AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1004900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004900 MtrunA17_Chr7g0214981 95.479 376 10 2 1 375 1 370 0.0 706
Msa1004900 MtrunA17_Chr1g0209971 64.160 399 116 6 1 375 1 396 4.18e-166 470
Msa1004900 MtrunA17_Chr2g0334051 56.201 379 149 6 1 375 1 366 5.12e-131 380
Msa1004900 MtrunA17_Chr1g0146801 60.714 84 32 1 1 83 1 84 8.91e-26 100
Msa1004900 MtrunA17_Chr7g0226581 60.526 76 30 0 1 76 205 280 3.27e-24 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1004900 AT3G02540.3 59.770 435 98 9 1 375 1 418 7.31e-163 463
Msa1004900 AT3G02540.1 60.757 423 114 8 1 375 1 419 9.73e-163 462
Msa1004900 AT5G38470.1 67.277 382 113 7 1 375 1 377 3.39e-162 459
Msa1004900 AT1G79650.2 55.091 383 146 6 1 375 1 365 1.99e-132 384
Msa1004900 AT1G79650.1 53.213 389 150 7 1 375 1 371 9.66e-132 382
Msa1004900 AT1G79650.4 52.840 405 151 9 1 375 1 395 3.59e-129 376
Msa1004900 AT1G16190.1 52.618 382 160 6 1 375 1 368 5.73e-129 375
Msa1004900 AT5G38470.2 64.526 327 103 7 1 319 1 322 4.05e-124 361
Msa1004900 AT1G16190.2 52.101 357 150 6 26 375 3 345 6.13e-117 343
Msa1004900 AT1G79650.3 48.843 389 147 8 1 375 1 351 1.22e-113 335
Msa1004900 AT3G02540.2 54.785 303 91 5 1 261 1 299 9.09e-95 285
Msa1004900 AT5G16090.1 56.579 76 33 0 1 76 1 76 1.16e-21 91.3
Msa1004900 AT5G16090.1 45.833 96 52 0 274 369 74 169 3.24e-18 81.6

Find 128 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATGGCCTCGTTCTCTTC+TGG 0.133988 7_1:+2554357 None:intergenic
ACTAATCATCAAACTCATTT+TGG 0.167094 7_1:+2553913 None:intergenic
TAATCAGGGCATTCCCAATT+TGG 0.173680 7_1:-2555142 Msa1004900:intron
TGCTGGAGCTTCAGCTTGTT+CGG 0.253567 7_1:+2555361 None:intergenic
TTCTTTGCAGCCCATGCTTC+AGG 0.263564 7_1:-2554867 Msa1004900:intron
GAATGGCCTCGTTCTCTTCT+GGG 0.275717 7_1:+2554358 None:intergenic
TAGATATTCAACAGCTCTTT+CGG 0.288694 7_1:+2555912 None:intergenic
TGTTTGTGTCCTAAACTCTT+TGG 0.298373 7_1:-2553822 Msa1004900:three_prime_UTR
GCTGGAGCTTCAGCTTGTTC+GGG 0.312279 7_1:+2555362 None:intergenic
AGAGGGACAGTTGGGTGCTT+TGG 0.326637 7_1:-2554403 Msa1004900:CDS
AGATATTCAACAGCTCTTTC+GGG 0.333255 7_1:+2555913 None:intergenic
TATCCAACAAATTCTAGAAA+TGG 0.339571 7_1:-2555995 Msa1004900:CDS
TGGATGAGTTCCATTAGGTT+TGG 0.345262 7_1:+2554827 None:intergenic
AACCAGCTGTGCCTGCTGTT+GGG 0.345512 7_1:-2555280 Msa1004900:CDS
TCTAGAATTTGTTGGATAGT+TGG 0.348951 7_1:+2556000 None:intergenic
ATCCAACAAATTCTAGAAAT+GGG 0.348997 7_1:-2555994 Msa1004900:CDS
AAGTTCAGTGGGTTGGTGTT+AGG 0.351972 7_1:+2555257 None:intergenic
CAACCAGCTGTGCCTGCTGT+TGG 0.357460 7_1:-2555281 Msa1004900:CDS
AGGCAAAGAACTTGCAGGTT+GGG 0.363767 7_1:+2556459 None:intergenic
AATCAGGGCATTCCCAATTT+GGG 0.364424 7_1:-2555141 Msa1004900:intron
AACAGCAGGCACAGCTGGTT+GGG 0.370179 7_1:+2555283 None:intergenic
GCTCTTGGATGAGTTCCATT+AGG 0.373949 7_1:+2554822 None:intergenic
ATCACTTCTCCAAAGAGTTT+AGG 0.374572 7_1:+2553813 None:intergenic
TACAGGACCTTGCGCAAGAT+TGG 0.377380 7_1:+2556296 None:intergenic
AATAACTGTAAATAAATCTA+TGG 0.378769 7_1:+2553708 None:intergenic
TGGGCTGGAGGCTGAGCTGA+AGG 0.382041 7_1:+2555302 None:intergenic
TACGTAGTGGGAGGAGTTAC+AGG 0.385358 7_1:+2556279 None:intergenic
GCTGAATCTAATCTCATTGC+TGG 0.395901 7_1:-2556036 Msa1004900:CDS
GCAGGCACAGCTGGTTGGGC+TGG 0.396304 7_1:+2555287 None:intergenic
CAGCCCATGCTTCAGGAACT+AGG 0.397520 7_1:-2554860 Msa1004900:CDS
TGTCGTGATCATGTTGTCTA+AGG 0.399055 7_1:-2557398 Msa1004900:intron
AACCAAGCTGAGAAGATTGC+GGG 0.400142 7_1:-2553622 None:intergenic
TCATCAAGGAAAAGTGCTTA+AGG 0.402026 7_1:-2557464 Msa1004900:CDS
GCACCATTGTTCTCAAGGCT+TGG 0.405554 7_1:+2554980 None:intergenic
AAAACAAAATCCAAACCTAA+TGG 0.410836 7_1:-2554837 Msa1004900:CDS
GATTAACGTGAAGACTCTTA+AGG 0.418379 7_1:-2558576 Msa1004900:CDS
TGCTTGCACCATTGTTCTCA+AGG 0.420679 7_1:+2554975 None:intergenic
TCTGGCAGCCAACTACCTAT+TGG 0.424230 7_1:-2553940 Msa1004900:CDS
GGCACAGCTGGTTGGGCTGG+AGG 0.426558 7_1:+2555290 None:intergenic
CAATTCTAATTTCTAGTCAA+TGG 0.433095 7_1:+2553743 None:intergenic
GAAACTTCACAGCAGAACTT+TGG 0.435391 7_1:+2558691 None:intergenic
ATGGTGATTTACAGATACTT+TGG 0.436103 7_1:+2553762 None:intergenic
AGAAGTCAGCTTGATGCTCT+TGG 0.439778 7_1:+2554807 None:intergenic
AGCAAACCCTCAAATCTTGC+AGG 0.441602 7_1:-2554956 Msa1004900:intron
TTCTTCCTGCCCAACATTGG+TGG 0.442898 7_1:+2555328 None:intergenic
ACTAGAAATTAGAATTGTGT+TGG 0.448282 7_1:-2553737 Msa1004900:three_prime_UTR
GGCCCAACAGCAGGCACAGC+TGG 0.453907 7_1:+2555278 None:intergenic
CCGTATCTTGAGCGTTCACT+TGG 0.457398 7_1:+2558537 None:intergenic
ATTAACGTGAAGACTCTTAA+GGG 0.458211 7_1:-2558575 Msa1004900:CDS
ATGATACCTGCAAGATTTGA+GGG 0.458359 7_1:+2554950 None:intergenic
CTAGAAATTAGAATTGTGTT+GGG 0.462802 7_1:-2553736 Msa1004900:three_prime_UTR
