AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1029460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029460 MtrunA17_Chr7g0249831 99.115 113 1 0 1 113 1 113 7.09e-82 234
Msa1029460 MtrunA17_Chr5g0396151 88.496 113 13 0 1 113 1 113 1.71e-73 213
Msa1029460 MtrunA17_Chr7g0249821 70.370 108 31 1 1 108 1 107 1.24e-51 158
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1029460 AT4G10040.1 91.071 112 10 0 1 112 1 112 4.58e-75 218
Msa1029460 AT1G22840.1 89.286 112 12 0 1 112 1 112 2.16e-73 213
Msa1029460 AT1G22840.2 88.095 84 10 0 1 84 1 84 4.72e-52 159

Find 77 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCAATTTATTTATCTTAA+AGG 0.085752 7_1:-62885493 None:intergenic
TTTCATTCATGCTAATATTT+TGG 0.129707 7_1:-62885435 None:intergenic
CTCGCCGGCGGCGGGGTTTC+CGG 0.164134 7_1:-62885832 None:intergenic
GTAGCTTTCCTATAACTTTC+GGG 0.235809 7_1:+62885684 Msa1029460:five_prime_UTR
ATGTATGACCCGAAAGTTAT+AGG 0.236852 7_1:-62885692 None:intergenic
TCGCCGGCGGCGGGGTTTCC+GGG 0.240370 7_1:-62885831 None:intergenic
TGTAGCTTTCCTATAACTTT+CGG 0.256249 7_1:+62885683 Msa1029460:five_prime_UTR
ATCAATGTGGTGTACCTTCT+TGG 0.286109 7_1:-62887481 None:intergenic
GGAAAGCTACACCGCCATTT+TGG 0.290290 7_1:-62885671 None:intergenic
TCAATGTGGTGTACCTTCTT+GGG 0.302950 7_1:-62887480 None:intergenic
CCCAATCTGAATGGTTTGTT+TGG 0.305862 7_1:+62887357 Msa1029460:CDS
GACGCCATTTGAGAAAATTC+TGG 0.306657 7_1:-62885792 None:intergenic
CTTCTTGAGGGTGCGTATAT+TGG 0.326131 7_1:+62887984 Msa1029460:three_prime_UTR
GGTTTGTTTGGAAGGCAATC+TGG 0.326375 7_1:+62887369 Msa1029460:CDS
GTACGAAAATTTAAAATTCC+AGG 0.329136 7_1:-62887868 None:intergenic
AAGATCTTCTCGCCGGCGGC+GGG 0.329325 7_1:-62885840 None:intergenic
TGCATTGCATTGCTTCTTGA+GGG 0.332056 7_1:+62887972 Msa1029460:three_prime_UTR
GCTAACAAAATCGAATGAAA+TGG 0.359165 7_1:+62885565 Msa1029460:five_prime_UTR
TTCCTCTTACTTTCACAAAC+TGG 0.381269 7_1:+62888183 Msa1029460:three_prime_UTR
CAAGAACAAGGCTGTGGATT+GGG 0.392913 7_1:+62887425 Msa1029460:CDS
GGTGGCCCAAAATGCCAAAA+TGG 0.393370 7_1:+62885657 Msa1029460:five_prime_UTR
GAAGATCTTCTCGCCGGCGG+CGG 0.418146 7_1:-62885841 None:intergenic
TCCAAACAAACCATTCAGAT+TGG 0.424075 7_1:-62887358 None:intergenic
GTTAGTTGATTCACCAGTCT+TGG 0.431848 7_1:+62888102 Msa1029460:three_prime_UTR
CTCCAGTTTGTGAAAGTAAG+AGG 0.433459 7_1:-62888185 None:intergenic
ATCTGAATGGTTTGTTTGGA+AGG 0.441498 7_1:+62887361 Msa1029460:CDS
AGGCAATCTGGGACAACTCC+TGG 0.447271 7_1:+62887381 Msa1029460:CDS
AAACTGGAGTTCTTTGTATG+TGG 0.451950 7_1:+62888199 Msa1029460:three_prime_UTR
