chr7_1:36279648-36279667 | None:intergenic | 20.0% |
| !!! | AATTTATTTAGCCTTTTCTT+TGG | + | chr7_1:36280573-36280592 | Msa1017280:intron | 20.0% |
| !! | AATCATCAATTTGAATAGAT+AGG | - | chr7_1:36280804-36280823 | None:intergenic | 20.0% |
| !! | ATATCTTGTTACAAATCAAA+AGG | - | chr7_1:36281006-36281025 | None:intergenic | 20.0% |
| ! | TTTCATTAAGATTTCCTCAA+AGG | + | chr7_1:36276972-36276991 | Msa1017280:five_prime_UTR | 25.0% |
| ! | GAAACATATGTTAATATTGC+AGG | - | chr7_1:36277039-36277058 | None:intergenic | 25.0% |
| !! | AATCAGAGGGTAATAATTTT+AGG | - | chr7_1:36277209-36277228 | None:intergenic | 25.0% |
| !!! | CTAATTCTTTTTTTGGTGTT+AGG | + | chr7_1:36277328-36277347 | Msa1017280:intron | 25.0% |
| ! | AAAGAAGCTAATGAACAAAT+TGG | + | chr7_1:36277395-36277414 | Msa1017280:intron | 25.0% |
| ! | AAGAAGCTAATGAACAAATT+GGG | + | chr7_1:36277396-36277415 | Msa1017280:intron | 25.0% |
| ! | ACACTATATAAACCACTATT+TGG | - | chr7_1:36277877-36277896 | None:intergenic | 25.0% |
| ! | ATGTCATAAACACAACTATT+TGG | + | chr7_1:36277999-36278018 | Msa1017280:intron | 25.0% |
| ! | TAAATTCGTACATCCTAATT+GGG | - | chr7_1:36278090-36278109 | None:intergenic | 25.0% |
| ! | CTATCTAGCATGATTTAAAA+TGG | + | chr7_1:36278291-36278310 | Msa1017280:intron | 25.0% |
| ! | TTTCATATTCATAGTCAATG+TGG | + | chr7_1:36278581-36278600 | Msa1017280:intron | 25.0% |
| ! | ACCAAAAAATGAAGTGATTA+GGG | - | chr7_1:36278690-36278709 | None:intergenic | 25.0% |
| ! | AACCAAAAAATGAAGTGATT+AGG | - | chr7_1:36278691-36278710 | None:intergenic | 25.0% |
| !! | TGATAACATGCATTTTAGAT+AGG | + | chr7_1:36278745-36278764 | Msa1017280:intron | 25.0% |
| ! | ACAAAAGAATGAAATGAGAA+AGG | - | chr7_1:36278798-36278817 | None:intergenic | 25.0% |
| ! | TAAACAAAAGCAAATGAGAA+AGG | - | chr7_1:36278872-36278891 | None:intergenic | 25.0% |
| ! | TATGTAAATTAGATCGTAGA+TGG | + | chr7_1:36279090-36279109 | Msa1017280:intron | 25.0% |
| ! | ATGTAAATTAGATCGTAGAT+GGG | + | chr7_1:36279091-36279110 | Msa1017280:intron | 25.0% |
| ! | GAAATAACAAAACTACTCAT+TGG | - | chr7_1:36279620-36279639 | None:intergenic | 25.0% |
| ! | AAAATGACTTATCAAACTCT+TGG | + | chr7_1:36279705-36279724 | Msa1017280:intron | 25.0% |
| ! | AAATGACTTATCAAACTCTT+GGG | + | chr7_1:36279706-36279725 | Msa1017280:intron | 25.0% |
| ! | AAGATCATCAAATATGAATG+TGG | + | chr7_1:36279885-36279904 | Msa1017280:intron | 25.0% |
| ! | ATGAGATAGTTAACTTTGTT+AGG | - | chr7_1:36279952-36279971 | None:intergenic | 25.0% |
