Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658000 | XP_003629993.1 | 98.347 | 121 | 2 | 0 | 1 | 121 | 1 | 121 | 1.36e-82 | 247 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658000 | sp|Q8LG89|BABL_ARATH | 60.156 | 128 | 43 | 1 | 1 | 120 | 1 | 128 | 1.75e-51 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658000 | G7L9J5 | 98.347 | 121 | 2 | 0 | 1 | 121 | 1 | 121 | 6.51e-83 | 247 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077340 | Msa0658000 | 0.818688 | 1.720128e-52 | -8.615850e-47 |
| Msa0106710 | Msa0658000 | 0.807732 | 4.377247e-50 | -8.615850e-47 |
| Msa0611210 | Msa0658000 | 0.802666 | 5.033985e-49 | -8.615850e-47 |
| Msa0618410 | Msa0658000 | 0.974685 | 1.360332e-138 | -8.615850e-47 |
| Msa0618470 | Msa0658000 | 0.842549 | 2.415858e-58 | -8.615850e-47 |
| Msa0658000 | Msa0658040 | 0.826334 | 2.872660e-54 | -8.615850e-47 |
| Msa0658000 | Msa0661830 | 0.823770 | 1.157909e-53 | -8.615850e-47 |
| Msa0658000 | Msa0693330 | 0.809489 | 1.844921e-50 | -8.615850e-47 |
| Msa0658000 | Msa0693340 | -0.814841 | 1.254441e-51 | -8.615850e-47 |
| Msa0658000 | Msa0702720 | 0.841189 | 5.525352e-58 | -8.615850e-47 |
| Msa0658000 | Msa0702890 | 0.996172 | 2.954642e-224 | -8.615850e-47 |
| Msa0658000 | Msa0795750 | 0.802394 | 5.727121e-49 | -8.615850e-47 |
| Msa0658000 | Msa0829330 | 0.803827 | 2.894541e-49 | -8.615850e-47 |
| Msa0658000 | Msa0833530 | 0.823353 | 1.449982e-53 | -8.615850e-47 |
| Msa0658000 | Msa0919860 | 0.802692 | 4.972567e-49 | -8.615850e-47 |
| Msa0658000 | Msa0933760 | 0.801688 | 8.001064e-49 | -8.615850e-47 |
| Msa0658000 | Msa0967170 | 0.807465 | 4.988325e-50 | -8.615850e-47 |
| Msa0658000 | Msa1028420 | 0.821314 | 4.313265e-53 | -8.615850e-47 |
| Msa0658000 | Msa1072940 | 0.815241 | 1.022546e-51 | -8.615850e-47 |
| Msa0658000 | Msa1089450 | 0.809303 | 2.022696e-50 | -8.615850e-47 |
| Msa0658000 | Msa1160740 | -0.800311 | 1.529473e-48 | -8.615850e-47 |
| Msa0658000 | Msa1160920 | 0.805243 | 1.466500e-49 | -8.615850e-47 |
| Msa0658000 | Msa1184230 | 0.817154 | 3.819958e-52 | -8.615850e-47 |
| Msa0658000 | Msa1225860 | -0.808059 | 3.729809e-50 | -8.615850e-47 |
| Msa0658000 | Msa1271130 | 0.816293 | 5.957965e-52 | -8.615850e-47 |
| Msa0658000 | Msa1325410 | -0.828863 | 7.097513e-55 | -8.615850e-47 |
| Msa0658000 | Msa1341840 | 0.832156 | 1.110294e-55 | -8.615850e-47 |
| Msa0658000 | Msa1345100 | 0.822754 | 2.000033e-53 | -8.615850e-47 |
| Msa0658000 | Msa1440880 | 0.802015 | 6.853990e-49 | -8.615850e-47 |
| Msa0658000 | Msa1452710 | 0.814741 | 1.320202e-51 | -8.615850e-47 |
| Msa0658000 | Msa1461370 | 0.816202 | 6.244741e-52 | -8.615850e-47 |
| Msa0204960 | Msa0658000 | 0.824997 | 5.960745e-54 | -8.615850e-47 |
| Msa0221000 | Msa0658000 | 0.809197 | 2.131060e-50 | -8.615850e-47 |
| Msa0237420 | Msa0658000 | 0.802500 | 5.448346e-49 | -8.615850e-47 |
| Msa0375640 | Msa0658000 | 0.801944 | 7.089091e-49 | -8.615850e-47 |
| Msa0424160 | Msa0658000 | 0.811395 | 7.152193e-51 | -8.615850e-47 |
| Msa0450400 | Msa0658000 | -0.832212 | 1.075409e-55 | -8.615850e-47 |
| Msa0240900 | Msa0658000 | 0.821488 | 3.931190e-53 | -8.615850e-47 |
| Msa0249580 | Msa0658000 | 0.810705 | 1.009396e-50 | -8.615850e-47 |
| Msa0257490 | Msa0658000 | 0.804650 | 1.951382e-49 | -8.615850e-47 |
| Msa0281530 | Msa0658000 | 0.815036 | 1.135761e-51 | -8.615850e-47 |
| Msa0307270 | Msa0658000 | 0.830049 | 3.655546e-55 | -8.615850e-47 |
| Msa0317970 | Msa0658000 | 0.820869 | 5.460227e-53 | -8.615850e-47 |
| Msa0326480 | Msa0658000 | 0.813130 | 2.990897e-51 | -8.615850e-47 |
| Msa0357900 | Msa0658000 | 0.800864 | 1.180146e-48 | -8.615850e-47 |
| Msa0583360 | Msa0658000 | -0.808159 | 3.551105e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658000 | MtrunA17_Chr8g0380901 | 98.347 | 121 | 2 | 0 | 1 | 121 | 1 | 121 | 1.25e-86 | 247 |
| Msa0658000 | MtrunA17_Chr8g0380711 | 77.869 | 122 | 26 | 1 | 1 | 121 | 1 | 122 | 6.34e-57 | 172 |
