Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806660 | XP_003614714.1 | 85.625 | 160 | 5 | 1 | 13 | 154 | 44 | 203 | 9.53e-90 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806660 | sp|B6K8A0|RRP36_SCHJY | 39.200 | 125 | 75 | 1 | 30 | 154 | 117 | 240 | 3.55e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806660 | G7JXB6 | 85.625 | 160 | 5 | 1 | 13 | 154 | 44 | 203 | 4.55e-90 | 272 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011170 | Msa0806660 | 0.802749 | 4.840257e-49 | -8.615850e-47 |
| Msa0014710 | Msa0806660 | 0.810516 | 1.108826e-50 | -8.615850e-47 |
| Msa0017510 | Msa0806660 | 0.839147 | 1.885467e-57 | -8.615850e-47 |
| Msa0084380 | Msa0806660 | 0.805627 | 1.218558e-49 | -8.615850e-47 |
| Msa0095560 | Msa0806660 | 0.801660 | 8.109160e-49 | -8.615850e-47 |
| Msa0114060 | Msa0806660 | 0.813495 | 2.486332e-51 | -8.615850e-47 |
| Msa0116770 | Msa0806660 | 0.804941 | 1.696297e-49 | -8.615850e-47 |
| Msa0620960 | Msa0806660 | 0.819017 | 1.448105e-52 | -8.615850e-47 |
| Msa0625720 | Msa0806660 | 0.803226 | 3.857568e-49 | -8.615850e-47 |
| Msa0627450 | Msa0806660 | 0.800979 | 1.117709e-48 | -8.615850e-47 |
| Msa0647170 | Msa0806660 | 0.808952 | 2.405113e-50 | -8.615850e-47 |
| Msa0657970 | Msa0806660 | 0.840551 | 8.122354e-58 | -8.615850e-47 |
| Msa0663380 | Msa0806660 | 0.829514 | 4.933299e-55 | -8.615850e-47 |
| Msa0663390 | Msa0806660 | 0.800665 | 1.295707e-48 | -8.615850e-47 |
| Msa0663920 | Msa0806660 | 0.806326 | 8.686591e-50 | -8.615850e-47 |
| Msa0667050 | Msa0806660 | 0.809983 | 1.444602e-50 | -8.615850e-47 |
| Msa0669320 | Msa0806660 | 0.802426 | 5.643246e-49 | -8.615850e-47 |
| Msa0673460 | Msa0806660 | 0.813079 | 3.069460e-51 | -8.615850e-47 |
| Msa0681270 | Msa0806660 | 0.802734 | 4.874066e-49 | -8.615850e-47 |
| Msa0683510 | Msa0806660 | 0.807958 | 3.919945e-50 | -8.615850e-47 |
| Msa0693380 | Msa0806660 | 0.813374 | 2.644482e-51 | -8.615850e-47 |
| Msa0724210 | Msa0806660 | 0.800526 | 1.382662e-48 | -8.615850e-47 |
| Msa0759410 | Msa0806660 | 0.815051 | 1.127022e-51 | -8.615850e-47 |
| Msa0760130 | Msa0806660 | 0.822364 | 2.464182e-53 | -8.615850e-47 |
| Msa0767760 | Msa0806660 | 0.814546 | 1.457802e-51 | -8.615850e-47 |
| Msa0796700 | Msa0806660 | 0.807223 | 5.614708e-50 | -8.615850e-47 |
| Msa0806660 | Msa0822870 | 0.829972 | 3.817282e-55 | -8.615850e-47 |
| Msa0806660 | Msa0832340 | 0.808851 | 2.527159e-50 | -8.615850e-47 |
| Msa0806660 | Msa0842650 | 0.802048 | 6.749309e-49 | -8.615850e-47 |
| Msa0806660 | Msa0880140 | 0.836682 | 8.110514e-57 | -8.615850e-47 |
| Msa0806660 | Msa0897330 | 0.833356 | 5.589435e-56 | -8.615850e-47 |
| Msa0806660 | Msa0909140 | 0.819751 | 9.854502e-53 | -8.615850e-47 |
| Msa0806660 | Msa0926890 | 0.809339 | 1.987323e-50 | -8.615850e-47 |
| Msa0806660 | Msa0927290 | 0.801548 | 8.547467e-49 | -8.615850e-47 |
| Msa0806660 | Msa0938220 | 0.800797 | 1.217679e-48 | -8.615850e-47 |
| Msa0806660 | Msa0945970 | 0.810360 | 1.198369e-50 | -8.615850e-47 |
| Msa0806660 | Msa0947660 | 0.819310 | 1.241829e-52 | -8.615850e-47 |
| Msa0806660 | Msa0953550 | 0.802530 | 5.371407e-49 | -8.615850e-47 |
| Msa0806660 | Msa0954130 | 0.801442 | 8.988842e-49 | -8.615850e-47 |
| Msa0806660 | Msa0969450 | 0.800379 | 1.481882e-48 | -8.615850e-47 |
| Msa0806660 | Msa0969520 | 0.818659 | 1.746548e-52 | -8.615850e-47 |