TTCTTTGTATGTGGATTGAG+AGG 0.456920 7_1:+62888208 Msa1029460:three_prime_UTR
ATCTTAATGCAGTACATCCC+AGG 0.460110 7_1:+62887721 Msa1029460:intron
TTGCATTGCATTGCTTCTTG+AGG 0.464608 7_1:+62887971 Msa1029460:three_prime_UTR
CTAACAAAATCGAATGAAAT+GGG 0.464744 7_1:+62885566 Msa1029460:five_prime_UTR
GTTTGTTTGGAAGGCAATCT+GGG 0.482470 7_1:+62887370 Msa1029460:CDS
CCAAACAAACCATTCAGATT+GGG 0.484079 7_1:-62887357 None:intergenic
AATTTATTTATCTTAAAGGA+TGG 0.485319 7_1:-62885489 None:intergenic
CAAAATCACAAGACCAAGAC+TGG 0.492970 7_1:-62888115 None:intergenic
ACCTTAGGACCCAATCTGAA+TGG 0.493293 7_1:+62887348 Msa1029460:intron
GCTTTATTTGCCAAGAAAAG+TGG 0.493817 7_1:-62887913 None:intergenic
TCCTTCGATGAAGCTCCTCC+CGG 0.495242 7_1:+62885813 Msa1029460:CDS
ACAAGAACAAGGCTGTGGAT+TGG 0.503827 7_1:+62887424 Msa1029460:CDS
AAGAAGCAATGCAATGCAAA+AGG 0.507620 7_1:-62887967 None:intergenic
GTGGCCGGCGCCTTTGTCGA+CGG 0.510944 7_1:-62885889 None:intergenic
CAGTAAACCTTGTTTGTGGC+CGG 0.513860 7_1:-62885904 None:intergenic
GTGTTGCGAAAGAATTGTAT+TGG 0.519266 7_1:-62885758 None:intergenic
GGTGTGGCACTGAGCGCACT+TGG 0.520968 7_1:-62885868 None:intergenic
CCTTTAAGATAAATAAATTG+AGG 0.523855 7_1:+62885493 Msa1029460:five_prime_UTR
AGAACAGTAAACCTTGTTTG+TGG 0.524348 7_1:-62885908 None:intergenic
CAATGTGGTGTACCTTCTTG+GGG 0.542057 7_1:-62887479 None:intergenic
GCTGCAGAGTAGGAATATCC+AGG 0.542193 7_1:-62887399 None:intergenic
ATGTGGATTGAGAGGAGGAT+AGG 0.545231 7_1:+62888216 Msa1029460:three_prime_UTR
TCTTGAGGCTTCTTAAGACC+AGG 0.550991 7_1:-62887760 None:intergenic
CCTCCCGGAAACCCCGCCGC+CGG 0.551439 7_1:+62885828 Msa1029460:CDS
TGAGATTCAGTTTATTGACC+TGG 0.552995 7_1:+62888258 Msa1029460:three_prime_UTR
AGATCTTCTCGCCGGCGGCG+GGG 0.553653 7_1:-62885839 None:intergenic
GGATAGGTTGAATTTCAAGT+TGG 0.556911 7_1:+62888232 Msa1029460:three_prime_UTR
GTTCTTGTTAGCTGCAGAGT+AGG 0.557927 7_1:-62887409 None:intergenic
CAGTGCCACACCGTCGACAA+AGG 0.583975 7_1:+62885879 Msa1029460:CDS
TTTGTATGTGGATTGAGAGG+AGG 0.585787 7_1:+62888211 Msa1029460:three_prime_UTR
ATAAGATCAGCACGTTCTTG+AGG 0.588809 7_1:-62887775 None:intergenic
GTACATCCCAGGGACGAAGA+TGG 0.591227 7_1:+62887732 Msa1029460:intron
TTTGAAGATCTTCTCGCCGG+CGG 0.594334 7_1:-62885844 None:intergenic
TCCGGGAGGAGCTTCATCGA+AGG 0.600967 7_1:-62885814 None:intergenic
AAAGGCGCCGGCCACAAACA+AGG 0.601379 7_1:+62885897 Msa1029460:CDS
ACTGTTTGAGCACAAGCACC+AGG 0.602572 7_1:-62888276 None:intergenic
CTCTGCAGCTAACAAGAACA+AGG 0.605687 7_1:+62887413 Msa1029460:CDS