| !! | CTAAATATGACTCTTTCTTT+TGG | + | chr7_1:36280099-36280118 | Msa1017280:intron | 25.0% |
| ! | ACTCTTCAAATATGTTAGAT+AGG | + | chr7_1:36280459-36280478 | Msa1017280:intron | 25.0% |
| ! | GATCTCTTAAGATTCAATTA+AGG | + | chr7_1:36280645-36280664 | Msa1017280:intron | 25.0% |
| !!! | AATACCCATCATGTTTTAAT+TGG | + | chr7_1:36280735-36280754 | Msa1017280:intron | 25.0% |
| ! | TTGTCCAATTAAAACATGAT+GGG | - | chr7_1:36280742-36280761 | None:intergenic | 25.0% |
| ! | TTTGTCCAATTAAAACATGA+TGG | - | chr7_1:36280743-36280762 | None:intergenic | 25.0% |
| !!! | CTATTTCATAGTTTGTTGTT+TGG | + | chr7_1:36280764-36280783 | Msa1017280:intron | 25.0% |
| !! | ACATAGTATTTTGTCAAAAC+TGG | - | chr7_1:36280844-36280863 | None:intergenic | 25.0% |
| !!! | GTTTTGACAAAATACTATGT+AGG | + | chr7_1:36280844-36280863 | Msa1017280:intron | 25.0% |
| !!! | GGTTTTATTTTTGAATGAGG+AGG | - | chr7_1:36276820-36276839 | None:intergenic | 30.0% |
| !!! | GGTGGTTTTATTTTTGAATG+AGG | - | chr7_1:36276823-36276842 | None:intergenic | 30.0% |
| !! | AAAATGAATGGGTTTTGTAG+AGG | - | chr7_1:36276865-36276884 | None:intergenic | 30.0% |
| ACATATGTTAATATTGCAGG+TGG | - | chr7_1:36277036-36277055 | None:intergenic | 30.0% | |
| ! | TTGAATTTTTGTGCAGTAAG+TGG | + | chr7_1:36277063-36277082 | Msa1017280:intron | 30.0% |
| !! | GTTTTAGATTGTGAATCAGA+GGG | - | chr7_1:36277222-36277241 | None:intergenic | 30.0% |
| !!! | AGTTTTAGATTGTGAATCAG+AGG | - | chr7_1:36277223-36277242 | None:intergenic | 30.0% |
| AGAAGCTAATGAACAAATTG+GGG | + | chr7_1:36277397-36277416 | Msa1017280:intron | 30.0% | |
| ATTGATATCTCTGTGTATAC+TGG | + | chr7_1:36277479-36277498 | Msa1017280:intron | 30.0% | |
| !! | GTTTGTTGAAGTGCTTTTAT+TGG | + | chr7_1:36277626-36277645 | Msa1017280:intron | 30.0% |
| !! | TTGAAGTGCTTTTATTGGAT+TGG | + | chr7_1:36277631-36277650 | Msa1017280:intron | 30.0% |
| !! | TGAAGTGCTTTTATTGGATT+GGG | + | chr7_1:36277632-36277651 | Msa1017280:intron | 30.0% |
| !!! | GCTACTTTTCATTCATTCTA+AGG | - | chr7_1:36277758-36277777 | None:intergenic | 30.0% |
| CTAAATTCGTACATCCTAAT+TGG | - | chr7_1:36278091-36278110 | None:intergenic | 30.0% | |
| TGAATGATATGGTACATGAT+TGG | + | chr7_1:36278167-36278186 | Msa1017280:intron | 30.0% | |
| !!! | TCTTGGATTTTTTGAGAAGT+TGG | + | chr7_1:36278428-36278447 | Msa1017280:CDS | 30.0% |
| GCTAAAAAAACGAACTTACA+TGG | - | chr7_1:36278476-36278495 | None:intergenic | 30.0% | |
| TAATCAAATCACATACACAG+TGG | - | chr7_1:36278634-36278653 | None:intergenic | 30.0% | |