| Msa0806660 | Msa0974070 | 0.827534 | 1.483877e-54 | -8.615850e-47 |
| Msa0806660 | Msa1006660 | 0.801220 | 9.978871e-49 | -8.615850e-47 |
| Msa0806660 | Msa1014540 | 0.851760 | 7.195160e-61 | -8.615850e-47 |
| Msa0806660 | Msa1017280 | 0.812231 | 4.705648e-51 | -8.615850e-47 |
| Msa0806660 | Msa1030970 | 0.807262 | 5.507555e-50 | -8.615850e-47 |
| Msa0806660 | Msa1075220 | -0.816885 | 4.390804e-52 | -8.615850e-47 |
| Msa0806660 | Msa1075540 | 0.813726 | 2.212373e-51 | -8.615850e-47 |
| Msa0806660 | Msa1075650 | 0.818865 | 1.568328e-52 | -8.615850e-47 |
| Msa0806660 | Msa1082500 | 0.845113 | 4.972640e-59 | -8.615850e-47 |
| Msa0806660 | Msa1103980 | 0.801982 | 6.962171e-49 | -8.615850e-47 |
| Msa0806660 | Msa1113170 | 0.835065 | 2.084432e-56 | -8.615850e-47 |
| Msa0806660 | Msa1116130 | -0.808961 | 2.394789e-50 | -8.615850e-47 |
| Msa0806660 | Msa1131220 | 0.805457 | 1.322952e-49 | -8.615850e-47 |
| Msa0806660 | Msa1139000 | -0.801205 | 1.004781e-48 | -8.615850e-47 |
| Msa0806660 | Msa1162550 | -0.821581 | 3.741447e-53 | -8.615850e-47 |
| Msa0806660 | Msa1233890 | 0.834603 | 2.724247e-56 | -8.615850e-47 |
| Msa0806660 | Msa1249490 | 0.808569 | 2.904470e-50 | -8.615850e-47 |
| Msa0806660 | Msa1269230 | 0.809736 | 1.632751e-50 | -8.615850e-47 |
| Msa0806660 | Msa1277660 | 0.805705 | 1.173198e-49 | -8.615850e-47 |
| Msa0806660 | Msa1283860 | 0.801495 | 8.765748e-49 | -8.615850e-47 |
| Msa0806660 | Msa1284680 | 0.822751 | 2.003406e-53 | -8.615850e-47 |
| Msa0806660 | Msa1314340 | 0.809344 | 1.982414e-50 | -8.615850e-47 |
| Msa0806660 | Msa1322890 | 0.805681 | 1.187044e-49 | -8.615850e-47 |
| Msa0806660 | Msa1324500 | 0.814951 | 1.185941e-51 | -8.615850e-47 |
| Msa0806660 | Msa1372760 | 0.811571 | 6.549158e-51 | -8.615850e-47 |
| Msa0806660 | Msa1373030 | 0.817886 | 2.613562e-52 | -8.615850e-47 |
| Msa0806660 | Msa1392260 | 0.802400 | 5.711434e-49 | -8.615850e-47 |
| Msa0806660 | Msa1409870 | 0.804130 | 2.503434e-49 | -8.615850e-47 |
| Msa0806660 | Msa1466540 | 0.819041 | 1.430418e-52 | -8.615850e-47 |
| Msa0136070 | Msa0806660 | 0.806610 | 7.567687e-50 | -8.615850e-47 |
| Msa0157290 | Msa0806660 | 0.838103 | 3.508029e-57 | -8.615850e-47 |
| Msa0159930 | Msa0806660 | 0.800566 | 1.357174e-48 | -8.615850e-47 |
| Msa0165210 | Msa0806660 | 0.803722 | 3.044178e-49 | -8.615850e-47 |
| Msa0166870 | Msa0806660 | 0.816584 | 5.128914e-52 | -8.615850e-47 |
| Msa0169860 | Msa0806660 | 0.809515 | 1.821363e-50 | -8.615850e-47 |
| Msa0178930 | Msa0806660 | 0.800700 | 1.274600e-48 | -8.615850e-47 |
| Msa0188150 | Msa0806660 | 0.800390 | 1.473989e-48 | -8.615850e-47 |
| Msa0188830 | Msa0806660 | 0.804257 | 2.356147e-49 | -8.615850e-47 |
| Msa0197660 | Msa0806660 | 0.802778 | 4.774541e-49 | -8.615850e-47 |
| Msa0208090 | Msa0806660 | 0.805216 | 1.485622e-49 | -8.615850e-47 |
| Msa0215320 | Msa0806660 | -0.812028 | 5.210015e-51 | -8.615850e-47 |
| Msa0218240 | Msa0806660 | 0.812518 | 4.071433e-51 | -8.615850e-47 |
| Msa0218270 | Msa0806660 | 0.803977 | 2.694661e-49 | -8.615850e-47 |
| Msa0220580 | Msa0806660 | 0.813209 | 2.873534e-51 | -8.615850e-47 |
| Msa0223410 | Msa0806660 | -0.813175 | 2.923829e-51 | -8.615850e-47 |
| Msa0367870 | Msa0806660 | 0.801850 | 7.411690e-49 | -8.615850e-47 |
| Msa0388960 | Msa0806660 | 0.804559 | 2.038680e-49 | -8.615850e-47 |
| Msa0390400 | Msa0806660 | -0.800270 | 1.559138e-48 | -8.615850e-47 |