GGGCTGGAGGCTGAGCTGAA+GGG 0.463910 7_1:+2555303 None:intergenic
TTGGTGATCCAATAGGTAGT+TGG 0.464218 7_1:+2553932 None:intergenic
ATAAGCATTTGTTGTGCAGC+AGG 0.465256 7_1:+2557487 None:intergenic
CACCGCGCACACGGTGGAGG+AGG 0.470373 7_1:+2558631 None:intergenic
GATGATACCTGCAAGATTTG+AGG 0.473748 7_1:+2554949 None:intergenic
TGCTGCTTCAGCTGCCCCAC+CGG 0.476716 7_1:-2556785 Msa1004900:intron
TTGGTGGATGCAGCAACTGC+TGG 0.482507 7_1:+2555344 None:intergenic
AACCCGCAATCTTCTCAGCT+TGG 0.482634 7_1:+2553620 None:intergenic
AGAGAACGAGGCCATTCAAC+GGG 0.484161 7_1:-2554352 Msa1004900:intron
TTTCCTAGTTCCTGAAGCAT+GGG 0.485024 7_1:+2554857 None:intergenic
TTGCTGCATCCACCAATGTT+GGG 0.488460 7_1:-2555337 Msa1004900:CDS
TAATCTTACTCTTCGCCTCC+AGG 0.493950 7_1:+2554767 None:intergenic
CAACAGCAGGCACAGCTGGT+TGG 0.493994 7_1:+2555282 None:intergenic
GAGGCAAAGAACTTGCAGGT+TGG 0.500324 7_1:+2556458 None:intergenic
GAGGCTGAGGTGTTGACGAA+GGG 0.503739 7_1:+2556434 None:intergenic
TTACGTCTTATAAATGAGCC+TGG 0.509014 7_1:-2554785 Msa1004900:CDS
TCAGCTTGGCCATATGTGTC+AGG 0.511064 7_1:+2556054 None:intergenic
TGCATCCACCAATGTTGGGC+AGG 0.512054 7_1:-2555333 Msa1004900:CDS
CCCCTCCTCCACCGTGTGCG+CGG 0.514081 7_1:-2558633 Msa1004900:five_prime_UTR
GTTGCTGCATCCACCAATGT+TGG 0.517414 7_1:-2555338 Msa1004900:CDS
CCCACTGAACTTGTTCCCTC+AGG 0.518809 7_1:-2555246 Msa1004900:intron
ATTTCTGCGAAACAGTCAAC+AGG 0.524257 7_1:-2555091 Msa1004900:intron
ACAGTTGATGCAGGAGGCTG+AGG 0.524763 7_1:+2556421 None:intergenic
CTCTTCTGGGGTGATAGTAA+TGG 0.530516 7_1:+2554371 None:intergenic
CAACAAATGCTTATTCATCA+AGG 0.532343 7_1:-2557478 Msa1004900:CDS
TCACTAGCTTACCCGTTGAA+TGG 0.535651 7_1:+2554341 None:intergenic
AGGAACCTAGAGGGACAGTT+GGG 0.536808 7_1:-2554411 Msa1004900:CDS
ATGTCAGATGCTTACGTAGT+GGG 0.537334 7_1:+2556267 None:intergenic
TACTGTCCGACAGTTGATGC+AGG 0.540212 7_1:+2556412 None:intergenic
CGACCGAGATCTTGTGTTGG+AGG 0.543876 7_1:-2553991 Msa1004900:CDS
AATGGCCTCGTTCTCTTCTG+GGG 0.544654 7_1:+2554359 None:intergenic
CCAAGTGAACGCTCAAGATA+CGG 0.549415 7_1:-2558537 Msa1004900:intron
AAATGAAAATGCAGGTGACT+TGG 0.550169 7_1:-2555115 Msa1004900:CDS
ACCGCGCACACGGTGGAGGA+GGG 0.551093 7_1:+2558632 None:intergenic
GGAGGCTGAGGTGTTGACGA+AGG 0.552268 7_1:+2556433 None:intergenic
CAATGAGATTAGATTCAGCT+TGG 0.553063 7_1:+2556040 None:intergenic
CAGGAACCTAGAGGGACAGT+TGG 0.559902 7_1:-2554412 Msa1004900:CDS
TGGGGCAGCTGAAGCAGCAG+AGG 0.565661 7_1:+2556789 None:intergenic
AAGCACCCAACTGTCCCTCT+AGG 0.566429 7_1:+2554406 None:intergenic
TCCAACAAATTCTAGAAATG+GGG 0.567601 7_1:-2555993 Msa1004900:CDS
GCTTAAGGATGAGACTACCT+TGG 0.575347 7_1:-2557449 Msa1004900:CDS
TTGGTGTTAGGCCCAACAGC+AGG 0.576242 7_1:+2555269 None:intergenic
AGGGAACAAGTTCAGTGGGT+TGG 0.582012 7_1:+2555250 None:intergenic
TTTGGCAGCTTGAGGATATG+GGG 0.582461 7_1:-2554016 Msa1004900:intron
CAGAATAAGGTATCATCAAG+TGG 0.584643 7_1:-2556814 Msa1004900:CDS
CCGCGCACACGGTGGAGGAG+GGG 0.598059 7_1:+2558633 None:intergenic
TATATGCAGCACGAAGAGCT+CGG 0.599886 7_1:+2555941 None:intergenic
TAAGCATTTGTTGTGCAGCA+GGG 0.603329 7_1:+2557488 None:intergenic
CCAACAAATTCTAGAAATGG+GGG 0.603400 7_1:-2555992 Msa1004900:CDS
CTGGAGCTTCAGCTTGTTCG+GGG 0.603945 7_1:+2555363 None:intergenic
GGCTGAGGTGTTGACGAAGG+GGG 0.612458 7_1:+2556436 None:intergenic
CAGCCTCCTGCATCAACTGT+CGG 0.612796 7_1:-2556418 Msa1004900:CDS
AGGCTGAGGTGTTGACGAAG+GGG 0.612893 7_1:+2556435 None:intergenic
GAATTGTATATTTCAGTGCG+TGG 0.614207 7_1:-2553682 Msa1004900:three_prime_UTR
ACACCTCCAACACAAGATCT+CGG 0.615119 7_1:+2553988 None:intergenic
AGTGTGGTGCCTGACACATA+TGG 0.615190 7_1:-2556063 Msa1004900:CDS
AAGAGAACGAGGCCATTCAA+CGG 0.619236 7_1:-2554353 Msa1004900:CDS
GTTCGACCGAGATCTTGTGT+TGG 0.621206 7_1:-2553994 Msa1004900:CDS
AGAAATCACCACCGCGCACA+CGG 0.622074 7_1:+2558622 None:intergenic
GGAGAATCCAATCTTGCGCA+AGG 0.625254 7_1:-2556303 Msa1004900:CDS
ACCTGAGGGAACAAGTTCAG+TGG 0.626835 7_1:+2555245 None:intergenic
CCTGAGGGAACAAGTTCAGT+GGG 0.627488 7_1:+2555246 None:intergenic
CTCCTCCACCGTGTGCGCGG+TGG 0.629121 7_1:-2558630 Msa1004900:five_prime_UTR
TAACCAAGCTGAGAAGATTG+CGG 0.629188 7_1:-2553623 Msa1004900:three_prime_UTR
TTGGGTGCAAATGAAAATGC+AGG 0.634420 7_1:-2555123 Msa1004900:CDS
AAAATTTGTACTTACCGGTG+GGG 0.638126 7_1:+2556771 None:intergenic
GTTCCAAGCCTTGAGAACAA+TGG 0.641500 7_1:-2554983 Msa1004900:CDS
TGTATGACCAGGAACCTAGA+GGG 0.644106 7_1:-2554420 Msa1004900:intron
GCGCGGTGGTGATTTCTGAT+CGG 0.654664 7_1:-2558616 Msa1004900:five_prime_UTR
TCAGATGCTTACGTAGTGGG+AGG 0.672680 7_1:+2556270 None:intergenic
GGGGTGATAGTAATGGTCTG+AGG 0.673723 7_1:+2554378 None:intergenic
CAACAAATTCTAGAAATGGG+GGG 0.675087 7_1:-2555991 Msa1004900:CDS
TGTCCGACAGTTGATGCAGG+AGG 0.687879 7_1:+2556415 None:intergenic
AATCACCACCGCGCACACGG+TGG 0.697495 7_1:+2558625 None:intergenic
TTGTATGACCAGGAACCTAG+AGG 0.704847 7_1:-2554421 Msa1004900:intron
