Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223240 | XP_013462528.1 | 98.889 | 90 | 1 | 0 | 1 | 90 | 2 | 91 | 6.54e-58 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223240 | sp|Q93ZJ3|NFD6_ARATH | 68.085 | 47 | 15 | 0 | 44 | 90 | 54 | 100 | 9.17e-16 | 69.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223240 | A0A072V3Y9 | 98.889 | 90 | 1 | 0 | 1 | 90 | 2 | 91 | 3.12e-58 | 182 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0136400 | Msa0223240 | 0.806466 | 8.116524e-50 | -8.615850e-47 |
| Msa0182100 | Msa0223240 | 0.801618 | 8.270984e-49 | -8.615850e-47 |
| Msa0192490 | Msa0223240 | 0.954516 | 2.481051e-112 | -8.615850e-47 |
| Msa0223240 | Msa0277600 | 0.820265 | 7.513404e-53 | -8.615850e-47 |
| Msa0223240 | Msa0382950 | 0.811806 | 5.823964e-51 | -8.615850e-47 |
| Msa0223240 | Msa0432750 | 0.809133 | 2.199601e-50 | -8.615850e-47 |
| Msa0223240 | Msa0433060 | 0.816610 | 5.059375e-52 | -8.615850e-47 |
| Msa0223240 | Msa0479980 | 0.814410 | 1.562578e-51 | -8.615850e-47 |
| Msa0223240 | Msa0524680 | 0.813371 | 2.647636e-51 | -8.615850e-47 |
| Msa0223240 | Msa0585570 | 0.809547 | 1.792517e-50 | -8.615850e-47 |
| Msa0223240 | Msa0663400 | 0.814954 | 1.183983e-51 | -8.615850e-47 |
| Msa0223240 | Msa1022730 | 0.800789 | 1.222126e-48 | -8.615850e-47 |
| Msa0223240 | Msa1085850 | 0.813151 | 2.959740e-51 | -8.615850e-47 |
| Msa0223240 | Msa1341780 | 0.828129 | 1.066991e-54 | -8.615850e-47 |
| Msa0223240 | Msa1344160 | 0.801175 | 1.019443e-48 | -8.615850e-47 |
| Msa0223240 | Msa1353300 | 0.827932 | 1.190593e-54 | -8.615850e-47 |
| Msa0223240 | Msa1371410 | 0.812653 | 3.804109e-51 | -8.615850e-47 |
| Msa0223240 | Msa1415620 | 0.808928 | 2.433876e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223240 | MtrunA17_Chr2g0282671 | 98.889 | 90 | 1 | 0 | 1 | 90 | 2 | 91 | 6.01e-62 | 182 |
| Msa0223240 | MtrunA17_Chr2g0324851 | 60.656 | 61 | 24 | 0 | 30 | 90 | 36 | 96 | 5.48e-21 | 79.3 |
| Msa0223240 | MtrunA17_Chr4g0040461 | 48.837 | 86 | 41 | 2 | 2 | 84 | 4 | 89 | 1.92e-16 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223240 | AT1G28395.6 | 63.158 | 76 | 24 | 2 | 17 | 90 | 22 | 95 | 4.46e-26 | 92.8 |
| Msa0223240 | AT1G28395.4 | 63.158 | 76 | 24 | 2 | 17 | 90 | 22 | 95 | 4.46e-26 | 92.8 |
| Msa0223240 | AT2G33847.1 | 59.140 | 93 | 33 | 3 | 1 | 89 | 1 | 92 | 1.89e-25 | 90.9 |
| Msa0223240 | AT2G33847.2 | 59.302 | 86 | 30 | 3 | 1 | 82 | 1 | 85 | 1.91e-21 | 80.9 |
| Msa0223240 | AT1G28395.5 | 60.563 | 71 | 24 | 2 | 17 | 85 | 22 | 90 | 5.21e-21 | 79.7 |
| Msa0223240 | AT1G28395.2 | 56.757 | 74 | 28 | 2 | 17 | 88 | 22 | 93 | 2.32e-20 | 78.2 |
| Msa0223240 | AT1G28395.3 | 56.757 | 74 | 28 | 2 | 17 | 88 | 22 | 93 | 2.32e-20 | 78.2 |
| Msa0223240 | AT1G28395.1 | 56.757 | 74 | 28 | 2 | 17 | 88 | 22 | 93 | 2.32e-20 | 78.2 |
| Msa0223240 | AT2G20585.5 | 68.085 | 47 | 15 | 0 | 44 | 90 | 54 | 100 | 9.32e-17 | 69.3 |
| Msa0223240 | AT2G20585.1 | 68.085 | 47 | 15 | 0 | 44 | 90 | 54 | 100 | 9.32e-17 | 69.3 |
| Msa0223240 | AT2G20585.2 | 61.702 | 47 | 18 | 0 | 44 | 90 | 54 | 100 | 1.51e-14 | 63.5 |
| Msa0223240 | AT2G20585.4 | 71.053 | 38 | 11 | 0 | 44 | 81 | 54 | 91 | 6.91e-12 | 56.6 |
| Msa0223240 | AT2G20585.3 | 71.053 | 38 | 11 | 0 | 44 | 81 | 54 | 91 | 6.91e-12 | 56.6 |