| Msa0393080 | Msa0806660 | 0.809709 | 1.655006e-50 | -8.615850e-47 |
| Msa0440750 | Msa0806660 | 0.817136 | 3.855153e-52 | -8.615850e-47 |
| Msa0453640 | Msa0806660 | 0.807654 | 4.547836e-50 | -8.615850e-47 |
| Msa0481530 | Msa0806660 | 0.800787 | 1.223226e-48 | -8.615850e-47 |
| Msa0283450 | Msa0806660 | 0.804446 | 2.151946e-49 | -8.615850e-47 |
| Msa0287650 | Msa0806660 | 0.810564 | 1.082750e-50 | -8.615850e-47 |
| Msa0288100 | Msa0806660 | 0.809381 | 1.946650e-50 | -8.615850e-47 |
| Msa0297050 | Msa0806660 | 0.804777 | 1.835904e-49 | -8.615850e-47 |
| Msa0340450 | Msa0806660 | 0.803856 | 2.854685e-49 | -8.615850e-47 |
| Msa0345970 | Msa0806660 | 0.816179 | 6.319905e-52 | -8.615850e-47 |
| Msa0484780 | Msa0806660 | 0.821591 | 3.721646e-53 | -8.615850e-47 |
| Msa0488560 | Msa0806660 | 0.802193 | 6.299857e-49 | -8.615850e-47 |
| Msa0512900 | Msa0806660 | 0.816247 | 6.101043e-52 | -8.615850e-47 |
| Msa0529890 | Msa0806660 | 0.803844 | 2.870964e-49 | -8.615850e-47 |
| Msa0532350 | Msa0806660 | 0.821995 | 3.002001e-53 | -8.615850e-47 |
| Msa0536220 | Msa0806660 | 0.814281 | 1.668429e-51 | -8.615850e-47 |
| Msa0567780 | Msa0806660 | 0.801480 | 8.825531e-49 | -8.615850e-47 |
| Msa0585300 | Msa0806660 | 0.806785 | 6.950545e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806660 | MtrunA17_Chr5g0423931 | 85.625 | 160 | 5 | 1 | 13 | 154 | 44 | 203 | 8.76e-94 | 272 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806660 | AT1G12650.1 | 55.639 | 133 | 57 | 2 | 23 | 154 | 71 | 202 | 1.96e-38 | 131 |
| Msa0806660 | AT1G12650.2 | 55.639 | 133 | 57 | 2 | 23 | 154 | 71 | 202 | 1.96e-38 | 131 |
| Msa0806660 | AT1G12650.3 | 55.639 | 133 | 57 | 2 | 23 | 154 | 71 | 202 | 1.96e-38 | 131 |
| Msa0806660 | AT1G12650.4 | 55.639 | 133 | 57 | 2 | 23 | 154 | 71 | 202 | 1.96e-38 | 131 |
Find 25 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACATTTCTTGAGATAAA+AGG | 0.188990 | 5_3:-26424645 | None:intergenic |
| ACAATTAATCTGACCTTCTT+AGG | 0.222334 | 5_3:-26422646 | None:intergenic |
| GAATATTGAGACACAGATTT+TGG | 0.225799 | 5_3:+26424574 | Msa0806660:CDS |
| TGGCATAACAGGCTCTTAAA+AGG | 0.329338 | 5_3:+26424370 | Msa0806660:intron |
| TTGATGATTGTAGGAGGAGG+AGG | 0.370023 | 5_3:+26421483 | None:intergenic |
| CCACGATTTGAGTCTCTTTG+CGG | 0.402540 | 5_3:+26423094 | Msa0806660:CDS |
| TGCGGTACATTTGACAATGA+TGG | 0.407412 | 5_3:+26423112 | Msa0806660:CDS |
| ATGATTGTAGGAGGAGGAGG+AGG | 0.432809 | 5_3:+26421486 | Msa0806660:CDS |
| TTCTTGCTACTAGCTTCCAT+TGG | 0.435250 | 5_3:-26422589 | None:intergenic |
| TCTATTTCACTTCTACGCTC+TGG | 0.442608 | 5_3:-26424414 | None:intergenic |
| TTACATTTCTTGAGATAAAA+GGG | 0.446015 | 5_3:-26424644 | None:intergenic |
| GGGAGATAAAATTATGTTGA+AGG | 0.457156 | 5_3:-26424677 | None:intergenic |
| GCGGTACATTTGACAATGAT+GGG | 0.485185 | 5_3:+26423113 | Msa0806660:CDS |
| TGCAGAAAGCTCGATCCAAT+GGG | 0.499915 | 5_3:+26421547 | Msa0806660:CDS |
| TGATCTTCCTGCTGAAAGAC+AGG | 0.502469 | 5_3:+26424269 | Msa0806660:CDS |
| TTGCAGAAAGCTCGATCCAA+TGG | 0.504502 | 5_3:+26421546 | Msa0806660:CDS |
| ACGTCTCTAAAAGCAGGAAC+TGG | 0.506037 | 5_3:-26422613 | None:intergenic |
| TTACCTACCTGTCTTTCAGC+AGG | 0.507162 | 5_3:-26424276 | None:intergenic |
| GAGAGAGAAGCAGCAAAGCA+AGG | 0.511269 | 5_3:+26424614 | Msa0806660:CDS |
| CGTCGTTCAAGCTCCTAAGA+AGG | 0.569172 | 5_3:+26422633 | Msa0806660:CDS |
| TGAACGACGTCTCTAAAAGC+AGG | 0.592618 | 5_3:-26422619 | None:intergenic |
