Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022730 | XP_013448969.1 | 94.118 | 255 | 12 | 2 | 1 | 253 | 1 | 254 | 4.22e-166 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022730 | sp|Q8W487|YB95_ARATH | 42.412 | 257 | 137 | 7 | 1 | 253 | 1 | 250 | 1.65e-58 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022730 | I3SR78 | 94.118 | 255 | 12 | 2 | 1 | 253 | 1 | 254 | 2.02e-166 | 469 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0223240 | Msa1022730 | 0.800789 | 1.222126e-48 | -8.615850e-47 |
| Msa0433060 | Msa1022730 | 0.810384 | 1.184174e-50 | -8.615850e-47 |
| Msa1022730 | Msa1070810 | 0.811288 | 7.546000e-51 | -8.615850e-47 |
| Msa1022730 | Msa1106870 | 0.840125 | 1.049950e-57 | -8.615850e-47 |
| Msa1022730 | Msa1158630 | 0.817167 | 3.794411e-52 | -8.615850e-47 |
| Msa1022730 | Msa1299690 | 0.819011 | 1.452822e-52 | -8.615850e-47 |
| Msa1022730 | Msa1332230 | 0.805234 | 1.473084e-49 | -8.615850e-47 |
| Msa1022730 | Msa1341780 | 0.819076 | 1.403835e-52 | -8.615850e-47 |
| Msa1022730 | Msa1364810 | 0.805867 | 1.084739e-49 | -8.615850e-47 |
| Msa1022730 | Msa1433590 | 0.824175 | 9.307512e-54 | -8.615850e-47 |
| Msa0524680 | Msa1022730 | 0.810995 | 8.736531e-51 | -8.615850e-47 |
| Msa0587830 | Msa1022730 | 0.814279 | 1.670286e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022730 | MtrunA17_Chr7g0239661 | 94.118 | 255 | 12 | 2 | 1 | 253 | 1 | 254 | 3.88e-170 | 469 |
| Msa1022730 | MtrunA17_Chr5g0435861 | 47.012 | 251 | 111 | 5 | 20 | 252 | 8 | 254 | 1.92e-68 | 211 |
| Msa1022730 | MtrunA17_Chr4g0001071 | 37.736 | 159 | 91 | 3 | 98 | 253 | 83 | 236 | 2.64e-28 | 107 |
| Msa1022730 | MtrunA17_Chr1g0149801 | 30.736 | 231 | 142 | 9 | 28 | 253 | 16 | 233 | 1.13e-19 | 84.7 |
| Msa1022730 | MtrunA17_Chr7g0257161 | 46.667 | 60 | 32 | 0 | 194 | 253 | 141 | 200 | 1.55e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1022730 | AT5G02050.1 | 47.601 | 271 | 120 | 6 | 1 | 253 | 1 | 267 | 4.67e-69 | 214 |
| Msa1022730 | AT3G55605.1 | 44.906 | 265 | 127 | 8 | 1 | 253 | 1 | 258 | 3.63e-62 | 196 |
| Msa1022730 | AT2G39795.1 | 42.412 | 257 | 137 | 7 | 1 | 253 | 1 | 250 | 1.68e-59 | 189 |
| Msa1022730 | AT5G05990.1 | 38.132 | 257 | 135 | 7 | 18 | 252 | 4 | 258 | 1.15e-46 | 156 |
| Msa1022730 | AT2G39790.1 | 33.597 | 253 | 153 | 8 | 1 | 252 | 1 | 239 | 4.18e-34 | 123 |
| Msa1022730 | AT1G15870.1 | 30.180 | 222 | 139 | 8 | 39 | 253 | 29 | 241 | 1.93e-27 | 106 |
| Msa1022730 | AT1G80720.2 | 30.808 | 198 | 126 | 5 | 58 | 253 | 53 | 241 | 1.77e-22 | 92.8 |
| Msa1022730 | AT1G80720.1 | 30.808 | 198 | 126 | 5 | 58 | 253 | 1 | 189 | 3.01e-22 | 90.9 |
| Msa1022730 | AT4G31930.1 | 31.535 | 241 | 142 | 9 | 19 | 253 | 11 | 234 | 1.01e-19 | 85.5 |
| Msa1022730 | AT4G32605.1 | 31.915 | 94 | 60 | 1 | 164 | 253 | 126 | 219 | 6.39e-11 | 60.8 |
Find 87 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCATCCGGATTCTTTA+TGG | 0.182617 | 7_1:-49529727 | None:intergenic |
| AGGGTTTAGTGTTAGGGTTT+TGG | 0.197741 | 7_1:-49527134 | None:intergenic |
| GGGTTTGAGGGTTTAGTGTT+AGG | 0.271227 | 7_1:-49527141 | None:intergenic |
| ATGGAGTGTGTATGGAGTTT+GGG | 0.281286 | 7_1:+49529664 | Msa1022730:CDS |
| CTCTGTTGAGGTGCCACGTT+AGG | 0.340860 | 7_1:-49529561 | None:intergenic |
| AATGGAGTGTGTATGGAGTT+TGG | 0.345306 | 7_1:+49529663 | Msa1022730:CDS |
| CTATCATTCTCATTCTTCTC+GGG | 0.360091 | 7_1:-49529600 | None:intergenic |
| CAAAGACAACAAGGAATACT+TGG | 0.378496 | 7_1:+49529969 | Msa1022730:CDS |
| GCTATCATTCTCATTCTTCT+CGG | 0.381925 | 7_1:-49529601 | None:intergenic |
| GATTGCGCTGTGGAAGGTTC+TGG | 0.386945 | 7_1:-49527264 | None:intergenic |
| CAAAGGAAATGGAGTGTGTA+TGG | 0.388939 | 7_1:+49529656 | Msa1022730:CDS |