CGTCTTATAAATGAGCCTGG+AGG 0.725357 7_1:-2554782 Msa1004900:CDS
TATCACCCCAGAAGAGAACG+AGG 0.729383 7_1:-2554364 Msa1004900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATAATTCAATTTTTTTTT+AGG - chr7_1:2553832-2553851 Msa1004900:three_prime_UTR 10.0%
!! CAATAAAATTTAAACAATAA+TGG - chr7_1:2557130-2557149 Msa1004900:intron 10.0%
!!! TTTTTTTGTTTTTTTTAATC+AGG - chr7_1:2557167-2557186 Msa1004900:intron 10.0%
!!! TTTTTTGTTTTTTTTAATCA+GGG - chr7_1:2557168-2557187 Msa1004900:intron 10.0%
!! ATAAATAATGAAAACTAATA+TGG + chr7_1:2557294-2557313 None:intergenic 10.0%
!!! ATAGGTTGAATTTTTTTTTT+TGG - chr7_1:2554166-2554185 Msa1004900:intron 15.0%
!! GAAAACATAAATTGAATTAA+AGG + chr7_1:2555092-2555111 None:intergenic 15.0%
!!! ATTGTATTATCTTTTAAGAT+CGG + chr7_1:2556680-2556699 None:intergenic 15.0%
!! AAAGATAATACAATGAATAA+CGG - chr7_1:2556686-2556705 Msa1004900:intron 15.0%
!!! ATTTGAATAACTATATCTTT+TGG + chr7_1:2557667-2557686 None:intergenic 15.0%
!! AATAAACCATATATTAATCT+AGG - chr7_1:2557823-2557842 Msa1004900:intron 15.0%
!! ATAAACCATATATTAATCTA+GGG - chr7_1:2557824-2557843 Msa1004900:intron 15.0%
!!! TTATTACTTTTTGTTGTTTT+CGG - chr7_1:2558536-2558555 Msa1004900:intron 15.0%
!! AATAACTGTAAATAAATCTA+TGG + chr7_1:2558619-2558638 None:intergenic 15.0%
!!! CTTAATATTTTTTTATTTCG+TGG - chr7_1:2558671-2558690 Msa1004900:five_prime_UTR 15.0%
!! TTGGTTGAAATAAATTGTTT+CGG - chr7_1:2553911-2553930 Msa1004900:exon 20.0%
!!! TTTGAATGTTAAGTTGTTTA+TGG - chr7_1:2554424-2554443 Msa1004900:intron 20.0%
!!! GATGATGTTATTTTAATGAT+TGG - chr7_1:2554965-2554984 Msa1004900:CDS 20.0%
!!! AGTATTTAAGTTAATTCAGT+TGG - chr7_1:2555024-2555043 Msa1004900:intron 20.0%
!!! GTATTTAAGTTAATTCAGTT+GGG - chr7_1:2555025-2555044 Msa1004900:intron 20.0%
!!! TATTTAAGTTAATTCAGTTG+GGG - chr7_1:2555026-2555045 Msa1004900:intron 20.0%
!!! TTTTTGATGTTTAAATGTGT+GGG - chr7_1:2555283-2555302 Msa1004900:CDS 20.0%
!!! AATTTTTGACAAAGATTGTA+AGG + chr7_1:2555594-2555613 None:intergenic 20.0%
!! AAAATAGTGAAATTTCACAA+TGG + chr7_1:2555802-2555821 None:intergenic 20.0%
!! AAAATATGAACTATATGATG+TGG + chr7_1:2556783-2556802 None:intergenic 20.0%
!!! TATAGTTCATATTTTATCAC+AGG - chr7_1:2556788-2556807 Msa1004900:CDS 20.0%
!! ACACACAAATTATTATATTC+AGG + chr7_1:2556818-2556837 None:intergenic 20.0%
!!! TTATGGTTTTGTATTAAGAA+TGG - chr7_1:2556852-2556871 Msa1004900:intron 20.0%
!! CATGTATAATTTAACTGATA+GGG - chr7_1:2556935-2556954 Msa1004900:intron 20.0%
!!! TTGTTTAAATTTTATTGCAC+AGG + chr7_1:2557127-2557146 None:intergenic 20.0%
!!! TTTAATTGTGTTTTCTACAA+AGG - chr7_1:2557259-2557278 Msa1004900:intron 20.0%
!!! AAGAGTAAGATTACTATTTT+AGG - chr7_1:2557567-2557586 Msa1004900:intron 20.0%
!!! AAGATGGTTAGAAAATATTT+TGG - chr7_1:2557847-2557866 Msa1004900:intron 20.0%
!!! AAAATTCTAGATTTTAACAC+TGG - chr7_1:2558435-2558454 Msa1004900:intron 20.0%
!!! TATTACTTTTTGTTGTTTTC+GGG - chr7_1:2558537-2558556 Msa1004900:intron 20.0%
! TAATTATTGGGTTATGTTGT+TGG - chr7_1:2553877-2553896 Msa1004900:three_prime_UTR 25.0%
! GTTGTTGGTATAAAAAAAGT+TGG - chr7_1:2553892-2553911 Msa1004900:three_prime_UTR 25.0%
!! AATGTTAAGTTGTTTATGGT+TGG - chr7_1:2554428-2554447 Msa1004900:intron 25.0%
! CTTCAAATTTGAATCAATTC+TGG - chr7_1:2554511-2554530 Msa1004900:intron 25.0%
!!! TTGAGAAGTTTAAGTTTTTG+TGG - chr7_1:2554725-2554744 Msa1004900:intron 25.0%
!! TATGTATGTTTGTTTCTTGA+TGG - chr7_1:2554756-2554775 Msa1004900:intron 25.0%
!! TTTGTTTCTTGATGGATATT+AGG - chr7_1:2554764-2554783 Msa1004900:intron 25.0%
! GATGTGAAGAAAAATATAGA+GGG - chr7_1:2554792-2554811 Msa1004900:CDS 25.0%
!! AACTGCATATTTGAAATTGA+TGG + chr7_1:2555124-2555143 None:intergenic 25.0%
! AAATATGCAGTTACAAAAGT+GGG - chr7_1:2555132-2555151 Msa1004900:CDS 25.0%
!! TGTGGATTTTTATTGGATAT+TGG - chr7_1:2555170-2555189 Msa1004900:intron 25.0%
!! GTTTTTGATGTTTAAATGTG+TGG - chr7_1:2555282-2555301 Msa1004900:CDS 25.0%
!!! AACCTTCCTTCATTATTTTT+TGG - chr7_1:2555343-2555362 Msa1004900:CDS 25.0%
!!! ACCTTCCTTCATTATTTTTT+GGG - chr7_1:2555344-2555363 Msa1004900:CDS 25.0%
!! TTCTATTGCTTCCTTTTAAT+GGG - chr7_1:2555392-2555411 Msa1004900:intron 25.0%
! ACAAGAAAATTTGTACTTAC+CGG + chr7_1:2555561-2555580 None:intergenic 25.0%
! CCTAAATAATCATGCAAAAT+TGG + chr7_1:2555755-2555774 None:intergenic 25.0%
!! CCAATTTTGCATGATTATTT+AGG - chr7_1:2555752-2555771 Msa1004900:intron 25.0%
!!! TAAGTTCACATTTGTTTCTA+TGG - chr7_1:2555933-2555952 Msa1004900:CDS 25.0%
! TTAAATTCATCTCACTTTCA+GGG - chr7_1:2555999-2556018 Msa1004900:CDS 25.0%
!! TATCCAACAAATTCTAGAAA+TGG - chr7_1:2556329-2556348 Msa1004900:intron 25.0%
!! ATCCAACAAATTCTAGAAAT+GGG - chr7_1:2556330-2556349 Msa1004900:intron 25.0%
! AATATTTGAGTGTCAAACAA+TGG - chr7_1:2556728-2556747 Msa1004900:intron 25.0%
! CCTATCAGTTAAATTATACA+TGG + chr7_1:2556937-2556956 None:intergenic 25.0%