AGCTAACAAGAACAAGGCTG+TGG 0.608122 7_1:+62887419 Msa1029460:CDS
TCTTAATGCAGTACATCCCA+GGG 0.608747 7_1:+62887722 Msa1029460:intron
CACACCGTCGACAAAGGCGC+CGG 0.616193 7_1:+62885885 Msa1029460:CDS
GTTCAGCAAGTAATCGTACA+AGG 0.624998 7_1:-62887457 None:intergenic
GAACAAGGCTGTGGATTGGG+AGG 0.635538 7_1:+62887428 Msa1029460:CDS
TTACTTGCTGAACCCCAAGA+AGG 0.638569 7_1:+62887467 Msa1029460:CDS
GGCCCAAAATGCCAAAATGG+CGG 0.640587 7_1:+62885660 Msa1029460:five_prime_UTR
CGGCGCCTTTGTCGACGGTG+TGG 0.644445 7_1:-62885884 None:intergenic
CCGGCGGCGGGGTTTCCGGG+AGG 0.653806 7_1:-62885828 None:intergenic
TTGAGAAAATTCTGGAAACG+AGG 0.658526 7_1:-62885784 None:intergenic
AGACTAATATCTGAACACAT+TGG 0.666936 7_1:+62888009 Msa1029460:three_prime_UTR
TCATTGACACGAACATTACG+CGG 0.681478 7_1:-62885537 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATATATTTATTGCA+AGG + chr7_1:62886910-62886929 Msa1029460:intron 10.0%
!! AATTTATTTATCTTAAAGGA+TGG - chr7_1:62885492-62885511 None:intergenic 15.0%
!! AAAAAATGAAAAAGTGATTT+CGG + chr7_1:62885636-62885655 Msa1029460:five_prime_UTR 15.0%
!! TAAATATAATAAGTAATCTG+AGG - chr7_1:62886543-62886562 None:intergenic 15.0%
!! TTATTATATTTACGTAGTTT+AGG + chr7_1:62886551-62886570 Msa1029460:intron 15.0%
!! TATTATATTTACGTAGTTTA+GGG + chr7_1:62886552-62886571 Msa1029460:intron 15.0%
!! ACAATTATTGAAATAACATT+GGG - chr7_1:62886992-62887011 None:intergenic 15.0%
!! TACAATTATTGAAATAACAT+TGG - chr7_1:62886993-62887012 None:intergenic 15.0%
!! CATATGTGAAAAATATTAAA+CGG - chr7_1:62887166-62887185 None:intergenic 15.0%
!! ATAAAAATGTCTATATCAAA+TGG + chr7_1:62887533-62887552 Msa1029460:intron 15.0%
!!! TAAATTCTATTATTTTGAAG+TGG - chr7_1:62887818-62887837 None:intergenic 15.0%
!!! TTTCATTCATGCTAATATTT+TGG - chr7_1:62885438-62885457 None:intergenic 20.0%
!! CCTCAATTTATTTATCTTAA+AGG - chr7_1:62885496-62885515 None:intergenic 20.0%
!!! CCTTTAAGATAAATAAATTG+AGG + chr7_1:62885493-62885512 Msa1029460:five_prime_UTR 20.0%
!! ATTTGATCTCTAAATATCTT+GGG + chr7_1:62886361-62886380 Msa1029460:intron 20.0%
!!! ATGAAAATGTTTTGTAAACT+TGG + chr7_1:62886715-62886734 Msa1029460:intron 20.0%
!! CAATTATTGAAATAACATTG+GGG - chr7_1:62886991-62887010 None:intergenic 20.0%
!! TTACAAAATGACATTATTCA+AGG - chr7_1:62887290-62887309 None:intergenic 20.0%
!! GTTATGCTGTTAATTTATTA+TGG + chr7_1:62887629-62887648 Msa1029460:intron 20.0%
! CTAACAAAATCGAATGAAAT+GGG + chr7_1:62885566-62885585 Msa1029460:five_prime_UTR 25.0%
! AAAAAACGAAAAAACATCAC+AGG - chr7_1:62885981-62886000 None:intergenic 25.0%