| Msa0658000 | MtrunA17_Chr3g0125791 | 60.800 | 125 | 44 | 1 | 1 | 120 | 1 | 125 | 5.25e-51 | 157 |
| Msa0658000 | MtrunA17_Chr3g0125761 | 58.268 | 127 | 46 | 2 | 1 | 121 | 1 | 126 | 1.84e-49 | 153 |
| Msa0658000 | MtrunA17_Chr2g0301431 | 55.645 | 124 | 51 | 1 | 1 | 120 | 1 | 124 | 1.33e-45 | 144 |
| Msa0658000 | MtrunA17_Chr2g0323021 | 40.000 | 115 | 64 | 4 | 9 | 119 | 6 | 119 | 2.82e-24 | 92.8 |
| Msa0658000 | MtrunA17_Chr7g0253681 | 38.462 | 117 | 68 | 3 | 8 | 120 | 7 | 123 | 3.40e-22 | 85.5 |
| Msa0658000 | MtrunA17_Chr7g0253701 | 36.066 | 122 | 74 | 3 | 3 | 120 | 1 | 122 | 3.64e-21 | 82.8 |
| Msa0658000 | MtrunA17_Chr7g0253671 | 36.066 | 122 | 74 | 3 | 3 | 120 | 1 | 122 | 3.64e-21 | 82.8 |
| Msa0658000 | MtrunA17_Chr1g0177341 | 39.316 | 117 | 67 | 3 | 7 | 119 | 4 | 120 | 6.08e-21 | 82.4 |
| Msa0658000 | MtrunA17_Chr1g0177331 | 39.316 | 117 | 67 | 3 | 7 | 119 | 4 | 120 | 6.08e-21 | 82.4 |
| Msa0658000 | MtrunA17_Chr7g0253731 | 38.525 | 122 | 68 | 4 | 1 | 118 | 1 | 119 | 1.37e-20 | 81.6 |
| Msa0658000 | MtrunA17_Chr8g0335531 | 42.241 | 116 | 59 | 5 | 11 | 119 | 5 | 119 | 1.79e-20 | 81.6 |
| Msa0658000 | MtrunA17_Chr7g0253761 | 39.837 | 123 | 69 | 3 | 1 | 120 | 1 | 121 | 3.02e-20 | 80.9 |
| Msa0658000 | MtrunA17_Chr1g0205701 | 33.621 | 116 | 68 | 3 | 11 | 119 | 8 | 121 | 6.97e-20 | 80.1 |
| Msa0658000 | MtrunA17_Chr7g0253641 | 39.344 | 122 | 69 | 3 | 1 | 119 | 1 | 120 | 1.21e-19 | 80.5 |
| Msa0658000 | MtrunA17_Chr5g0394321 | 33.043 | 115 | 72 | 2 | 10 | 119 | 8 | 122 | 5.50e-19 | 77.8 |
| Msa0658000 | MtrunA17_Chr1g0211101 | 36.752 | 117 | 68 | 4 | 8 | 120 | 15 | 129 | 5.86e-19 | 77.8 |
| Msa0658000 | MtrunA17_Chr8g0335571 | 39.655 | 116 | 62 | 5 | 11 | 119 | 5 | 119 | 5.87e-19 | 78.2 |
| Msa0658000 | MtrunA17_Chr4g0064041 | 40.000 | 100 | 53 | 2 | 27 | 119 | 190 | 289 | 7.49e-18 | 77.4 |
| Msa0658000 | MtrunA17_Chr4g0064041 | 36.441 | 118 | 67 | 3 | 9 | 119 | 11 | 127 | 1.69e-15 | 70.9 |
| Msa0658000 | MtrunA17_Chr6g0481491 | 35.106 | 94 | 57 | 3 | 28 | 118 | 28 | 120 | 7.19e-17 | 72.8 |
| Msa0658000 | MtrunA17_Chr2g0306461 | 32.258 | 124 | 77 | 3 | 1 | 118 | 1 | 123 | 9.42e-17 | 72.4 |
| Msa0658000 | MtrunA17_Chr6g0483981 | 40.777 | 103 | 52 | 2 | 25 | 118 | 24 | 126 | 1.15e-16 | 74.7 |
| Msa0658000 | MtrunA17_Chr7g0253631 | 38.525 | 122 | 70 | 3 | 1 | 119 | 1 | 120 | 1.31e-15 | 70.1 |
| Msa0658000 | MtrunA17_Chr3g0132701 | 38.596 | 114 | 64 | 5 | 11 | 118 | 7 | 120 | 1.72e-15 | 69.3 |
| Msa0658000 | MtrunA17_Chr6g0459441 | 36.000 | 100 | 59 | 4 | 25 | 120 | 23 | 121 | 2.29e-15 | 68.6 |
| Msa0658000 | MtrunA17_Chr3g0132431 | 39.823 | 113 | 58 | 6 | 11 | 116 | 7 | 116 | 5.20e-15 | 67.4 |
| Msa0658000 | MtrunA17_Chr6g0453801 | 30.952 | 126 | 79 | 3 | 1 | 120 | 8 | 131 | 1.92e-14 | 65.9 |
| Msa0658000 | MtrunA17_Chr3g0132511 | 37.719 | 114 | 65 | 5 | 11 | 118 | 7 | 120 | 2.31e-14 | 66.6 |
| Msa0658000 | MtrunA17_Chr8g0387804 | 33.621 | 116 | 63 | 4 | 13 | 120 | 18 | 127 | 8.74e-14 | 63.2 |
| Msa0658000 | MtrunA17_Chr6g0453921 | 34.454 | 119 | 73 | 3 | 7 | 120 | 16 | 134 | 4.19e-13 | 62.4 |
| Msa0658000 | MtrunA17_Chr3g0132411 | 36.752 | 117 | 68 | 5 | 7 | 118 | 42 | 157 | 1.40e-12 | 60.8 |
| Msa0658000 | MtrunA17_Chr1g0150131 | 31.667 | 120 | 73 | 3 | 7 | 118 | 5 | 123 | 1.52e-12 | 61.2 |
| Msa0658000 | MtrunA17_Chr4g0064031 | 33.981 | 103 | 56 | 4 | 24 | 115 | 24 | 125 | 6.06e-12 | 58.9 |
| Msa0658000 | MtrunA17_Chr8g0360371 | 31.304 | 115 | 74 | 2 | 9 | 118 | 5 | 119 | 1.10e-11 | 60.1 |
| Msa0658000 | MtrunA17_Chr4g0001571 | 31.250 | 96 | 64 | 1 | 25 | 118 | 26 | 121 | 2.73e-11 | 57.4 |
| Msa0658000 | MtrunA17_Chr6g0453791 | 32.292 | 96 | 62 | 2 | 28 | 120 | 31 | 126 | 8.01e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658000 | AT2G02850.1 | 60.156 | 128 | 43 | 1 | 1 | 120 | 1 | 128 | 1.78e-52 | 161 |
| Msa0658000 | AT3G17675.1 | 36.066 | 122 | 73 | 3 | 5 | 121 | 7 | 128 | 5.73e-22 | 84.3 |
| Msa0658000 | AT1G17800.1 | 41.176 | 119 | 64 | 5 | 8 | 120 | 18 | 136 | 6.69e-21 | 82.0 |