| Msa0223240 | AT2G20585.6 | 71.053 | 38 | 11 | 0 | 44 | 81 | 54 | 91 | 1.08e-11 | 56.2 |
| Msa0223240 | AT2G20585.7 | 71.053 | 38 | 11 | 0 | 44 | 81 | 54 | 91 | 1.08e-11 | 56.2 |
Find 48 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGCTCGTGATCACATTT+TGG | 0.238797 | 2_1:-72789029 | Msa0223240:intron |
| TTGGAAATTGAGGTTTGTTT+TGG | 0.242742 | 2_1:+72791558 | None:intergenic |
| CGCCGCTTCTCGCGCCAACC+TGG | 0.287298 | 2_1:-72791625 | Msa0223240:CDS |
| CCTCCTTCCCAAAACCCTAT+AGG | 0.369977 | 2_1:-72791734 | Msa0223240:five_prime_UTR |
| CATCCATCTAGAATGCAAAA+AGG | 0.385005 | 2_1:+72788815 | None:intergenic |
| GACCTGCATGCTCAATGTTT+CGG | 0.399809 | 2_1:-72791584 | Msa0223240:CDS |
| TCTCGCGCCAACCTGGCTGC+CGG | 0.401245 | 2_1:-72791618 | Msa0223240:CDS |
| ATCTGGCGGCTGACATCGTT+AGG | 0.403500 | 2_1:+72791661 | None:intergenic |
| GAAGCTGTTGCAGTGTGATA+TGG | 0.410643 | 2_1:+72791405 | None:intergenic |
| GGGACGAACACCGGAGGTTA+TGG | 0.417357 | 2_1:+72791682 | None:intergenic |
| GATGGATGATTGCTGTTATT+CGG | 0.418330 | 2_1:-72788800 | None:intergenic |
| CAATTTCCAATCGCATTTCA+AGG | 0.423789 | 2_1:-72791545 | Msa0223240:intron |
| TGATGAATGACAAGAGGGTT+CGG | 0.425412 | 2_1:-72789715 | Msa0223240:three_prime_UTR |
| TAGGTTTGGCTCCGGCAGCC+AGG | 0.427645 | 2_1:+72791607 | None:intergenic |
| TTTGGCTCCGGCAGCCAGGT+TGG | 0.437067 | 2_1:+72791611 | None:intergenic |
| TTGCCAGTGGAGATGAGTTC+CGG | 0.437830 | 2_1:-72791444 | Msa0223240:CDS |
| TGATTATGTGTGGTAGTGTA+TGG | 0.442341 | 2_1:-72788859 | Msa0223240:three_prime_UTR |
| TCAGTTTCTCGCCACTCTTA+CGG | 0.444023 | 2_1:-72791360 | Msa0223240:CDS |
| GATGAATGACAAGAGGGTTC+GGG | 0.455144 | 2_1:-72789714 | Msa0223240:three_prime_UTR |
| TGAGCATGCAGGTCTAGGTT+TGG | 0.456182 | 2_1:+72791593 | None:intergenic |
| AGCCAGGTTGGCGCGAGAAG+CGG | 0.458390 | 2_1:+72791623 | None:intergenic |
| CTATGATCTTGTAATTATGT+TGG | 0.466003 | 2_1:-72788893 | Msa0223240:three_prime_UTR |
| AACATTGAGCATGCAGGTCT+AGG | 0.474408 | 2_1:+72791588 | None:intergenic |
| GGCGGAGCGAAGGAAGCATC+TGG | 0.487477 | 2_1:+72791644 | None:intergenic |
| TGAAATGCGATTGGAAATTG+AGG | 0.488069 | 2_1:+72791548 | None:intergenic |
| TTTCTCGCCACTCTTACGGC+TGG | 0.489269 | 2_1:-72791356 | Msa0223240:CDS |
| CGCGAGAAGCGGCGGAGCGA+AGG | 0.493060 | 2_1:+72791634 | None:intergenic |
| TGCAGGTCTAGGTTTGGCTC+CGG | 0.513928 | 2_1:+72791599 | None:intergenic |
| TTGTTACCTTGAAATGCGAT+TGG | 0.518636 | 2_1:+72791539 | None:intergenic |
| CAGGTTGGCGCGAGAAGCGG+CGG | 0.521433 | 2_1:+72791626 | None:intergenic |
| ATCCGAAACATTGAGCATGC+AGG | 0.553491 | 2_1:+72791582 | None:intergenic |
| ACGCCGGAACTCATCTCCAC+TGG | 0.567030 | 2_1:+72791441 | None:intergenic |
| ACGAACACCGGAGGTTATGG+TGG | 0.576192 | 2_1:+72791685 | None:intergenic |
| CCACTCTTACGGCTGGACTC+CGG | 0.581950 | 2_1:-72791349 | Msa0223240:CDS |
| GAAATGACAGAAACATTACA+TGG | 0.589799 | 2_1:+72788992 | None:intergenic |
| CCGGAGTCCAGCCGTAAGAG+TGG | 0.594748 | 2_1:+72791349 | None:intergenic |
| CGAACACCGGAGGTTATGGT+GGG | 0.604922 | 2_1:+72791686 | None:intergenic |
| TCTGGCGGCTGACATCGTTA+GGG | 0.611140 | 2_1:+72791662 | None:intergenic |
| CATTTGATTCTGATTATGTG+TGG | 0.620676 | 2_1:-72788869 | Msa0223240:three_prime_UTR |
| GGAGCGAAGGAAGCATCTGG+CGG | 0.642459 | 2_1:+72791647 | None:intergenic |