| AGTTGAATAGTTCTTTCTCC+AGG | 0.396432 | 7_1:-49529492 | None:intergenic |
| GGTTTGAGGGTTTAGTGTTA+GGG | 0.399619 | 7_1:-49527140 | None:intergenic |
| GAGTGTAGAAAGGGGTTTGA+GGG | 0.401665 | 7_1:-49527153 | None:intergenic |
| GAGGAGAGGGAGTGCGGCGG+CGG | 0.404148 | 7_1:-49527216 | None:intergenic |
| CTATCAATCACAACCTCATC+AGG | 0.408681 | 7_1:-49529699 | None:intergenic |
| TAACCATCAGATCATATTAC+AGG | 0.408949 | 7_1:-49530111 | None:intergenic |
| TAGACTCTTGTATTGATTGA+AGG | 0.413224 | 7_1:-49530200 | None:intergenic |
| GTGCGGCGGCGGCGCCGCGA+CGG | 0.413744 | 7_1:-49527205 | None:intergenic |
| GGCGGCGCCGCGACGGAGAG+CGG | 0.421645 | 7_1:-49527198 | None:intergenic |
| TGAAGACCAGCTGGTATATG+AGG | 0.426221 | 7_1:+49529749 | Msa1022730:CDS |
| ATGCATTTAAACTAAAATCA+AGG | 0.442879 | 7_1:-49530081 | None:intergenic |
| TTGAAAACAGTCACAACTAA+AGG | 0.487624 | 7_1:-49529636 | None:intergenic |
| TGCGGAGGTGAGTGTAGAAA+GGG | 0.487812 | 7_1:-49527162 | None:intergenic |
| CAATACAAGAGTCTATAGAT+AGG | 0.488950 | 7_1:+49530208 | Msa1022730:three_prime_UTR |
| AGCTGGTCTTCAGATTCATC+CGG | 0.494031 | 7_1:-49529738 | None:intergenic |
| TTTGAGATCGAGGACAACCC+TGG | 0.494413 | 7_1:+49529474 | Msa1022730:CDS |
| ACTTGAGAAAAGCCTTCTGC+AGG | 0.495315 | 7_1:-49529885 | None:intergenic |
| TAGCTTGTCCATAAAGAATC+CGG | 0.497260 | 7_1:+49529719 | Msa1022730:CDS |
| TGGAGGAAGTTGCCGCTGCA+CGG | 0.501833 | 7_1:-49527244 | None:intergenic |
| TGAGTGTAGAAAGGGGTTTG+AGG | 0.505609 | 7_1:-49527154 | None:intergenic |
| TTGCCGCTGCACGGCGAGAG+AGG | 0.509670 | 7_1:-49527235 | None:intergenic |
| GGGTTGTCCTCGATCTCAAA+AGG | 0.511746 | 7_1:-49529471 | None:intergenic |
| CGAAGAAGAGTATCATCAGC+GGG | 0.511851 | 7_1:-49527368 | None:intergenic |
| TCTGTTGAGGTGCCACGTTA+GGG | 0.512444 | 7_1:-49529560 | None:intergenic |
| TTGCGGAGGTGAGTGTAGAA+AGG | 0.517086 | 7_1:-49527163 | None:intergenic |
| GTTGAATAGTTCTTTCTCCA+GGG | 0.519495 | 7_1:-49529491 | None:intergenic |
| AGAGAGGAGAGGGAGTGCGG+CGG | 0.530798 | 7_1:-49527219 | None:intergenic |
| AGACTCTTGTATTGATTGAA+GGG | 0.531980 | 7_1:-49530199 | None:intergenic |
| GAGTGGTTTCATTGTGGCGA+AGG | 0.535144 | 7_1:-49527298 | None:intergenic |
| ACCTCAACAGAGTGAGGATG+AGG | 0.540010 | 7_1:+49529572 | Msa1022730:CDS |
| CTGCACGGCGAGAGAGGAGA+GGG | 0.542154 | 7_1:-49527229 | None:intergenic |
| ATTGTGGCGAAGGAGGTTAA+CGG | 0.544318 | 7_1:-49527288 | None:intergenic |
| TGAAATCGACTGTGCTCTTG+AGG | 0.545067 | 7_1:+49527403 | Msa1022730:CDS |
| CCCTCTCGTAGCTTCGCTTA+CGG | 0.550555 | 7_1:+49527329 | Msa1022730:CDS |
| GCTCTTGAGGATAATAATGA+AGG | 0.555442 | 7_1:+49527416 | Msa1022730:CDS |
| TTGTGTTGGGTGTTATCCCT+CGG | 0.555715 | 7_1:-49529918 | None:intergenic |
| GCCTCATCCTCACTCTGTTG+AGG | 0.559817 | 7_1:-49529573 | None:intergenic |
| TGCATTTAAACTAAAATCAA+GGG | 0.563695 | 7_1:-49530080 | None:intergenic |
| AAAGACAACAAGGAATACTT+GGG | 0.563940 | 7_1:+49529970 | Msa1022730:CDS |
| TGGTTTCATTGTGGCGAAGG+AGG | 0.565255 | 7_1:-49527295 | None:intergenic |
| AACGGCGATTGCGCTGTGGA+AGG | 0.565623 | 7_1:-49527270 | None:intergenic |
| GATCTCAAAAGGAAAATCAC+CGG | 0.567645 | 7_1:-49529460 | None:intergenic |
| GGATGAATCTGAAGACCAGC+TGG | 0.570489 | 7_1:+49529740 | Msa1022730:CDS |
| CAGGTCCCTCATATACCAGC+TGG | 0.571273 | 7_1:-49529755 | None:intergenic |
| GCGAGAGAGGAGAGGGAGTG+CGG | 0.575299 | 7_1:-49527222 | None:intergenic |
| TATCATTCTCATTCTTCTCG+GGG | 0.576332 | 7_1:-49529599 | None:intergenic |
| CTCAAGTATCTCGAGATCCG+AGG | 0.584465 | 7_1:+49529901 | Msa1022730:CDS |
| CAAAATGAGTGGTTTCATTG+TGG | 0.586542 | 7_1:-49527304 | None:intergenic |
| CACAGTCGATTTCACTGTCA+AGG | 0.589925 | 7_1:-49527394 | None:intergenic |