| AAATAGAAGAGTACATAGCA+TGG | 0.598427 | 5_3:+26424430 | Msa0806660:CDS |
| AATAGAAGAGTACATAGCAT+GGG | 0.631081 | 5_3:+26424431 | Msa0806660:CDS |
| CCGCAAAGAGACTCAAATCG+TGG | 0.650639 | 5_3:-26423094 | None:intergenic |
| GCAGAAAGCTCGATCCAATG+GGG | 0.727256 | 5_3:+26421548 | Msa0806660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATAATTATATATTACTA+AGG | - | chr5_3:26422497-26422516 | None:intergenic | 10.0% |
| !! | TATTATTGTATTTGTAACTT+AGG | + | chr5_3:26421635-26421654 | Msa0806660:intron | 15.0% |
| !! | TCATTAAACTTATGAAAATA+GGG | + | chr5_3:26421785-26421804 | Msa0806660:intron | 15.0% |
| !!! | TTTTCATAAGTTATCTAATA+TGG | + | chr5_3:26422138-26422157 | Msa0806660:intron | 15.0% |
| !!! | ATATTTCTGTTTTATATATC+TGG | + | chr5_3:26423018-26423037 | Msa0806660:intron | 15.0% |
| !! | CTCATTAAACTTATGAAAAT+AGG | + | chr5_3:26421784-26421803 | Msa0806660:intron | 20.0% |
| !!! | ACTTATTTGAGTTTATTTAC+TGG | + | chr5_3:26421821-26421840 | Msa0806660:intron | 20.0% |
| !! | TAAAAATTTGACAATCCAAA+TGG | - | chr5_3:26421898-26421917 | None:intergenic | 20.0% |
| !!! | AAAACCTTATTTATTTGCAT+AGG | + | chr5_3:26422040-26422059 | Msa0806660:intron | 20.0% |
| !!! | TTAGCTTATTTTTTAGCTTA+TGG | - | chr5_3:26422073-26422092 | None:intergenic | 20.0% |
| !!! | TAAAAAATGTCTGAGTTTTA+AGG | + | chr5_3:26422947-26422966 | Msa0806660:intron | 20.0% |
| !!! | AAAAAATGTCTGAGTTTTAA+GGG | + | chr5_3:26422948-26422967 | Msa0806660:intron | 20.0% |
| !! | AATTGTGCTGAATTTAAATA+TGG | + | chr5_3:26422990-26423009 | Msa0806660:intron | 20.0% |
| !!! | TTTTTATTTTAACTTAGAGC+TGG | + | chr5_3:26423307-26423326 | Msa0806660:intron | 20.0% |
| !!! | TGTTGTTTTAACATTTTCTA+AGG | - | chr5_3:26423469-26423488 | None:intergenic | 20.0% |
| !! | AAAAAGAATAATCAATGACA+GGG | - | chr5_3:26423508-26423527 | None:intergenic | 20.0% |
| !! | AATCTACTAGATAATATTGA+AGG | + | chr5_3:26423580-26423599 | Msa0806660:intron | 20.0% |
| !! | TTGGAAAAGATAATCAAAAT+CGG | - | chr5_3:26423733-26423752 | None:intergenic | 20.0% |
| !!! | TACTTATTTCTAGATTGTAA+TGG | + | chr5_3:26424077-26424096 | Msa0806660:intron | 20.0% |
| !! | TTACATTTCTTGAGATAAAA+GGG | - | chr5_3:26424647-26424666 | None:intergenic | 20.0% |
| ! | AGAAGATAAGAAGTTCAAAA+GGG | + | chr5_3:26421596-26421615 | Msa0806660:intron | 25.0% |
| ! | AACTTATGAAAACAGCTTAT+GGG | + | chr5_3:26421871-26421890 | Msa0806660:intron | 25.0% |
| ! | ATAGCCTATGCAAATAAATA+AGG | - | chr5_3:26422047-26422066 | None:intergenic | 25.0% |
| ! | AAAAATAAGCTAATCCAAAC+AGG | + | chr5_3:26422080-26422099 | Msa0806660:intron | 25.0% |
| !! | AATAAGCTAAAAAACGCTTT+TGG | - | chr5_3:26422120-26422139 | None:intergenic | 25.0% |
| !! | TCATATGTTTTCAGATTGTT+TGG | - | chr5_3:26422383-26422402 | None:intergenic | 25.0% |
| !! | AATGATTCCCAATTTTTACT+AGG | + | chr5_3:26422566-26422585 | Msa0806660:intron | 25.0% |
| ! | AAAAAAACTATGCAAGCTAA+TGG | - | chr5_3:26422771-26422790 | None:intergenic | 25.0% |
| !!! | ATTAGCTTGCATAGTTTTTT+TGG | + | chr5_3:26422770-26422789 | Msa0806660:intron | 25.0% |
| !!! | TTAGCTTGCATAGTTTTTTT+GGG | + | chr5_3:26422771-26422790 | Msa0806660:intron | 25.0% |
| !! | ACTAATTTTACATACGATAG+TGG | - | chr5_3:26422917-26422936 | None:intergenic | 25.0% |
| ! | TACAACCTGAAAAATAATGA+AGG | - | chr5_3:26423068-26423087 | None:intergenic | 25.0% |