! CCATGTATAATTTAACTGAT+AGG - chr7_1:2556934-2556953 Msa1004900:intron 25.0%
!! CTCCATTACTATAATTTTCT+AGG - chr7_1:2557413-2557432 Msa1004900:CDS 25.0%
! GTCCTAGAAAATTATAGTAA+TGG + chr7_1:2557418-2557437 None:intergenic 25.0%
! AAAACAAAATCCAAACCTAA+TGG - chr7_1:2557487-2557506 Msa1004900:CDS 25.0%
!! ACTATATCTTTTGGTGAAAA+TGG + chr7_1:2557658-2557677 None:intergenic 25.0%
! TATCCTTTGTATTATAACCA+AGG + chr7_1:2557801-2557820 None:intergenic 25.0%
! ATCTTCCCTAGATTAATATA+TGG + chr7_1:2557832-2557851 None:intergenic 25.0%
! ATATATTAATCTAGGGAAGA+TGG - chr7_1:2557831-2557850 Msa1004900:intron 25.0%
! TTATTACATTATTGTGCAAG+AGG + chr7_1:2558270-2558289 None:intergenic 25.0%
!! ACTAATCATCAAACTCATTT+TGG + chr7_1:2558414-2558433 None:intergenic 25.0%
!!! CAATTCTAATTTCTAGTCAA+TGG + chr7_1:2558584-2558603 None:intergenic 25.0%
! ACTAGAAATTAGAATTGTGT+TGG - chr7_1:2558587-2558606 Msa1004900:exon 25.0%
! CTAGAAATTAGAATTGTGTT+GGG - chr7_1:2558588-2558607 Msa1004900:exon 25.0%
ATTAACGTGAAGACTCTTAA+GGG - chr7_1:2553749-2553768 Msa1004900:three_prime_UTR 30.0%
TTGAATGTAGTTACATGTGT+CGG - chr7_1:2554010-2554029 Msa1004900:CDS 30.0%
GTTCTTTAAACTAAACTGGA+AGG + chr7_1:2554118-2554137 None:intergenic 30.0%
GTCAGTTCTTTAAACTAAAC+TGG + chr7_1:2554122-2554141 None:intergenic 30.0%
! TGCAATATTAGTGCATGTTT+TGG - chr7_1:2554361-2554380 Msa1004900:CDS 30.0%
CAAATTTGAATCAATTCTGG+AGG - chr7_1:2554514-2554533 Msa1004900:intron 30.0%
! TTTCTTGATGGATATTAGGT+TGG - chr7_1:2554768-2554787 Msa1004900:intron 30.0%
CGATGTGAAGAAAAATATAG+AGG - chr7_1:2554791-2554810 Msa1004900:CDS 30.0%
CAACAAATGCTTATTCATCA+AGG - chr7_1:2554846-2554865 Msa1004900:CDS 30.0%
CAAATATGCAGTTACAAAAG+TGG - chr7_1:2555131-2555150 Msa1004900:CDS 30.0%
AATATGCAGTTACAAAAGTG+GGG - chr7_1:2555133-2555152 Msa1004900:CDS 30.0%
! GCAGAATTGTGGATTTTTAT+TGG - chr7_1:2555163-2555182 Msa1004900:intron 30.0%
AGGAAGGTTAAAAGACATAA+AGG + chr7_1:2555332-2555351 None:intergenic 30.0%
ACCCAAAAAATAATGAAGGA+AGG + chr7_1:2555348-2555367 None:intergenic 30.0%
TAGCACCCAAAAAATAATGA+AGG + chr7_1:2555352-2555371 None:intergenic 30.0%
! CTTCTATTGCTTCCTTTTAA+TGG - chr7_1:2555391-2555410 Msa1004900:intron 30.0%
! TCTATTGCTTCCTTTTAATG+GGG - chr7_1:2555393-2555412 Msa1004900:intron 30.0%
! TTTTCTTGTTCCCCATTAAA+AGG + chr7_1:2555406-2555425 None:intergenic 30.0%
TGGACAGAATATTACAACTT+AGG + chr7_1:2555451-2555470 None:intergenic 30.0%
AGTTGTAATATTCTGTCCAT+TGG - chr7_1:2555452-2555471 Msa1004900:intron 30.0%
AAAGTTTAGAAGTGAACCAA+TGG + chr7_1:2555471-2555490 None:intergenic 30.0%
ATGATACCTTATTCTGCAAA+GGG + chr7_1:2555506-2555525 None:intergenic 30.0%
CAAAATTGGATATTGTGAAG+AGG + chr7_1:2555741-2555760 None:intergenic 30.0%
TGCTCGCTATTTATATATGT+AGG - chr7_1:2555839-2555858 Msa1004900:intron 30.0%
GTTAAATTCATCTCACTTTC+AGG - chr7_1:2555998-2556017 Msa1004900:CDS 30.0%
TAAATTCATCTCACTTTCAG+GGG - chr7_1:2556000-2556019 Msa1004900:CDS 30.0%
ACATAAATATGCATCAGTTG+TGG - chr7_1:2556106-2556125 Msa1004900:intron 30.0%
ATAAGACACTATCTACACAA+GGG + chr7_1:2556134-2556153 None:intergenic 30.0%
AATAAGACACTATCTACACA+AGG + chr7_1:2556135-2556154 None:intergenic 30.0%
ATGCCTAAGAATAAGAGAAT+AGG + chr7_1:2556168-2556187 None:intergenic 30.0%
!! TCTAGAATTTGTTGGATAGT+TGG + chr7_1:2556327-2556346 None:intergenic 30.0%
! TCCAACAAATTCTAGAAATG+GGG - chr7_1:2556331-2556350 Msa1004900:intron 30.0%
TAGATATTCAACAGCTCTTT+CGG + chr7_1:2556415-2556434 None:intergenic 30.0%
!!! GGGTGTTTTTGCTATTAATT+TGG - chr7_1:2556492-2556511 Msa1004900:intron 30.0%
GCAAATCATTAAAACTGTAC+TGG + chr7_1:2556643-2556662 None:intergenic 30.0%
AATACAATGAATAACGGTGA+AGG - chr7_1:2556692-2556711 Msa1004900:intron 30.0%
! GTTCATATTTTATCACAGGA+TGG - chr7_1:2556792-2556811 Msa1004900:CDS 30.0%
! TTTTCATTTGCACCCAAATT+GGG + chr7_1:2557198-2557217 None:intergenic 30.0%
! ATTTTCATTTGCACCCAAAT+TGG + chr7_1:2557199-2557218 None:intergenic 30.0%
!!! GAAAATGGTTTTAGTCAAGT+TGG + chr7_1:2557643-2557662 None:intergenic 30.0%
GAGCAAACAAATGTCTTAAT+AGG + chr7_1:2557873-2557892 None:intergenic 30.0%
! ACTTTTGTATTTGTATGACC+AGG - chr7_1:2557893-2557912 Msa1004900:intron 30.0%
TCACAATTAAAACAGCTGAA+TGG + chr7_1:2558018-2558037 None:intergenic 30.0%
ATGGTGATTTACAGATACTT+TGG + chr7_1:2558565-2558584 None:intergenic 30.0%
GATTAACGTGAAGACTCTTA+AGG - chr7_1:2553748-2553767 Msa1004900:three_prime_UTR 35.0%
ACCAGATACGATACTAAGAT+AGG - chr7_1:2554148-2554167 Msa1004900:intron 35.0%
ACCTATCTTAGTATCGTATC+TGG + chr7_1:2554152-2554171 None:intergenic 35.0%
! TGCATGTCTAGAATCAATTC+TGG - chr7_1:2554584-2554603 Msa1004900:intron 35.0%
AGTATGACTAAGCCTGTATT+TGG + chr7_1:2554627-2554646 None:intergenic 35.0%
! AAAAATATAGAGGGAGCACA+GGG - chr7_1:2554801-2554820 Msa1004900:CDS 35.0%
!! TCATCAAGGAAAAGTGCTTA+AGG - chr7_1:2554860-2554879 Msa1004900:CDS 35.0%