| ATTGTTGTGTAGATTGCCAG+TGG | 0.651656 | 2_1:-72791457 | Msa0223240:intron |
| GATGTATGATGAATGACAAG+AGG | 0.664602 | 2_1:-72789721 | Msa0223240:exon |
| TCGTTAGGGACGAACACCGG+AGG | 0.667385 | 2_1:+72791676 | None:intergenic |
| TCTTACGGCTGGACTCCGGA+AGG | 0.672791 | 2_1:-72791345 | Msa0223240:intron |
| ACATCGTTAGGGACGAACAC+CGG | 0.677471 | 2_1:+72791673 | None:intergenic |
| ATGTATGATGAATGACAAGA+GGG | 0.680019 | 2_1:-72789720 | Msa0223240:exon |
| TGGAAGCAAAGATTCGACGC+CGG | 0.708954 | 2_1:+72791425 | None:intergenic |
| AAATGACAGAAACATTACAT+GGG | 0.715313 | 2_1:+72788993 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAAATATTTTTTTCTTTT+GGG | - | chr2_1:72790879-72790898 | Msa0223240:intron | 10.0% |
| !! | AAAATAAAGTCAAATTGTTT+CGG | + | chr2_1:72789782-72789801 | None:intergenic | 15.0% |
| !! | TTCATTATTAAGTAATAAAG+AGG | + | chr2_1:72789966-72789985 | None:intergenic | 15.0% |
| !!! | GTATCAAAAATTCATTTTTA+CGG | + | chr2_1:72790012-72790031 | None:intergenic | 15.0% |
| !! | ATTTATATCAATACGAAAAA+AGG | + | chr2_1:72790123-72790142 | None:intergenic | 15.0% |
| !!! | ATGGATTTATTTCAAATTTT+AGG | - | chr2_1:72790404-72790423 | Msa0223240:intron | 15.0% |
| !! | TTCTAAATTGAATGTAAAAT+TGG | - | chr2_1:72790477-72790496 | Msa0223240:intron | 15.0% |
| !!! | GTTCAAATATTTTTTTCTTT+TGG | - | chr2_1:72790878-72790897 | Msa0223240:intron | 15.0% |
| !! | AATTTGAAAAGTTCAAAATA+AGG | + | chr2_1:72791361-72791380 | None:intergenic | 15.0% |
| !! | TGATAGTTAAACAATAATTG+AGG | + | chr2_1:72789232-72789251 | None:intergenic | 20.0% |
| !!! | TTATAATTGCTTTTTTCAAG+TGG | - | chr2_1:72789279-72789298 | Msa0223240:intron | 20.0% |
| !!! | TATAATTGCTTTTTTCAAGT+GGG | - | chr2_1:72789280-72789299 | Msa0223240:intron | 20.0% |
| !! | AATTTATCAAATGCTGAAAT+TGG | - | chr2_1:72789339-72789358 | Msa0223240:intron | 20.0% |
| !! | TATTATTCATAATCTTGTCA+AGG | + | chr2_1:72789604-72789623 | None:intergenic | 20.0% |
| !!! | CTTTATTTTATCTTGTGTTA+TGG | - | chr2_1:72789793-72789812 | Msa0223240:intron | 20.0% |
| !! | AAATAAGTTGTTTATCCAAA+CGG | - | chr2_1:72789854-72789873 | Msa0223240:intron | 20.0% |
| !! | GATATAAATATTAACCTTGT+TGG | - | chr2_1:72790134-72790153 | Msa0223240:intron | 20.0% |
| !! | AAAAGTAAAACAAACAAAGA+TGG | + | chr2_1:72790162-72790181 | None:intergenic | 20.0% |
| !!! | TTTTTCAATTGTACCTTTTT+TGG | - | chr2_1:72790178-72790197 | Msa0223240:intron | 20.0% |
| !! | GTTTGAACAATAAAAATAGT+TGG | + | chr2_1:72790258-72790277 | None:intergenic | 20.0% |
| !!! | AACTTTTTTTCCTTTGAATT+AGG | - | chr2_1:72790284-72790303 | Msa0223240:intron | 20.0% |
| !!! | ACTTTTTTTCCTTTGAATTA+GGG | - | chr2_1:72790285-72790304 | Msa0223240:intron | 20.0% |
| !! | GAATGTTCATTTATATAAAG+AGG | + | chr2_1:72790734-72790753 | None:intergenic | 20.0% |
| !!! | ATCAAATAAAATTTTTCGGA+AGG | + | chr2_1:72791199-72791218 | None:intergenic | 20.0% |
| !!! | CTGCATCAAATAAAATTTTT+CGG | + | chr2_1:72791203-72791222 | None:intergenic | 20.0% |
| !! | CAAATATATAAAATGCTTTG+GGG | + | chr2_1:72791441-72791460 | None:intergenic | 20.0% |
| !! | GCAAATATATAAAATGCTTT+GGG | + | chr2_1:72791442-72791461 | None:intergenic | 20.0% |
| !! | AGCAAATATATAAAATGCTT+TGG | + | chr2_1:72791443-72791462 | None:intergenic | 20.0% |
| !!! | CTTCTTTTTTGATTCCTATA+GGG | + | chr2_1:72788819-72788838 | None:intergenic | 25.0% |