| Msa0658000 | AT2G32300.1 | 39.796 | 98 | 56 | 2 | 25 | 119 | 23 | 120 | 2.85e-20 | 83.2 |
| Msa0658000 | AT2G32300.2 | 39.796 | 98 | 56 | 2 | 25 | 119 | 53 | 150 | 4.52e-20 | 83.2 |
| Msa0658000 | AT3G60270.1 | 42.857 | 98 | 52 | 3 | 25 | 119 | 23 | 119 | 6.01e-20 | 80.9 |
| Msa0658000 | AT3G27200.1 | 36.975 | 119 | 70 | 4 | 7 | 121 | 5 | 122 | 3.83e-19 | 78.6 |
| Msa0658000 | AT5G26330.1 | 35.652 | 115 | 64 | 4 | 12 | 119 | 9 | 120 | 2.32e-18 | 76.6 |
| Msa0658000 | AT3G60280.1 | 44.898 | 98 | 48 | 4 | 25 | 118 | 21 | 116 | 4.07e-18 | 76.6 |
| Msa0658000 | AT2G44790.1 | 43.137 | 102 | 48 | 5 | 23 | 119 | 27 | 123 | 1.21e-16 | 72.4 |
| Msa0658000 | AT2G31050.1 | 33.071 | 127 | 74 | 4 | 1 | 119 | 1 | 124 | 1.36e-16 | 72.4 |
| Msa0658000 | AT2G26720.1 | 33.333 | 99 | 62 | 2 | 26 | 120 | 27 | 125 | 4.42e-16 | 71.2 |
| Msa0658000 | AT5G07475.1 | 34.821 | 112 | 69 | 3 | 11 | 119 | 13 | 123 | 7.58e-16 | 70.1 |
| Msa0658000 | AT2G25060.1 | 33.613 | 119 | 67 | 3 | 8 | 118 | 15 | 129 | 2.26e-13 | 63.5 |
| Msa0658000 | AT3G20570.1 | 31.858 | 113 | 70 | 3 | 12 | 118 | 15 | 126 | 2.51e-13 | 63.9 |
| Msa0658000 | AT4G12880.1 | 30.081 | 123 | 79 | 4 | 3 | 118 | 1 | 123 | 2.81e-12 | 59.7 |
| Msa0658000 | AT1G22480.1 | 38.793 | 116 | 61 | 5 | 11 | 121 | 4 | 114 | 8.63e-12 | 59.3 |
| Msa0658000 | AT4G31840.1 | 31.667 | 120 | 70 | 4 | 11 | 118 | 6 | 125 | 8.87e-12 | 59.3 |
| Msa0658000 | AT1G48940.1 | 32.308 | 130 | 66 | 8 | 6 | 120 | 3 | 125 | 1.14e-11 | 58.9 |
| Msa0658000 | AT3G18590.1 | 31.496 | 127 | 72 | 7 | 6 | 120 | 3 | 126 | 1.20e-11 | 59.3 |
| Msa0658000 | AT4G27520.1 | 33.913 | 115 | 67 | 3 | 9 | 118 | 16 | 126 | 1.32e-11 | 60.5 |
| Msa0658000 | AT5G53870.1 | 30.952 | 126 | 71 | 5 | 7 | 118 | 2 | 125 | 6.29e-11 | 58.5 |
| Msa0658000 | AT2G27035.1 | 29.661 | 118 | 77 | 3 | 8 | 120 | 8 | 124 | 7.06e-11 | 56.6 |
Find 68 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCCACTTATTTAATTTA+AGG | 0.058031 | 4_3:-68048681 | None:intergenic |
| ATTTACCACTGTCATTATTT+TGG | 0.169638 | 4_3:+68048846 | Msa0658000:three_prime_UTR |
| GATTTGAAGGTAAGTGAATT+TGG | 0.221004 | 4_3:-68047826 | None:intergenic |
| AAATATAAACATAATGAGTT+TGG | 0.254292 | 4_3:+68047665 | Msa0658000:five_prime_UTR |
| AAGTTGAACACTACATTATT+AGG | 0.282780 | 4_3:-68048556 | None:intergenic |
| TAAATACTTCTTCATATTGC+AGG | 0.322954 | 4_3:-68047720 | None:intergenic |
| AGGCCAACCAACAGTGTTAA+AGG | 0.339711 | 4_3:-68047999 | None:intergenic |
| ACCTACACTGTTGGAGGTCC+TGG | 0.340570 | 4_3:+68047968 | Msa0658000:CDS |
| CACCCATTAAGATTTCTTGC+AGG | 0.368254 | 4_3:+68047756 | Msa0658000:five_prime_UTR |
| TTTGTGGGTCACTGCGAGTC+TGG | 0.369480 | 4_3:+68048482 | Msa0658000:CDS |
| TAAAAGTTAAGCAGCATTGA+TGG | 0.375502 | 4_3:-68048516 | None:intergenic |
| GTAGTTCCCTTCAAAACAAT+TGG | 0.383981 | 4_3:-68048812 | None:intergenic |
| AGGCCTGCAAGAAATCTTAA+TGG | 0.392067 | 4_3:-68047759 | None:intergenic |
| TTATCCTTAAATTAAATAAG+TGG | 0.400701 | 4_3:+68048677 | Msa0658000:three_prime_UTR |
| CTACTTCATTTGCAACTTTG+TGG | 0.404030 | 4_3:+68048466 | Msa0658000:CDS |
| AATATAAACATAATGAGTTT+GGG | 0.430122 | 4_3:+68047666 | Msa0658000:five_prime_UTR |
| TGTGAAAGAAAGGGATTTGA+AGG | 0.430605 | 4_3:-68047839 | None:intergenic |
| CTACTATATGTTAGTCATCA+TGG | 0.431538 | 4_3:+68048727 | Msa0658000:three_prime_UTR |
| GCTAGAAAACTGTGAAAGAA+AGG | 0.441460 | 4_3:-68047849 | None:intergenic |
| TACTTCATTTGCAACTTTGT+GGG | 0.443056 | 4_3:+68048467 | Msa0658000:CDS |
| GGAGCAAAAGTGTATAGGTC+AGG | 0.453219 | 4_3:+68048410 | Msa0658000:CDS |
| TAACACTGTTGGTTGGCCTA+AGG | 0.454454 | 4_3:+68048003 | Msa0658000:CDS |
| CTAGTAGAGAAACATGGCTC+TGG | 0.459629 | 4_3:+68047877 | Msa0658000:exon |
| AGGATCAGATAAGGCTTGCT+AGG | 0.465568 | 4_3:+68048435 | Msa0658000:CDS |
| AACACTGTTGGTTGGCCTAA+GGG | 0.479850 | 4_3:+68048004 | Msa0658000:CDS |
| GGACCTTTAACACTGTTGGT+TGG | 0.480078 | 4_3:+68047996 | Msa0658000:CDS |
| TTGGGCAGACCCACGTGTCT+TGG | 0.480551 | 4_3:+68047684 | Msa0658000:five_prime_UTR |