!! AATACTTATGTAAGTTGGAT+CGG - chr7_1:62886213-62886232 None:intergenic 25.0%
! TCCAACTTACATAAGTATTA+AGG + chr7_1:62886214-62886233 Msa1029460:intron 25.0%
! ACCTTAATACTTATGTAAGT+TGG - chr7_1:62886218-62886237 None:intergenic 25.0%
! AATCCGTAAACTATAGAAAT+CGG + chr7_1:62886317-62886336 Msa1029460:intron 25.0%
! GATTTGATCTCTAAATATCT+TGG + chr7_1:62886360-62886379 Msa1029460:intron 25.0%
!! CATTTTGCTTAAATGAATAG+TGG + chr7_1:62886463-62886482 Msa1029460:intron 25.0%
! ATGAAAATGTGTTGTAAACT+TGG + chr7_1:62886637-62886656 Msa1029460:intron 25.0%
! TTGTGAAAAAAACCAAAAGA+TGG - chr7_1:62886827-62886846 None:intergenic 25.0%
!!! ATCTTTTGGTTTTTTTCACA+AGG + chr7_1:62886826-62886845 Msa1029460:intron 25.0%
! TGAATGAATTGTGATTAGAA+AGG + chr7_1:62887044-62887063 Msa1029460:intron 25.0%
!! CATTTAGTGTTTTCTACAAT+TGG + chr7_1:62887600-62887619 Msa1029460:intron 25.0%
!!! ATTATGGTTATGTTGATGAT+AGG + chr7_1:62887645-62887664 Msa1029460:intron 25.0%
!! GTACGAAAATTTAAAATTCC+AGG - chr7_1:62887871-62887890 None:intergenic 25.0%
!! TTTTCGTACATTTGATTATG+TGG + chr7_1:62887882-62887901 Msa1029460:three_prime_UTR 25.0%
GCTAACAAAATCGAATGAAA+TGG + chr7_1:62885565-62885584 Msa1029460:five_prime_UTR 30.0%
AAATGAAAAAGTGATTTCGG+TGG + chr7_1:62885639-62885658 Msa1029460:five_prime_UTR 30.0%
TGTAGCTTTCCTATAACTTT+CGG + chr7_1:62885683-62885702 Msa1029460:five_prime_UTR 30.0%
! AGAGAATATGCTATGCTTTT+TGG - chr7_1:62885723-62885742 None:intergenic 30.0%
! GTTTCCAGAATTTTCTCAAA+TGG + chr7_1:62885788-62885807 Msa1029460:exon 30.0%
GAAAAAACTTAACAGCGATT+AGG - chr7_1:62886035-62886054 None:intergenic 30.0%
TGATTGTTCAAGATCTTGTT+AGG + chr7_1:62886071-62886090 Msa1029460:intron 30.0%
GATTGTTCAAGATCTTGTTA+GGG + chr7_1:62886072-62886091 Msa1029460:intron 30.0%
TGTTGAAGCTTGAAATGTTT+AGG + chr7_1:62886124-62886143 Msa1029460:intron 30.0%
ACTCCGATTTCTATAGTTTA+CGG - chr7_1:62886323-62886342 None:intergenic 30.0%
TAGTTTAGGGACTAAATCAA+TGG + chr7_1:62886565-62886584 Msa1029460:intron 30.0%
TGTTGTAAACTTGGTATACT+CGG + chr7_1:62886646-62886665 Msa1029460:intron 30.0%
CTCAGCTAAAAAAAACAAGA+AGG - chr7_1:62887104-62887123 None:intergenic 30.0%
!!! CTTGTTTTTTTTAGCTGAGT+CGG + chr7_1:62887105-62887124 Msa1029460:intron 30.0%
GTTGAATGAACAAAACTCAA+GGG + chr7_1:62887127-62887146 Msa1029460:intron 30.0%
AATGACATTATTCAAGGAGA+GGG - chr7_1:62887284-62887303 None:intergenic 30.0%
AAATGACATTATTCAAGGAG+AGG - chr7_1:62887285-62887304 None:intergenic 30.0%
! TAGTGTTTTCTACAATTGGT+AGG + chr7_1:62887604-62887623 Msa1029460:intron 30.0%