| ! | AAATGAACACATCAAGAAAA+AGG | - | chr5_3:26423171-26423190 | None:intergenic | 25.0% |
| !! | AAGTTTAAGTATTTTCGTAC+CGG | + | chr5_3:26423232-26423251 | Msa0806660:intron | 25.0% |
| !!! | AAATCAACATTGTTTTACAC+CGG | - | chr5_3:26423254-26423273 | None:intergenic | 25.0% |
| !!! | GAAATTAATTTGCATTCTTC+TGG | - | chr5_3:26423384-26423403 | None:intergenic | 25.0% |
| ! | GAATGCAAATTAATTTCTTC+TGG | + | chr5_3:26423387-26423406 | Msa0806660:intron | 25.0% |
| ! | TAATTTCAATCTTGGACTAT+GGG | - | chr5_3:26423444-26423463 | None:intergenic | 25.0% |
| ! | TTAATTTCAATCTTGGACTA+TGG | - | chr5_3:26423445-26423464 | None:intergenic | 25.0% |
| ! | CTAAGGATTAATTTCAATCT+TGG | - | chr5_3:26423452-26423471 | None:intergenic | 25.0% |
| ! | GAAAAAGAATAATCAATGAC+AGG | - | chr5_3:26423509-26423528 | None:intergenic | 25.0% |
| ! | TTCAAATGATACAATAGTCA+AGG | - | chr5_3:26423784-26423803 | None:intergenic | 25.0% |
| ! | AGATAGTTCCATATAATTCT+TGG | + | chr5_3:26423937-26423956 | Msa0806660:intron | 25.0% |
| ! | TGTAGAAACCAAGAATTATA+TGG | - | chr5_3:26423948-26423967 | None:intergenic | 25.0% |
| ! | AATATTAATTTCCAACCCAA+TGG | - | chr5_3:26423994-26424013 | None:intergenic | 25.0% |
| !!! | CAAGTGTTTTTAACTTAATC+TGG | + | chr5_3:26424147-26424166 | Msa0806660:intron | 25.0% |
| ! | ACTAATAAAACTTACACCAT+TGG | - | chr5_3:26424495-26424514 | None:intergenic | 25.0% |
| ! | CTTACATTTCTTGAGATAAA+AGG | - | chr5_3:26424648-26424667 | None:intergenic | 25.0% |
| CAGAAGATAAGAAGTTCAAA+AGG | + | chr5_3:26421595-26421614 | Msa0806660:intron | 30.0% | |
| ! | TTTGTAACTTAGGCATTGTT+TGG | + | chr5_3:26421645-26421664 | Msa0806660:intron | 30.0% |
| TATTAGCAACTTATAGTACC+AGG | + | chr5_3:26421678-26421697 | Msa0806660:intron | 30.0% | |
| ATTAGCAACTTATAGTACCA+GGG | + | chr5_3:26421679-26421698 | Msa0806660:intron | 30.0% | |
| TTATGAAAATAGGGTCTGTT+TGG | + | chr5_3:26421794-26421813 | Msa0806660:intron | 30.0% | |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | + | chr5_3:26421845-26421864 | Msa0806660:intron | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | + | chr5_3:26421846-26421865 | Msa0806660:intron | 30.0% |
| GAACTTATGAAAACAGCTTA+TGG | + | chr5_3:26421870-26421889 | Msa0806660:intron | 30.0% | |
| !! | CGCTTTTGGAAATTTTCATA+GGG | - | chr5_3:26422106-26422125 | None:intergenic | 30.0% |
| !! | ACGCTTTTGGAAATTTTCAT+AGG | - | chr5_3:26422107-26422126 | None:intergenic | 30.0% |
| ATAAGCTATTGCTATAGCAA+AGG | - | chr5_3:26422216-26422235 | None:intergenic | 30.0% | |
| AGACTGTTTGTGAAAAACAA+TGG | - | chr5_3:26422416-26422435 | None:intergenic | 30.0% | |
| TAATTATTTGTTTGACAGCG+TGG | + | chr5_3:26422507-26422526 | Msa0806660:intron | 30.0% | |
| CACACAAGGATAAGAATTAA+AGG | - | chr5_3:26422537-26422556 | None:intergenic | 30.0% | |
| !! | TCATTTTATTTGTGCACACA+AGG | - | chr5_3:26422551-26422570 | None:intergenic | 30.0% |
| ACAATTAATCTGACCTTCTT+AGG | - | chr5_3:26422649-26422668 | None:intergenic | 30.0% | |
| GCTAATGGCATTCATAAATA+AGG | - | chr5_3:26422756-26422775 | None:intergenic | 30.0% | |
| !!! | TAGCTTGCATAGTTTTTTTG+GGG | + | chr5_3:26422772-26422791 | Msa0806660:intron | 30.0% |
| TAGAGAAAACAATAGGCAAT+TGG | - | chr5_3:26422853-26422872 | None:intergenic | 30.0% | |
| TAAAGAATAGTACATGAGTC+GGG | - | chr5_3:26423549-26423568 | None:intergenic | 30.0% | |
| GTAAAGAATAGTACATGAGT+CGG | - | chr5_3:26423550-26423569 | None:intergenic | 30.0% | |