| CTAGAAAACTGTGAAAGAAA+GGG | 0.482984 | 4_3:-68047848 | None:intergenic |
| AGTACACATGCATAAAGAAC+AGG | 0.484146 | 4_3:-68048634 | None:intergenic |
| AGAAACATGGCTCTGGGAAG+AGG | 0.491666 | 4_3:+68047884 | Msa0658000:exon |
| GGCCTGCAAGAAATCTTAAT+GGG | 0.503092 | 4_3:-68047758 | None:intergenic |
| GAATTTGGAATGATGTGATA+AGG | 0.505362 | 4_3:-68047811 | None:intergenic |
| GTGTTAAAGGTCCAACCTCC+AGG | 0.508532 | 4_3:-68047986 | None:intergenic |
| ATATGATTTCTGGGTCTCTC+CGG | 0.514100 | 4_3:+68048774 | Msa0658000:three_prime_UTR |
| GCTGCTACCTACACTGTTGG+AGG | 0.517016 | 4_3:+68047962 | Msa0658000:CDS |
| CAAGAGGAGCAAAAGTGTAT+AGG | 0.522207 | 4_3:+68048405 | Msa0658000:CDS |
| GCCACCACATTGTGAGCTGA+TGG | 0.525344 | 4_3:-68048347 | None:intergenic |
| CATGCTGCTACCTACACTGT+TGG | 0.528640 | 4_3:+68047959 | Msa0658000:CDS |
| CTGTTGGAGGTCCTGGAGGT+TGG | 0.534102 | 4_3:+68047975 | Msa0658000:CDS |
| AAGAAATCTTAATGGGTGGT+TGG | 0.538997 | 4_3:-68047751 | None:intergenic |
| GGTTGGACCTTTAACACTGT+TGG | 0.539100 | 4_3:+68047992 | Msa0658000:CDS |
| TTTAGGGCTGGTGACACACT+TGG | 0.539527 | 4_3:+68048034 | Msa0658000:CDS |
| TCTGGGAAGAGGCAGTGCAT+TGG | 0.544752 | 4_3:+68047895 | Msa0658000:CDS |
| AAATTAAATAAGTGGATAGG+TGG | 0.544930 | 4_3:+68048685 | Msa0658000:three_prime_UTR |
| GGATCAGATAAGGCTTGCTA+GGG | 0.550417 | 4_3:+68048436 | Msa0658000:CDS |
| CTTAAATTAAATAAGTGGAT+AGG | 0.562680 | 4_3:+68048682 | Msa0658000:three_prime_UTR |
| TTGGTTCGCTACATAACATC+CGG | 0.565357 | 4_3:-68048793 | None:intergenic |
| AATTAAATAAGTGGATAGGT+GGG | 0.568337 | 4_3:+68048686 | Msa0658000:three_prime_UTR |
| GGTCAGGAAAGGATCAGATA+AGG | 0.577849 | 4_3:+68048426 | Msa0658000:CDS |
| TAGTAGAGAAACATGGCTCT+GGG | 0.578678 | 4_3:+68047878 | Msa0658000:exon |
| TGAGGAGTGAGTGAAGAGGC+AGG | 0.584806 | 4_3:-68047779 | None:intergenic |
| TAAAGAACAGGTACAACAAG+AGG | 0.594279 | 4_3:-68048622 | None:intergenic |
| AAAAGTGTATAGGTCAGGAA+AGG | 0.608610 | 4_3:+68048415 | Msa0658000:CDS |
| TACACTGTTGGAGGTCCTGG+AGG | 0.611395 | 4_3:+68047971 | Msa0658000:CDS |
| CAAATACTAGTAGAGAAACA+TGG | 0.613492 | 4_3:+68047871 | Msa0658000:exon |
| GTGGTGGCAGTGAACAAAGG+AGG | 0.631663 | 4_3:+68048362 | Msa0658000:CDS |
| GATAGTTGCAAGACACCAAG+AGG | 0.632266 | 4_3:+68048389 | Msa0658000:CDS |
| AATGTGGTGGCAGTGAACAA+AGG | 0.638717 | 4_3:+68048359 | Msa0658000:CDS |
| TCCATCAGCTCACAATGTGG+TGG | 0.645459 | 4_3:+68048346 | Msa0658000:CDS |
| TGGTGGCAGTGAACAAAGGA+GGG | 0.647438 | 4_3:+68048363 | Msa0658000:CDS |
| TAATTGAGGAGTGAGTGAAG+AGG | 0.656376 | 4_3:-68047783 | None:intergenic |
| CTGCAAGAAATCTTAATGGG+TGG | 0.656921 | 4_3:-68047755 | None:intergenic |
| ACTCATCTGACCAAGACACG+TGG | 0.661487 | 4_3:-68047694 | None:intergenic |
| TTAAGCCAAAATAATGACAG+TGG | 0.662793 | 4_3:-68048851 | None:intergenic |
| TCCAGGACCTCCAACAGTGT+AGG | 0.688043 | 4_3:-68047969 | None:intergenic |
| GATCAGATAAGGCTTGCTAG+GGG | 0.699536 | 4_3:+68048437 | Msa0658000:CDS |
| TAGTCCATCAGCTCACAATG+TGG | 0.719459 | 4_3:+68048343 | Msa0658000:CDS |
| CTCATCTGACCAAGACACGT+GGG | 0.723003 | 4_3:-68047693 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAAACATAATGAGTT+TGG | + | chr4_3:68047665-68047684 | Msa0658000:five_prime_UTR | 15.0% |
| !! | AATATAAACATAATGAGTTT+GGG | + | chr4_3:68047666-68047685 | Msa0658000:five_prime_UTR | 15.0% |
| !! | TTATCCTTAAATTAAATAAG+TGG | + | chr4_3:68048677-68048696 | Msa0658000:three_prime_UTR | 15.0% |
| !! | AAATATAAACATAATGAGTT+TGG | + | chr4_3:68047665-68047684 | Msa0658000:five_prime_UTR | 15.0% |
| !! | AATATAAACATAATGAGTTT+GGG | + | chr4_3:68047666-68047685 | Msa0658000:five_prime_UTR | 15.0% |
| !! | TTATCCTTAAATTAAATAAG+TGG | + | chr4_3:68048677-68048696 | Msa0658000:three_prime_UTR | 15.0% |
| !! | TAATAACATTCTTTAACGAT+TGG | - | chr4_3:68048077-68048096 | None:intergenic | 20.0% |
| !! | CATTCAATTAATGATGTATA+TGG | + | chr4_3:68048278-68048297 | Msa0658000:intron | 20.0% |
| !! | TATGGTCTTTATTATAAATC+TGG | + | chr4_3:68048296-68048315 | Msa0658000:intron | 20.0% |