| TTTGGATGAAAACCTGCAGA+AGG | 0.596555 | 7_1:+49529873 | Msa1022730:CDS |
| TCAAGTATCTCGAGATCCGA+GGG | 0.601222 | 7_1:+49529902 | Msa1022730:CDS |
| TTCTACACTCACCTCCGCAA+TGG | 0.601289 | 7_1:+49527166 | Msa1022730:exon |
| CTAAATGCTTACGTGAACTC+AGG | 0.611960 | 7_1:-49529774 | None:intergenic |
| TCTCCTCTCTCGCCGTGCAG+CGG | 0.617355 | 7_1:+49527232 | Msa1022730:CDS |
| ATCTCAAAAGGAAAATCACC+GGG | 0.618030 | 7_1:-49529459 | None:intergenic |
| TGGAGTGTGTATGGAGTTTG+GGG | 0.622811 | 7_1:+49529665 | Msa1022730:CDS |
| TGCGCTGTGGAAGGTTCTGG+AGG | 0.628252 | 7_1:-49527261 | None:intergenic |
| GAAGACCAGCTGGTATATGA+GGG | 0.628639 | 7_1:+49529750 | Msa1022730:CDS |
| GCTGCACGGCGAGAGAGGAG+AGG | 0.631466 | 7_1:-49527230 | None:intergenic |
| TGTCCTGTAATATGATCTGA+TGG | 0.633731 | 7_1:+49530108 | Msa1022730:three_prime_UTR |
| TCGAAGAAGAGTATCATCAG+CGG | 0.634573 | 7_1:-49527369 | None:intergenic |
| CGTGGCACCTCAACAGAGTG+AGG | 0.643427 | 7_1:+49529566 | Msa1022730:CDS |
| CATGTTCAACAAAGACAACA+AGG | 0.647062 | 7_1:+49529960 | Msa1022730:CDS |
| ACAACAAGGAATACTTGGGG+TGG | 0.664017 | 7_1:+49529974 | Msa1022730:CDS |
| AGCGGTGTACATAGCCATTG+CGG | 0.666792 | 7_1:-49527180 | None:intergenic |
| GGTTAACGGCGATTGCGCTG+TGG | 0.671069 | 7_1:-49527274 | None:intergenic |
| ACGAGAGGGTACAAAATGAG+TGG | 0.672739 | 7_1:-49527315 | None:intergenic |
| AAGAAGAGTATCATCAGCGG+GGG | 0.679029 | 7_1:-49527366 | None:intergenic |
| GCCGTAAGCGAAGCTACGAG+AGG | 0.685303 | 7_1:-49527330 | None:intergenic |
| ATGTACACCGCTCTCCGTCG+CGG | 0.689738 | 7_1:+49527191 | Msa1022730:CDS |
| TCAAGTTGACATCCCTAACG+TGG | 0.692064 | 7_1:+49529548 | Msa1022730:CDS |
| GCGGAGGTGAGTGTAGAAAG+GGG | 0.698638 | 7_1:-49527161 | None:intergenic |
| CCGTAAGCGAAGCTACGAGA+GGG | 0.698699 | 7_1:-49527329 | None:intergenic |
| GGTGTACATAGCCATTGCGG+AGG | 0.709206 | 7_1:-49527177 | None:intergenic |
| GAAGAAGAGTATCATCAGCG+GGG | 0.713416 | 7_1:-49527367 | None:intergenic |
| AAGACAACAAGGAATACTTG+GGG | 0.756411 | 7_1:+49529971 | Msa1022730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAACTTAAAAACAAA+TGG | - | chr7_1:49527470-49527489 | None:intergenic | 10.0% |
| !!! | TTTCAATTTTTTTTTTTGTT+GGG | + | chr7_1:49527567-49527586 | Msa1022730:intron | 10.0% |
| !!! | AAAAAATTACGTTTGTTAAA+AGG | - | chr7_1:49527442-49527461 | None:intergenic | 15.0% |
| !!! | GTTTCAATTTTTTTTTTTGT+TGG | + | chr7_1:49527566-49527585 | Msa1022730:intron | 15.0% |
| !! | AAGATGTAAAAATTCTATAA+TGG | + | chr7_1:49527770-49527789 | Msa1022730:intron | 15.0% |
| !!! | AATTTTTTTTTTTGTTGGGT+TGG | + | chr7_1:49527571-49527590 | Msa1022730:intron | 20.0% |
| !! | AAAAACAAAACTTCACAAAA+GGG | - | chr7_1:49527644-49527663 | None:intergenic | 20.0% |
| !! | AAAAAACAAAACTTCACAAA+AGG | - | chr7_1:49527645-49527664 | None:intergenic | 20.0% |
| !!! | GAAGTTTTGTTTTTTATTAG+TGG | + | chr7_1:49527650-49527669 | Msa1022730:intron | 20.0% |
| !!! | ATAGAATCTTTTGTATGATA+AGG | + | chr7_1:49527679-49527698 | Msa1022730:intron | 20.0% |
| !!! | TAGAATCTTTTGTATGATAA+GGG | + | chr7_1:49527680-49527699 | Msa1022730:intron | 20.0% |
| !!! | TAGAATTTTTACATCTTACA+AGG | - | chr7_1:49527767-49527786 | None:intergenic | 20.0% |
| !!! | TCATTTTCTCAAAATATTAC+TGG | + | chr7_1:49527991-49528010 | Msa1022730:intron | 20.0% |
| !!! | TTCATCCAATATCATTTTTT+CGG | - | chr7_1:49528316-49528335 | None:intergenic | 20.0% |
| !!! | TTTAGTTGATGTAAATAAAG+TGG | + | chr7_1:49528370-49528389 | Msa1022730:intron | 20.0% |
| !! | AAATATAAACAAAAATGGAG+TGG | - | chr7_1:49528663-49528682 | None:intergenic | 20.0% |
| !! | GAGTGAAATATAAACAAAAA+TGG | - | chr7_1:49528668-49528687 | None:intergenic | 20.0% |