| ATTTCGTAAATACAGTGGAT+TGG | - | chr5_3:26423644-26423663 | None:intergenic | 30.0% | |
| ACAGTATTTCGTAAATACAG+TGG | - | chr5_3:26423649-26423668 | None:intergenic | 30.0% | |
| AAAAGATAATCAAAATCGGC+AGG | - | chr5_3:26423729-26423748 | None:intergenic | 30.0% | |
| ATGATACAATAGTCAAGGAA+AGG | - | chr5_3:26423779-26423798 | None:intergenic | 30.0% | |
| AAAATCTACTAAAACGCCAA+TGG | - | chr5_3:26424054-26424073 | None:intergenic | 30.0% | |
| CATGTATTATTAGTGCTACA+CGG | - | chr5_3:26424201-26424220 | None:intergenic | 30.0% | |
| GCACTAATAATACATGTACT+TGG | + | chr5_3:26424205-26424224 | Msa0806660:intron | 30.0% | |
| TTATGACTTTCATCTCATGA+CGG | + | chr5_3:26424340-26424359 | Msa0806660:intron | 30.0% | |
| ! | AAATAGAAGAGTACATAGCA+TGG | + | chr5_3:26424430-26424449 | Msa0806660:CDS | 30.0% |
| ! | AATAGAAGAGTACATAGCAT+GGG | + | chr5_3:26424431-26424450 | Msa0806660:CDS | 30.0% |
| ATAAAACTTACACCATTGGA+CGG | - | chr5_3:26424491-26424510 | None:intergenic | 30.0% | |
| ! | TCACATTTACATGTCTTTTC+AGG | + | chr5_3:26424523-26424542 | Msa0806660:intron | 30.0% |
| ! | GAATATTGAGACACAGATTT+TGG | + | chr5_3:26424574-26424593 | Msa0806660:CDS | 30.0% |
| TTGAACTTCTTATCTTCTGC+AGG | - | chr5_3:26421594-26421613 | None:intergenic | 35.0% | |
| AGAAGTTCAAAAGGGCTAAT+AGG | + | chr5_3:26421604-26421623 | Msa0806660:intron | 35.0% | |
| TCAAAAGGGCTAATAGGAAT+AGG | + | chr5_3:26421610-26421629 | Msa0806660:intron | 35.0% | |
| AATAGCTTATACATAAGCCC+TGG | - | chr5_3:26421699-26421718 | None:intergenic | 35.0% | |
| ! | AAATTTTCATAGGGCCTGTT+TGG | - | chr5_3:26422097-26422116 | None:intergenic | 35.0% |
| CTTATATGAGCTTACACATG+CGG | + | chr5_3:26422231-26422250 | Msa0806660:intron | 35.0% | |
| TTATTTGCAGCTTATAGCAC+AGG | - | chr5_3:26422289-26422308 | None:intergenic | 35.0% | |
| TTATTTGCAGCTTATAGCAC+AGG | - | chr5_3:26422289-26422308 | None:intergenic | 35.0% | |
| ! | CCATTGGCCTAGTAAAAATT+GGG | - | chr5_3:26422576-26422595 | None:intergenic | 35.0% |
| ! | TCCATTGGCCTAGTAAAAAT+TGG | - | chr5_3:26422577-26422596 | None:intergenic | 35.0% |
| !!! | AGCTTGCATAGTTTTTTTGG+GGG | + | chr5_3:26422773-26422792 | Msa0806660:intron | 35.0% |
| ACACATTTCCCTGTTAAACA+AGG | + | chr5_3:26422807-26422826 | Msa0806660:intron | 35.0% | |
| CACATTTCCCTGTTAAACAA+GGG | + | chr5_3:26422808-26422827 | Msa0806660:intron | 35.0% | |
| ACACACGTAGAGAAAACAAT+AGG | - | chr5_3:26422860-26422879 | None:intergenic | 35.0% | |
| TCATATGTAGTTAAGACTCC+AGG | + | chr5_3:26422890-26422909 | Msa0806660:intron | 35.0% | |
| !! | GCATGCCTTCATTATTTTTC+AGG | + | chr5_3:26423060-26423079 | Msa0806660:intron | 35.0% |
| TCTGGAAGTCTTTCTTACTA+TGG | + | chr5_3:26423405-26423424 | Msa0806660:intron | 35.0% | |
| CTGGAAGTCTTTCTTACTAT+GGG | + | chr5_3:26423406-26423425 | Msa0806660:intron | 35.0% | |
| TGGAAGTCTTTCTTACTATG+GGG | + | chr5_3:26423407-26423426 | Msa0806660:intron | 35.0% | |
| GCATTAGATATCCTCTGTTT+GGG | + | chr5_3:26423902-26423921 | Msa0806660:intron | 35.0% | |
| TAGCAATAATACCCAAACAG+AGG | - | chr5_3:26423916-26423935 | None:intergenic | 35.0% | |
| TCGTTTATGTGGATACCATT+GGG | + | chr5_3:26423976-26423995 | Msa0806660:intron | 35.0% | |
| TAAAACTTACACCATTGGAC+GGG | - | chr5_3:26424490-26424509 | None:intergenic | 35.0% | |
| ! | GCTAGCTGATGTAACTTTTG+AGG | + | chr5_3:26421521-26421540 | Msa0806660:CDS | 40.0% |
| AAACAGCTTATGGGTCCATT+TGG | + | chr5_3:26421880-26421899 | Msa0806660:intron | 40.0% | |