| !!! | CTATCCACTTATTTAATTTA+AGG | - | chr4_3:68048684-68048703 | None:intergenic | 20.0% |
| !! | CTTAAATTAAATAAGTGGAT+AGG | + | chr4_3:68048682-68048701 | Msa0658000:three_prime_UTR | 20.0% |
| !!! | ATTTTGTGTAATATGATTTC+TGG | + | chr4_3:68048764-68048783 | Msa0658000:three_prime_UTR | 20.0% |
| !!! | TTTTGTGTAATATGATTTCT+GGG | + | chr4_3:68048765-68048784 | Msa0658000:three_prime_UTR | 20.0% |
| !! | TAATAACATTCTTTAACGAT+TGG | - | chr4_3:68048077-68048096 | None:intergenic | 20.0% |
| !! | CATTCAATTAATGATGTATA+TGG | + | chr4_3:68048278-68048297 | Msa0658000:intron | 20.0% |
| !! | TATGGTCTTTATTATAAATC+TGG | + | chr4_3:68048296-68048315 | Msa0658000:intron | 20.0% |
| !!! | CTATCCACTTATTTAATTTA+AGG | - | chr4_3:68048684-68048703 | None:intergenic | 20.0% |
| !! | CTTAAATTAAATAAGTGGAT+AGG | + | chr4_3:68048682-68048701 | Msa0658000:three_prime_UTR | 20.0% |
| !!! | ATTTTGTGTAATATGATTTC+TGG | + | chr4_3:68048764-68048783 | Msa0658000:three_prime_UTR | 20.0% |
| !!! | TTTTGTGTAATATGATTTCT+GGG | + | chr4_3:68048765-68048784 | Msa0658000:three_prime_UTR | 20.0% |
| ! | TAAATACTTCTTCATATTGC+AGG | - | chr4_3:68047723-68047742 | None:intergenic | 25.0% |
| !!! | GTGATAAGGTTTTATAATTG+AGG | - | chr4_3:68047800-68047819 | None:intergenic | 25.0% |
| ! | AAAAACAACAGTGTTAAAGT+GGG | - | chr4_3:68048172-68048191 | None:intergenic | 25.0% |
| ! | AAAAAACAACAGTGTTAAAG+TGG | - | chr4_3:68048173-68048192 | None:intergenic | 25.0% |
| ! | AAGTTGAACACTACATTATT+AGG | - | chr4_3:68048559-68048578 | None:intergenic | 25.0% |
| ! | AAATTAAATAAGTGGATAGG+TGG | + | chr4_3:68048685-68048704 | Msa0658000:three_prime_UTR | 25.0% |
| ! | AATTAAATAAGTGGATAGGT+GGG | + | chr4_3:68048686-68048705 | Msa0658000:three_prime_UTR | 25.0% |
| !! | ATTTACCACTGTCATTATTT+TGG | + | chr4_3:68048846-68048865 | Msa0658000:three_prime_UTR | 25.0% |
| ! | TAAATACTTCTTCATATTGC+AGG | - | chr4_3:68047723-68047742 | None:intergenic | 25.0% |
| !!! | GTGATAAGGTTTTATAATTG+AGG | - | chr4_3:68047800-68047819 | None:intergenic | 25.0% |
| ! | AAAAACAACAGTGTTAAAGT+GGG | - | chr4_3:68048172-68048191 | None:intergenic | 25.0% |
| ! | AAAAAACAACAGTGTTAAAG+TGG | - | chr4_3:68048173-68048192 | None:intergenic | 25.0% |
| ! | AAGTTGAACACTACATTATT+AGG | - | chr4_3:68048559-68048578 | None:intergenic | 25.0% |
| ! | AAATTAAATAAGTGGATAGG+TGG | + | chr4_3:68048685-68048704 | Msa0658000:three_prime_UTR | 25.0% |
| ! | AATTAAATAAGTGGATAGGT+GGG | + | chr4_3:68048686-68048705 | Msa0658000:three_prime_UTR | 25.0% |
| !! | ATTTACCACTGTCATTATTT+TGG | + | chr4_3:68048846-68048865 | Msa0658000:three_prime_UTR | 25.0% |
| ! | GAATTTGGAATGATGTGATA+AGG | - | chr4_3:68047814-68047833 | None:intergenic | 30.0% |
| GATTTGAAGGTAAGTGAATT+TGG | - | chr4_3:68047829-68047848 | None:intergenic | 30.0% | |
| CTAGAAAACTGTGAAAGAAA+GGG | - | chr4_3:68047851-68047870 | None:intergenic | 30.0% | |
| CAAATACTAGTAGAGAAACA+TGG | + | chr4_3:68047871-68047890 | Msa0658000:exon | 30.0% | |
| TCTTCAAAACTCTCTTTCAT+CGG | + | chr4_3:68048198-68048217 | Msa0658000:intron | 30.0% | |
| TACTTCATTTGCAACTTTGT+GGG | + | chr4_3:68048467-68048486 | Msa0658000:CDS | 30.0% | |
| ! | TAAAAGTTAAGCAGCATTGA+TGG | - | chr4_3:68048519-68048538 | None:intergenic | 30.0% |
| CTACTATATGTTAGTCATCA+TGG | + | chr4_3:68048727-68048746 | Msa0658000:three_prime_UTR | 30.0% | |
| TTAAGCCAAAATAATGACAG+TGG | - | chr4_3:68048854-68048873 | None:intergenic | 30.0% | |
| ! | GAATTTGGAATGATGTGATA+AGG | - | chr4_3:68047814-68047833 | None:intergenic | 30.0% |
| GATTTGAAGGTAAGTGAATT+TGG | - | chr4_3:68047829-68047848 | None:intergenic | 30.0% | |
| CTAGAAAACTGTGAAAGAAA+GGG | - | chr4_3:68047851-68047870 | None:intergenic | 30.0% | |
| CAAATACTAGTAGAGAAACA+TGG | + | chr4_3:68047871-68047890 | Msa0658000:exon | 30.0% | |
| TCTTCAAAACTCTCTTTCAT+CGG | + | chr4_3:68048198-68048217 | Msa0658000:intron | 30.0% | |
| TACTTCATTTGCAACTTTGT+GGG | + | chr4_3:68048467-68048486 | Msa0658000:CDS | 30.0% | |