| !! | TAAATCCAGACTTAAAAAAT+AGG | - | chr7_1:49528706-49528725 | None:intergenic | 20.0% |
| !! | TGCATTTAAACTAAAATCAA+GGG | - | chr7_1:49530083-49530102 | None:intergenic | 20.0% |
| !! | ATGCATTTAAACTAAAATCA+AGG | - | chr7_1:49530084-49530103 | None:intergenic | 20.0% |
| !!! | GCTAATAATTTTTGAAAACT+TGG | + | chr7_1:49530143-49530162 | Msa1022730:three_prime_UTR | 20.0% |
| ! | AAAACAAAACTTCACAAAAG+GGG | - | chr7_1:49527643-49527662 | None:intergenic | 25.0% |
| !! | TGTATGATAAGGGTTTTTAT+AGG | + | chr7_1:49527690-49527709 | Msa1022730:intron | 25.0% |
| !! | GTATGATAAGGGTTTTTATA+GGG | + | chr7_1:49527691-49527710 | Msa1022730:intron | 25.0% |
| !! | TTTTACATCTTACAAGGAAA+TGG | - | chr7_1:49527761-49527780 | None:intergenic | 25.0% |
| !! | CATGTTCTGAACATTATTAT+TGG | + | chr7_1:49527916-49527935 | Msa1022730:intron | 25.0% |
| ! | GTACTAAATATGTTTCACAT+AGG | + | chr7_1:49528134-49528153 | Msa1022730:intron | 25.0% |
| !! | AGTGTCAATAATATTTCTAC+CGG | + | chr7_1:49528544-49528563 | Msa1022730:intron | 25.0% |
| ! | AAATAGGTCATTGAAACATA+CGG | - | chr7_1:49528690-49528709 | None:intergenic | 25.0% |
| !!! | AATGACCTATTTTTTAAGTC+TGG | + | chr7_1:49528698-49528717 | Msa1022730:intron | 25.0% |
| !! | ATTTACATCTAATGGGTAAA+AGG | - | chr7_1:49528842-49528861 | None:intergenic | 25.0% |
| ! | ATGAGCAATTTACATCTAAT+GGG | - | chr7_1:49528849-49528868 | None:intergenic | 25.0% |
| ! | AAGAGATATTCAAATCTACA+AGG | - | chr7_1:49529066-49529085 | None:intergenic | 25.0% |
| ! | CAACTTTCAGACTAAAAAAA+AGG | - | chr7_1:49529100-49529119 | None:intergenic | 25.0% |
| TTACAAGGAAATGGAACAAA+GGG | - | chr7_1:49527752-49527771 | None:intergenic | 30.0% | |
| ! | TGTAGCAGAATTTGAACTTT+TGG | - | chr7_1:49528249-49528268 | None:intergenic | 30.0% |
| TTCCACCGAAAAAATGATAT+TGG | + | chr7_1:49528308-49528327 | Msa1022730:intron | 30.0% | |
| !!! | ATCCAATATCATTTTTTCGG+TGG | - | chr7_1:49528313-49528332 | None:intergenic | 30.0% |
| ! | AAGATTTGTCTTTTGTAGTC+TGG | + | chr7_1:49528471-49528490 | Msa1022730:intron | 30.0% |
| ! | AGATTTGTCTTTTGTAGTCT+GGG | + | chr7_1:49528472-49528491 | Msa1022730:intron | 30.0% |
| !! | GGATTTATTTTTCTCTGTCT+TGG | + | chr7_1:49528719-49528738 | Msa1022730:intron | 30.0% |
| GATGAGCAATTTACATCTAA+TGG | - | chr7_1:49528850-49528869 | None:intergenic | 30.0% | |
| TTGAAAACAGTCACAACTAA+AGG | - | chr7_1:49529639-49529658 | None:intergenic | 30.0% | |
| ! | TTAGTTGTGACTGTTTTCAA+AGG | + | chr7_1:49529639-49529658 | Msa1022730:CDS | 30.0% |
| !! | TGTTCATTTTTACAGCGATT+TGG | + | chr7_1:49529855-49529874 | Msa1022730:intron | 30.0% |
| AAAGACAACAAGGAATACTT+GGG | + | chr7_1:49529970-49529989 | Msa1022730:CDS | 30.0% | |
| TAACCATCAGATCATATTAC+AGG | - | chr7_1:49530114-49530133 | None:intergenic | 30.0% | |
| !! | AGACTCTTGTATTGATTGAA+GGG | - | chr7_1:49530202-49530221 | None:intergenic | 30.0% |
| !! | TAGACTCTTGTATTGATTGA+AGG | - | chr7_1:49530203-49530222 | None:intergenic | 30.0% |
| CAATACAAGAGTCTATAGAT+AGG | + | chr7_1:49530208-49530227 | Msa1022730:three_prime_UTR | 30.0% | |
| CAAAATGAGTGGTTTCATTG+TGG | - | chr7_1:49527307-49527326 | None:intergenic | 35.0% | |
| GCTCTTGAGGATAATAATGA+AGG | + | chr7_1:49527416-49527435 | Msa1022730:CDS | 35.0% | |
| TTATAGGGTTGTTAGTGTTG+TGG | + | chr7_1:49527706-49527725 | Msa1022730:intron | 35.0% | |
| CTTACAAGGAAATGGAACAA+AGG | - | chr7_1:49527753-49527772 | None:intergenic | 35.0% | |
| ACACTTCAGATCAAATCCTA+AGG | + | chr7_1:49527822-49527841 | Msa1022730:intron | 35.0% | |
| TCAATGTGTCAGTACTTCAT+AGG | + | chr7_1:49527941-49527960 | Msa1022730:intron | 35.0% | |
| TGTTAGTGTCAGTACTTCAT+AGG | + | chr7_1:49528022-49528041 | Msa1022730:intron | 35.0% | |