| ! | CCCAATTTTTACTAGGCCAA+TGG | + | chr5_3:26422573-26422592 | Msa0806660:intron | 40.0% |
| ! | TTCTTGCTACTAGCTTCCAT+TGG | - | chr5_3:26422592-26422611 | None:intergenic | 40.0% |
| AACAGCACAAGATATCAGCA+GGG | - | chr5_3:26422699-26422718 | None:intergenic | 40.0% | |
| AAACAGCACAAGATATCAGC+AGG | - | chr5_3:26422700-26422719 | None:intergenic | 40.0% | |
| !! | TTTACATACGATAGTGGACC+TGG | - | chr5_3:26422911-26422930 | None:intergenic | 40.0% |
| TGCGGTACATTTGACAATGA+TGG | + | chr5_3:26423112-26423131 | Msa0806660:CDS | 40.0% | |
| GCGGTACATTTGACAATGAT+GGG | + | chr5_3:26423113-26423132 | Msa0806660:CDS | 40.0% | |
| TGTCCTGAAGAAGTCAACAT+AGG | + | chr5_3:26423337-26423356 | Msa0806660:intron | 40.0% | |
| !! | CTTCCTATGTTGACTTCTTC+AGG | - | chr5_3:26423343-26423362 | None:intergenic | 40.0% |
| GGAAGAATGTGTTGAAGTTG+TGG | + | chr5_3:26423358-26423377 | Msa0806660:intron | 40.0% | |
| CAAGCATATTGCTTAGTGAG+TGG | + | chr5_3:26423880-26423899 | Msa0806660:intron | 40.0% | |
| GGCATTAGATATCCTCTGTT+TGG | + | chr5_3:26423901-26423920 | Msa0806660:intron | 40.0% | |
| TGGTATCCACATAAACGACA+CGG | - | chr5_3:26423974-26423993 | None:intergenic | 40.0% | |
| GTCGTTTATGTGGATACCAT+TGG | + | chr5_3:26423975-26423994 | Msa0806660:intron | 40.0% | |
| TTATGTGGATACCATTGGGT+TGG | + | chr5_3:26423980-26423999 | Msa0806660:intron | 40.0% | |
| !! | GATAGTTCTAACCAGCTCAT+AGG | + | chr5_3:26424027-26424046 | Msa0806660:intron | 40.0% |
| TGCTACACGGTTCTCATAAT+AGG | - | chr5_3:26424188-26424207 | None:intergenic | 40.0% | |
| ATACATGTACTTGGACTTGC+AGG | + | chr5_3:26424214-26424233 | Msa0806660:intron | 40.0% | |
| TGGCATAACAGGCTCTTAAA+AGG | + | chr5_3:26424370-26424389 | Msa0806660:intron | 40.0% | |
| TCTATTTCACTTCTACGCTC+TGG | - | chr5_3:26424417-26424436 | None:intergenic | 40.0% | |
| AAAACTTACACCATTGGACG+GGG | - | chr5_3:26424489-26424508 | None:intergenic | 40.0% | |
| TTGCAGAAAGCTCGATCCAA+TGG | + | chr5_3:26421546-26421565 | Msa0806660:CDS | 45.0% | |
| TGCAGAAAGCTCGATCCAAT+GGG | + | chr5_3:26421547-26421566 | Msa0806660:CDS | 45.0% | |
| ! | ACGTCTCTAAAAGCAGGAAC+TGG | - | chr5_3:26422616-26422635 | None:intergenic | 45.0% |
| ! | TGAACGACGTCTCTAAAAGC+AGG | - | chr5_3:26422622-26422641 | None:intergenic | 45.0% |
| ! | CCATGAGCCCTTGTTTAACA+GGG | - | chr5_3:26422818-26422837 | None:intergenic | 45.0% |
| ! | TCCATGAGCCCTTGTTTAAC+AGG | - | chr5_3:26422819-26422838 | None:intergenic | 45.0% |
| TTAAACAAGGGCTCATGGAG+AGG | + | chr5_3:26422820-26422839 | Msa0806660:intron | 45.0% | |
| CCACGATTTGAGTCTCTTTG+CGG | + | chr5_3:26423094-26423113 | Msa0806660:CDS | 45.0% | |
| !! | ATGATGGGTATGTTCACCTC+TGG | + | chr5_3:26423128-26423147 | Msa0806660:intron | 45.0% |
| AGAACAACAAACACGTCCAG+AGG | - | chr5_3:26423147-26423166 | None:intergenic | 45.0% | |
| ! | CGGCAGGATTTGTTTCAGTA+TGG | - | chr5_3:26423713-26423732 | None:intergenic | 45.0% |
| ! | AATTTAGAGCATGTCCTGCC+CGG | + | chr5_3:26423751-26423770 | Msa0806660:intron | 45.0% |
| !! | AATAGTCAAGGAAAGGCACC+GGG | - | chr5_3:26423772-26423791 | None:intergenic | 45.0% |
| ! | CAATAGTCAAGGAAAGGCAC+CGG | - | chr5_3:26423773-26423792 | None:intergenic | 45.0% |
| !! | ACAATGCCGTGTCGTTTATG+TGG | + | chr5_3:26423965-26423984 | Msa0806660:intron | 45.0% |
| TAACCAGCTCATAGGTCCAT+TGG | + | chr5_3:26424035-26424054 | Msa0806660:intron | 45.0% | |