| !!! | TCTTCTTTTTTGATTCCTAT+AGG | + | chr2_1:72788820-72788839 | None:intergenic | 25.0% |
| ! | AATTCGAGCAAACTATTATT+AGG | + | chr2_1:72789044-72789063 | None:intergenic | 25.0% |
| ! | AAGTTTGTATAGACTTTACA+TGG | - | chr2_1:72789391-72789410 | Msa0223240:intron | 25.0% |
| ! | ACTTATTTATTTGCATAAGC+TGG | + | chr2_1:72789513-72789532 | None:intergenic | 25.0% |
| ! | TGTGTTAATTCATAAGTTCT+CGG | - | chr2_1:72789536-72789555 | Msa0223240:intron | 25.0% |
| ! | GTTAATGAAAAAACAGCTTA+TGG | + | chr2_1:72789579-72789598 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+GGG | - | chr2_1:72789855-72789874 | Msa0223240:intron | 25.0% |
| ! | TAAATCTTCTACCAAATGAA+GGG | + | chr2_1:72789906-72789925 | None:intergenic | 25.0% |
| !! | AAGATTTAGTGTCTAGAATA+TGG | - | chr2_1:72789918-72789937 | Msa0223240:intron | 25.0% |
| !! | AGATTTAGTGTCTAGAATAT+GGG | - | chr2_1:72789919-72789938 | Msa0223240:intron | 25.0% |
| !!! | TACGTTTTTTATCCTCTTAT+TGG | - | chr2_1:72790091-72790110 | Msa0223240:intron | 25.0% |
| ! | ACTGACAAATTATTGTGATT+GGG | + | chr2_1:72790575-72790594 | None:intergenic | 25.0% |
| ! | TACTGACAAATTATTGTGAT+TGG | + | chr2_1:72790576-72790595 | None:intergenic | 25.0% |
| !!! | ATCCATAATGGATCTTATAA+GGG | + | chr2_1:72790672-72790691 | None:intergenic | 25.0% |
| !!! | AATCCATAATGGATCTTATA+AGG | + | chr2_1:72790673-72790692 | None:intergenic | 25.0% |
| ! | CTAAATAACACAATCCATAA+TGG | + | chr2_1:72790684-72790703 | None:intergenic | 25.0% |
| ! | TCATTTATATAAAGAGGTCT+AGG | + | chr2_1:72790728-72790747 | None:intergenic | 25.0% |
| ! | CTTAACACACTTAATGTTAA+TGG | - | chr2_1:72791128-72791147 | Msa0223240:intron | 25.0% |
| ! | AACTCAGATGAATATTAAAC+AGG | + | chr2_1:72791270-72791289 | None:intergenic | 25.0% |
| ! | TTCAAATTGTTCTCTGTAAA+AGG | - | chr2_1:72791373-72791392 | Msa0223240:CDS | 25.0% |
| ! | AAATGACAGAAACATTACAT+GGG | + | chr2_1:72791546-72791565 | None:intergenic | 25.0% |
| ! | CTATGATCTTGTAATTATGT+TGG | - | chr2_1:72791643-72791662 | Msa0223240:CDS | 25.0% |
| ! | TTTGATTCCTATAGGGTTTT+GGG | + | chr2_1:72788812-72788831 | None:intergenic | 30.0% |
| !! | TTTTGATTCCTATAGGGTTT+TGG | + | chr2_1:72788813-72788832 | None:intergenic | 30.0% |
| !! | TGGAAATTGAGGTTTGTTTT+GGG | + | chr2_1:72788980-72788999 | None:intergenic | 30.0% |
| !! | TTGGAAATTGAGGTTTGTTT+TGG | + | chr2_1:72788981-72789000 | None:intergenic | 30.0% |
| GTTAAACAATAATTGAGGCA+AGG | + | chr2_1:72789227-72789246 | None:intergenic | 30.0% | |
| GGAAAATAAGCTATTCCAAA+CGG | + | chr2_1:72789492-72789511 | None:intergenic | 30.0% | |
| CAAACATAAGCCAATTCAAA+CGG | - | chr2_1:72789652-72789671 | Msa0223240:intron | 30.0% | |
| AAACATAAGCCAATTCAAAC+GGG | - | chr2_1:72789653-72789672 | Msa0223240:intron | 30.0% | |
| ! | TTTTGCAGCTTAAAGCATAA+GGG | + | chr2_1:72789837-72789856 | None:intergenic | 30.0% |
| ! | ATTTTGCAGCTTAAAGCATA+AGG | + | chr2_1:72789838-72789857 | None:intergenic | 30.0% |
| ATAAGTTGTTTATCCAAACG+GGG | - | chr2_1:72789856-72789875 | Msa0223240:intron | 30.0% | |
| AAATCTTCTACCAAATGAAG+GGG | + | chr2_1:72789905-72789924 | None:intergenic | 30.0% | |
| CTAAATCTTCTACCAAATGA+AGG | + | chr2_1:72789907-72789926 | None:intergenic | 30.0% | |
| ! | GATTTAGTGTCTAGAATATG+GGG | - | chr2_1:72789920-72789939 | Msa0223240:intron | 30.0% |