| !! | TACAGAGTGTTGTCAAATAG+TGG | - | chr7_1:49528117-49528136 | None:intergenic | 35.0% |
| ACACTGTAGTGTTATATCAC+TGG | + | chr7_1:49528182-49528201 | Msa1022730:intron | 35.0% | |
| ! | AGCAGAATTTGAACTTTTGG+TGG | - | chr7_1:49528246-49528265 | None:intergenic | 35.0% |
| ACTTTGAGCTACATTCAAAG+TGG | - | chr7_1:49528345-49528364 | None:intergenic | 35.0% | |
| TCAATTGTGTTGTGTGTATG+TGG | + | chr7_1:49528407-49528426 | Msa1022730:intron | 35.0% | |
| CAATTGTGTTGTGTGTATGT+GGG | + | chr7_1:49528408-49528427 | Msa1022730:intron | 35.0% | |
| ! | GTCTTCTTTTGCTACTCATT+TGG | + | chr7_1:49528501-49528520 | Msa1022730:intron | 35.0% |
| CATGTGCAAAACTATGATAC+CGG | - | chr7_1:49528566-49528585 | None:intergenic | 35.0% | |
| !!! | TTATAGCATGTTTTGGCAAC+TGG | - | chr7_1:49528801-49528820 | None:intergenic | 35.0% |
| ! | AGACGAGTTATAGCATGTTT+TGG | - | chr7_1:49528808-49528827 | None:intergenic | 35.0% |
| AAAACATGCTATAACTCGTC+TGG | + | chr7_1:49528807-49528826 | Msa1022730:intron | 35.0% | |
| AGATGTAAATTGCTCATCTC+TGG | + | chr7_1:49528852-49528871 | Msa1022730:intron | 35.0% | |
| ! | GATTTGTTTCAAGATGAGTC+TGG | + | chr7_1:49528880-49528899 | Msa1022730:intron | 35.0% |
| !! | TGGTGTTATGTTTGGTATCA+TGG | + | chr7_1:49528900-49528919 | Msa1022730:intron | 35.0% |
| GCAGCAAATCAAAGAATCTT+TGG | - | chr7_1:49529028-49529047 | None:intergenic | 35.0% | |
| CATTATCTGCAGATTATCTG+TGG | + | chr7_1:49529155-49529174 | Msa1022730:intron | 35.0% | |
| TCTGTGGTATAAGAAAATGC+AGG | + | chr7_1:49529171-49529190 | Msa1022730:intron | 35.0% | |
| GAGTGTCATATACTGATGAT+TGG | + | chr7_1:49529234-49529253 | Msa1022730:intron | 35.0% | |
| ATATACTGATGATTGGCACT+AGG | + | chr7_1:49529241-49529260 | Msa1022730:intron | 35.0% | |
| ATCTCAAAAGGAAAATCACC+GGG | - | chr7_1:49529462-49529481 | None:intergenic | 35.0% | |
| GATCTCAAAAGGAAAATCAC+CGG | - | chr7_1:49529463-49529482 | None:intergenic | 35.0% | |
| !!! | TGATTTTCCTTTTGAGATCG+AGG | + | chr7_1:49529464-49529483 | Msa1022730:CDS | 35.0% |
| GTTGAATAGTTCTTTCTCCA+GGG | - | chr7_1:49529494-49529513 | None:intergenic | 35.0% | |
| AGTTGAATAGTTCTTTCTCC+AGG | - | chr7_1:49529495-49529514 | None:intergenic | 35.0% | |
| TATCATTCTCATTCTTCTCG+GGG | - | chr7_1:49529602-49529621 | None:intergenic | 35.0% | |
| CTATCATTCTCATTCTTCTC+GGG | - | chr7_1:49529603-49529622 | None:intergenic | 35.0% | |
| GCTATCATTCTCATTCTTCT+CGG | - | chr7_1:49529604-49529623 | None:intergenic | 35.0% | |
| ! | GTGACTGTTTTCAAAGGAAA+TGG | + | chr7_1:49529645-49529664 | Msa1022730:CDS | 35.0% |
| ! | TAGCTTGTCCATAAAGAATC+CGG | + | chr7_1:49529719-49529738 | Msa1022730:CDS | 35.0% |
| AGATTCATCCGGATTCTTTA+TGG | - | chr7_1:49529730-49529749 | None:intergenic | 35.0% | |
| ! | TGCAAAAAGTTGGTTGTGTT+GGG | - | chr7_1:49529934-49529953 | None:intergenic | 35.0% |
| CATGTATTCCTGCAAAAAGT+TGG | - | chr7_1:49529944-49529963 | None:intergenic | 35.0% | |
| CATGTTCAACAAAGACAACA+AGG | + | chr7_1:49529960-49529979 | Msa1022730:CDS | 35.0% | |
| CAAAGACAACAAGGAATACT+TGG | + | chr7_1:49529969-49529988 | Msa1022730:CDS | 35.0% | |
| AAGACAACAAGGAATACTTG+GGG | + | chr7_1:49529971-49529990 | Msa1022730:CDS | 35.0% | |
| TGTCCTGTAATATGATCTGA+TGG | + | chr7_1:49530108-49530127 | Msa1022730:three_prime_UTR | 35.0% | |
| !!! | TGTTAGGGTTTTGGGTAATG+GGG | - | chr7_1:49527128-49527147 | None:intergenic | 40.0% |
| !!! | GTGTTAGGGTTTTGGGTAAT+GGG | - | chr7_1:49527129-49527148 | None:intergenic | 40.0% |
| !!! | AGTGTTAGGGTTTTGGGTAA+TGG | - | chr7_1:49527130-49527149 | None:intergenic | 40.0% |
| ! | GGGTTTAGTGTTAGGGTTTT+GGG | - | chr7_1:49527136-49527155 | None:intergenic | 40.0% |