| ! | TAAAAGTTAAGCAGCATTGA+TGG | - | chr4_3:68048519-68048538 | None:intergenic | 30.0% |
| CTACTATATGTTAGTCATCA+TGG | + | chr4_3:68048727-68048746 | Msa0658000:three_prime_UTR | 30.0% | |
| TTAAGCCAAAATAATGACAG+TGG | - | chr4_3:68048854-68048873 | None:intergenic | 30.0% | |
| ! | AAGAAATCTTAATGGGTGGT+TGG | - | chr4_3:68047754-68047773 | None:intergenic | 35.0% |
| TGTGAAAGAAAGGGATTTGA+AGG | - | chr4_3:68047842-68047861 | None:intergenic | 35.0% | |
| GCTAGAAAACTGTGAAAGAA+AGG | - | chr4_3:68047852-68047871 | None:intergenic | 35.0% | |
| ACTCCAAACATTACTTCATC+TGG | + | chr4_3:68048121-68048140 | Msa0658000:intron | 35.0% | |
| AGACCAGATGAAGTAATGTT+TGG | - | chr4_3:68048127-68048146 | None:intergenic | 35.0% | |
| ! | AAAAGTGTATAGGTCAGGAA+AGG | + | chr4_3:68048415-68048434 | Msa0658000:CDS | 35.0% |
| CTACTTCATTTGCAACTTTG+TGG | + | chr4_3:68048466-68048485 | Msa0658000:CDS | 35.0% | |
| TAAAGAACAGGTACAACAAG+AGG | - | chr4_3:68048625-68048644 | None:intergenic | 35.0% | |
| AGTACACATGCATAAAGAAC+AGG | - | chr4_3:68048637-68048656 | None:intergenic | 35.0% | |
| !!! | TAGCGAACCAATTGTTTTGA+AGG | + | chr4_3:68048805-68048824 | Msa0658000:three_prime_UTR | 35.0% |
| !!! | AGCGAACCAATTGTTTTGAA+GGG | + | chr4_3:68048806-68048825 | Msa0658000:three_prime_UTR | 35.0% |
| GTAGTTCCCTTCAAAACAAT+TGG | - | chr4_3:68048815-68048834 | None:intergenic | 35.0% | |
| ! | AAGAAATCTTAATGGGTGGT+TGG | - | chr4_3:68047754-68047773 | None:intergenic | 35.0% |
| TGTGAAAGAAAGGGATTTGA+AGG | - | chr4_3:68047842-68047861 | None:intergenic | 35.0% | |
| GCTAGAAAACTGTGAAAGAA+AGG | - | chr4_3:68047852-68047871 | None:intergenic | 35.0% | |
| ACTCCAAACATTACTTCATC+TGG | + | chr4_3:68048121-68048140 | Msa0658000:intron | 35.0% | |
| AGACCAGATGAAGTAATGTT+TGG | - | chr4_3:68048127-68048146 | None:intergenic | 35.0% | |
| ! | AAAAGTGTATAGGTCAGGAA+AGG | + | chr4_3:68048415-68048434 | Msa0658000:CDS | 35.0% |
| CTACTTCATTTGCAACTTTG+TGG | + | chr4_3:68048466-68048485 | Msa0658000:CDS | 35.0% | |
| TAAAGAACAGGTACAACAAG+AGG | - | chr4_3:68048625-68048644 | None:intergenic | 35.0% | |
| AGTACACATGCATAAAGAAC+AGG | - | chr4_3:68048637-68048656 | None:intergenic | 35.0% | |
| !!! | TAGCGAACCAATTGTTTTGA+AGG | + | chr4_3:68048805-68048824 | Msa0658000:three_prime_UTR | 35.0% |
| !!! | AGCGAACCAATTGTTTTGAA+GGG | + | chr4_3:68048806-68048825 | Msa0658000:three_prime_UTR | 35.0% |
| GTAGTTCCCTTCAAAACAAT+TGG | - | chr4_3:68048815-68048834 | None:intergenic | 35.0% | |
| CTGCAAGAAATCTTAATGGG+TGG | - | chr4_3:68047758-68047777 | None:intergenic | 40.0% | |
| CACCCATTAAGATTTCTTGC+AGG | + | chr4_3:68047756-68047775 | Msa0658000:five_prime_UTR | 40.0% | |
| GGCCTGCAAGAAATCTTAAT+GGG | - | chr4_3:68047761-68047780 | None:intergenic | 40.0% | |
| AGGCCTGCAAGAAATCTTAA+TGG | - | chr4_3:68047762-68047781 | None:intergenic | 40.0% | |
| TAATTGAGGAGTGAGTGAAG+AGG | - | chr4_3:68047786-68047805 | None:intergenic | 40.0% | |
| TAGTAGAGAAACATGGCTCT+GGG | + | chr4_3:68047878-68047897 | Msa0658000:exon | 40.0% | |
| ! | GCCTAAGGGAAAACGTTTTA+GGG | + | chr4_3:68048018-68048037 | Msa0658000:CDS | 40.0% |
| ! | CTATACACTTTTGCTCCTCT+TGG | - | chr4_3:68048407-68048426 | None:intergenic | 40.0% |
| ! | CAAGAGGAGCAAAAGTGTAT+AGG | + | chr4_3:68048405-68048424 | Msa0658000:CDS | 40.0% |
| ! | ATATGATTTCTGGGTCTCTC+CGG | + | chr4_3:68048774-68048793 | Msa0658000:three_prime_UTR | 40.0% |
| ! | TTGGTTCGCTACATAACATC+CGG | - | chr4_3:68048796-68048815 | None:intergenic | 40.0% |
| CTGCAAGAAATCTTAATGGG+TGG | - | chr4_3:68047758-68047777 | None:intergenic | 40.0% | |
| CACCCATTAAGATTTCTTGC+AGG | + | chr4_3:68047756-68047775 | Msa0658000:five_prime_UTR | 40.0% | |
| GGCCTGCAAGAAATCTTAAT+GGG | - | chr4_3:68047761-68047780 | None:intergenic | 40.0% | |
| AGGCCTGCAAGAAATCTTAA+TGG | - | chr4_3:68047762-68047781 | None:intergenic | 40.0% | |
| TAATTGAGGAGTGAGTGAAG+AGG | - | chr4_3:68047786-68047805 | None:intergenic | 40.0% | |