| ! | ATTTAGTGTCTAGAATATGG+GGG | - | chr2_1:72789921-72789940 | Msa0223240:intron | 30.0% |
| !!! | TTTTATCCTCTTATTGGCTT+AGG | - | chr2_1:72790097-72790116 | Msa0223240:intron | 30.0% |
| !!! | TCAATTGTACCTTTTTTGGA+TGG | - | chr2_1:72790182-72790201 | Msa0223240:intron | 30.0% |
| !!! | CAATTGTACCTTTTTTGGAT+GGG | - | chr2_1:72790183-72790202 | Msa0223240:intron | 30.0% |
| !!! | AATTGTACCTTTTTTGGATG+GGG | - | chr2_1:72790184-72790203 | Msa0223240:intron | 30.0% |
| ! | TGTGTCATTGAGAAAATGTA+GGG | - | chr2_1:72790217-72790236 | Msa0223240:intron | 30.0% |
| ATTGAGAAAATGTAGGGTTT+GGG | - | chr2_1:72790223-72790242 | Msa0223240:intron | 30.0% | |
| !!! | TGTTATTTTTTCCCCTTTGT+AGG | - | chr2_1:72790336-72790355 | Msa0223240:intron | 30.0% |
| !!! | GTTATTTTTTCCCCTTTGTA+GGG | - | chr2_1:72790337-72790356 | Msa0223240:intron | 30.0% |
| ! | ACATCAGTTTTTACGAGATA+TGG | + | chr2_1:72790513-72790532 | None:intergenic | 30.0% |
| GTGAATACAATCAATCAGTA+TGG | + | chr2_1:72790780-72790799 | None:intergenic | 30.0% | |
| ATGTATGATGAATGACAAGA+GGG | - | chr2_1:72790816-72790835 | Msa0223240:intron | 30.0% | |
| GTGATCATACAAATTGTATC+TGG | + | chr2_1:72791016-72791035 | None:intergenic | 30.0% | |
| ! | TTTGTATGATCACTGCATTT+TGG | - | chr2_1:72791023-72791042 | Msa0223240:intron | 30.0% |
| TTGTATGTTGTGTATTGCAA+TGG | - | chr2_1:72791072-72791091 | Msa0223240:intron | 30.0% | |
| TGTATGTTGTGTATTGCAAT+GGG | - | chr2_1:72791073-72791092 | Msa0223240:intron | 30.0% | |
| TATAACCTTAAGCAAGATTC+CGG | - | chr2_1:72791319-72791338 | Msa0223240:intron | 30.0% | |
| !! | ATATATAAAATGCTTTGGGG+TGG | + | chr2_1:72791438-72791457 | None:intergenic | 30.0% |
| AAAACAGCCATGTCAAAATA+GGG | + | chr2_1:72791482-72791501 | None:intergenic | 30.0% | |
| GAAATGACAGAAACATTACA+TGG | + | chr2_1:72791547-72791566 | None:intergenic | 30.0% | |
| CATTTGATTCTGATTATGTG+TGG | - | chr2_1:72791667-72791686 | Msa0223240:exon | 30.0% | |
| ! | TTTCCTTTTTGCATTCTAGA+TGG | - | chr2_1:72791718-72791737 | Msa0223240:five_prime_UTR | 30.0% |
| TGAAATGCGATTGGAAATTG+AGG | + | chr2_1:72788991-72789010 | None:intergenic | 35.0% | |
| CAATTTCCAATCGCATTTCA+AGG | - | chr2_1:72788991-72789010 | Msa0223240:three_prime_UTR | 35.0% | |
| TTGTTACCTTGAAATGCGAT+TGG | + | chr2_1:72789000-72789019 | None:intergenic | 35.0% | |
| CAAGGAAATCATATACCTTC+CGG | + | chr2_1:72789209-72789228 | None:intergenic | 35.0% | |
| TGTGACTGTTCAATTAAGCT+TGG | - | chr2_1:72789364-72789383 | Msa0223240:intron | 35.0% | |
| AAGCACTTGTGACACTATTT+AGG | - | chr2_1:72789464-72789483 | Msa0223240:intron | 35.0% | |
| AGCACTTGTGACACTATTTA+GGG | - | chr2_1:72789465-72789484 | Msa0223240:intron | 35.0% | |
| AATCTTCTACCAAATGAAGG+GGG | + | chr2_1:72789904-72789923 | None:intergenic | 35.0% | |
| ! | TTTAGTGTCTAGAATATGGG+GGG | - | chr2_1:72789922-72789941 | Msa0223240:intron | 35.0% |
| ! | CTGTGTCATTGAGAAAATGT+AGG | - | chr2_1:72790216-72790235 | Msa0223240:intron | 35.0% |
| CATTGAGAAAATGTAGGGTT+TGG | - | chr2_1:72790222-72790241 | Msa0223240:intron | 35.0% | |
| AGAGAAAGACCCTAATTCAA+AGG | + | chr2_1:72790297-72790316 | None:intergenic | 35.0% | |
| TTCATTCTCTCGCTAATCTA+CGG | + | chr2_1:72790455-72790474 | None:intergenic | 35.0% | |
| ATCTCGTAAAAACTGATGTG+TGG | - | chr2_1:72790514-72790533 | Msa0223240:intron | 35.0% | |