! AGCAACTTGATTTTCTTCCA+AGG + chr7_1:2554895-2554914 None:intergenic 35.0%
AAACACAATAGACACGACAA+AGG + chr7_1:2555227-2555246 None:intergenic 35.0%
GTTAGTAAGACATTAACAGC+AGG - chr7_1:2555305-2555324 Msa1004900:CDS 35.0%
TGGGGAACAAGAAAAATCAT+TGG - chr7_1:2555411-2555430 Msa1004900:intron 35.0%
GATGATACCTTATTCTGCAA+AGG + chr7_1:2555507-2555526 None:intergenic 35.0%
! CAGAATAAGGTATCATCAAG+TGG - chr7_1:2555510-2555529 Msa1004900:intron 35.0%
AAAATTTGTACTTACCGGTG+GGG + chr7_1:2555556-2555575 None:intergenic 35.0%
GAAAATTTGTACTTACCGGT+GGG + chr7_1:2555557-2555576 None:intergenic 35.0%
AGAAAATTTGTACTTACCGG+TGG + chr7_1:2555558-2555577 None:intergenic 35.0%
CCTAAGAATAAGAGAATAGG+CGG + chr7_1:2556165-2556184 None:intergenic 35.0%
ATACGTTGTTTATTGCAGTG+TGG - chr7_1:2556245-2556264 Msa1004900:intron 35.0%
CAATGAGATTAGATTCAGCT+TGG + chr7_1:2556287-2556306 None:intergenic 35.0%
! CCAACAAATTCTAGAAATGG+GGG - chr7_1:2556332-2556351 Msa1004900:intron 35.0%
! CAACAAATTCTAGAAATGGG+GGG - chr7_1:2556333-2556352 Msa1004900:intron 35.0%
AGATATTCAACAGCTCTTTC+GGG + chr7_1:2556414-2556433 None:intergenic 35.0%
ATGGGAAAGCTAGATTATGT+GGG + chr7_1:2556456-2556475 None:intergenic 35.0%
TACTACAAGCATAAGTTGTG+CGG + chr7_1:2556605-2556624 None:intergenic 35.0%
AAATGAAAATGCAGGTGACT+TGG - chr7_1:2557209-2557228 Msa1004900:intron 35.0%
ATGATACCTGCAAGATTTGA+GGG + chr7_1:2557377-2557396 None:intergenic 35.0%
TTACGTCTTATAAATGAGCC+TGG - chr7_1:2557539-2557558 Msa1004900:CDS 35.0%
! TAGGGTCATCATTTTATCAC+TGG - chr7_1:2557774-2557793 Msa1004900:intron 35.0%
! ATCATTTTATCACTGGACCT+TGG - chr7_1:2557781-2557800 Msa1004900:intron 35.0%
GGACCTTGGTTATAATACAA+AGG - chr7_1:2557795-2557814 Msa1004900:intron 35.0%
TCTATGTATTTGCTTGTCCA+TGG - chr7_1:2558053-2558072 Msa1004900:intron 35.0%
CAACATTACTAAACATGCCA+TGG + chr7_1:2558073-2558092 None:intergenic 35.0%
! AGAGTGCAAAACCAGTATTT+TGG + chr7_1:2558149-2558168 None:intergenic 35.0%
ATTCTTCATGCATCTTTCTC+AGG - chr7_1:2558190-2558209 Msa1004900:intron 35.0%
! CATAACTGACCATGACATTT+TGG - chr7_1:2558290-2558309 Msa1004900:intron 35.0%
!! ACTCATTTTGGTGATCCAAT+AGG + chr7_1:2558402-2558421 None:intergenic 35.0%
TGTTTGTGTCCTAAACTCTT+TGG - chr7_1:2558502-2558521 Msa1004900:intron 35.0%
ATCACTTCTCCAAAGAGTTT+AGG + chr7_1:2558514-2558533 None:intergenic 35.0%
GAATTGTATATTTCAGTGCG+TGG - chr7_1:2558642-2558661 Msa1004900:five_prime_UTR 35.0%
GAAACTTCACAGCAGAACTT+TGG + chr7_1:2553636-2553655 None:intergenic 40.0%
GAGATATCCACGTCTATTGT+CGG - chr7_1:2554087-2554106 Msa1004900:intron 40.0%
TTCGATACATGTCAGTGTCT+GGG + chr7_1:2554251-2554270 None:intergenic 40.0%
ACACTGACATGTATCGAACA+CGG - chr7_1:2554253-2554272 Msa1004900:intron 40.0%
! GAACACGGGATTTAAAGTGT+TGG - chr7_1:2554268-2554287 Msa1004900:intron 40.0%
!! AGTGTTGGTACTTTCTGACT+AGG - chr7_1:2554283-2554302 Msa1004900:intron 40.0%
! GTGTTGGTACTTTCTGACTA+GGG - chr7_1:2554284-2554303 Msa1004900:intron 40.0%
TGTTGGTACTTTCTGACTAG+GGG - chr7_1:2554285-2554304 Msa1004900:intron 40.0%
! AATTCTGGCTACTCCAAACA+AGG - chr7_1:2554599-2554618 Msa1004900:intron 40.0%
! GAAAAATATAGAGGGAGCAC+AGG - chr7_1:2554800-2554819 Msa1004900:CDS 40.0%
!! TAAGCATTTGTTGTGCAGCA+GGG + chr7_1:2554839-2554858 None:intergenic 40.0%
!! ATAAGCATTTGTTGTGCAGC+AGG + chr7_1:2554840-2554859 None:intergenic 40.0%
TGTCGTGATCATGTTGTCTA+AGG - chr7_1:2554926-2554945 Msa1004900:intron 40.0%
GTTACAAAAGTGGGGTGATA+TGG - chr7_1:2555141-2555160 Msa1004900:intron 40.0%
GATCTTCCCTTTGCAGAATA+AGG - chr7_1:2555497-2555516 Msa1004900:intron 40.0%
!!! GTTTTTAGTGACTGTGAAGC+TGG - chr7_1:2555661-2555680 Msa1004900:intron 40.0%
GGATGGGTAATGCAATGATT+TGG - chr7_1:2555682-2555701 Msa1004900:intron 40.0%
ATGTCAGATGCTTACGTAGT+GGG + chr7_1:2556060-2556079 None:intergenic 40.0%
TATGTCAGATGCTTACGTAG+TGG + chr7_1:2556061-2556080 None:intergenic 40.0%
CCGCCTATTCTCTTATTCTT+AGG - chr7_1:2556162-2556181 Msa1004900:intron 40.0%
GCTGAATCTAATCTCATTGC+TGG - chr7_1:2556288-2556307 Msa1004900:CDS 40.0%
!! CCCCCATTTCTAGAATTTGT+TGG + chr7_1:2556335-2556354 None:intergenic 40.0%
CATGGGAAAGCTAGATTATG+TGG + chr7_1:2556457-2556476 None:intergenic 40.0%
CCATACTCGATACTTCACAT+GGG + chr7_1:2556474-2556493 None:intergenic 40.0%
!! CCATGTGAAGTATCGAGTAT+GGG - chr7_1:2556472-2556491 Msa1004900:intron 40.0%
ACTACAAGCATAAGTTGTGC+GGG + chr7_1:2556604-2556623 None:intergenic 40.0%
TTTGTGTGTTTGCAGCAAAG+TGG - chr7_1:2556829-2556848 Msa1004900:intron 40.0%
TGTTTGCAGCAAAGTGGTTA+TGG - chr7_1:2556835-2556854 Msa1004900:intron 40.0%
! TAATCAGGGCATTCCCAATT+TGG - chr7_1:2557182-2557201 Msa1004900:intron 40.0%
! AATCAGGGCATTCCCAATTT+GGG - chr7_1:2557183-2557202 Msa1004900:intron 40.0%
TTGGGTGCAAATGAAAATGC+AGG - chr7_1:2557201-2557220 Msa1004900:intron 40.0%