| ! | AGGGTTTAGTGTTAGGGTTT+TGG | - | chr7_1:49527137-49527156 | None:intergenic | 40.0% |
| GGTTTGAGGGTTTAGTGTTA+GGG | - | chr7_1:49527143-49527162 | None:intergenic | 40.0% | |
| !! | TCGAAGAAGAGTATCATCAG+CGG | - | chr7_1:49527372-49527391 | None:intergenic | 40.0% |
| AGTGTTGTGGTGATTGTTTG+TGG | + | chr7_1:49527719-49527738 | Msa1022730:intron | 40.0% | |
| ATCAAATCCTAAGGTGTGTC+CGG | + | chr7_1:49527831-49527850 | Msa1022730:intron | 40.0% | |
| CAATGACACATGTCAGATAC+CGG | - | chr7_1:49527853-49527872 | None:intergenic | 40.0% | |
| TAGGTTACTCGTGTTGTCAA+TGG | + | chr7_1:49528041-49528060 | Msa1022730:intron | 40.0% | |
| TACTCGTGTTGTCAATGGAT+CGG | + | chr7_1:49528046-49528065 | Msa1022730:intron | 40.0% | |
| CAAGCAGTGTTGTCAAATGT+CGG | - | chr7_1:49528213-49528232 | None:intergenic | 40.0% | |
| AAATTGCTCATCTCTGGTTG+AGG | + | chr7_1:49528858-49528877 | Msa1022730:intron | 40.0% | |
| !! | GATGAGTCTGGTGTTATGTT+TGG | + | chr7_1:49528892-49528911 | Msa1022730:intron | 40.0% |
| TATGTTTGGTATCATGGTGC+TGG | + | chr7_1:49528906-49528925 | Msa1022730:intron | 40.0% | |
| GCAAAGGCTCAAAATCATAG+TGG | - | chr7_1:49528962-49528981 | None:intergenic | 40.0% | |
| CAAAGAATCTTTGGCATCAC+TGG | - | chr7_1:49529019-49529038 | None:intergenic | 40.0% | |
| ATTGTGGGACAGATCTACAA+GGG | - | chr7_1:49529309-49529328 | None:intergenic | 40.0% | |
| TTGTAGATCTGTCCCACAAT+CGG | + | chr7_1:49529309-49529328 | Msa1022730:intron | 40.0% | |
| ! | CTTTTCCAGCTTGAATTTCC+CGG | + | chr7_1:49529441-49529460 | Msa1022730:intron | 40.0% |
| CAAAGGAAATGGAGTGTGTA+TGG | + | chr7_1:49529656-49529675 | Msa1022730:CDS | 40.0% | |
| AATGGAGTGTGTATGGAGTT+TGG | + | chr7_1:49529663-49529682 | Msa1022730:CDS | 40.0% | |
| ATGGAGTGTGTATGGAGTTT+GGG | + | chr7_1:49529664-49529683 | Msa1022730:CDS | 40.0% | |
| CTATCAATCACAACCTCATC+AGG | - | chr7_1:49529702-49529721 | None:intergenic | 40.0% | |
| CTAAATGCTTACGTGAACTC+AGG | - | chr7_1:49529777-49529796 | None:intergenic | 40.0% | |
| TTTGGATGAAAACCTGCAGA+AGG | + | chr7_1:49529873-49529892 | Msa1022730:CDS | 40.0% | |
| ! | CTGCAAAAAGTTGGTTGTGT+TGG | - | chr7_1:49529935-49529954 | None:intergenic | 40.0% |
| ! | CAACACAACCAACTTTTTGC+AGG | + | chr7_1:49529933-49529952 | Msa1022730:CDS | 40.0% |
| GGGTTTGAGGGTTTAGTGTT+AGG | - | chr7_1:49527144-49527163 | None:intergenic | 45.0% | |
| GAGTGTAGAAAGGGGTTTGA+GGG | - | chr7_1:49527156-49527175 | None:intergenic | 45.0% | |
| TGAGTGTAGAAAGGGGTTTG+AGG | - | chr7_1:49527157-49527176 | None:intergenic | 45.0% | |
| ATTGTGGCGAAGGAGGTTAA+CGG | - | chr7_1:49527291-49527310 | None:intergenic | 45.0% | |
| ! | ACGAGAGGGTACAAAATGAG+TGG | - | chr7_1:49527318-49527337 | None:intergenic | 45.0% |
| !! | AAGAAGAGTATCATCAGCGG+GGG | - | chr7_1:49527369-49527388 | None:intergenic | 45.0% |
| !! | GAAGAAGAGTATCATCAGCG+GGG | - | chr7_1:49527370-49527389 | None:intergenic | 45.0% |
| !! | CGAAGAAGAGTATCATCAGC+GGG | - | chr7_1:49527371-49527390 | None:intergenic | 45.0% |
| ! | CACAGTCGATTTCACTGTCA+AGG | - | chr7_1:49527397-49527416 | None:intergenic | 45.0% |
| TGAAATCGACTGTGCTCTTG+AGG | + | chr7_1:49527403-49527422 | Msa1022730:CDS | 45.0% | |
| CACATGTGTCAGTGTAGTGT+CGG | - | chr7_1:49527879-49527898 | None:intergenic | 45.0% | |
| ACTCGTGTTGTCAATGGATC+GGG | + | chr7_1:49528047-49528066 | Msa1022730:intron | 45.0% | |
| TCTTGCGCTGTTACTAGTTC+AGG | - | chr7_1:49528455-49528474 | None:intergenic | 45.0% | |
| GAACAACGACAGCAGTTATG+AGG | - | chr7_1:49528594-49528613 | None:intergenic | 45.0% | |
| TCAAAATCATAGTGGCTCCG+TGG | - | chr7_1:49528954-49528973 | None:intergenic | 45.0% | |
| GATTGTGGGACAGATCTACA+AGG | - | chr7_1:49529310-49529329 | None:intergenic | 45.0% | |