| TAAAAACTGATGTGTGGCTA+TGG | - | chr2_1:72790520-72790539 | Msa0223240:intron | 35.0% | |
| AATGGATCTTATAAGGGAGA+AGG | + | chr2_1:72790666-72790685 | None:intergenic | 35.0% | |
| CTCCCTTATAAGATCCATTA+TGG | - | chr2_1:72790667-72790686 | Msa0223240:intron | 35.0% | |
| !!! | GGTCTAGGCATTTTGAAATA+TGG | + | chr2_1:72790713-72790732 | None:intergenic | 35.0% |
| GATGTATGATGAATGACAAG+AGG | - | chr2_1:72790815-72790834 | Msa0223240:intron | 35.0% | |
| !! | GGTTTTGTATTCAAGCTTGA+CGG | - | chr2_1:72791044-72791063 | Msa0223240:intron | 35.0% |
| ATAGCAATCACTTTGCATTG+AGG | + | chr2_1:72791174-72791193 | None:intergenic | 35.0% | |
| AGGCAAAAAACTATAGCATC+CGG | + | chr2_1:72791341-72791360 | None:intergenic | 35.0% | |
| GAAAACAGCCATGTCAAAAT+AGG | + | chr2_1:72791483-72791502 | None:intergenic | 35.0% | |
| !! | ACATGGCTGTTTTCTTGTTT+AGG | - | chr2_1:72791489-72791508 | Msa0223240:intron | 35.0% |
| ! | TGATTATGTGTGGTAGTGTA+TGG | - | chr2_1:72791677-72791696 | Msa0223240:five_prime_UTR | 35.0% |
| ! | CATCCATCTAGAATGCAAAA+AGG | + | chr2_1:72791724-72791743 | None:intergenic | 35.0% |
| !!! | ATTCCTATAGGGTTTTGGGA+AGG | + | chr2_1:72788808-72788827 | None:intergenic | 40.0% |
| AAAAAACCCACCATAACCTC+CGG | - | chr2_1:72788844-72788863 | Msa0223240:three_prime_UTR | 40.0% | |
| ATTGTTGTGTAGATTGCCAG+TGG | - | chr2_1:72789079-72789098 | Msa0223240:intron | 40.0% | |
| CAACCAAACAAGCGCAAAAT+CGG | + | chr2_1:72789258-72789277 | None:intergenic | 40.0% | |
| AGACTTTACATGGTGACTCT+AGG | - | chr2_1:72789401-72789420 | Msa0223240:intron | 40.0% | |
| GACTTTACATGGTGACTCTA+GGG | - | chr2_1:72789402-72789421 | Msa0223240:intron | 40.0% | |
| GCACTTGTGACACTATTTAG+GGG | - | chr2_1:72789466-72789485 | Msa0223240:intron | 40.0% | |
| GTTTAAGAGCCCGTTTGAAT+TGG | + | chr2_1:72789665-72789684 | None:intergenic | 40.0% | |
| CATATTTCCATAAGCTCTCG+AGG | - | chr2_1:72789726-72789745 | Msa0223240:exon | 40.0% | |
| GGGAAAACACACAGACAATT+AGG | + | chr2_1:72789883-72789902 | None:intergenic | 40.0% | |
| ATCTTCTACCAAATGAAGGG+GGG | + | chr2_1:72789903-72789922 | None:intergenic | 40.0% | |
| AAAAGGCCTAAGCCAATAAG+AGG | + | chr2_1:72790106-72790125 | None:intergenic | 40.0% | |
| AAACAAAGATGGAGCCAACA+AGG | + | chr2_1:72790151-72790170 | None:intergenic | 40.0% | |
| TCTCTTGCTCTCACAATGAA+AGG | - | chr2_1:72790312-72790331 | Msa0223240:intron | 40.0% | |
| ! | GTGGCTATGGTGGAATTTAA+TGG | - | chr2_1:72790533-72790552 | Msa0223240:intron | 40.0% |
| GATCTTATAAGGGAGAAGGA+AGG | + | chr2_1:72790662-72790681 | None:intergenic | 40.0% | |
| TGATGAATGACAAGAGGGTT+CGG | - | chr2_1:72790821-72790840 | Msa0223240:intron | 40.0% | |
| !! | GTTCGGGCAAAGTTTTATGT+AGG | - | chr2_1:72790838-72790857 | Msa0223240:intron | 40.0% |
| ! | GAGGTTAGTCACAAATTCGA+TGG | + | chr2_1:72791155-72791174 | None:intergenic | 40.0% |
| GGTGGCAGCATAAAAATAGA+AGG | + | chr2_1:72791420-72791439 | None:intergenic | 40.0% | |
| !!! | TGCAACACCCTATTTTGACA+TGG | - | chr2_1:72791472-72791491 | Msa0223240:intron | 40.0% |
| ! | TTAGGCTCGTGATCACATTT+TGG | - | chr2_1:72791507-72791526 | Msa0223240:intron | 40.0% |
| ! | TAGGCTCGTGATCACATTTT+GGG | - | chr2_1:72791508-72791527 | Msa0223240:intron | 40.0% |
| AACATTGAGCATGCAGGTCT+AGG | + | chr2_1:72788951-72788970 | None:intergenic | 45.0% | |