ATTTCTGCGAAACAGTCAAC+AGG - chr7_1:2557233-2557252 Msa1004900:intron 40.0%
GATGATACCTGCAAGATTTG+AGG + chr7_1:2557378-2557397 None:intergenic 40.0%
TTTCCTAGTTCCTGAAGCAT+GGG + chr7_1:2557470-2557489 None:intergenic 40.0%
! TTTTCCTAGTTCCTGAAGCA+TGG + chr7_1:2557471-2557490 None:intergenic 40.0%
TGGATGAGTTCCATTAGGTT+TGG + chr7_1:2557500-2557519 None:intergenic 40.0%
TACACAGATGACGAGCTTAA+TGG - chr7_1:2557690-2557709 Msa1004900:intron 40.0%
GTAGAGCTCAACCAAAATAC+TGG - chr7_1:2558135-2558154 Msa1004900:intron 40.0%
!! ATTTTGGCAGCTTGAGGATA+TGG - chr7_1:2558306-2558325 Msa1004900:intron 40.0%
! TTTTGGCAGCTTGAGGATAT+GGG - chr7_1:2558307-2558326 Msa1004900:intron 40.0%
CTTTGCGTGCAATAAAAACG+AGG - chr7_1:2558360-2558379 Msa1004900:intron 40.0%
GTGCAATAAAAACGAGGATC+TGG - chr7_1:2558366-2558385 Msa1004900:intron 40.0%
! TTGGTGATCCAATAGGTAGT+TGG + chr7_1:2558395-2558414 None:intergenic 40.0%
! AGGGGTTTTTGCTTCGGTTT+GGG + chr7_1:2553676-2553695 None:intergenic 45.0%
CCAAGTGAACGCTCAAGATA+CGG - chr7_1:2553787-2553806 Msa1004900:three_prime_UTR 45.0%
! GTAGTTACATGTGTCGGTGT+CGG - chr7_1:2554016-2554035 Msa1004900:intron 45.0%
AAGTGTCAGTGCTTTAGTGC+TGG - chr7_1:2554062-2554081 Msa1004900:intron 45.0%
AGTGTCAGTGCTTTAGTGCT+GGG - chr7_1:2554063-2554082 Msa1004900:intron 45.0%
GTTCGATACATGTCAGTGTC+TGG + chr7_1:2554252-2554271 None:intergenic 45.0%
CACTGACATGTATCGAACAC+GGG - chr7_1:2554254-2554273 Msa1004900:intron 45.0%
! CCTGTATTTGGCTCCTTGTT+TGG + chr7_1:2554615-2554634 None:intergenic 45.0%
CCAAACAAGGAGCCAAATAC+AGG - chr7_1:2554612-2554631 Msa1004900:intron 45.0%
GCTTAAGGATGAGACTACCT+TGG - chr7_1:2554875-2554894 Msa1004900:intron 45.0%
GTTGGGGAAGCTAGAAAACA+AGG - chr7_1:2555042-2555061 Msa1004900:intron 45.0%
TTAGTGACTGTGAAGCTGGA+TGG - chr7_1:2555665-2555684 Msa1004900:intron 45.0%
TAGTGACTGTGAAGCTGGAT+GGG - chr7_1:2555666-2555685 Msa1004900:intron 45.0%
AGGCAAAGAACTTGCAGGTT+GGG + chr7_1:2555868-2555887 None:intergenic 45.0%
! CAAATTCTAGAAATGGGGGG+AGG - chr7_1:2556336-2556355 Msa1004900:intron 45.0%
TATATGCAGCACGAAGAGCT+CGG + chr7_1:2556386-2556405 None:intergenic 45.0%
!! CCCATGTGAAGTATCGAGTA+TGG - chr7_1:2556471-2556490 Msa1004900:intron 45.0%
CCCATACTCGATACTTCACA+TGG + chr7_1:2556475-2556494 None:intergenic 45.0%
CAATGAATAACGGTGAAGGC+AGG - chr7_1:2556696-2556715 Msa1004900:intron 45.0%
TTGCTGCATCCACCAATGTT+GGG - chr7_1:2556987-2557006 Msa1004900:intron 45.0%
! GTTTTCTTCCTGCCCAACAT+TGG + chr7_1:2557002-2557021 None:intergenic 45.0%
!! AAGTTCAGTGGGTTGGTGTT+AGG + chr7_1:2557070-2557089 None:intergenic 45.0%
AGTTCACAGTACACACCTGA+GGG + chr7_1:2557096-2557115 None:intergenic 45.0%
GTTCCAAGCCTTGAGAACAA+TGG - chr7_1:2557341-2557360 Msa1004900:intron 45.0%
TGCTTGCACCATTGTTCTCA+AGG + chr7_1:2557352-2557371 None:intergenic 45.0%
AGCAAACCCTCAAATCTTGC+AGG - chr7_1:2557368-2557387 Msa1004900:intron 45.0%
GCTCTTGGATGAGTTCCATT+AGG + chr7_1:2557505-2557524 None:intergenic 45.0%
AGAAGTCAGCTTGATGCTCT+TGG + chr7_1:2557520-2557539 None:intergenic 45.0%
CGTCTTATAAATGAGCCTGG+AGG - chr7_1:2557542-2557561 Msa1004900:intron 45.0%
TAATCTTACTCTTCGCCTCC+AGG + chr7_1:2557560-2557579 None:intergenic 45.0%
ACACCACAAGCAGATGCATA+GGG - chr7_1:2557756-2557775 Msa1004900:intron 45.0%
TTGTATGACCAGGAACCTAG+AGG - chr7_1:2557903-2557922 Msa1004900:intron 45.0%
TGTATGACCAGGAACCTAGA+GGG - chr7_1:2557904-2557923 Msa1004900:intron 45.0%
!! CTCTTCTGGGGTGATAGTAA+TGG + chr7_1:2557956-2557975 None:intergenic 45.0%
AAGAGAACGAGGCCATTCAA+CGG - chr7_1:2557971-2557990 Msa1004900:intron 45.0%
! TCACTAGCTTACCCGTTGAA+TGG + chr7_1:2557986-2558005 None:intergenic 45.0%
CTCAAGCTGCCAAAATGTCA+TGG + chr7_1:2558302-2558321 None:intergenic 45.0%
!! CATGACATTTTGGCAGCTTG+AGG - chr7_1:2558300-2558319 Msa1004900:intron 45.0%
TTTGGCAGCTTGAGGATATG+GGG - chr7_1:2558308-2558327 Msa1004900:intron 45.0%
ACACCTCCAACACAAGATCT+CGG + chr7_1:2558339-2558358 None:intergenic 45.0%
!!! TTTCTTTTAATTTTAATTAT+TGG - chr7_1:2553864-2553883 Msa1004900:three_prime_UTR 5.0%
!!! TTCTTTTAATTTTAATTATT+GGG - chr7_1:2553865-2553884 Msa1004900:three_prime_UTR 5.0%
!!! GGGTTTTTGCTTCGGTTTGG+GGG + chr7_1:2553674-2553693 None:intergenic 50.0%
!! GGGGTTTTTGCTTCGGTTTG+GGG + chr7_1:2553675-2553694 None:intergenic 50.0%
! GAGGGGTTTTTGCTTCGGTT+TGG + chr7_1:2553677-2553696 None:intergenic 50.0%
! TGGAGGAGGGGTTTTTGCTT+CGG + chr7_1:2553682-2553701 None:intergenic 50.0%
CCGTATCTTGAGCGTTCACT+TGG + chr7_1:2553790-2553809 None:intergenic 50.0%
CGACGTATCAGTGTCGTATC+AGG + chr7_1:2553958-2553977 None:intergenic 50.0%
GGGGTGATATGGCAGAATTG+TGG - chr7_1:2555152-2555171 Msa1004900:intron 50.0%
GAGGCAAAGAACTTGCAGGT+TGG + chr7_1:2555869-2555888 None:intergenic 50.0%
! TACTGTCCGACAGTTGATGC+AGG + chr7_1:2555915-2555934 None:intergenic 50.0%
GGAGAATCCAATCTTGCGCA+AGG - chr7_1:2556021-2556040 Msa1004900:CDS 50.0%