| TAGTAGAGAAACATGGCTCT+GGG | + | chr4_3:68047878-68047897 | Msa0658000:exon | 40.0% | |
| ! | GCCTAAGGGAAAACGTTTTA+GGG | + | chr4_3:68048018-68048037 | Msa0658000:CDS | 40.0% |
| ! | CTATACACTTTTGCTCCTCT+TGG | - | chr4_3:68048407-68048426 | None:intergenic | 40.0% |
| ! | CAAGAGGAGCAAAAGTGTAT+AGG | + | chr4_3:68048405-68048424 | Msa0658000:CDS | 40.0% |
| ! | ATATGATTTCTGGGTCTCTC+CGG | + | chr4_3:68048774-68048793 | Msa0658000:three_prime_UTR | 40.0% |
| ! | TTGGTTCGCTACATAACATC+CGG | - | chr4_3:68048796-68048815 | None:intergenic | 40.0% |
| CTAGTAGAGAAACATGGCTC+TGG | + | chr4_3:68047877-68047896 | Msa0658000:exon | 45.0% | |
| GGTTGGACCTTTAACACTGT+TGG | + | chr4_3:68047992-68048011 | Msa0658000:CDS | 45.0% | |
| GGACCTTTAACACTGTTGGT+TGG | + | chr4_3:68047996-68048015 | Msa0658000:CDS | 45.0% | |
| AGGCCAACCAACAGTGTTAA+AGG | - | chr4_3:68048002-68048021 | None:intergenic | 45.0% | |
| !! | TAACACTGTTGGTTGGCCTA+AGG | + | chr4_3:68048003-68048022 | Msa0658000:CDS | 45.0% |
| !! | AACACTGTTGGTTGGCCTAA+GGG | + | chr4_3:68048004-68048023 | Msa0658000:CDS | 45.0% |
| ! | GGCCTAAGGGAAAACGTTTT+AGG | + | chr4_3:68048017-68048036 | Msa0658000:CDS | 45.0% |
| ! | GCCCTAAAACGTTTTCCCTT+AGG | - | chr4_3:68048022-68048041 | None:intergenic | 45.0% |
| !!! | AAGGGAAAACGTTTTAGGGC+TGG | + | chr4_3:68048022-68048041 | Msa0658000:CDS | 45.0% |
| TAGTCCATCAGCTCACAATG+TGG | + | chr4_3:68048343-68048362 | Msa0658000:CDS | 45.0% | |
| AATGTGGTGGCAGTGAACAA+AGG | + | chr4_3:68048359-68048378 | Msa0658000:CDS | 45.0% | |
| GATAGTTGCAAGACACCAAG+AGG | + | chr4_3:68048389-68048408 | Msa0658000:CDS | 45.0% | |
| ! | GGAGCAAAAGTGTATAGGTC+AGG | + | chr4_3:68048410-68048429 | Msa0658000:CDS | 45.0% |
| GGTCAGGAAAGGATCAGATA+AGG | + | chr4_3:68048426-68048445 | Msa0658000:CDS | 45.0% | |
| ! | AGGATCAGATAAGGCTTGCT+AGG | + | chr4_3:68048435-68048454 | Msa0658000:CDS | 45.0% |
| !! | GGATCAGATAAGGCTTGCTA+GGG | + | chr4_3:68048436-68048455 | Msa0658000:CDS | 45.0% |
| !! | GATCAGATAAGGCTTGCTAG+GGG | + | chr4_3:68048437-68048456 | Msa0658000:CDS | 45.0% |
| CTAGTAGAGAAACATGGCTC+TGG | + | chr4_3:68047877-68047896 | Msa0658000:exon | 45.0% | |
| GGTTGGACCTTTAACACTGT+TGG | + | chr4_3:68047992-68048011 | Msa0658000:CDS | 45.0% | |
| GGACCTTTAACACTGTTGGT+TGG | + | chr4_3:68047996-68048015 | Msa0658000:CDS | 45.0% | |
| AGGCCAACCAACAGTGTTAA+AGG | - | chr4_3:68048002-68048021 | None:intergenic | 45.0% | |
| !! | TAACACTGTTGGTTGGCCTA+AGG | + | chr4_3:68048003-68048022 | Msa0658000:CDS | 45.0% |
| !! | AACACTGTTGGTTGGCCTAA+GGG | + | chr4_3:68048004-68048023 | Msa0658000:CDS | 45.0% |
| ! | GGCCTAAGGGAAAACGTTTT+AGG | + | chr4_3:68048017-68048036 | Msa0658000:CDS | 45.0% |
| ! | GCCCTAAAACGTTTTCCCTT+AGG | - | chr4_3:68048022-68048041 | None:intergenic | 45.0% |
| !!! | AAGGGAAAACGTTTTAGGGC+TGG | + | chr4_3:68048022-68048041 | Msa0658000:CDS | 45.0% |
| TAGTCCATCAGCTCACAATG+TGG | + | chr4_3:68048343-68048362 | Msa0658000:CDS | 45.0% | |
| AATGTGGTGGCAGTGAACAA+AGG | + | chr4_3:68048359-68048378 | Msa0658000:CDS | 45.0% | |
| GATAGTTGCAAGACACCAAG+AGG | + | chr4_3:68048389-68048408 | Msa0658000:CDS | 45.0% | |
| ! | GGAGCAAAAGTGTATAGGTC+AGG | + | chr4_3:68048410-68048429 | Msa0658000:CDS | 45.0% |
| GGTCAGGAAAGGATCAGATA+AGG | + | chr4_3:68048426-68048445 | Msa0658000:CDS | 45.0% | |
| ! | AGGATCAGATAAGGCTTGCT+AGG | + | chr4_3:68048435-68048454 | Msa0658000:CDS | 45.0% |
| !! | GGATCAGATAAGGCTTGCTA+GGG | + | chr4_3:68048436-68048455 | Msa0658000:CDS | 45.0% |
| !! | GATCAGATAAGGCTTGCTAG+GGG | + | chr4_3:68048437-68048456 | Msa0658000:CDS | 45.0% |
| CTCATCTGACCAAGACACGT+GGG | - | chr4_3:68047696-68047715 | None:intergenic | 50.0% | |
| ACTCATCTGACCAAGACACG+TGG | - | chr4_3:68047697-68047716 | None:intergenic | 50.0% | |
| !! | AGAAACATGGCTCTGGGAAG+AGG | + | chr4_3:68047884-68047903 | Msa0658000:exon | 50.0% |
| CATGCTGCTACCTACACTGT+TGG | + | chr4_3:68047959-68047978 | Msa0658000:CDS | 50.0% | |