| !!! | TCCCTAATCACTTCATTTTT+TGG | + | chr7_1:36278686-36278705 | Msa1017280:intron | 30.0% |
| !!! | TCACTTCATTTTTTGGTTTC+AGG | + | chr7_1:36278693-36278712 | Msa1017280:intron | 30.0% |
| CTATTCATGTGTGTACAAAT+AGG | + | chr7_1:36278721-36278740 | Msa1017280:intron | 30.0% | |
| ACTATGTGCCTTAAAATACT+TGG | + | chr7_1:36278948-36278967 | Msa1017280:intron | 30.0% | |
| ! | AAGCTAGACCAAGTATTTTA+AGG | - | chr7_1:36278959-36278978 | None:intergenic | 30.0% |
| ! | TTCCTTGATAACAGACTATT+AGG | + | chr7_1:36279029-36279048 | Msa1017280:intron | 30.0% |
| AGACTATTAGGACTGAATAT+GGG | + | chr7_1:36279041-36279060 | Msa1017280:intron | 30.0% | |
| ! | AAACTGACTTATCAAACTCA+CGG | + | chr7_1:36279218-36279237 | Msa1017280:intron | 30.0% |
| !! | GTTTTAGTATGTCAGTTTCA+CGG | - | chr7_1:36279256-36279275 | None:intergenic | 30.0% |
| !!! | CATACTCATCAGTTTTAAGT+AGG | - | chr7_1:36279278-36279297 | None:intergenic | 30.0% |
| !! | GAGTTCTAAATCAACTTTCT+TGG | + | chr7_1:36279305-36279324 | Msa1017280:intron | 30.0% |
| !!! | TGTTAATCTCTGGTTTTGTT+TGG | + | chr7_1:36279427-36279446 | Msa1017280:intron | 30.0% |
| TCAAGTAAATGACATTAGAG+AGG | + | chr7_1:36279482-36279501 | Msa1017280:CDS | 30.0% | |
| CATACTCATCAGTTTCAAAT+AGG | - | chr7_1:36279765-36279784 | None:intergenic | 30.0% | |
| AAATCGCAATCTCAAGAAAA+TGG | - | chr7_1:36280032-36280051 | None:intergenic | 30.0% | |
| ATAGTAACGTCTCTTTAAGT+TGG | - | chr7_1:36280270-36280289 | None:intergenic | 30.0% | |
| TTCAATGCATATAGCAAGAT+AGG | + | chr7_1:36280295-36280314 | Msa1017280:intron | 30.0% | |
| AATCTGCATCTTAGTCAAAA+TGG | - | chr7_1:36280427-36280446 | None:intergenic | 30.0% | |
| CCTTAATATGTCCAAAGAAA+AGG | - | chr7_1:36280587-36280606 | None:intergenic | 30.0% | |
| ! | CCTTTTCTTTGGACATATTA+AGG | + | chr7_1:36280584-36280603 | Msa1017280:intron | 30.0% |
| GACATATTAAGGTTCAACTA+AGG | + | chr7_1:36280595-36280614 | Msa1017280:intron | 30.0% | |
| AAATACCCAAGAATGTAGTT+TGG | + | chr7_1:36280680-36280699 | Msa1017280:intron | 30.0% | |
| ATAGTCCAAACTACATTCTT+GGG | - | chr7_1:36280688-36280707 | None:intergenic | 30.0% | |
| AATAGTCCAAACTACATTCT+TGG | - | chr7_1:36280689-36280708 | None:intergenic | 30.0% | |
| !! | TTTGTTGTTTGGTTCTTTGT+TGG | + | chr7_1:36280775-36280794 | Msa1017280:intron | 30.0% |
| GGAGATGTTACTATTGAAAA+GGG | + | chr7_1:36280881-36280900 | Msa1017280:CDS | 30.0% | |
| ! | AAAATGGGTTTCATGAATGG+AGG | - | chr7_1:36276760-36276779 | None:intergenic | 35.0% |