TACAGGACCTTGCGCAAGAT+TGG + chr7_1:2556031-2556050 None:intergenic 50.0%
! TACGTAGTGGGAGGAGTTAC+AGG + chr7_1:2556048-2556067 None:intergenic 50.0%
! TCAGATGCTTACGTAGTGGG+AGG + chr7_1:2556057-2556076 None:intergenic 50.0%
AGTGTGGTGCCTGACACATA+TGG - chr7_1:2556261-2556280 Msa1004900:intron 50.0%
TCAGCTTGGCCATATGTGTC+AGG + chr7_1:2556273-2556292 None:intergenic 50.0%
TAGAAATGGGGGGAGGAAGT+TGG - chr7_1:2556343-2556362 Msa1004900:intron 50.0%
AGAAATGGGGGGAGGAAGTT+GGG - chr7_1:2556344-2556363 Msa1004900:intron 50.0%
! TGCTGGAGCTTCAGCTTGTT+CGG + chr7_1:2556966-2556985 None:intergenic 50.0%
GTTGCTGCATCCACCAATGT+TGG - chr7_1:2556986-2557005 Msa1004900:intron 50.0%
TTCTTCCTGCCCAACATTGG+TGG + chr7_1:2556999-2557018 None:intergenic 50.0%
AGGGAACAAGTTCAGTGGGT+TGG + chr7_1:2557077-2557096 None:intergenic 50.0%
CCTGAGGGAACAAGTTCAGT+GGG + chr7_1:2557081-2557100 None:intergenic 50.0%
ACCTGAGGGAACAAGTTCAG+TGG + chr7_1:2557082-2557101 None:intergenic 50.0%
CAGTTCACAGTACACACCTG+AGG + chr7_1:2557097-2557116 None:intergenic 50.0%
GCACCATTGTTCTCAAGGCT+TGG + chr7_1:2557347-2557366 None:intergenic 50.0%
TTCTTTGCAGCCCATGCTTC+AGG - chr7_1:2557457-2557476 Msa1004900:CDS 50.0%
CACACCACAAGCAGATGCAT+AGG - chr7_1:2557755-2557774 Msa1004900:intron 50.0%
TGACCCTATGCATCTGCTTG+TGG + chr7_1:2557762-2557781 None:intergenic 50.0%
AGGAACCTAGAGGGACAGTT+GGG - chr7_1:2557913-2557932 Msa1004900:intron 50.0%
GGGGTGATAGTAATGGTCTG+AGG + chr7_1:2557949-2557968 None:intergenic 50.0%
TATCACCCCAGAAGAGAACG+AGG - chr7_1:2557960-2557979 Msa1004900:intron 50.0%
AATGGCCTCGTTCTCTTCTG+GGG + chr7_1:2557968-2557987 None:intergenic 50.0%
GAATGGCCTCGTTCTCTTCT+GGG + chr7_1:2557969-2557988 None:intergenic 50.0%
TGAATGGCCTCGTTCTCTTC+TGG + chr7_1:2557970-2557989 None:intergenic 50.0%
AGAGAACGAGGCCATTCAAC+GGG - chr7_1:2557972-2557991 Msa1004900:intron 50.0%
GTTCGACCGAGATCTTGTGT+TGG - chr7_1:2558330-2558349 Msa1004900:intron 50.0%
TCTGGCAGCCAACTACCTAT+TGG - chr7_1:2558384-2558403 Msa1004900:intron 50.0%
AGAAATCACCACCGCGCACA+CGG + chr7_1:2553705-2553724 None:intergenic 55.0%
GCGCGGTGGTGATTTCTGAT+CGG - chr7_1:2553708-2553727 Msa1004900:three_prime_UTR 55.0%
GGTGTGTCCGACAATAGACG+TGG + chr7_1:2554097-2554116 None:intergenic 55.0%
!! AGGCTGAGGTGTTGACGAAG+GGG + chr7_1:2555892-2555911 None:intergenic 55.0%
!! GAGGCTGAGGTGTTGACGAA+GGG + chr7_1:2555893-2555912 None:intergenic 55.0%
! ACAGTTGATGCAGGAGGCTG+AGG + chr7_1:2555906-2555925 None:intergenic 55.0%
CAGCCTCCTGCATCAACTGT+CGG - chr7_1:2555906-2555925 Msa1004900:CDS 55.0%
! TGTCCGACAGTTGATGCAGG+AGG + chr7_1:2555912-2555931 None:intergenic 55.0%
! CTGGAGCTTCAGCTTGTTCG+GGG + chr7_1:2556964-2556983 None:intergenic 55.0%
! GCTGGAGCTTCAGCTTGTTC+GGG + chr7_1:2556965-2556984 None:intergenic 55.0%
! TTGGTGGATGCAGCAACTGC+TGG + chr7_1:2556983-2557002 None:intergenic 55.0%
TGCATCCACCAATGTTGGGC+AGG - chr7_1:2556991-2557010 Msa1004900:intron 55.0%
AACAGCAGGCACAGCTGGTT+GGG + chr7_1:2557044-2557063 None:intergenic 55.0%
AACCAGCTGTGCCTGCTGTT+GGG - chr7_1:2557044-2557063 Msa1004900:intron 55.0%
!! TTGGTGTTAGGCCCAACAGC+AGG + chr7_1:2557058-2557077 None:intergenic 55.0%
! CCCACTGAACTTGTTCCCTC+AGG - chr7_1:2557078-2557097 Msa1004900:intron 55.0%
CAGCCCATGCTTCAGGAACT+AGG - chr7_1:2557464-2557483 Msa1004900:CDS 55.0%
CAACTGTCCCTCTAGGTTCC+TGG + chr7_1:2557914-2557933 None:intergenic 55.0%
CAGGAACCTAGAGGGACAGT+TGG - chr7_1:2557912-2557931 Msa1004900:intron 55.0%
AAGCACCCAACTGTCCCTCT+AGG + chr7_1:2557921-2557940 None:intergenic 55.0%
AGAGGGACAGTTGGGTGCTT+TGG - chr7_1:2557921-2557940 Msa1004900:intron 55.0%
CGACCGAGATCTTGTGTTGG+AGG - chr7_1:2558333-2558352 Msa1004900:intron 55.0%
GGGGGAGGCAAAGAACTTGC+AGG + chr7_1:2555873-2555892 None:intergenic 60.0%
!! TGAGGTGTTGACGAAGGGGG+AGG + chr7_1:2555888-2555907 None:intergenic 60.0%
!! GGCTGAGGTGTTGACGAAGG+GGG + chr7_1:2555891-2555910 None:intergenic 60.0%
!! GGAGGCTGAGGTGTTGACGA+AGG + chr7_1:2555894-2555913 None:intergenic 60.0%
TGGGGGGAGGAAGTTGGGAT+CGG - chr7_1:2556349-2556368 Msa1004900:intron 60.0%
CAACAGCAGGCACAGCTGGT+TGG + chr7_1:2557045-2557064 None:intergenic 60.0%
CAACCAGCTGTGCCTGCTGT+TGG - chr7_1:2557043-2557062 Msa1004900:intron 60.0%
AATCACCACCGCGCACACGG+TGG + chr7_1:2553702-2553721 None:intergenic 65.0%
TGGGGCAGCTGAAGCAGCAG+AGG + chr7_1:2555538-2555557 None:intergenic 65.0%
! TGCTGCTTCAGCTGCCCCAC+CGG - chr7_1:2555539-2555558 Msa1004900:intron 65.0%
GGGGGGAGGAAGTTGGGATC+GGG - chr7_1:2556350-2556369 Msa1004900:intron 65.0%
GGGCTGGAGGCTGAGCTGAA+GGG + chr7_1:2557024-2557043 None:intergenic 65.0%
! TGGGCTGGAGGCTGAGCTGA+AGG + chr7_1:2557025-2557044 None:intergenic 65.0%
ACCGCGCACACGGTGGAGGA+GGG + chr7_1:2553695-2553714 None:intergenic 70.0%
! GGCACAGCTGGTTGGGCTGG+AGG + chr7_1:2557037-2557056 None:intergenic 70.0%