| GACCTGCATGCTCAATGTTT+CGG | - | chr2_1:72788952-72788971 | Msa0223240:three_prime_UTR | 45.0% | |
| ATCCGAAACATTGAGCATGC+AGG | + | chr2_1:72788957-72788976 | None:intergenic | 45.0% | |
| GAAGCTGTTGCAGTGTGATA+TGG | + | chr2_1:72789134-72789153 | None:intergenic | 45.0% | |
| TCAGTTTCTCGCCACTCTTA+CGG | - | chr2_1:72789176-72789195 | Msa0223240:intron | 45.0% | |
| AAGCTATCCTCGAGAGCTTA+TGG | + | chr2_1:72789736-72789755 | None:intergenic | 45.0% | |
| ! | TGTGTTTTCCCCCCTTCATT+TGG | - | chr2_1:72789892-72789911 | Msa0223240:intron | 45.0% |
| !!! | TGTACCTTTTTTGGATGGGG+AGG | - | chr2_1:72790187-72790206 | Msa0223240:intron | 45.0% |
| !!! | GTACCTTTTTTGGATGGGGA+GGG | - | chr2_1:72790188-72790207 | Msa0223240:intron | 45.0% |
| TTTCCCTCCCCATCCAAAAA+AGG | + | chr2_1:72790194-72790213 | None:intergenic | 45.0% | |
| TCTTCTCTTGCCCTACAAAG+GGG | + | chr2_1:72790350-72790369 | None:intergenic | 45.0% | |
| GTCTTCTCTTGCCCTACAAA+GGG | + | chr2_1:72790351-72790370 | None:intergenic | 45.0% | |
| AGTCTTCTCTTGCCCTACAA+AGG | + | chr2_1:72790352-72790371 | None:intergenic | 45.0% | |
| TGAAGAGCGAGCATCAAAGA+TGG | - | chr2_1:72790375-72790394 | Msa0223240:intron | 45.0% | |
| GCATCAAAGATGGTGTGACA+TGG | - | chr2_1:72790385-72790404 | Msa0223240:intron | 45.0% | |
| AAACTGATGTGTGGCTATGG+TGG | - | chr2_1:72790523-72790542 | Msa0223240:intron | 45.0% | |
| GATGAATGACAAGAGGGTTC+GGG | - | chr2_1:72790822-72790841 | Msa0223240:intron | 45.0% | |
| ! | ATGTAGGTGCGCTCTGAATA+AGG | - | chr2_1:72790854-72790873 | Msa0223240:intron | 45.0% |
| AGCATCCGGAATCTTGCTTA+AGG | + | chr2_1:72791327-72791346 | None:intergenic | 45.0% | |
| ! | AGGCTCGTGATCACATTTTG+GGG | - | chr2_1:72791509-72791528 | Msa0223240:intron | 45.0% |
| !!! | GTGATCACATTTTGGGGCTT+GGG | - | chr2_1:72791515-72791534 | Msa0223240:intron | 45.0% |
| !!! | TGATCACATTTTGGGGCTTG+GGG | - | chr2_1:72791516-72791535 | Msa0223240:intron | 45.0% |
| !!! | CCTATAGGGTTTTGGGAAGG+AGG | + | chr2_1:72788805-72788824 | None:intergenic | 50.0% |
| CCTCCTTCCCAAAACCCTAT+AGG | - | chr2_1:72788802-72788821 | Msa0223240:three_prime_UTR | 50.0% | |
| ACATCGTTAGGGACGAACAC+CGG | + | chr2_1:72788866-72788885 | None:intergenic | 50.0% | |
| TGAGCATGCAGGTCTAGGTT+TGG | + | chr2_1:72788946-72788965 | None:intergenic | 50.0% | |
| TTGCCAGTGGAGATGAGTTC+CGG | - | chr2_1:72789092-72789111 | Msa0223240:intron | 50.0% | |
| TGGAAGCAAAGATTCGACGC+CGG | + | chr2_1:72789114-72789133 | None:intergenic | 50.0% | |
| !!! | TCGCCGATTTTGCGCTTGTT+TGG | - | chr2_1:72789252-72789271 | Msa0223240:intron | 50.0% |
| !! | TGGTGACTCTAGGGCTTGTT+TGG | - | chr2_1:72789411-72789430 | Msa0223240:intron | 50.0% |
| GACACTATTTAGGGGCCGTT+TGG | - | chr2_1:72789474-72789493 | Msa0223240:intron | 50.0% | |
| CAGACAATTAGGACCCCGTT+TGG | + | chr2_1:72789872-72789891 | None:intergenic | 50.0% | |
| !!! | CGTGATCACATTTTGGGGCT+TGG | - | chr2_1:72791514-72791533 | Msa0223240:intron | 50.0% |
| CGAACACCGGAGGTTATGGT+GGG | + | chr2_1:72788853-72788872 | None:intergenic | 55.0% | |
| ACGAACACCGGAGGTTATGG+TGG | + | chr2_1:72788854-72788873 | None:intergenic | 55.0% | |
| TCTGGCGGCTGACATCGTTA+GGG | + | chr2_1:72788877-72788896 | None:intergenic | 55.0% | |
| ATCTGGCGGCTGACATCGTT+AGG | + | chr2_1:72788878-72788897 | None:intergenic | 55.0% | |