| TGATCTTCCTGCTGAAAGAC+AGG | + | chr5_3:26424269-26424288 | Msa0806660:CDS | 45.0% | |
| TTACCTACCTGTCTTTCAGC+AGG | - | chr5_3:26424279-26424298 | None:intergenic | 45.0% | |
| !! | AAATAATTATATATTACTAA+GGG | - | chr5_3:26422496-26422515 | None:intergenic | 5.0% |
| ATGATTGTAGGAGGAGGAGG+AGG | + | chr5_3:26421486-26421505 | Msa0806660:CDS | 50.0% | |
| GCAGAAAGCTCGATCCAATG+GGG | + | chr5_3:26421548-26421567 | Msa0806660:CDS | 50.0% | |
| CGTCGTTCAAGCTCCTAAGA+AGG | + | chr5_3:26422633-26422652 | Msa0806660:CDS | 50.0% | |
| ATCAGCAGGGCAGAGATCAT+TGG | - | chr5_3:26422686-26422705 | None:intergenic | 50.0% | |
| CCCTGTTAAACAAGGGCTCA+TGG | + | chr5_3:26422815-26422834 | Msa0806660:intron | 50.0% | |
| CCGCAAAGAGACTCAAATCG+TGG | - | chr5_3:26423097-26423116 | None:intergenic | 50.0% | |
| ! | GGGCAGGACATGCTCTAAAT+TGG | - | chr5_3:26423752-26423771 | None:intergenic | 50.0% |
| CTTCCTGCTGAAAGACAGGT+AGG | + | chr5_3:26424273-26424292 | Msa0806660:intron | 50.0% | |
| CATCTCATGACGGCATCTTC+TGG | + | chr5_3:26424350-26424369 | Msa0806660:intron | 50.0% | |
| ACGGCATCTTCTGGCATAAC+AGG | + | chr5_3:26424359-26424378 | Msa0806660:intron | 50.0% | |
| TGTTTGTCTTCCCCGTCCAA+TGG | + | chr5_3:26424476-26424495 | Msa0806660:intron | 50.0% | |
| GAGAGAGAAGCAGCAAAGCA+AGG | + | chr5_3:26424614-26424633 | Msa0806660:CDS | 50.0% | |
| GAAAAACGCATGCGCCCCAT+TGG | - | chr5_3:26421565-26421584 | None:intergenic | 55.0% | |
| AACAAGGGCTCATGGAGAGG+AGG | + | chr5_3:26422823-26422842 | Msa0806660:intron | 55.0% | |
| ACGCCAATGGACCTATGAGC+TGG | - | chr5_3:26424041-26424060 | None:intergenic | 55.0% | |
| GCTTGCGCACGCAAACGCAA+TGG | - | chr5_3:26423865-26423884 | None:intergenic | 60.0% | |
| !! | GTCAAGGAAAGGCACCGGGC+AGG | - | chr5_3:26423768-26423787 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 26421486 | 26424688 | 26421486 | ID=Msa0806660;Name=Msa0806660 |
| chr5_3 | mRNA | 26421486 | 26424688 | 26421486 | ID=Msa0806660-mRNA-1;Parent=Msa0806660;Name=Msa0806660-mRNA-1;_AED=0.22;_eAED=0.25;_QI=0|0.2|0.16|1|0.8|0.83|6|0|161 |
| chr5_3 | exon | 26421486 | 26421577 | 26421486 | ID=Msa0806660-mRNA-1:exon:9621;Parent=Msa0806660-mRNA-1 |
| chr5_3 | exon | 26422588 | 26422654 | 26422588 | ID=Msa0806660-mRNA-1:exon:9622;Parent=Msa0806660-mRNA-1 |
| chr5_3 | exon | 26423082 | 26423134 | 26423082 | ID=Msa0806660-mRNA-1:exon:9623;Parent=Msa0806660-mRNA-1 |
| chr5_3 | exon | 26424236 | 26424290 | 26424236 | ID=Msa0806660-mRNA-1:exon:9624;Parent=Msa0806660-mRNA-1 |
| chr5_3 | exon | 26424381 | 26424455 | 26424381 | ID=Msa0806660-mRNA-1:exon:9625;Parent=Msa0806660-mRNA-1 |
| chr5_3 | exon | 26424545 | 26424688 | 26424545 | ID=Msa0806660-mRNA-1:exon:9626;Parent=Msa0806660-mRNA-1 |
| chr5_3 | CDS | 26421486 | 26421577 | 26421486 | ID=Msa0806660-mRNA-1:cds;Parent=Msa0806660-mRNA-1 |
| chr5_3 | CDS | 26422588 | 26422654 | 26422588 | ID=Msa0806660-mRNA-1:cds;Parent=Msa0806660-mRNA-1 |
| chr5_3 | CDS | 26423082 | 26423134 | 26423082 | ID=Msa0806660-mRNA-1:cds;Parent=Msa0806660-mRNA-1 |
| chr5_3 | CDS | 26424236 | 26424290 | 26424236 | ID=Msa0806660-mRNA-1:cds;Parent=Msa0806660-mRNA-1 |
| chr5_3 | CDS | 26424381 | 26424455 | 26424381 | ID=Msa0806660-mRNA-1:cds;Parent=Msa0806660-mRNA-1 |
| chr5_3 | CDS | 26424545 | 26424688 | 26424545 | ID=Msa0806660-mRNA-1:cds;Parent=Msa0806660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