| ! | GCAAAAATGGGTTTCATGAA+TGG | - | chr7_1:36276763-36276782 | None:intergenic | 35.0% |
| AAAGAAGGCAGAGCAAAAAT+GGG | - | chr7_1:36276775-36276794 | None:intergenic | 35.0% | |
| TGATCGGAAATGAAGAAAGA+AGG | - | chr7_1:36276790-36276809 | None:intergenic | 35.0% | |
| TCTTCATTTCCGATCAAATC+CGG | + | chr7_1:36276794-36276813 | Msa1017280:five_prime_UTR | 35.0% | |
| !!! | TTATTTTTGAATGAGGAGGC+CGG | - | chr7_1:36276816-36276835 | None:intergenic | 35.0% |
| ! | GTTTTGTAGAGGATGATTAG+AGG | - | chr7_1:36276854-36276873 | None:intergenic | 35.0% |
| CGGTCAAGGAAAAAATGAAT+GGG | - | chr7_1:36276876-36276895 | None:intergenic | 35.0% | |
| !!! | CCATTCATTTTTTCCTTGAC+CGG | + | chr7_1:36276874-36276893 | Msa1017280:five_prime_UTR | 35.0% |
| TACACATAACCTTCAACTTC+AGG | + | chr7_1:36277111-36277130 | Msa1017280:CDS | 35.0% | |
| AGAATCATACCTGAAGTTGA+AGG | - | chr7_1:36277123-36277142 | None:intergenic | 35.0% | |
| !!! | CTTTTTTTGGTGTTAGGAGT+TGG | + | chr7_1:36277334-36277353 | Msa1017280:intron | 35.0% |
| GAAGCTAATGAACAAATTGG+GGG | + | chr7_1:36277398-36277417 | Msa1017280:intron | 35.0% | |
| !!! | AAAGTAGCTTGCTTTTCTCT+TGG | + | chr7_1:36277770-36277789 | Msa1017280:intron | 35.0% |
| ! | TTTTGAATGCTGCATGCATA+TGG | + | chr7_1:36278353-36278372 | Msa1017280:intron | 35.0% |
| ! | CACTCTAACTGTTTTCTCTT+TGG | + | chr7_1:36278389-36278408 | Msa1017280:intron | 35.0% |
| ! | ACATGGAGTTTTCTCCAAAA+GGG | - | chr7_1:36278459-36278478 | None:intergenic | 35.0% |
| ! | TACATGGAGTTTTCTCCAAA+AGG | - | chr7_1:36278460-36278479 | None:intergenic | 35.0% |
| TGGGTATGTGTGTTAATGAT+TGG | + | chr7_1:36278529-36278548 | Msa1017280:intron | 35.0% | |
| TCTCAAGTATCTTAGATGTC+AGG | - | chr7_1:36278824-36278843 | None:intergenic | 35.0% | |
| TGAGATAGTAGCTAATATGC+AGG | + | chr7_1:36278839-36278858 | Msa1017280:intron | 35.0% | |
| GTCCTAATAGTCTGTTATCA+AGG | - | chr7_1:36279034-36279053 | None:intergenic | 35.0% | |
| CAGACTATTAGGACTGAATA+TGG | + | chr7_1:36279040-36279059 | Msa1017280:intron | 35.0% | |
| GACTATTAGGACTGAATATG+GGG | + | chr7_1:36279042-36279061 | Msa1017280:intron | 35.0% | |
| ! | AACTGACTTATCAAACTCAC+GGG | + | chr7_1:36279219-36279238 | Msa1017280:intron | 35.0% |
| ATATCCAGACAGAGAGTAAT+TGG | - | chr7_1:36279357-36279376 | None:intergenic | 35.0% | |
| TACATGTAAGGTCAGAACAT+GGG | - | chr7_1:36279848-36279867 | None:intergenic | 35.0% | |