ACGCATATCAGTAAAATACT+TGG - chr7_1:62887693-62887712 None:intergenic 30.0%
AGACTAATATCTGAACACAT+TGG + chr7_1:62888009-62888028 Msa1029460:three_prime_UTR 30.0%
GTAGCTTTCCTATAACTTTC+GGG + chr7_1:62885684-62885703 Msa1029460:five_prime_UTR 35.0%
ATGTATGACCCGAAAGTTAT+AGG - chr7_1:62885695-62885714 None:intergenic 35.0%
GTGTTGCGAAAGAATTGTAT+TGG - chr7_1:62885761-62885780 None:intergenic 35.0%
! TTGAGAAAATTCTGGAAACG+AGG - chr7_1:62885787-62885806 None:intergenic 35.0%
! AGAACAGTAAACCTTGTTTG+TGG - chr7_1:62885911-62885930 None:intergenic 35.0%
!! CGTAGATCTGAGAGTATTAA+GGG - chr7_1:62885955-62885974 None:intergenic 35.0%
GGGTTTAAGAATCTATTGTG+TGG + chr7_1:62886092-62886111 Msa1029460:intron 35.0%
TTGGTTCCCTAATCTCTTAA+TGG + chr7_1:62886397-62886416 Msa1029460:intron 35.0%
TCTCAGCCATTAAGAGATTA+GGG - chr7_1:62886406-62886425 None:intergenic 35.0%
ATCTCAGCCATTAAGAGATT+AGG - chr7_1:62886407-62886426 None:intergenic 35.0%
TTAAACAGCGTTGTCAATCT+TGG + chr7_1:62886426-62886445 Msa1029460:intron 35.0%
CTTGGTATGTTCAGAATGTT+TGG + chr7_1:62886733-62886752 Msa1029460:intron 35.0%
! CAGAATGTTTGGTTCAAATC+AGG + chr7_1:62886744-62886763 Msa1029460:intron 35.0%
!!! GTTTTGTTTGAGAGATGAGA+GGG + chr7_1:62886794-62886813 Msa1029460:intron 35.0%
GAAATAACATTGGGGTGATA+TGG - chr7_1:62886983-62887002 None:intergenic 35.0%
GGTTGAATGAACAAAACTCA+AGG + chr7_1:62887126-62887145 Msa1029460:intron 35.0%
CCAAACAAACCATTCAGATT+GGG - chr7_1:62887360-62887379 None:intergenic 35.0%
TCCAAACAAACCATTCAGAT+TGG - chr7_1:62887361-62887380 None:intergenic 35.0%
!! ATCTGAATGGTTTGTTTGGA+AGG + chr7_1:62887361-62887380 Msa1029460:CDS 35.0%
! TGTTTTCTACAATTGGTAGG+AGG + chr7_1:62887607-62887626 Msa1029460:intron 35.0%
TTGGTTGAAACAGACTTTCA+AGG - chr7_1:62887674-62887693 None:intergenic 35.0%
!! GCTTTATTTGCCAAGAAAAG+TGG - chr7_1:62887916-62887935 None:intergenic 35.0%
AAGAAGCAATGCAATGCAAA+AGG - chr7_1:62887970-62887989 None:intergenic 35.0%
TTCCTCTTACTTTCACAAAC+TGG + chr7_1:62888183-62888202 Msa1029460:three_prime_UTR 35.0%
AAACTGGAGTTCTTTGTATG+TGG + chr7_1:62888199-62888218 Msa1029460:three_prime_UTR 35.0%
! TTCTTTGTATGTGGATTGAG+AGG + chr7_1:62888208-62888227 Msa1029460:three_prime_UTR 35.0%
! GGATAGGTTGAATTTCAAGT+TGG + chr7_1:62888232-62888251 Msa1029460:three_prime_UTR 35.0%
TGAGATTCAGTTTATTGACC+TGG + chr7_1:62888258-62888277 Msa1029460:three_prime_UTR 35.0%
TCATTGACACGAACATTACG+CGG - chr7_1:62885540-62885559 None:intergenic 40.0%
GACGCCATTTGAGAAAATTC+TGG - chr7_1:62885795-62885814 None:intergenic 40.0%