| ! | TCCCACAATCGGTCTTTTTC+AGG | + | chr7_1:49529320-49529339 | Msa1022730:intron | 45.0% |
| CCCTGAAAAAGACCGATTGT+GGG | - | chr7_1:49529324-49529343 | None:intergenic | 45.0% | |
| !! | CCCACAATCGGTCTTTTTCA+GGG | + | chr7_1:49529321-49529340 | Msa1022730:intron | 45.0% |
| !!! | CCACAATCGGTCTTTTTCAG+GGG | + | chr7_1:49529322-49529341 | Msa1022730:intron | 45.0% |
| AATCACCGGGAAATTCAAGC+TGG | - | chr7_1:49529449-49529468 | None:intergenic | 45.0% | |
| !! | TCAAGTTGACATCCCTAACG+TGG | + | chr7_1:49529548-49529567 | Msa1022730:CDS | 45.0% |
| TGGAGTGTGTATGGAGTTTG+GGG | + | chr7_1:49529665-49529684 | Msa1022730:CDS | 45.0% | |
| !! | AGCTGGTCTTCAGATTCATC+CGG | - | chr7_1:49529741-49529760 | None:intergenic | 45.0% |
| TGAAGACCAGCTGGTATATG+AGG | + | chr7_1:49529749-49529768 | Msa1022730:CDS | 45.0% | |
| GAAGACCAGCTGGTATATGA+GGG | + | chr7_1:49529750-49529769 | Msa1022730:CDS | 45.0% | |
| ACTTGAGAAAAGCCTTCTGC+AGG | - | chr7_1:49529888-49529907 | None:intergenic | 45.0% | |
| TCAAGTATCTCGAGATCCGA+GGG | + | chr7_1:49529902-49529921 | Msa1022730:CDS | 45.0% | |
| ! | TTGTGTTGGGTGTTATCCCT+CGG | - | chr7_1:49529921-49529940 | None:intergenic | 45.0% |
| ACAACAAGGAATACTTGGGG+TGG | + | chr7_1:49529974-49529993 | Msa1022730:CDS | 45.0% | |
| !!! | GTTTTGGGTAATGGGGAAGC+TGG | - | chr7_1:49527121-49527140 | None:intergenic | 50.0% |
| TGCGGAGGTGAGTGTAGAAA+GGG | - | chr7_1:49527165-49527184 | None:intergenic | 50.0% | |
| TTGCGGAGGTGAGTGTAGAA+AGG | - | chr7_1:49527166-49527185 | None:intergenic | 50.0% | |
| TTCTACACTCACCTCCGCAA+TGG | + | chr7_1:49527166-49527185 | Msa1022730:exon | 50.0% | |
| AGCGGTGTACATAGCCATTG+CGG | - | chr7_1:49527183-49527202 | None:intergenic | 50.0% | |
| TGGTTTCATTGTGGCGAAGG+AGG | - | chr7_1:49527298-49527317 | None:intergenic | 50.0% | |
| GAGTGGTTTCATTGTGGCGA+AGG | - | chr7_1:49527301-49527320 | None:intergenic | 50.0% | |
| GAGTGCTAGTGCTACAGAGT+CGG | - | chr7_1:49527802-49527821 | None:intergenic | 50.0% | |
| TCAGATACCGGACACACCTT+AGG | - | chr7_1:49527841-49527860 | None:intergenic | 50.0% | |
| CTCGTGTTGTCAATGGATCG+GGG | + | chr7_1:49528048-49528067 | Msa1022730:intron | 50.0% | |
| ! | GTTTGGTATCATGGTGCTGG+TGG | + | chr7_1:49528909-49528928 | Msa1022730:intron | 50.0% |
| TCATAGTGGCTCCGTGGTTT+CGG | - | chr7_1:49528948-49528967 | None:intergenic | 50.0% | |
| GAGCCTTTGCAAAACCACAG+TGG | + | chr7_1:49528972-49528991 | Msa1022730:intron | 50.0% | |
| !! | GAGCCACTGTGGTTTTGCAA+AGG | - | chr7_1:49528978-49528997 | None:intergenic | 50.0% |
| AAAACCACAGTGGCTCACTG+TGG | + | chr7_1:49528982-49529001 | Msa1022730:intron | 50.0% | |
| ACAGTGGCTCACTGTGGTTT+GGG | + | chr7_1:49528988-49529007 | Msa1022730:intron | 50.0% | |
| CCCCTGAAAAAGACCGATTG+TGG | - | chr7_1:49529325-49529344 | None:intergenic | 50.0% | |
| !!! | ATCGGTCTTTTTCAGGGGTC+AGG | + | chr7_1:49529327-49529346 | Msa1022730:intron | 50.0% |
| GGGTTGTCCTCGATCTCAAA+AGG | - | chr7_1:49529474-49529493 | None:intergenic | 50.0% | |
| ! | TTTGAGATCGAGGACAACCC+TGG | + | chr7_1:49529474-49529493 | Msa1022730:CDS | 50.0% |
| ! | TCTGTTGAGGTGCCACGTTA+GGG | - | chr7_1:49529563-49529582 | None:intergenic | 50.0% |
| ACCTCAACAGAGTGAGGATG+AGG | + | chr7_1:49529572-49529591 | Msa1022730:CDS | 50.0% | |
| !! | GGTGACTGCTTTTCCTGATG+AGG | + | chr7_1:49529686-49529705 | Msa1022730:CDS | 50.0% |
| GGATGAATCTGAAGACCAGC+TGG | + | chr7_1:49529740-49529759 | Msa1022730:CDS | 50.0% | |
| CTCAAGTATCTCGAGATCCG+AGG | + | chr7_1:49529901-49529920 | Msa1022730:CDS | 50.0% | |
| GCGGAGGTGAGTGTAGAAAG+GGG | - | chr7_1:49527164-49527183 | None:intergenic | 55.0% | |