| ! | TGCAGGTCTAGGTTTGGCTC+CGG | + | chr2_1:72788940-72788959 | None:intergenic | 55.0% |
| TTTCTCGCCACTCTTACGGC+TGG | - | chr2_1:72789180-72789199 | Msa0223240:intron | 55.0% | |
| AAGGAAGGAGACAGAGGGAG+AGG | + | chr2_1:72790647-72790666 | None:intergenic | 55.0% | |
| GGGAGAAGGAAGGAGACAGA+GGG | + | chr2_1:72790652-72790671 | None:intergenic | 55.0% | |
| AGGGAGAAGGAAGGAGACAG+AGG | + | chr2_1:72790653-72790672 | None:intergenic | 55.0% | |
| GGGACGAACACCGGAGGTTA+TGG | + | chr2_1:72788857-72788876 | None:intergenic | 60.0% | |
| TCGTTAGGGACGAACACCGG+AGG | + | chr2_1:72788863-72788882 | None:intergenic | 60.0% | |
| !! | GGAGCGAAGGAAGCATCTGG+CGG | + | chr2_1:72788892-72788911 | None:intergenic | 60.0% |
| ACGCCGGAACTCATCTCCAC+TGG | + | chr2_1:72789098-72789117 | None:intergenic | 60.0% | |
| CCACTCTTACGGCTGGACTC+CGG | - | chr2_1:72789187-72789206 | Msa0223240:intron | 60.0% | |
| TCTTACGGCTGGACTCCGGA+AGG | - | chr2_1:72789191-72789210 | Msa0223240:intron | 60.0% | |
| !! | GGCGGAGCGAAGGAAGCATC+TGG | + | chr2_1:72788895-72788914 | None:intergenic | 65.0% |
| ! | AGCCAGGTTGGCGCGAGAAG+CGG | + | chr2_1:72788916-72788935 | None:intergenic | 65.0% |
| ! | TTTGGCTCCGGCAGCCAGGT+TGG | + | chr2_1:72788928-72788947 | None:intergenic | 65.0% |
| ! | TAGGTTTGGCTCCGGCAGCC+AGG | + | chr2_1:72788932-72788951 | None:intergenic | 65.0% |
| CCGGAGTCCAGCCGTAAGAG+TGG | + | chr2_1:72789190-72789209 | None:intergenic | 65.0% | |
| ! | CAGGTTGGCGCGAGAAGCGG+CGG | + | chr2_1:72788913-72788932 | None:intergenic | 70.0% |
| TCTCGCGCCAACCTGGCTGC+CGG | - | chr2_1:72788918-72788937 | Msa0223240:three_prime_UTR | 70.0% | |
| CGCGAGAAGCGGCGGAGCGA+AGG | + | chr2_1:72788905-72788924 | None:intergenic | 75.0% | |
| CGCCGCTTCTCGCGCCAACC+TGG | - | chr2_1:72788911-72788930 | Msa0223240:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 72788802 | 72791756 | 72788802 | ID=Msa0223240;Name=Msa0223240 |
| chr2_1 | mRNA | 72788802 | 72791756 | 72788802 | ID=Msa0223240-mRNA-1;Parent=Msa0223240;Name=Msa0223240-mRNA-1;_AED=0.31;_eAED=0.31;_QI=80|1|1|1|0.33|0.25|4|282|90 |
| chr2_1 | exon | 72788802 | 72789047 | 72788802 | ID=Msa0223240-mRNA-1:exon:21192;Parent=Msa0223240-mRNA-1 |
| chr2_1 | exon | 72789699 | 72789754 | 72789699 | ID=Msa0223240-mRNA-1:exon:21191;Parent=Msa0223240-mRNA-1 |
| chr2_1 | exon | 72791346 | 72791467 | 72791346 | ID=Msa0223240-mRNA-1:exon:21190;Parent=Msa0223240-mRNA-1 |
| chr2_1 | exon | 72791546 | 72791756 | 72791546 | ID=Msa0223240-mRNA-1:exon:21189;Parent=Msa0223240-mRNA-1 |
| chr2_1 | five_prime_UTR | 72791677 | 72791756 | 72791677 | ID=Msa0223240-mRNA-1:five_prime_utr;Parent=Msa0223240-mRNA-1 |
| chr2_1 | CDS | 72791546 | 72791676 | 72791546 | ID=Msa0223240-mRNA-1:cds;Parent=Msa0223240-mRNA-1 |
| chr2_1 | CDS | 72791346 | 72791467 | 72791346 | ID=Msa0223240-mRNA-1:cds;Parent=Msa0223240-mRNA-1 |
| chr2_1 | CDS | 72789735 | 72789754 | 72789735 | ID=Msa0223240-mRNA-1:cds;Parent=Msa0223240-mRNA-1 |
| chr2_1 | three_prime_UTR | 72789699 | 72789734 | 72789699 | ID=Msa0223240-mRNA-1:three_prime_utr;Parent=Msa0223240-mRNA-1 |
| chr2_1 | three_prime_UTR | 72788802 | 72789047 | 72788802 | ID=Msa0223240-mRNA-1:three_prime_utr;Parent=Msa0223240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