GCAGGCACAGCTGGTTGGGC+TGG + chr7_1:2557040-2557059 None:intergenic 70.0%
GGCCCAACAGCAGGCACAGC+TGG + chr7_1:2557049-2557068 None:intergenic 70.0%
CCGCGCACACGGTGGAGGAG+GGG + chr7_1:2553694-2553713 None:intergenic 75.0%
CCCCTCCTCCACCGTGTGCG+CGG - chr7_1:2553691-2553710 Msa1004900:three_prime_UTR 75.0%
CACCGCGCACACGGTGGAGG+AGG + chr7_1:2553696-2553715 None:intergenic 75.0%
CTCCTCCACCGTGTGCGCGG+TGG - chr7_1:2553694-2553713 Msa1004900:three_prime_UTR 75.0%
CACCACCGCGCACACGGTGG+AGG + chr7_1:2553699-2553718 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 2553623 2558723 2553623 ID=Msa1004900;Name=Msa1004900
chr7_1 mRNA 2553623 2558723 2553623 ID=Msa1004900-mRNA-1;Parent=Msa1004900;Name=Msa1004900-mRNA-1;_AED=0.05;_eAED=0.05;_QI=120|1|1|1|1|1|12|291|375
chr7_1 exon 2553623 2554030 2553623 ID=Msa1004900-mRNA-1:exon:1049;Parent=Msa1004900-mRNA-1
chr7_1 exon 2554353 2554431 2554353 ID=Msa1004900-mRNA-1:exon:1048;Parent=Msa1004900-mRNA-1
chr7_1 exon 2554776 2554879 2554776 ID=Msa1004900-mRNA-1:exon:1047;Parent=Msa1004900-mRNA-1
chr7_1 exon 2554957 2555004 2554957 ID=Msa1004900-mRNA-1:exon:1046;Parent=Msa1004900-mRNA-1
chr7_1 exon 2555092 2555157 2555092 ID=Msa1004900-mRNA-1:exon:1045;Parent=Msa1004900-mRNA-1
chr7_1 exon 2555247 2555390 2555247 ID=Msa1004900-mRNA-1:exon:1044;Parent=Msa1004900-mRNA-1
chr7_1 exon 2555906 2556083 2555906 ID=Msa1004900-mRNA-1:exon:1043;Parent=Msa1004900-mRNA-1
chr7_1 exon 2556282 2556326 2556282 ID=Msa1004900-mRNA-1:exon:1042;Parent=Msa1004900-mRNA-1
chr7_1 exon 2556415 2556485 2556415 ID=Msa1004900-mRNA-1:exon:1041;Parent=Msa1004900-mRNA-1
chr7_1 exon 2556786 2556833 2556786 ID=Msa1004900-mRNA-1:exon:1040;Parent=Msa1004900-mRNA-1
chr7_1 exon 2557399 2557560 2557399 ID=Msa1004900-mRNA-1:exon:1039;Parent=Msa1004900-mRNA-1
chr7_1 exon 2558538 2558723 2558538 ID=Msa1004900-mRNA-1:exon:1038;Parent=Msa1004900-mRNA-1
chr7_1 five_prime_UTR 2558604 2558723 2558604 ID=Msa1004900-mRNA-1:five_prime_utr;Parent=Msa1004900-mRNA-1
chr7_1 CDS 2558538 2558603 2558538 ID=Msa1004900-mRNA-1:cds;Parent=Msa1004900-mRNA-1
chr7_1 CDS 2557399 2557560 2557399 ID=Msa1004900-mRNA-1:cds;Parent=Msa1004900-mRNA-1
chr7_1 CDS 2556786 2556833 2556786 ID=Msa1004900-mRNA-1:cds;Parent=Msa1004900-mRNA-1
chr7_1 CDS 2556415 2556485 2556415 ID=Msa1004900-mRNA-1:cds;Parent=Msa1004900-mRNA-1
chr7_1 CDS 2556282 2556326 2556282 ID=Msa1004900-mRNA-1:cds;Parent=Msa1004900-mRNA-1
chr7_1 CDS 2555906 2556083 2555906 ID=Msa1004900-mRNA-1:cds;Parent=Msa1004900-mRNA-1
chr7_1 CDS 2555247 2555390 2555247 ID=Msa1004900-mRNA-1:cds;Parent=Msa1004900-mRNA-1
chr7_1 CDS 2555092 2555157 2555092 ID=Msa1004900-mRNA-1:cds;Parent=Msa1004900-mRNA-1
chr7_1 CDS 2554957 2555004 2554957 ID=Msa1004900-mRNA-1:cds;Parent=Msa1004900-mRNA-1
chr7_1 CDS 2554776 2554879 2554776 ID=Msa1004900-mRNA-1:cds;Parent=Msa1004900-mRNA-1
chr7_1 CDS 2554353 2554431 2554353 ID=Msa1004900-mRNA-1:cds;Parent=Msa1004900-mRNA-1
chr7_1 CDS 2553914 2554030 2553914 ID=Msa1004900-mRNA-1:cds;Parent=Msa1004900-mRNA-1
chr7_1 three_prime_UTR 2553623 2553913 2553623 ID=Msa1004900-mRNA-1:three_prime_utr;Parent=Msa1004900-mRNA-1
Gene Sequence

>Msa1004900

ATGAAGATTAACGTGAAGACTCTTAAGGGAACTCACTTTGAGATCCAAGTGAACGCTCAAGATACGGTTGGCGATGTGAAGAAAAATATAGAGGGAGCACAGGGTGCTGCTGTTTACCCTGCTGCACAACAAATGCTTATTCATCAAGGAAAAGTGCTTAAGGATGAGACTACCTTGGAAGAAAATCAAGTTGCTGAGAATAGTTTTGTCGTGATCATGTTGTCTAAGAATAAGGTATCATCAAGTGGAGCCTCTGCTGCTTCAGCTGCCCCACCGGCAGCCCAACCTGCAAGTTCTTTGCCTCCCCCTTCGTCAACACCTCAGCCTCCTGCATCAACTGTCGGACAGGGAGAATCCAATCTTGCGCAAGGTCCTGTAACTCCTCCCACTACTGTGGTGCCTGACACATATGGCCAAGCTGAATCTAATCTCATTGCTGGAAGTACTTTAGAACCAACTATCCAACAAATTCTAGAAATGGGGGGAGGAAGTTGGGATCGGGACACTGTGATCCGAGCTCTTCGTGCTGCATATAATAATCCCGAAAGAGCTGTTGAATATCTATATTCTGGCATCCCCGAACAAGCTGAAGCTCCAGCAGTTGCTGCATCCACCAATGTTGGGCAGGAAGAAAACCCTTCAGCTCAGCCTCCAGCCCAACCAGCTGTGCCTGCTGTTGGGCCTAACACCAACCCACTGAACTTGTTCCCTCAGGGCATTCCCAATTTGGGTGCAAATGAAAATGCAGGTGACTTGGAATTTCTGCGAAACAGTCAACAGTTCCAAGCCTTGAGAACAATGGTGCAAGCAAACCCTCAAATCTTGCAGCCCATGCTTCAGGAACTAGGAAAACAAAATCCAAACCTAATGGAACTCATCCAAGAGCATCAAGCTGACTTCTTACGTCTTATAAATGAGCCTGGAGGCGAAGAGAACCTAGAGGGACAGTTGGGTGCTTTGGCTCCTCAGACCATTACTATCACCCCAGAAGAGAACGAGGCCATTCAACGGCTTGAGGATATGGGGTTCGACCGAGATCTTGTGTTGGAGGTGTTCTTTGCGTGCAATAAAAACGAGGATCTGGCAGCCAACTACCTATTGGATCACCAAAATGAGTTTGATGATTAG

Protein sequence

>Msa1004900

MKINVKTLKGTHFEIQVNAQDTVGDVKKNIEGAQGAAVYPAAQQMLIHQGKVLKDETTLEENQVAENSFVVIMLSKNKVSSSGASAASAAPPAAQPASSLPPPSSTPQPPASTVGQGESNLAQGPVTPPTTVVPDTYGQAESNLIAGSTLEPTIQQILEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQAEAPAVAASTNVGQEENPSAQPPAQPAVPAVGPNTNPLNLFPQGIPNLGANENAGDLEFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPNLMELIQEHQADFLRLINEPGGEENLEGQLGALAPQTITITPEENEAIQRLEDMGFDRDLVLEVFFACNKNEDLAANYLLDHQNEFDD*