| GTGTTAAAGGTCCAACCTCC+AGG | - | chr4_3:68047989-68048008 | None:intergenic | 50.0% | |
| ! | TTTAGGGCTGGTGACACACT+TGG | + | chr4_3:68048034-68048053 | Msa0658000:CDS | 50.0% |
| TCCATCAGCTCACAATGTGG+TGG | + | chr4_3:68048346-68048365 | Msa0658000:CDS | 50.0% | |
| TGGTGGCAGTGAACAAAGGA+GGG | + | chr4_3:68048363-68048382 | Msa0658000:CDS | 50.0% | |
| CTCATCTGACCAAGACACGT+GGG | - | chr4_3:68047696-68047715 | None:intergenic | 50.0% | |
| ACTCATCTGACCAAGACACG+TGG | - | chr4_3:68047697-68047716 | None:intergenic | 50.0% | |
| !! | AGAAACATGGCTCTGGGAAG+AGG | + | chr4_3:68047884-68047903 | Msa0658000:exon | 50.0% |
| CATGCTGCTACCTACACTGT+TGG | + | chr4_3:68047959-68047978 | Msa0658000:CDS | 50.0% | |
| GTGTTAAAGGTCCAACCTCC+AGG | - | chr4_3:68047989-68048008 | None:intergenic | 50.0% | |
| ! | TTTAGGGCTGGTGACACACT+TGG | + | chr4_3:68048034-68048053 | Msa0658000:CDS | 50.0% |
| TCCATCAGCTCACAATGTGG+TGG | + | chr4_3:68048346-68048365 | Msa0658000:CDS | 50.0% | |
| TGGTGGCAGTGAACAAAGGA+GGG | + | chr4_3:68048363-68048382 | Msa0658000:CDS | 50.0% | |
| TGAGGAGTGAGTGAAGAGGC+AGG | - | chr4_3:68047782-68047801 | None:intergenic | 55.0% | |
| TCTGGGAAGAGGCAGTGCAT+TGG | + | chr4_3:68047895-68047914 | Msa0658000:CDS | 55.0% | |
| GCTGCTACCTACACTGTTGG+AGG | + | chr4_3:68047962-68047981 | Msa0658000:CDS | 55.0% | |
| ACCTACACTGTTGGAGGTCC+TGG | + | chr4_3:68047968-68047987 | Msa0658000:CDS | 55.0% | |
| TCCAGGACCTCCAACAGTGT+AGG | - | chr4_3:68047972-68047991 | None:intergenic | 55.0% | |
| TACACTGTTGGAGGTCCTGG+AGG | + | chr4_3:68047971-68047990 | Msa0658000:CDS | 55.0% | |
| GCCACCACATTGTGAGCTGA+TGG | - | chr4_3:68048350-68048369 | None:intergenic | 55.0% | |
| GTGGTGGCAGTGAACAAAGG+AGG | + | chr4_3:68048362-68048381 | Msa0658000:CDS | 55.0% | |
| TTTGTGGGTCACTGCGAGTC+TGG | + | chr4_3:68048482-68048501 | Msa0658000:CDS | 55.0% | |
| TGAGGAGTGAGTGAAGAGGC+AGG | - | chr4_3:68047782-68047801 | None:intergenic | 55.0% | |
| TCTGGGAAGAGGCAGTGCAT+TGG | + | chr4_3:68047895-68047914 | Msa0658000:CDS | 55.0% | |
| GCTGCTACCTACACTGTTGG+AGG | + | chr4_3:68047962-68047981 | Msa0658000:CDS | 55.0% | |
| ACCTACACTGTTGGAGGTCC+TGG | + | chr4_3:68047968-68047987 | Msa0658000:CDS | 55.0% | |
| TCCAGGACCTCCAACAGTGT+AGG | - | chr4_3:68047972-68047991 | None:intergenic | 55.0% | |
| TACACTGTTGGAGGTCCTGG+AGG | + | chr4_3:68047971-68047990 | Msa0658000:CDS | 55.0% | |
| GCCACCACATTGTGAGCTGA+TGG | - | chr4_3:68048350-68048369 | None:intergenic | 55.0% | |
| GTGGTGGCAGTGAACAAAGG+AGG | + | chr4_3:68048362-68048381 | Msa0658000:CDS | 55.0% | |
| TTTGTGGGTCACTGCGAGTC+TGG | + | chr4_3:68048482-68048501 | Msa0658000:CDS | 55.0% | |
| TTGGGCAGACCCACGTGTCT+TGG | + | chr4_3:68047684-68047703 | Msa0658000:five_prime_UTR | 60.0% | |
| CTGTTGGAGGTCCTGGAGGT+TGG | + | chr4_3:68047975-68047994 | Msa0658000:CDS | 60.0% | |
| TTGGGCAGACCCACGTGTCT+TGG | + | chr4_3:68047684-68047703 | Msa0658000:five_prime_UTR | 60.0% | |
| CTGTTGGAGGTCCTGGAGGT+TGG | + | chr4_3:68047975-68047994 | Msa0658000:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 68047653 | 68048874 | 68047653 | ID=Msa0658000;Name=Msa0658000 |
| chr4_3 | mRNA | 68047653 | 68048874 | 68047653 | ID=Msa0658000-mRNA-1;Parent=Msa0658000;Name=Msa0658000-mRNA-1;_AED=0.03;_eAED=0.03;_QI=237|1|1|1|1|1|2|342|121 |
| chr4_3 | exon | 68047653 | 68048055 | 68047653 | ID=Msa0658000-mRNA-1:exon:19640;Parent=Msa0658000-mRNA-1 |
| chr4_3 | exon | 68048333 | 68048874 | 68048333 | ID=Msa0658000-mRNA-1:exon:19641;Parent=Msa0658000-mRNA-1 |
| chr4_3 | five_prime_UTR | 68047653 | 68047889 | 68047653 | ID=Msa0658000-mRNA-1:five_prime_utr;Parent=Msa0658000-mRNA-1 |
| chr4_3 | CDS | 68047890 | 68048055 | 68047890 | ID=Msa0658000-mRNA-1:cds;Parent=Msa0658000-mRNA-1 |
| chr4_3 | CDS | 68048333 | 68048532 | 68048333 | ID=Msa0658000-mRNA-1:cds;Parent=Msa0658000-mRNA-1 |
| chr4_3 | three_prime_UTR | 68048533 | 68048874 | 68048533 | ID=Msa0658000-mRNA-1:three_prime_utr;Parent=Msa0658000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