!! GCGTAGATCTGAGAGTATTA+AGG - chr7_1:62885956-62885975 None:intergenic 40.0%
GGATCGGACATAACTGAAAT+TGG - chr7_1:62886197-62886216 None:intergenic 40.0%
! CTTGGGCTTAAATGCACTTT+TGG + chr7_1:62886378-62886397 Msa1029460:intron 40.0%
CTTGGTATACTCGGAATGTT+TGG + chr7_1:62886655-62886674 Msa1029460:intron 40.0%
! TGTTTGGTTCAAATCAGGCA+AGG + chr7_1:62886749-62886768 Msa1029460:intron 40.0%
!!! CGTTTTGTTTGAGAGATGAG+AGG + chr7_1:62886793-62886812 Msa1029460:intron 40.0%
!!! GGTTTTTTTCACAAGGAGAG+AGG + chr7_1:62886833-62886852 Msa1029460:intron 40.0%
! CTTTATTTGTTGCCGACCTT+AGG + chr7_1:62887333-62887352 Msa1029460:intron 40.0%
!! CCCAATCTGAATGGTTTGTT+TGG + chr7_1:62887357-62887376 Msa1029460:CDS 40.0%
GTTTGTTTGGAAGGCAATCT+GGG + chr7_1:62887370-62887389 Msa1029460:CDS 40.0%
GTTCAGCAAGTAATCGTACA+AGG - chr7_1:62887460-62887479 None:intergenic 40.0%
TCAATGTGGTGTACCTTCTT+GGG - chr7_1:62887483-62887502 None:intergenic 40.0%
ATCAATGTGGTGTACCTTCT+TGG - chr7_1:62887484-62887503 None:intergenic 40.0%
! AGAAGGTACACCACATTGAT+TGG + chr7_1:62887484-62887503 Msa1029460:intron 40.0%
CACAGAAATGCCAATCAATG+TGG - chr7_1:62887497-62887516 None:intergenic 40.0%
ATCTTAATGCAGTACATCCC+AGG + chr7_1:62887721-62887740 Msa1029460:intron 40.0%
TCTTAATGCAGTACATCCCA+GGG + chr7_1:62887722-62887741 Msa1029460:intron 40.0%
ATAAGATCAGCACGTTCTTG+AGG - chr7_1:62887778-62887797 None:intergenic 40.0%
! TGCAGTATGCTTTTCAAACC+TGG + chr7_1:62887850-62887869 Msa1029460:three_prime_UTR 40.0%
TTGCATTGCATTGCTTCTTG+AGG + chr7_1:62887971-62887990 Msa1029460:three_prime_UTR 40.0%
TGCATTGCATTGCTTCTTGA+GGG + chr7_1:62887972-62887991 Msa1029460:three_prime_UTR 40.0%
! GTTAGTTGATTCACCAGTCT+TGG + chr7_1:62888102-62888121 Msa1029460:three_prime_UTR 40.0%
CAAAATCACAAGACCAAGAC+TGG - chr7_1:62888118-62888137 None:intergenic 40.0%
CTCCAGTTTGTGAAAGTAAG+AGG - chr7_1:62888188-62888207 None:intergenic 40.0%
! TTTGTATGTGGATTGAGAGG+AGG + chr7_1:62888211-62888230 Msa1029460:three_prime_UTR 40.0%
!! CACCGCCATTTTGGCATTTT+GGG - chr7_1:62885665-62885684 None:intergenic 45.0%
!! ACACCGCCATTTTGGCATTT+TGG - chr7_1:62885666-62885685 None:intergenic 45.0%
!!! GGTTTTGAAGATCTTCTCGC+CGG - chr7_1:62885850-62885869 None:intergenic 45.0%
! CAGTAAACCTTGTTTGTGGC+CGG - chr7_1:62885907-62885926 None:intergenic 45.0%
GTTCAAATCAGGCAAGGAGA+GGG + chr7_1:62886755-62886774 Msa1029460:intron 45.0%
! GAGGGCAAACAACCATCTTT+TGG + chr7_1:62886812-62886831 Msa1029460:intron 45.0%
! ATTATTCAAGGAGAGGGCAC+AGG - chr7_1:62887278-62887297 None:intergenic 45.0%