| ATACATGTAAGGTCAGAACA+TGG | - | chr7_1:36279849-36279868 | None:intergenic | 35.0% | |
| ACCTTACATGTATGTGTAAC+TGG | + | chr7_1:36279856-36279875 | Msa1017280:intron | 35.0% | |
| !! | CACTGTCATTGATTCAACAA+AGG | + | chr7_1:36280485-36280504 | Msa1017280:intron | 35.0% |
| TATGTAGGAATTGACCATTG+AGG | + | chr7_1:36280859-36280878 | Msa1017280:intron | 35.0% | |
| ATGTAGGAATTGACCATTGA+GGG | + | chr7_1:36280860-36280879 | Msa1017280:intron | 35.0% | |
| AATAGTAACATCTCCCTCAA+TGG | - | chr7_1:36280876-36280895 | None:intergenic | 35.0% | |
| GGGAGATGTTACTATTGAAA+AGG | + | chr7_1:36280880-36280899 | Msa1017280:CDS | 35.0% | |
| GTTACTATTGAAAAGGGAAC+CGG | + | chr7_1:36280887-36280906 | Msa1017280:CDS | 35.0% | |
| AATAGCAACATCATCAAGTC+CGG | - | chr7_1:36280909-36280928 | None:intergenic | 35.0% | |
| ! | TGATGATGTTGCTATTGGAA+AGG | + | chr7_1:36280913-36280932 | Msa1017280:CDS | 35.0% |
| ! | GATGATGTTGCTATTGGAAA+GGG | + | chr7_1:36280914-36280933 | Msa1017280:CDS | 35.0% |
| GTTGGTACATCATCAAAAAG+TGG | + | chr7_1:36280953-36280972 | Msa1017280:CDS | 35.0% | |
| GAAAGAAGGCAGAGCAAAAA+TGG | - | chr7_1:36276776-36276795 | None:intergenic | 40.0% | |
| CCGGTCAAGGAAAAAATGAA+TGG | - | chr7_1:36276877-36276896 | None:intergenic | 40.0% | |
| !! | TTTTGATTGTAACTCCAGCG+CGG | - | chr7_1:36276941-36276960 | None:intergenic | 40.0% |
| GAAGGTTATGTGTACAATCC+TGG | - | chr7_1:36277105-36277124 | None:intergenic | 40.0% | |
| TCTCATGTTCACACACACTT+AGG | + | chr7_1:36277576-36277595 | Msa1017280:intron | 40.0% | |
| CTCATGTTCACACACACTTA+GGG | + | chr7_1:36277577-36277596 | Msa1017280:intron | 40.0% | |
| CACACACTTAGGGTTATTGT+TGG | + | chr7_1:36277587-36277606 | Msa1017280:intron | 40.0% | |
| GTTAAACATGCAGTCATGTC+AGG | + | chr7_1:36277709-36277728 | Msa1017280:intron | 40.0% | |
| GTACATCCTAATTGGGACTA+AGG | - | chr7_1:36278083-36278102 | None:intergenic | 40.0% | |
| GTGCGTCTCTTATAGTTTCT+TGG | + | chr7_1:36278411-36278430 | Msa1017280:intron | 40.0% | |
| ! | CATGGAGTTTTCTCCAAAAG+GGG | - | chr7_1:36278458-36278477 | None:intergenic | 40.0% |
| ATTAGGACTGAATATGGGGT+AGG | + | chr7_1:36279046-36279065 | Msa1017280:intron | 40.0% | |
| TTAGTATGTCAGTTTCACGG+TGG | - | chr7_1:36279253-36279272 | None:intergenic | 40.0% | |
| TGTTCCAATTACTCTCTGTC+TGG | + | chr7_1:36279350-36279369 | Msa1017280:intron | 40.0% | |
| TAGAGAGGCAATCAAACTGA+AGG | + | chr7_1:36279497-36279516 | Msa1017280:CDS | 40.0% | |
| GCCAGTTACACATACATGTA+AGG | - | chr7_1:36279860-36279879 | None:intergenic | 40.0% | |
| !! | GGACTTGATGATGTTGCTAT+TGG | + | chr7_1:36280908-36280927 | Msa1017280:CDS | 40.0% |
| ATGGGTTTCATGAATGGAGG+AGG | - | chr7_1:36276757-36276776 | None:intergenic | 45.0% | |
| TGATTAGAGGAAGACGATGG+TGG | - | chr7_1:36276841-36276860 | None:intergenic | 45.0% | |
| GGATGATTAGAGGAAGACGA+TGG | - | chr7_1:36276844-36276863 | None:intergenic | 45.0% | |
| GCAGGTGGTTGAAAATGAGA+TGG | - | chr7_1:36277021-36277040 | None:intergenic | 45.0% | |
| GGATGAAAAATCACTGCTCC+AGG | + | chr7_1:36277084-36277103 | Msa1017280:exon | 45.0% | |
| ACAAATTGGGGGTCAGATTC+AGG | + | chr7_1:36277409-36277428 | Msa1017280:intron | 45.0% | |
| CATCCTAATTGGGACTAAGG+AGG | - | chr7_1:36278080-36278099 | None:intergenic | 45.0% | |
| AAGTGGCTCTCATGATGAGA+AGG | + | chr7_1:36280970-36280989 | Msa1017280:CDS | 45.0% | |
| !! | CGTGAGAGTGGGTATTGAGT+TGG | - | chr7_1:36276730-36276749 | None:intergenic | 50.0% |
| ATGAGGAGGCCGGATTTGAT+CGG | - | chr7_1:36276806-36276825 | None:intergenic | 50.0% | |
| GACTAAGGAGGTGGTCGAAT+TGG | - | chr7_1:36278068-36278087 | None:intergenic | 50.0% | |
| CCTAATTGGGACTAAGGAGG+TGG | - | chr7_1:36278077-36278096 | None:intergenic | 50.0% | |
| CCACCTCCTTAGTCCCAATT+AGG | + | chr7_1:36278074-36278093 | Msa1017280:intron | 50.0% | |
| !! | AGAAGTTGGAGCACCCCTTT+TGG | + | chr7_1:36278442-36278461 | Msa1017280:CDS | 50.0% |
| ! | GTTGCTATTGGAAAGGGAGC+TGG | + | chr7_1:36280920-36280939 | Msa1017280:CDS | 50.0% |
| TATTGGAAAGGGAGCTGGAG+TGG | + | chr7_1:36280925-36280944 | Msa1017280:CDS | 50.0% | |
| GAGGAGGTCTACGTGAGAGT+GGG | - | chr7_1:36276741-36276760 | None:intergenic | 55.0% | |
| !! | GGGTGTTTTTGCTCCGGTCA+AGG | - | chr7_1:36276890-36276909 | None:intergenic | 55.0% |
| !!! | GGTCGAGGGTGTTTTTGCTC+CGG | - | chr7_1:36276896-36276915 | None:intergenic | 55.0% |
| AATTCCGGTACGGTGGTCGA+GGG | - | chr7_1:36276910-36276929 | None:intergenic | 55.0% | |
| GGAGCTGGAGTGGATGATGT+TGG | + | chr7_1:36280935-36280954 | Msa1017280:CDS | 55.0% | |
| GGAGGAGGTCTACGTGAGAG+TGG | - | chr7_1:36276742-36276761 | None:intergenic | 60.0% | |
| AACACCCTCGACCACCGTAC+CGG | + | chr7_1:36276903-36276922 | Msa1017280:five_prime_UTR | 60.0% | |
| GAATTCCGGTACGGTGGTCG+AGG | - | chr7_1:36276911-36276930 | None:intergenic | 60.0% | |
| TTGTAACTCCAGCGCGGCAG+CGG | - | chr7_1:36276935-36276954 | None:intergenic | 60.0% | |
| !! | GGGGGTCAGATTCAGGTTGC+AGG | + | chr7_1:36277416-36277435 | Msa1017280:intron | 60.0% |
| AGCGGCGAATTCCGGTACGG+TGG | - | chr7_1:36276917-36276936 | None:intergenic | 65.0% | |
| GGCAGCGGCGAATTCCGGTA+CGG | - | chr7_1:36276920-36276939 | None:intergenic | 65.0% | |
| AGCGCGGCAGCGGCGAATTC+CGG | - | chr7_1:36276925-36276944 | None:intergenic | 70.0% | |
| GGAATTCGCCGCTGCCGCGC+TGG | + | chr7_1:36276924-36276943 | Msa1017280:five_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 36276700 | 36281135 | 36276700 | ID=Msa1017280;Name=Msa1017280 |
| chr7_1 | mRNA | 36276700 | 36281135 | 36276700 | ID=Msa1017280-mRNA-1;Parent=Msa1017280;Name=Msa1017280-mRNA-1;_AED=0.24;_eAED=0.24;_QI=301|0.5|0.85|0.85|0.33|0.42|7|22|136 |
| chr7_1 | exon | 36276700 | 36276993 | 36276700 | ID=Msa1017280-mRNA-1:exon:6782;Parent=Msa1017280-mRNA-1 |
| chr7_1 | exon | 36277079 | 36277132 | 36277079 | ID=Msa1017280-mRNA-1:exon:6783;Parent=Msa1017280-mRNA-1 |
| chr7_1 | exon | 36278426 | 36278476 | 36278426 | ID=Msa1017280-mRNA-1:exon:6784;Parent=Msa1017280-mRNA-1 |
| chr7_1 | exon | 36278595 | 36278637 | 36278595 | ID=Msa1017280-mRNA-1:exon:6785;Parent=Msa1017280-mRNA-1 |
| chr7_1 | exon | 36279456 | 36279518 | 36279456 | ID=Msa1017280-mRNA-1:exon:6786;Parent=Msa1017280-mRNA-1 |
| chr7_1 | exon | 36280866 | 36281001 | 36280866 | ID=Msa1017280-mRNA-1:exon:6787;Parent=Msa1017280-mRNA-1 |
| chr7_1 | exon | 36281043 | 36281135 | 36281043 | ID=Msa1017280-mRNA-1:exon:6788;Parent=Msa1017280-mRNA-1 |
| chr7_1 | five_prime_UTR | 36276700 | 36276993 | 36276700 | ID=Msa1017280-mRNA-1:five_prime_utr;Parent=Msa1017280-mRNA-1 |
| chr7_1 | five_prime_UTR | 36277079 | 36277085 | 36277079 | ID=Msa1017280-mRNA-1:five_prime_utr;Parent=Msa1017280-mRNA-1 |
| chr7_1 | CDS | 36277086 | 36277132 | 36277086 | ID=Msa1017280-mRNA-1:cds;Parent=Msa1017280-mRNA-1 |
| chr7_1 | CDS | 36278426 | 36278476 | 36278426 | ID=Msa1017280-mRNA-1:cds;Parent=Msa1017280-mRNA-1 |
| chr7_1 | CDS | 36278595 | 36278637 | 36278595 | ID=Msa1017280-mRNA-1:cds;Parent=Msa1017280-mRNA-1 |
| chr7_1 | CDS | 36279456 | 36279518 | 36279456 | ID=Msa1017280-mRNA-1:cds;Parent=Msa1017280-mRNA-1 |
| chr7_1 | CDS | 36280866 | 36281001 | 36280866 | ID=Msa1017280-mRNA-1:cds;Parent=Msa1017280-mRNA-1 |
| chr7_1 | CDS | 36281043 | 36281113 | 36281043 | ID=Msa1017280-mRNA-1:cds;Parent=Msa1017280-mRNA-1 |
| chr7_1 | three_prime_UTR | 36281114 | 36281135 | 36281114 | ID=Msa1017280-mRNA-1:three_prime_utr;Parent=Msa1017280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