| GGTGTACATAGCCATTGCGG+AGG | - | chr7_1:49527180-49527199 | None:intergenic | 55.0% | |
| GATTGCGCTGTGGAAGGTTC+TGG | - | chr7_1:49527267-49527286 | None:intergenic | 55.0% | |
| CCGTAAGCGAAGCTACGAGA+GGG | - | chr7_1:49527332-49527351 | None:intergenic | 55.0% | |
| CCCTCTCGTAGCTTCGCTTA+CGG | + | chr7_1:49527329-49527348 | Msa1022730:CDS | 55.0% | |
| TAGTGGCGCTGTAGCACTGT+AGG | - | chr7_1:49528100-49528119 | None:intergenic | 55.0% | |
| TTGCGCCTTTGCCGAAACCA+CGG | + | chr7_1:49528934-49528953 | Msa1022730:intron | 55.0% | |
| CAAACCACAGTGAGCCACTG+TGG | - | chr7_1:49528989-49529008 | None:intergenic | 55.0% | |
| CACAGTGGCTCACTGTGGTT+TGG | + | chr7_1:49528987-49529006 | Msa1022730:intron | 55.0% | |
| ! | CTCTGTTGAGGTGCCACGTT+AGG | - | chr7_1:49529564-49529583 | None:intergenic | 55.0% |
| GCCTCATCCTCACTCTGTTG+AGG | - | chr7_1:49529576-49529595 | None:intergenic | 55.0% | |
| CAGGTCCCTCATATACCAGC+TGG | - | chr7_1:49529758-49529777 | None:intergenic | 55.0% | |
| ATGTACACCGCTCTCCGTCG+CGG | + | chr7_1:49527191-49527210 | Msa1022730:CDS | 60.0% | |
| TGGAGGAAGTTGCCGCTGCA+CGG | - | chr7_1:49527247-49527266 | None:intergenic | 60.0% | |
| ! | TGCGCTGTGGAAGGTTCTGG+AGG | - | chr7_1:49527264-49527283 | None:intergenic | 60.0% |
| AACGGCGATTGCGCTGTGGA+AGG | - | chr7_1:49527273-49527292 | None:intergenic | 60.0% | |
| GGTTAACGGCGATTGCGCTG+TGG | - | chr7_1:49527277-49527296 | None:intergenic | 60.0% | |
| GCCGTAAGCGAAGCTACGAG+AGG | - | chr7_1:49527333-49527352 | None:intergenic | 60.0% | |
| TGGCTCCGTGGTTTCGGCAA+AGG | - | chr7_1:49528942-49528961 | None:intergenic | 60.0% | |
| CGTGGCACCTCAACAGAGTG+AGG | + | chr7_1:49529566-49529585 | Msa1022730:CDS | 60.0% | |
| ! | AGAGAGGAGAGGGAGTGCGG+CGG | - | chr7_1:49527222-49527241 | None:intergenic | 65.0% |
| GCGAGAGAGGAGAGGGAGTG+CGG | - | chr7_1:49527225-49527244 | None:intergenic | 65.0% | |
| CTGCACGGCGAGAGAGGAGA+GGG | - | chr7_1:49527232-49527251 | None:intergenic | 65.0% | |
| TCTCCTCTCTCGCCGTGCAG+CGG | + | chr7_1:49527232-49527251 | Msa1022730:CDS | 65.0% | |
| GCTGCACGGCGAGAGAGGAG+AGG | - | chr7_1:49527233-49527252 | None:intergenic | 70.0% | |
| TTGCCGCTGCACGGCGAGAG+AGG | - | chr7_1:49527238-49527257 | None:intergenic | 70.0% | |
| ! | GAGGAGAGGGAGTGCGGCGG+CGG | - | chr7_1:49527219-49527238 | None:intergenic | 75.0% |
| ! | GGCGGCGCCGCGACGGAGAG+CGG | - | chr7_1:49527201-49527220 | None:intergenic | 85.0% |
| ! | GTGCGGCGGCGGCGCCGCGA+CGG | - | chr7_1:49527208-49527227 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 49527117 | 49530236 | 49527117 | ID=Msa1022730;Name=Msa1022730 |
| chr7_1 | mRNA | 49527117 | 49530236 | 49527117 | ID=Msa1022730-mRNA-1;Parent=Msa1022730;Name=Msa1022730-mRNA-1;_AED=0.13;_eAED=0.13;_QI=68|1|1|1|1|1|3|207|253 |
| chr7_1 | exon | 49527117 | 49527451 | 49527117 | ID=Msa1022730-mRNA-1:exon:9674;Parent=Msa1022730-mRNA-1 |
| chr7_1 | exon | 49529450 | 49529784 | 49529450 | ID=Msa1022730-mRNA-1:exon:9675;Parent=Msa1022730-mRNA-1 |
| chr7_1 | exon | 49529870 | 49530236 | 49529870 | ID=Msa1022730-mRNA-1:exon:9676;Parent=Msa1022730-mRNA-1 |
| chr7_1 | five_prime_UTR | 49527117 | 49527184 | 49527117 | ID=Msa1022730-mRNA-1:five_prime_utr;Parent=Msa1022730-mRNA-1 |
| chr7_1 | CDS | 49527185 | 49527451 | 49527185 | ID=Msa1022730-mRNA-1:cds;Parent=Msa1022730-mRNA-1 |
| chr7_1 | CDS | 49529450 | 49529784 | 49529450 | ID=Msa1022730-mRNA-1:cds;Parent=Msa1022730-mRNA-1 |
| chr7_1 | CDS | 49529870 | 49530029 | 49529870 | ID=Msa1022730-mRNA-1:cds;Parent=Msa1022730-mRNA-1 |
| chr7_1 | three_prime_UTR | 49530030 | 49530236 | 49530030 | ID=Msa1022730-mRNA-1:three_prime_utr;Parent=Msa1022730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