TTCAGATTGGGTCCTAAGGT+CGG - chr7_1:62887348-62887367 None:intergenic 45.0%
ACCTTAGGACCCAATCTGAA+TGG + chr7_1:62887348-62887367 Msa1029460:intron 45.0%
ACCATTCAGATTGGGTCCTA+AGG - chr7_1:62887352-62887371 None:intergenic 45.0%
! GGTTTGTTTGGAAGGCAATC+TGG + chr7_1:62887369-62887388 Msa1029460:CDS 45.0%
GTTCTTGTTAGCTGCAGAGT+AGG - chr7_1:62887412-62887431 None:intergenic 45.0%
CTCTGCAGCTAACAAGAACA+AGG + chr7_1:62887413-62887432 Msa1029460:CDS 45.0%
AGCTAACAAGAACAAGGCTG+TGG + chr7_1:62887419-62887438 Msa1029460:CDS 45.0%
ACAAGAACAAGGCTGTGGAT+TGG + chr7_1:62887424-62887443 Msa1029460:CDS 45.0%
CAAGAACAAGGCTGTGGATT+GGG + chr7_1:62887425-62887444 Msa1029460:CDS 45.0%
! TTACTTGCTGAACCCCAAGA+AGG + chr7_1:62887467-62887486 Msa1029460:CDS 45.0%
CAATGTGGTGTACCTTCTTG+GGG - chr7_1:62887482-62887501 None:intergenic 45.0%
GAAAAACCATCTTCGTCCCT+GGG - chr7_1:62887741-62887760 None:intergenic 45.0%
TCTTGAGGCTTCTTAAGACC+AGG - chr7_1:62887763-62887782 None:intergenic 45.0%
!!! GGTGCAATAGCCACTTTTCT+TGG + chr7_1:62887903-62887922 Msa1029460:three_prime_UTR 45.0%
! CTTCTTGAGGGTGCGTATAT+TGG + chr7_1:62887984-62888003 Msa1029460:three_prime_UTR 45.0%
! ATGTGGATTGAGAGGAGGAT+AGG + chr7_1:62888216-62888235 Msa1029460:three_prime_UTR 45.0%
!!! TTTTTAAAAAATATATTGTA+AGG + chr7_1:62886596-62886615 Msa1029460:intron 5.0%
GGTGGCCCAAAATGCCAAAA+TGG + chr7_1:62885657-62885676 Msa1029460:five_prime_UTR 50.0%
GGCCCAAAATGCCAAAATGG+CGG + chr7_1:62885660-62885679 Msa1029460:five_prime_UTR 50.0%
! GGAAAGCTACACCGCCATTT+TGG - chr7_1:62885674-62885693 None:intergenic 50.0%
TTTGAAGATCTTCTCGCCGG+CGG - chr7_1:62885847-62885866 None:intergenic 50.0%
GCGTTGTCAATCTTGGATCG+TGG + chr7_1:62886433-62886452 Msa1029460:intron 50.0%
GGTTCAAATCAGGCAAGGAG+AGG + chr7_1:62886754-62886773 Msa1029460:intron 50.0%
GCTGCAGAGTAGGAATATCC+AGG - chr7_1:62887402-62887421 None:intergenic 50.0%
GGAAAAACCATCTTCGTCCC+TGG - chr7_1:62887742-62887761 None:intergenic 50.0%
! GGGACGAAGATGGTTTTTCC+TGG + chr7_1:62887742-62887761 Msa1029460:CDS 50.0%
TCCTTCGATGAAGCTCCTCC+CGG + chr7_1:62885813-62885832 Msa1029460:CDS 55.0%
ATCAGGCAAGGAGAGGGTTC+TGG + chr7_1:62886761-62886780 Msa1029460:intron 55.0%
! AGGCAATCTGGGACAACTCC+TGG + chr7_1:62887381-62887400 Msa1029460:CDS 55.0%
!! GAACAAGGCTGTGGATTGGG+AGG + chr7_1:62887428-62887447 Msa1029460:CDS 55.0%
GTACATCCCAGGGACGAAGA+TGG + chr7_1:62887732-62887751 Msa1029460:intron 55.0%
TCCGGGAGGAGCTTCATCGA+AGG - chr7_1:62885817-62885836 None:intergenic 60.0%
CAGTGCCACACCGTCGACAA+AGG + chr7_1:62885879-62885898 Msa1029460:CDS 60.0%
!! AAAGGCGCCGGCCACAAACA+AGG + chr7_1:62885897-62885916 Msa1029460:CDS 60.0%
AAGATCTTCTCGCCGGCGGC+GGG - chr7_1:62885843-62885862 None:intergenic 65.0%
GAAGATCTTCTCGCCGGCGG+CGG - chr7_1:62885844-62885863 None:intergenic 65.0%
! GGTGTGGCACTGAGCGCACT+TGG - chr7_1:62885871-62885890 None:intergenic 65.0%
! CACACCGTCGACAAAGGCGC+CGG + chr7_1:62885885-62885904 Msa1029460:CDS 65.0%
AGATCTTCTCGCCGGCGGCG+GGG - chr7_1:62885842-62885861 None:intergenic 70.0%
CGGCGCCTTTGTCGACGGTG+TGG - chr7_1:62885887-62885906 None:intergenic 70.0%
GTGGCCGGCGCCTTTGTCGA+CGG - chr7_1:62885892-62885911 None:intergenic 70.0%
! CCTCCCGGAAACCCCGCCGC+CGG + chr7_1:62885828-62885847 Msa1029460:CDS 80.0%
! TCGCCGGCGGCGGGGTTTCC+GGG - chr7_1:62885834-62885853 None:intergenic 80.0%
! CTCGCCGGCGGCGGGGTTTC+CGG - chr7_1:62885835-62885854 None:intergenic 80.0%
! CCGGCGGCGGGGTTTCCGGG+AGG - chr7_1:62885831-62885850 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 62885420 62888283 62885420 ID=Msa1029460;Name=Msa1029460
chr7_1 mRNA 62885420 62888283 62885420 ID=Msa1029460-mRNA-1;Parent=Msa1029460;Name=Msa1029460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=387|1|1|1|1|1|3|455|113
chr7_1 exon 62885420 62885918 62885420 ID=Msa1029460-mRNA-1:exon:13525;Parent=Msa1029460-mRNA-1
chr7_1 exon 62887355 62887488 62887355 ID=Msa1029460-mRNA-1:exon:13526;Parent=Msa1029460-mRNA-1
chr7_1 exon 62887733 62888283 62887733 ID=Msa1029460-mRNA-1:exon:13527;Parent=Msa1029460-mRNA-1
chr7_1 five_prime_UTR 62885420 62885806 62885420 ID=Msa1029460-mRNA-1:five_prime_utr;Parent=Msa1029460-mRNA-1
chr7_1 CDS 62885807 62885918 62885807 ID=Msa1029460-mRNA-1:cds;Parent=Msa1029460-mRNA-1
chr7_1 CDS 62887355 62887488 62887355 ID=Msa1029460-mRNA-1:cds;Parent=Msa1029460-mRNA-1
chr7_1 CDS 62887733 62887828 62887733 ID=Msa1029460-mRNA-1:cds;Parent=Msa1029460-mRNA-1
chr7_1 three_prime_UTR 62887829 62888283 62887829 ID=Msa1029460-mRNA-1:three_prime_utr;Parent=Msa1029460-mRNA-1
Gene Sequence

>Msa1029460

ATGGCGTCCTTCGATGAAGCTCCTCCCGGAAACCCCGCCGCCGGCGAGAAGATCTTCAAAACCAAGTGCGCTCAGTGCCACACCGTCGACAAAGGCGCCGGCCACAAACAAGGACCCAATCTGAATGGTTTGTTTGGAAGGCAATCTGGGACAACTCCTGGATATTCCTACTCTGCAGCTAACAAGAACAAGGCTGTGGATTGGGAGGAAAAGACCTTGTACGATTACTTGCTGAACCCCAAGAAGTACATCCCAGGGACGAAGATGGTTTTTCCTGGTCTTAAGAAGCCTCAAGAACGTGCTGATCTTATTGCATATCTGAAAGATGCCACTTCAAAATAA
Protein sequence

>Msa1029460

MASFDEAPPGNPAAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNKAVDWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERADLIAYLKDATSK*