AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1429360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429360 MtrunA17_Chr3g0133221 91.071 280 3 2 1 280 1 258 0.0 512
Msa1429360 MtrunA17_Chr8g0367701 71.667 180 51 0 100 279 90 269 1.90e-98 290
Msa1429360 MtrunA17_Chr7g0251801 47.475 198 94 3 81 277 86 274 4.14e-64 202
Msa1429360 MtrunA17_Chr2g0315771 47.030 202 102 3 82 278 25 226 3.58e-61 193
Msa1429360 MtrunA17_Chr1g0162171 39.623 159 95 1 120 277 62 220 1.34e-43 148
Msa1429360 MtrunA17_Chr6g0481891 38.994 159 96 1 120 277 38 196 2.21e-42 144
Msa1429360 MtrunA17_Chr8g0388871 37.654 162 97 2 119 277 22 182 3.03e-40 138
Msa1429360 MtrunA17_Chr1g0212091 36.413 184 107 3 96 277 43 218 4.02e-40 139
Msa1429360 MtrunA17_Chr1g0212121 35.849 159 101 1 120 277 57 215 5.46e-37 130
Msa1429360 MtrunA17_Chr1g0212171 35.625 160 102 1 119 277 59 218 1.22e-36 130
Msa1429360 MtrunA17_Chr1g0212181 35.583 163 103 2 120 280 57 219 3.61e-35 126
Msa1429360 MtrunA17_Chr1g0212111 43.396 106 59 1 173 277 49 154 3.95e-25 98.6
Msa1429360 MtrunA17_Chr1g0212131 41.071 56 33 0 222 277 6 61 8.15e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429360 AT1G28200.1 72.951 244 57 2 37 280 23 257 2.00e-123 353
Msa1429360 AT1G28200.2 72.951 244 57 2 37 280 23 257 2.00e-123 353
Msa1429360 AT2G22475.1 72.727 198 53 1 83 279 96 293 5.20e-110 320
Msa1429360 AT2G22475.2 72.603 146 39 1 83 227 96 241 9.06e-77 234
Msa1429360 AT4G40100.1 57.789 199 47 4 83 279 55 218 4.90e-73 223
Msa1429360 AT5G13200.1 47.644 191 91 3 84 273 74 256 4.94e-59 189
Msa1429360 AT4G01600.1 42.211 199 108 3 83 277 29 224 1.04e-54 177
Msa1429360 AT4G01600.3 42.135 178 101 1 102 277 8 185 8.12e-52 168
Msa1429360 AT4G01600.2 41.206 199 105 4 83 277 29 219 1.08e-50 166
Msa1429360 AT5G23350.1 34.259 216 133 4 67 277 2 213 6.38e-40 138
Msa1429360 AT5G23360.1 36.875 160 98 2 120 277 47 205 1.13e-38 135
Msa1429360 AT5G23370.1 33.333 219 131 6 67 277 2 213 3.77e-38 134
Msa1429360 AT5G08350.1 33.831 201 116 4 79 277 27 212 4.56e-38 134
Msa1429360 AT5G13200.2 46.479 142 67 3 84 224 74 207 2.36e-37 132

Find 108 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCGTTGTTACTTGTTTC+TGG 0.126004 tig0026500:-7418 Msa1429360:three_prime_UTR
CCGTTGACAATCATGAATTT+TGG 0.145817 tig0026500:-7661 Msa1429360:CDS
AAATAATAATTTGACGGTTT+TGG 0.155065 tig0026500:-11724 Msa1429360:five_prime_UTR
TGAAAGATGTTCTTGGAAAA+TGG 0.239709 tig0026500:-11138 Msa1429360:CDS
GAATCAGAGTGTTGGGGTTT+GGG 0.276522 tig0026500:+11445 None:intergenic
AGCAAGATCTTCAGCCTTCT+TGG 0.287689 tig0026500:+11093 None:intergenic
TTGTGTTGGTGGGTTGGACT+TGG 0.298593 tig0026500:+11488 None:intergenic
AGAATCAGAGTGTTGGGGTT+TGG 0.300088 tig0026500:+11444 None:intergenic
ACGTCGTTTGGGTCGAGTTT+AGG 0.310396 tig0026500:+11391 None:intergenic
TTTAGGATACGGAGCGTAAT+CGG 0.313258 tig0026500:+11408 None:intergenic
GGTGGTGGTGCGACGTCGTT+TGG 0.326020 tig0026500:+11379 None:intergenic
AAATGTCAATCAGTGCCTTC+AGG 0.326175 tig0026500:-11865 Msa1429360:five_prime_UTR
ATATTATTACATTCTAAATC+TGG 0.330201 tig0026500:-7368 Msa1429360:three_prime_UTR
TCAATTCAAACCCAAGTTGA+TGG 0.340780 tig0026500:+11614 None:intergenic
ATTTAAACATGATAGTTATA+TGG 0.356108 tig0026500:-7315 Msa1429360:three_prime_UTR
GATTCGGTGAAAGATGTTCT+TGG 0.357881 tig0026500:-11145 Msa1429360:CDS
TGCTACCTCTCCACCTCTGC+TGG 0.362383 tig0026500:-10029 Msa1429360:CDS
CTCTTAGCAGAAGTGGGTTC+GGG 0.375941 tig0026500:+11265 None:intergenic
GACTCAATGGAGCTATTATA+AGG 0.381490 tig0026500:-9922 Msa1429360:intron
GCAGAAGTGGGTTCGGGAAC+TGG 0.387440 tig0026500:+11271 None:intergenic
TTAGGATACGGAGCGTAATC+GGG 0.390438 tig0026500:+11409 None:intergenic
TACTTCCTTAGTCTAGTTTG+TGG 0.390817 tig0026500:-7468 Msa1429360:three_prime_UTR
GGGTTGGCTTTGCTTGTGGA+TGG 0.392668 tig0026500:+7710 None:intergenic
AGAGTGTTGGGGTTTGGGAT+TGG 0.396714 tig0026500:+11450 None:intergenic
CACCTCTGCTGGACCTGTCA+TGG 0.396719 tig0026500:-10018 Msa1429360:CDS
GAAAGATGTTCTTGGAAAAT+GGG 0.402168 tig0026500:-11137 Msa1429360:CDS
TGCTCAGGGAACAAAAGTTC+TGG 0.404565 tig0026500:-10129 Msa1429360:CDS
ATCAACACAGACCTCATGTT+TGG 0.406142 tig0026500:+7539 None:intergenic
ACTCTTAGCAGAAGTGGGTT+CGG 0.407099 tig0026500:+11264 None:intergenic
GCAACAGGTGGTGGTGGTGG+TGG 0.410841 tig0026500:+11364 None:intergenic
TACTACTCATATTGTTGACT+TGG 0.419934 tig0026500:+11551 None:intergenic
TTGTGTTTGTGTTGGTGGGT+TGG 0.423984 tig0026500:+11482 None:intergenic
ATTGAGTCTGGTCACCAGTC+TGG 0.437061 tig0026500:+9937 None:intergenic
GTGTTTGTGTTTGTGTTGGT+GGG 0.438866 tig0026500:+11478 None:intergenic
AAGAAGGCTGAAGATCTTGC+TGG 0.439141 tig0026500:-11091 Msa1429360:CDS
GGTTGGCTTTGCTTGTGGAT+GGG 0.441303 tig0026500:+7711 None:intergenic
TTCCATAAAACAGTGAAAAC+AGG 0.443896 tig0026500:-10185 Msa1429360:intron
TGTGTTTGTGTTTGTGTTGG+TGG 0.453606 tig0026500:+11477 None:intergenic
TGCTGTGGGAAGAATTGCTC+AGG 0.454151 tig0026500:-10144 Msa1429360:CDS
AGAGTGAGAATCAGAGTGTT+GGG 0.455084 tig0026500:+11438 None:intergenic
GGGCATGGTGGTGGCAGCAT+CGG 0.455840 tig0026500:+11324 None:intergenic
AGTTCAAAATAATAATTTGA+CGG 0.461591 tig0026500:-11730 Msa1429360:five_prime_UTR
TGTGTTGGTGGGTTGGACTT+GGG 0.461657 tig0026500:+11489 None:intergenic
TTCAGAGAAAACCATCAACT+TGG 0.467782 tig0026500:-11625 Msa1429360:five_prime_UTR
TATAATAGCTCCATTGAGTC+TGG 0.472016 tig0026500:+9925 None:intergenic
GTGGGTTCGGGAACTGGTGC+AGG 0.472656 tig0026500:+11277 None:intergenic
TGGACTTGGGCTTGAACATG+AGG 0.476251 tig0026500:+11502 None:intergenic
GTTTGTGTTTGTGTTTGTGT+TGG 0.477634 tig0026500:+11474 None:intergenic
GTAGCAACAGGTGGTGGTGG+TGG 0.480688 tig0026500:+11361 None:intergenic
ACTACTCATATTGTTGACTT+GGG 0.480812 tig0026500:+11552 None:intergenic
GGGATTAGATTCGGCGGGCA+TGG 0.481538 tig0026500:+11309 None:intergenic
ACCTCTGCTGGACCTGTCAT+GGG 0.481952 tig0026500:-10017 Msa1429360:CDS
GCAGTCTCGCTGATACACTA+TGG 0.482340 tig0026500:-7585 Msa1429360:exon
TCGATCGATTTGTTGTAAGT+TGG 0.489993 tig0026500:-7342 Msa1429360:three_prime_UTR
AGATTCGGCGGGCATGGTGG+TGG 0.492264 tig0026500:+11315 None:intergenic
CATGGTGGTGGCAGCATCGG+TGG 0.493757 tig0026500:+11327 None:intergenic
GCGCGAGATTCAGTAGCAAC+AGG 0.494862 tig0026500:+11349 None:intergenic
AGTAGGGTTGGCTTTGCTTG+TGG 0.497012 tig0026500:+7706 None:intergenic
GTGGTGGTGCGACGTCGTTT+GGG 0.498600 tig0026500:+11380 None:intergenic
ATTGTTGACTTGGGGAGGAT+CGG 0.507858 tig0026500:+11561 None:intergenic
AACTGGTGCAGGAGAGACAT+AGG 0.514578 tig0026500:+11288 None:intergenic
AATGTCAATCAGTGCCTTCA+GGG 0.516355 tig0026500:-11864 Msa1429360:five_prime_UTR
TAGCTCCACAAACTAGACTA+AGG 0.517632 tig0026500:+7463 None:intergenic
TCAGTAGCAACAGGTGGTGG+TGG 0.526626 tig0026500:+11358 None:intergenic
GAAATTACTCTTAGCAGAAG+TGG 0.529017 tig0026500:+11258 None:intergenic
GAAAGATCGTTGAATTGAAG+AGG 0.529234 tig0026500:-11758 Msa1429360:five_prime_UTR
GATTCAGTAGCAACAGGTGG+TGG 0.532264 tig0026500:+11355 None:intergenic
AGACTGGTGACCAGACTCAA+TGG 0.534492 tig0026500:-9935 Msa1429360:CDS
AAATTACTCTTAGCAGAAGT+GGG 0.535463 tig0026500:+11259 None:intergenic
AGAGACATAGGGATTAGATT+CGG 0.541864 tig0026500:+11300 None:intergenic
TTTGGGTCGAGTTTAGGATA+CGG 0.542371 tig0026500:+11397 None:intergenic
TAGCCTAACCTCTGCCCTGA+AGG 0.542482 tig0026500:+11850 None:intergenic
CATGACAGGTCCAGCAGAGG+TGG 0.545232 tig0026500:+10019 None:intergenic
CTCATATTGTTGACTTGGGG+AGG 0.551649 tig0026500:+11556 None:intergenic
ACTGCTCGCAGCTGATGCAA+TGG 0.553859 tig0026500:+7737 None:intergenic
TCACCAGTCTGGTAAGAAAG+TGG 0.556592 tig0026500:+9948 None:intergenic
GAGAGTGAGAATCAGAGTGT+TGG 0.556618 tig0026500:+11437 None:intergenic
TGAACATGAGGTTGAACTTG+AGG 0.558806 tig0026500:+11514 None:intergenic
AACCCACTTTCTTACCAGAC+TGG 0.563921 tig0026500:-9951 Msa1429360:CDS
GTCAACAATATGAGTAGTAG+TGG 0.564010 tig0026500:-11547 Msa1429360:exon
TCAGAGAAAACCATCAACTT+GGG 0.565702 tig0026500:-11624 Msa1429360:five_prime_UTR
CCAAAATTCATGATTGTCAA+CGG 0.566250 tig0026500:+7661 None:intergenic
GAGTGAGAATCAGAGTGTTG+GGG 0.569409 tig0026500:+11439 None:intergenic
ACATAGGGATTAGATTCGGC+GGG 0.570583 tig0026500:+11304 None:intergenic
TAGGATACGGAGCGTAATCG+GGG 0.571711 tig0026500:+11410 None:intergenic
AATCAGTGCCTTCAGGGCAG+AGG 0.572910 tig0026500:-11858 Msa1429360:five_prime_UTR
GTGCCTTCAGGGCAGAGGTT+AGG 0.573375 tig0026500:-11853 Msa1429360:five_prime_UTR
ACAGCAGCATCAGCAAAACT+AGG 0.577655 tig0026500:+10161 None:intergenic
AAATACAAGACTCCCATGAC+AGG 0.580237 tig0026500:+10005 None:intergenic
GACATAGGGATTAGATTCGG+CGG 0.580305 tig0026500:+11303 None:intergenic
CAGGTCCAGCAGAGGTGGAG+AGG 0.582547 tig0026500:+10024 None:intergenic
ATTAGATTCGGCGGGCATGG+TGG 0.585883 tig0026500:+11312 None:intergenic
TTCTCTGAAACGTGAATACG+TGG 0.591351 tig0026500:+11639 None:intergenic
AGCTGCTGAAGCTACCAAGA+AGG 0.592291 tig0026500:-11107 Msa1429360:CDS
AAAGATGTTCTTGGAAAATG+GGG 0.592681 tig0026500:-11136 Msa1429360:CDS
CACCAGTCTGGTAAGAAAGT+GGG 0.607437 tig0026500:+9949 None:intergenic
CTACTCATATTGTTGACTTG+GGG 0.609204 tig0026500:+11553 None:intergenic
GGAACAAAAGTTCTGGCAGA+AGG 0.613260 tig0026500:-10122 Msa1429360:CDS
TTCAGGGCAGAGGTTAGGCT+AGG 0.620632 tig0026500:-11848 Msa1429360:five_prime_UTR
ACTGGTGCAGGAGAGACATA+GGG 0.634538 tig0026500:+11289 None:intergenic
TCCCATGACAGGTCCAGCAG+AGG 0.644056 tig0026500:+10016 None:intergenic
ACAAAAGTTCTGGCAGAAGG+TGG 0.648034 tig0026500:-10119 Msa1429360:CDS
AAGATCTTGCTGGAAACATG+TGG 0.657196 tig0026500:-11081 Msa1429360:CDS
ACATGAGGTTGAACTTGAGG+AGG 0.662022 tig0026500:+11517 None:intergenic
AGGATACGGAGCGTAATCGG+GGG 0.674476 tig0026500:+11411 None:intergenic
CGAGATTCAGTAGCAACAGG+TGG 0.675679 tig0026500:+11352 None:intergenic
CATGTAGTATACCAAACATG+AGG 0.682970 tig0026500:-7550 Msa1429360:three_prime_UTR
GCTGTGGGAAGAATTGCTCA+GGG 0.687709 tig0026500:-10143 Msa1429360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTAAATTA+AGG + tig0026500:7350-7369 None:intergenic 0.0%
!!! ATTTTAATTAATTTTATAGC+TGG - tig0026500:8892-8911 Msa1429360:intron 10.0%
!! AAAAAAAGTTAAAAAAGCAA+CGG - tig0026500:7378-7397 Msa1429360:three_prime_UTR 15.0%
!! AGTTCAAAATAATAATTTGA+CGG - tig0026500:7438-7457 Msa1429360:three_prime_UTR 15.0%
!! CTTAAATGAATTTCAATAAT+TGG + tig0026500:8151-8170 None:intergenic 15.0%
!!! TATTCATAAAATTTTGCTAT+AGG + tig0026500:9431-9450 None:intergenic 15.0%
!!! TTTAATTAACATGAGATTTT+TGG - tig0026500:9604-9623 Msa1429360:intron 15.0%
!!! TACATGTTTATTTTTTTTGA+AGG - tig0026500:9915-9934 Msa1429360:intron 15.0%
!! ACAAAAGGTTATAAAATTTA+GGG + tig0026500:10316-10335 None:intergenic 15.0%
!! AACAAAAGGTTATAAAATTT+AGG + tig0026500:10317-10336 None:intergenic 15.0%
!! AACAAAGGTTATAAAATTTA+GGG + tig0026500:10927-10946 None:intergenic 15.0%
!! AATGTAATCTATTAATCATA+CGG + tig0026500:11236-11255 None:intergenic 15.0%
!! ATATTATTACATTCTAAATC+TGG - tig0026500:11800-11819 Msa1429360:five_prime_UTR 15.0%
!! ATTTAAACATGATAGTTATA+TGG - tig0026500:11853-11872 Msa1429360:five_prime_UTR 15.0%
!!! AAATAATAATTTGACGGTTT+TGG - tig0026500:7444-7463 Msa1429360:three_prime_UTR 20.0%
!!! AATAATAATTTGACGGTTTT+GGG - tig0026500:7445-7464 Msa1429360:three_prime_UTR 20.0%
!!! CATTTTGATATTTGAATTCA+AGG - tig0026500:7500-7519 Msa1429360:three_prime_UTR 20.0%
!! TAATTGGAAGTAAAAGAATT+AGG + tig0026500:8135-8154 None:intergenic 20.0%
!! GCTATTCAATAAATATTTCT+TGG - tig0026500:8170-8189 Msa1429360:intron 20.0%
!! AATTAGAATAGATTGAATGA+AGG - tig0026500:8647-8666 Msa1429360:intron 20.0%
!! ATTAGAATAGATTGAATGAA+GGG - tig0026500:8648-8667 Msa1429360:intron 20.0%
!!! TAATCTCTACACTTTTTTAA+TGG + tig0026500:8727-8746 None:intergenic 20.0%
!!! ATTAATTTTATAGCTGGAAA+TGG - tig0026500:8898-8917 Msa1429360:intron 20.0%
!! TTGTTCTTTAATAACTGATT+TGG - tig0026500:9303-9322 Msa1429360:intron 20.0%
!! TAATCATCCAAAATAATTTC+AGG + tig0026500:9649-9668 None:intergenic 20.0%
!!! ATAGATTTTAGATGTATCTA+GGG - tig0026500:9858-9877 Msa1429360:intron 20.0%
!! TAATTCCTCGAAAAAAATAT+TGG + tig0026500:9897-9916 None:intergenic 20.0%
!! ATCTGATTATAACATTTGTT+TGG - tig0026500:10162-10181 Msa1429360:CDS 20.0%
!! TCTGATTATAACATTTGTTT+GGG - tig0026500:10163-10182 Msa1429360:CDS 20.0%
!!! TACTTTTAATCACAACAAAA+AGG + tig0026500:10555-10574 None:intergenic 20.0%
!! CAAGCAATTTATATTAAGAT+TGG - tig0026500:10622-10641 Msa1429360:intron 20.0%
!! AGATATATTGTATTGAGAAA+TGG - tig0026500:10779-10798 Msa1429360:intron 20.0%
!! CAACAAAGGTTATAAAATTT+AGG + tig0026500:10928-10947 None:intergenic 20.0%
!! TTGAGAATAAATGTTATCTT+TGG - tig0026500:11261-11280 Msa1429360:intron 20.0%
!!! GTCATATTTTTTCTATTGTT+TGG - tig0026500:11362-11381 Msa1429360:CDS 20.0%
!!! TCTGTATAAATTTTTCAGTA+GGG + tig0026500:11481-11500 None:intergenic 20.0%
!!! ATCTGTATAAATTTTTCAGT+AGG + tig0026500:11482-11501 None:intergenic 20.0%
!!! AATCATGAATTTTGGTTTAT+GGG - tig0026500:11515-11534 Msa1429360:CDS 20.0%
!! TAAAGTATCTGCAAAATCAA+AGG + tig0026500:8003-8022 None:intergenic 25.0%
!! TTTTGCAGATACTTTAGATT+CGG - tig0026500:8007-8026 Msa1429360:intron 25.0%
!! AATTTTACTTTGTATGTGCA+TGG - tig0026500:8261-8280 Msa1429360:intron 25.0%
!!! CACTTATTTTATTCTAGTGT+TGG + tig0026500:8466-8485 None:intergenic 25.0%
! CTAATTACGACAAAATTTAG+AGG + tig0026500:8633-8652 None:intergenic 25.0%
! TCAGTTATTAAAGAACAAAG+CGG + tig0026500:9301-9320 None:intergenic 25.0%
!! TGATTATTTCTCAATACTAG+AGG - tig0026500:9365-9384 Msa1429360:intron 25.0%
! ATTAAAAAATCCTCAAATGC+TGG + tig0026500:9590-9609 None:intergenic 25.0%
! AAGTAATACGTATCATTGTT+TGG - tig0026500:9683-9702 Msa1429360:intron 25.0%
!! CATCTAAAATCTATGAGTAT+TGG + tig0026500:9852-9871 None:intergenic 25.0%
!! CATAGATTTTAGATGTATCT+AGG - tig0026500:9857-9876 Msa1429360:intron 25.0%
!!! TTTTTTTGAAGGATTTTTCG+AGG - tig0026500:9926-9945 Msa1429360:CDS 25.0%
!!! GAACAAGTAGCTATTTTTTT+TGG + tig0026500:10046-10065 None:intergenic 25.0%
! CTGATTATAACATTTGTTTG+GGG - tig0026500:10164-10183 Msa1429360:CDS 25.0%
! TGATTATAACATTTGTTTGG+GGG - tig0026500:10165-10184 Msa1429360:CDS 25.0%
! ACTTTAAACCAAACCAATAT+CGG + tig0026500:10409-10428 None:intergenic 25.0%
! TCATATATGTTTCCCAATAT+TGG - tig0026500:11036-11055 Msa1429360:intron 25.0%
!! ACATAATTCTTTTGATGTTG+AGG - tig0026500:11102-11121 Msa1429360:CDS 25.0%
!! CATAATTCTTTTGATGTTGA+GGG - tig0026500:11103-11122 Msa1429360:CDS 25.0%
! GAATAAATGTTATCTTTGGA+TGG - tig0026500:11265-11284 Msa1429360:intron 25.0%
! ATTAGTGACTACACTTATAT+GGG - tig0026500:11290-11309 Msa1429360:CDS 25.0%
!!! TATAAATTTTTCAGTAGGGT+TGG + tig0026500:11477-11496 None:intergenic 25.0%
!!! CAATCATGAATTTTGGTTTA+TGG - tig0026500:11514-11533 Msa1429360:CDS 25.0%
!!! TTTCATGTTTTTGTGAATTG+AGG + tig0026500:11662-11681 None:intergenic 25.0%
!! ACTACTCATATTGTTGACTT+GGG + tig0026500:7619-7638 None:intergenic 30.0%
! TACTACTCATATTGTTGACT+TGG + tig0026500:7620-7639 None:intergenic 30.0%
AAATTACTCTTAGCAGAAGT+GGG + tig0026500:7912-7931 None:intergenic 30.0%
TATCTGCAAAATCAAAGGAT+AGG + tig0026500:7998-8017 None:intergenic 30.0%
TGAAAGATGTTCTTGGAAAA+TGG - tig0026500:8030-8049 Msa1429360:intron 30.0%
GAAAGATGTTCTTGGAAAAT+GGG - tig0026500:8031-8050 Msa1429360:intron 30.0%
AAAGATGTTCTTGGAAAATG+GGG - tig0026500:8032-8051 Msa1429360:intron 30.0%
TAGAAAAATAGAGAGAGTTG+AGG - tig0026500:8535-8554 Msa1429360:intron 30.0%
CAGAAAATATGCTAGAAACT+AGG - tig0026500:8570-8589 Msa1429360:intron 30.0%
AAGTGTAGAGATTAATGAGT+TGG - tig0026500:8733-8752 Msa1429360:intron 30.0%
! AGAGATTAATGAGTTGGATA+AGG - tig0026500:8739-8758 Msa1429360:intron 30.0%
! AAGCTTTATCCAATTAAGTG+GGG + tig0026500:8813-8832 None:intergenic 30.0%
! CAAGCTTTATCCAATTAAGT+GGG + tig0026500:8814-8833 None:intergenic 30.0%
AGAAAACACAGAAAGTAAAC+TGG - tig0026500:8925-8944 Msa1429360:intron 30.0%
GTCAAAATAGCTCAAATGAA+TGG + tig0026500:8962-8981 None:intergenic 30.0%
TTCCATAAAACAGTGAAAAC+AGG - tig0026500:8983-9002 Msa1429360:intron 30.0%
GTAATGCAGTATACATATCA+TGG + tig0026500:9331-9350 None:intergenic 30.0%
AATGACTCCAACTAAATTTC+CGG + tig0026500:9485-9504 None:intergenic 30.0%
! ATTGATATTTGAGGTTCCAA+GGG + tig0026500:9540-9559 None:intergenic 30.0%
ACTGACATGATTGATATTTG+AGG + tig0026500:9549-9568 None:intergenic 30.0%
!!! GATTTTTGGAATTCGAAGAA+AGG - tig0026500:9618-9637 Msa1429360:intron 30.0%
!! TATTTTGGATGATTACCCTT+AGG - tig0026500:9654-9673 Msa1429360:intron 30.0%
! ATTTTGGATGATTACCCTTA+GGG - tig0026500:9655-9674 Msa1429360:intron 30.0%
GTATTACTTAAGATCCCTAA+GGG + tig0026500:9672-9691 None:intergenic 30.0%
! AAATCAAGGATTCCCTTTTA+CGG - tig0026500:9740-9759 Msa1429360:intron 30.0%
! TCCAAATTTGAAGTATGAGT+GGG - tig0026500:9795-9814 Msa1429360:intron 30.0%
TATTGGACATGTACTAGTAT+CGG + tig0026500:9835-9854 None:intergenic 30.0%
! ATTTTAGATGTATCTAGGGA+AGG - tig0026500:9862-9881 Msa1429360:intron 30.0%
! TTTTAGATGTATCTAGGGAA+GGG - tig0026500:9863-9882 Msa1429360:intron 30.0%
!!! ATGCTCCAATATTTTTTTCG+AGG - tig0026500:9889-9908 Msa1429360:intron 30.0%
! TTGGAGTAGTGTTTAAAATG+TGG + tig0026500:9964-9983 None:intergenic 30.0%
AAACACTACTCCAATACAAT+TGG - tig0026500:9970-9989 Msa1429360:CDS 30.0%
AACACTACTCCAATACAATT+GGG - tig0026500:9971-9990 Msa1429360:CDS 30.0%
ATGATGTATCCCAATTGTAT+TGG + tig0026500:9983-10002 None:intergenic 30.0%
! TTGTTCAACCTTTTTCTTCA+TGG - tig0026500:10060-10079 Msa1429360:CDS 30.0%
GATTATAACATTTGTTTGGG+GGG - tig0026500:10166-10185 Msa1429360:CDS 30.0%
ATTATAACATTTGTTTGGGG+GGG - tig0026500:10167-10186 Msa1429360:CDS 30.0%
! TAACGTAAACCTACTACTTT+TGG - tig0026500:10237-10256 Msa1429360:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG + tig0026500:10249-10268 None:intergenic 30.0%
! AACCTTTTGTTGATGTAACT+AGG - tig0026500:10326-10345 Msa1429360:intron 30.0%
AAGGAACTCTTAAAAACTCA+GGG + tig0026500:10369-10388 None:intergenic 30.0%
TAAGGAACTCTTAAAAACTC+AGG + tig0026500:10370-10389 None:intergenic 30.0%
TTTAAACCAAACCAATATCG+GGG + tig0026500:10407-10426 None:intergenic 30.0%
CTTTAAACCAAACCAATATC+GGG + tig0026500:10408-10427 None:intergenic 30.0%
! CATAATTCTTTTGATGTCGA+GGG - tig0026500:10460-10479 Msa1429360:intron 30.0%
TATTGAGAAATGGTAAAACG+TGG - tig0026500:10789-10808 Msa1429360:intron 30.0%
TTAAGGAAACCAAAAGTAGT+AGG + tig0026500:10249-10268 None:intergenic 30.0%
TAACCTTTGTTGATGTAACT+AGG - tig0026500:10936-10955 Msa1429360:intron 30.0%
TGGGAAACATATATGAACTA+AGG + tig0026500:11032-11051 None:intergenic 30.0%
! TATGTTTCCCAATATTGGTT+TGG - tig0026500:11041-11060 Msa1429360:intron 30.0%
CTTTGAACCAAACCAATATT+GGG + tig0026500:11051-11070 None:intergenic 30.0%
ACTTTGAACCAAACCAATAT+TGG + tig0026500:11052-11071 None:intergenic 30.0%
CATCAAAAGAATTATGTGTC+TGG + tig0026500:11099-11118 None:intergenic 30.0%
!! TTTTGATGTTGAGGGTATAA+AGG - tig0026500:11111-11130 Msa1429360:CDS 30.0%
AGGATACAATGAGTAAGAAT+GGG + tig0026500:11182-11201 None:intergenic 30.0%
GATTAGTGACTACACTTATA+TGG - tig0026500:11289-11308 Msa1429360:CDS 30.0%
! AGCTTTTCATCTTATGCATT+AGG - tig0026500:11400-11419 Msa1429360:CDS 30.0%
! TTTTCATCTTATGCATTAGG+TGG - tig0026500:11403-11422 Msa1429360:CDS 30.0%
CCAAAATTCATGATTGTCAA+CGG + tig0026500:11510-11529 None:intergenic 30.0%
!!! GAGCTATTTTAGTATTGTGA+TGG - tig0026500:11722-11741 Msa1429360:five_prime_UTR 30.0%
GAAAGATCGTTGAATTGAAG+AGG - tig0026500:7410-7429 Msa1429360:three_prime_UTR 35.0%
TTCAGAGAAAACCATCAACT+TGG - tig0026500:7543-7562 Msa1429360:three_prime_UTR 35.0%
TCAGAGAAAACCATCAACTT+GGG - tig0026500:7544-7563 Msa1429360:three_prime_UTR 35.0%
! TCAATTCAAACCCAAGTTGA+TGG + tig0026500:7557-7576 None:intergenic 35.0%
!! CTACTCATATTGTTGACTTG+GGG + tig0026500:7618-7637 None:intergenic 35.0%
GTCAACAATATGAGTAGTAG+TGG - tig0026500:7621-7640 Msa1429360:CDS 35.0%
GTTTGTGTTTGTGTTTGTGT+TGG + tig0026500:7697-7716 None:intergenic 35.0%
AGAGACATAGGGATTAGATT+CGG + tig0026500:7871-7890 None:intergenic 35.0%
GAAATTACTCTTAGCAGAAG+TGG + tig0026500:7913-7932 None:intergenic 35.0%
TTGTGATCAAGAGAAGATAG+AGG - tig0026500:8316-8335 Msa1429360:intron 35.0%
!! TTGTATGTGAAGGAAGTGTT+GGG - tig0026500:8430-8449 Msa1429360:intron 35.0%
AAATAAGTGTAGCAGAGATG+AGG - tig0026500:8477-8496 Msa1429360:intron 35.0%
ATATGCTAGAAACTAGGCTT+AGG - tig0026500:8576-8595 Msa1429360:intron 35.0%
TTTATCCAATTAAGTGGGGT+AGG + tig0026500:8809-8828 None:intergenic 35.0%
! CCAAGCTTTATCCAATTAAG+TGG + tig0026500:8815-8834 None:intergenic 35.0%
CCACTTAATTGGATAAAGCT+TGG - tig0026500:8812-8831 Msa1429360:intron 35.0%
! GACCTGTTTTCACTGTTTTA+TGG + tig0026500:8988-9007 None:intergenic 35.0%
!!! GTTTTAAGAAGTTGTTCCTC+TGG + tig0026500:9112-9131 None:intergenic 35.0%
TATAATAGCTCCATTGAGTC+TGG + tig0026500:9246-9265 None:intergenic 35.0%
GACTCAATGGAGCTATTATA+AGG - tig0026500:9246-9265 Msa1429360:intron 35.0%
AAATTTCCGGGACACAAATT+GGG + tig0026500:9472-9491 None:intergenic 35.0%
TAAATTTCCGGGACACAAAT+TGG + tig0026500:9473-9492 None:intergenic 35.0%
ATGACTCCAACTAAATTTCC+GGG + tig0026500:9484-9503 None:intergenic 35.0%
! GATTGATATTTGAGGTTCCA+AGG + tig0026500:9541-9560 None:intergenic 35.0%
ACTAATATCACCAGCATTTG+AGG - tig0026500:9577-9596 Msa1429360:intron 35.0%
! GGTGCTTCCTGAAATTATTT+TGG - tig0026500:9639-9658 Msa1429360:intron 35.0%
CGTATTACTTAAGATCCCTA+AGG + tig0026500:9673-9692 None:intergenic 35.0%
AAGGCAACATAACTGAACAT+GGG + tig0026500:9715-9734 None:intergenic 35.0%
AAAGGCAACATAACTGAACA+TGG + tig0026500:9716-9735 None:intergenic 35.0%
TGTTGCCTTTCTTGAAATCA+AGG - tig0026500:9726-9745 Msa1429360:intron 35.0%
GGAATCCTTGATTTCAAGAA+AGG + tig0026500:9734-9753 None:intergenic 35.0%
! ACTTCAAATTTGGAGTACCT+GGG + tig0026500:9789-9808 None:intergenic 35.0%
! TACTTCAAATTTGGAGTACC+TGG + tig0026500:9790-9809 None:intergenic 35.0%
! CTCCAAATTTGAAGTATGAG+TGG - tig0026500:9794-9813 Msa1429360:intron 35.0%
ACCCACTCATACTTCAAATT+TGG + tig0026500:9799-9818 None:intergenic 35.0%
! ACATGTACTAGTATCGGATA+CGG + tig0026500:9829-9848 None:intergenic 35.0%
! GAGTAGTGTTTAAAATGTGG+CGG + tig0026500:9961-9980 None:intergenic 35.0%
AGACAACACCATGAAGAAAA+AGG + tig0026500:10071-10090 None:intergenic 35.0%
TCGTGATAAACTAAGAAGCA+TGG - tig0026500:10090-10109 Msa1429360:CDS 35.0%
! CGTGATAAACTAAGAAGCAT+GGG - tig0026500:10091-10110 Msa1429360:CDS 35.0%
AGCAAAGGCTTCTCTTAAAT+AGG - tig0026500:10125-10144 Msa1429360:CDS 35.0%
TTATAACATTTGTTTGGGGG+GGG - tig0026500:10168-10187 Msa1429360:CDS 35.0%
AGCCTAGTTACATCAACAAA+AGG + tig0026500:10331-10350 None:intergenic 35.0%
GGGGAAACATATATGAACTA+AGG + tig0026500:10388-10407 None:intergenic 35.0%
CATATATGTTTCCCCGATAT+TGG - tig0026500:10393-10412 Msa1429360:intron 35.0%
CATCAAAAGAATTATGCGTC+TGG + tig0026500:10456-10475 None:intergenic 35.0%
! GCATAATTCTTTTGATGTCG+AGG - tig0026500:10459-10478 Msa1429360:intron 35.0%
GCAAGAATATGATAGGGATT+AGG - tig0026500:10514-10533 Msa1429360:intron 35.0%
! TAGCGTAAACCTACTACTTT+TGG - tig0026500:10850-10869 Msa1429360:intron 35.0%
AAGGAACTCCTAAAAACTCA+GGG + tig0026500:10979-10998 None:intergenic 35.0%
CAGGATACAATGAGTAAGAA+TGG + tig0026500:11183-11202 None:intergenic 35.0%
ACTCATTGTATCCTGAATTC+TGG - tig0026500:11188-11207 Msa1429360:intron 35.0%
CTCTTTAACTACCAGAATTC+AGG + tig0026500:11202-11221 None:intergenic 35.0%
! CCGTTGACAATCATGAATTT+TGG - tig0026500:11507-11526 Msa1429360:CDS 35.0%
CATGTAGTATACCAAACATG+AGG - tig0026500:11618-11637 Msa1429360:five_prime_UTR 35.0%
! TACTTCCTTAGTCTAGTTTG+TGG - tig0026500:11700-11719 Msa1429360:five_prime_UTR 35.0%
! CATTCGTTGTTACTTGTTTC+TGG - tig0026500:11750-11769 Msa1429360:five_prime_UTR 35.0%
!! TCGATCGATTTGTTGTAAGT+TGG - tig0026500:11826-11845 Msa1429360:five_prime_UTR 35.0%
AAATGTCAATCAGTGCCTTC+AGG - tig0026500:7303-7322 Msa1429360:three_prime_UTR 40.0%
AATGTCAATCAGTGCCTTCA+GGG - tig0026500:7304-7323 Msa1429360:three_prime_UTR 40.0%
!! TTCTCTGAAACGTGAATACG+TGG + tig0026500:7532-7551 None:intergenic 40.0%
TGAACATGAGGTTGAACTTG+AGG + tig0026500:7657-7676 None:intergenic 40.0%
! GTGTTTGTGTTTGTGTTGGT+GGG + tig0026500:7693-7712 None:intergenic 40.0%
TGTGTTTGTGTTTGTGTTGG+TGG + tig0026500:7694-7713 None:intergenic 40.0%
! AGAGTGAGAATCAGAGTGTT+GGG + tig0026500:7733-7752 None:intergenic 40.0%
! TTTAGGATACGGAGCGTAAT+CGG + tig0026500:7763-7782 None:intergenic 40.0%
! TTTGGGTCGAGTTTAGGATA+CGG + tig0026500:7774-7793 None:intergenic 40.0%
!! GATTCGGTGAAAGATGTTCT+TGG - tig0026500:8023-8042 Msa1429360:intron 40.0%
AAGATCTTGCTGGAAACATG+TGG - tig0026500:8087-8106 Msa1429360:intron 40.0%
TTACTTTGTATGTGCATGGC+TGG - tig0026500:8265-8284 Msa1429360:intron 40.0%
TACTTTGTATGTGCATGGCT+GGG - tig0026500:8266-8285 Msa1429360:intron 40.0%
AAGATAGAGGCCAATTAGAG+AGG - tig0026500:8329-8348 Msa1429360:intron 40.0%
GCAAACACATCCTCTCTAAT+TGG + tig0026500:8342-8361 None:intergenic 40.0%
AGAGGATGTGTTTGCATTTC+TGG - tig0026500:8347-8366 Msa1429360:intron 40.0%
! GTTGTATGTGAAGGAAGTGT+TGG - tig0026500:8429-8448 Msa1429360:intron 40.0%
AGGATCATGTGTTCAATGTG+TGG - tig0026500:8497-8516 Msa1429360:intron 40.0%
!!! AACTTTTGAGACTGTACCAG+AGG - tig0026500:9093-9112 Msa1429360:intron 40.0%
AAATACAAGACTCCCATGAC+AGG + tig0026500:9166-9185 None:intergenic 40.0%
AACAAAGCGGTAACAAGCAA+AGG + tig0026500:9288-9307 None:intergenic 40.0%
ATAAACCCCAATTTGTGTCC+CGG - tig0026500:9463-9482 Msa1429360:intron 40.0%
AATTTCCGGGACACAAATTG+GGG + tig0026500:9471-9490 None:intergenic 40.0%
TTGTGTCCCGGAAATTTAGT+TGG - tig0026500:9475-9494 Msa1429360:intron 40.0%
AAAATCACACTCTCTTCCCT+TGG - tig0026500:9521-9540 Msa1429360:intron 40.0%
GCTGGTGATATTAGTCGTTA+AGG + tig0026500:9572-9591 None:intergenic 40.0%
CATGCAAGACTACCGTAAAA+GGG + tig0026500:9755-9774 None:intergenic 40.0%
ACATGCAAGACTACCGTAAA+AGG + tig0026500:9756-9775 None:intergenic 40.0%
TATAACATTTGTTTGGGGGG+GGG - tig0026500:10169-10188 Msa1429360:CDS 40.0%
! ATGTTTCCCCGATATTGGTT+TGG - tig0026500:10398-10417 Msa1429360:intron 40.0%
TAGGGAAATGCTAAAGAGTG+CGG - tig0026500:10732-10751 Msa1429360:intron 40.0%
CAGCCTAGTTACATCAACAA+AGG + tig0026500:10332-10351 None:intergenic 40.0%
CAAGGAACTCCTAAAAACTC+AGG + tig0026500:10980-10999 None:intergenic 40.0%
GAATTTGAGAGAGAGATGCA+AGG + tig0026500:10998-11017 None:intergenic 40.0%
! ATGTTGAGGGTATAAAGGAG+TGG - tig0026500:11116-11135 Msa1429360:CDS 40.0%
AAAGGAGTGGAAGCTAACTA+AGG - tig0026500:11129-11148 Msa1429360:CDS 40.0%
ATCAACACAGACCTCATGTT+TGG + tig0026500:11632-11651 None:intergenic 40.0%
TAGCTCCACAAACTAGACTA+AGG + tig0026500:11708-11727 None:intergenic 40.0%
!! ATTGTTGACTTGGGGAGGAT+CGG + tig0026500:7610-7629 None:intergenic 45.0%
!! CTCATATTGTTGACTTGGGG+AGG + tig0026500:7615-7634 None:intergenic 45.0%
ACATGAGGTTGAACTTGAGG+AGG + tig0026500:7654-7673 None:intergenic 45.0%
! TTGTGTTTGTGTTGGTGGGT+TGG + tig0026500:7689-7708 None:intergenic 45.0%
!! GAATCAGAGTGTTGGGGTTT+GGG + tig0026500:7726-7745 None:intergenic 45.0%
!! AGAATCAGAGTGTTGGGGTT+TGG + tig0026500:7727-7746 None:intergenic 45.0%
!! GAGTGAGAATCAGAGTGTTG+GGG + tig0026500:7732-7751 None:intergenic 45.0%
GAGAGTGAGAATCAGAGTGT+TGG + tig0026500:7734-7753 None:intergenic 45.0%
TTAGGATACGGAGCGTAATC+GGG + tig0026500:7762-7781 None:intergenic 45.0%
ACATAGGGATTAGATTCGGC+GGG + tig0026500:7867-7886 None:intergenic 45.0%
GACATAGGGATTAGATTCGG+CGG + tig0026500:7868-7887 None:intergenic 45.0%
! ACTCTTAGCAGAAGTGGGTT+CGG + tig0026500:7907-7926 None:intergenic 45.0%
AGCAAGATCTTCAGCCTTCT+TGG + tig0026500:8078-8097 None:intergenic 45.0%
AAGAAGGCTGAAGATCTTGC+TGG - tig0026500:8077-8096 Msa1429360:intron 45.0%
ACTTTGTATGTGCATGGCTG+GGG - tig0026500:8267-8286 Msa1429360:intron 45.0%
ACCTGCGATGTTGTATGTGA+AGG - tig0026500:8420-8439 Msa1429360:intron 45.0%
TCCTTCACATACAACATCGC+AGG + tig0026500:8424-8443 None:intergenic 45.0%
GAAACTAGGCTTAGGTGCTT+TGG - tig0026500:8584-8603 Msa1429360:intron 45.0%
ATTAAGTGGGGTAGGCTACA+TGG + tig0026500:8801-8820 None:intergenic 45.0%
TGTAGCCTACCCCACTTAAT+TGG - tig0026500:8801-8820 Msa1429360:intron 45.0%
ACAGCAGCATCAGCAAAACT+AGG + tig0026500:9010-9029 None:intergenic 45.0%
!! TAGTTTTGCTGATGCTGCTG+TGG - tig0026500:9009-9028 Msa1429360:intron 45.0%
! AGTTTTGCTGATGCTGCTGT+GGG - tig0026500:9010-9029 Msa1429360:intron 45.0%
TGCTCAGGGAACAAAAGTTC+TGG - tig0026500:9039-9058 Msa1429360:intron 45.0%
! GGAACAAAAGTTCTGGCAGA+AGG - tig0026500:9046-9065 Msa1429360:intron 45.0%
! ACAAAAGTTCTGGCAGAAGG+TGG - tig0026500:9049-9068 Msa1429360:intron 45.0%
AACCCACTTTCTTACCAGAC+TGG - tig0026500:9217-9236 Msa1429360:intron 45.0%
CACCAGTCTGGTAAGAAAGT+GGG + tig0026500:9222-9241 None:intergenic 45.0%
TCACCAGTCTGGTAAGAAAG+TGG + tig0026500:9223-9242 None:intergenic 45.0%
TGCATGTTACCTATGAACCC+AGG - tig0026500:9769-9788 Msa1429360:intron 45.0%
! TTTGGAGTACCTGGGTTCAT+AGG + tig0026500:9781-9800 None:intergenic 45.0%
TGGTAGAGAAAGACTGTACG+AGG + tig0026500:10026-10045 None:intergenic 45.0%
TGGGCAACTGAATAGAGCAA+AGG - tig0026500:10110-10129 Msa1429360:CDS 45.0%
ATAACATTTGTTTGGGGGGG+GGG - tig0026500:10170-10189 Msa1429360:CDS 45.0%
AACAAGTGCCCTAAGGGTTA+GGG + tig0026500:10286-10305 None:intergenic 45.0%
TAACAAGTGCCCTAAGGGTT+AGG + tig0026500:10287-10306 None:intergenic 45.0%
CATGCTAACAAGTGCCCTAA+GGG + tig0026500:10292-10311 None:intergenic 45.0%
TCATGCTAACAAGTGCCCTA+AGG + tig0026500:10293-10312 None:intergenic 45.0%
ATTCTTGCAAGATGTGTGCG+AGG - tig0026500:10491-10510 Msa1429360:intron 45.0%
TTCTTGCAAGATGTGTGCGA+GGG - tig0026500:10492-10511 Msa1429360:intron 45.0%
TGCGAGGGCAAGAATATGAT+AGG - tig0026500:10507-10526 Msa1429360:intron 45.0%
GCGAGGGCAAGAATATGATA+GGG - tig0026500:10508-10527 Msa1429360:intron 45.0%
TAACAAGTGCCCTAAGGGTT+GGG + tig0026500:10287-10306 None:intergenic 45.0%
CATGCTAACAAGTGCCCTAA+GGG + tig0026500:10292-10311 None:intergenic 45.0%
TCATGCTAACAAGTGCCCTA+AGG + tig0026500:10293-10312 None:intergenic 45.0%
! AGCTCAAGCCCTGAGTTTTT+AGG - tig0026500:10358-10377 Msa1429360:intron 45.0%
GAGTGGAAGCTAACTAAGGT+GGG - tig0026500:11133-11152 Msa1429360:CDS 45.0%
!!! ATATTTTTATAAATATTGAT+TGG - tig0026500:10574-10593 Msa1429360:intron 5.0%
!! AAAATAATATATTAAACTTT+AGG - tig0026500:10713-10732 Msa1429360:intron 5.0%
!! AAATAATATATTAAACTTTA+GGG - tig0026500:10714-10733 Msa1429360:intron 5.0%
TGGACTTGGGCTTGAACATG+AGG + tig0026500:7669-7688 None:intergenic 50.0%
!! TGTGTTGGTGGGTTGGACTT+GGG + tig0026500:7682-7701 None:intergenic 50.0%
!! TTGTGTTGGTGGGTTGGACT+TGG + tig0026500:7683-7702 None:intergenic 50.0%
!! AGAGTGTTGGGGTTTGGGAT+TGG + tig0026500:7721-7740 None:intergenic 50.0%
TAGGATACGGAGCGTAATCG+GGG + tig0026500:7761-7780 None:intergenic 50.0%
ACGTCGTTTGGGTCGAGTTT+AGG + tig0026500:7780-7799 None:intergenic 50.0%
GATTCAGTAGCAACAGGTGG+TGG + tig0026500:7816-7835 None:intergenic 50.0%
CGAGATTCAGTAGCAACAGG+TGG + tig0026500:7819-7838 None:intergenic 50.0%
ACTGGTGCAGGAGAGACATA+GGG + tig0026500:7882-7901 None:intergenic 50.0%
AACTGGTGCAGGAGAGACAT+AGG + tig0026500:7883-7902 None:intergenic 50.0%
! CTCTTAGCAGAAGTGGGTTC+GGG + tig0026500:7906-7925 None:intergenic 50.0%
AGCTGCTGAAGCTACCAAGA+AGG - tig0026500:8061-8080 Msa1429360:intron 50.0%
ACTAGGCTTAGGTGCTTTGG+AGG - tig0026500:8587-8606 Msa1429360:intron 50.0%
TGCTGTGGGAAGAATTGCTC+AGG - tig0026500:9024-9043 Msa1429360:intron 50.0%
GCTGTGGGAAGAATTGCTCA+GGG - tig0026500:9025-9044 Msa1429360:intron 50.0%
ATTGAGTCTGGTCACCAGTC+TGG + tig0026500:9234-9253 None:intergenic 50.0%
AGACTGGTGACCAGACTCAA+TGG - tig0026500:9233-9252 Msa1429360:intron 50.0%
TAACATTTGTTTGGGGGGGG+GGG - tig0026500:10171-10190 Msa1429360:CDS 50.0%
ACAAGTGCCCTAAGGGTTAG+GGG + tig0026500:10285-10304 None:intergenic 50.0%
! TGCTAAAGAGTGCGGAGCAT+TGG - tig0026500:10740-10759 Msa1429360:intron 50.0%
CTAACAAGTGCCCTAAGGGT+TGG + tig0026500:10288-10307 None:intergenic 50.0%
GGAGTGGAAGCTAACTAAGG+TGG - tig0026500:11132-11151 Msa1429360:CDS 50.0%
!! GGTTGGCTTTGCTTGTGGAT+GGG + tig0026500:11460-11479 None:intergenic 50.0%
!! AGTAGGGTTGGCTTTGCTTG+TGG + tig0026500:11465-11484 None:intergenic 50.0%
GCAGTCTCGCTGATACACTA+TGG - tig0026500:11583-11602 Msa1429360:five_prime_UTR 50.0%
AATCAGTGCCTTCAGGGCAG+AGG - tig0026500:7310-7329 Msa1429360:three_prime_UTR 55.0%
TAGCCTAACCTCTGCCCTGA+AGG + tig0026500:7321-7340 None:intergenic 55.0%
TTCAGGGCAGAGGTTAGGCT+AGG - tig0026500:7320-7339 Msa1429360:three_prime_UTR 55.0%
AGGATACGGAGCGTAATCGG+GGG + tig0026500:7760-7779 None:intergenic 55.0%
! TCAGTAGCAACAGGTGGTGG+TGG + tig0026500:7813-7832 None:intergenic 55.0%
GCGCGAGATTCAGTAGCAAC+AGG + tig0026500:7822-7841 None:intergenic 55.0%
ATTAGATTCGGCGGGCATGG+TGG + tig0026500:7859-7878 None:intergenic 55.0%
!! GGCTTAGGTGCTTTGGAGGT+TGG - tig0026500:8591-8610 Msa1429360:intron 55.0%
ACCTCTGCTGGACCTGTCAT+GGG - tig0026500:9151-9170 Msa1429360:intron 55.0%
!! AGACTGTACGAGGAGCACTG+AGG + tig0026500:10016-10035 None:intergenic 55.0%
AACATTTGTTTGGGGGGGGG+GGG - tig0026500:10172-10191 Msa1429360:CDS 55.0%
! GGGGCTTAGGGCACTTGTTA+AGG + tig0026500:10266-10285 None:intergenic 55.0%
CCCTAAGGGTTAGGGGCTTA+GGG + tig0026500:10278-10297 None:intergenic 55.0%
CCCTAAGCCCCTAACCCTTA+GGG - tig0026500:10275-10294 Msa1429360:intron 55.0%
ACTGCTCGCAGCTGATGCAA+TGG + tig0026500:11434-11453 None:intergenic 55.0%
!! GGGTTGGCTTTGCTTGTGGA+TGG + tig0026500:11461-11480 None:intergenic 55.0%
GTGCCTTCAGGGCAGAGGTT+AGG - tig0026500:7315-7334 Msa1429360:three_prime_UTR 60.0%
! GTGGTGGTGCGACGTCGTTT+GGG + tig0026500:7791-7810 None:intergenic 60.0%
!! GTAGCAACAGGTGGTGGTGG+TGG + tig0026500:7810-7829 None:intergenic 60.0%
GGGATTAGATTCGGCGGGCA+TGG + tig0026500:7862-7881 None:intergenic 60.0%
! GCAGAAGTGGGTTCGGGAAC+TGG + tig0026500:7900-7919 None:intergenic 60.0%
TGCTACCTCTCCACCTCTGC+TGG - tig0026500:9139-9158 Msa1429360:intron 60.0%
CATGACAGGTCCAGCAGAGG+TGG + tig0026500:9152-9171 None:intergenic 60.0%
CACCTCTGCTGGACCTGTCA+TGG - tig0026500:9150-9169 Msa1429360:intron 60.0%
TCCCATGACAGGTCCAGCAG+AGG + tig0026500:9155-9174 None:intergenic 60.0%
GCCCTAAGCCCCTAACCCTT+AGG - tig0026500:10274-10293 Msa1429360:intron 60.0%
GCCCTAAGGGTTAGGGGCTT+AGG + tig0026500:10279-10298 None:intergenic 60.0%
! TGGGCGTAGGGCGCTTGTTA+AGG + tig0026500:10879-10898 None:intergenic 60.0%
TGCCCTAAGGGTTGGGCGTA+GGG + tig0026500:10891-10910 None:intergenic 60.0%
! GGTGGTGGTGCGACGTCGTT+TGG + tig0026500:7792-7811 None:intergenic 65.0%
!! GCAACAGGTGGTGGTGGTGG+TGG + tig0026500:7807-7826 None:intergenic 65.0%
!! CATGGTGGTGGCAGCATCGG+TGG + tig0026500:7844-7863 None:intergenic 65.0%
!! GGGCATGGTGGTGGCAGCAT+CGG + tig0026500:7847-7866 None:intergenic 65.0%
AGATTCGGCGGGCATGGTGG+TGG + tig0026500:7856-7875 None:intergenic 65.0%
GTGGGTTCGGGAACTGGTGC+AGG + tig0026500:7894-7913 None:intergenic 65.0%
CAGGTCCAGCAGAGGTGGAG+AGG + tig0026500:9147-9166 None:intergenic 65.0%
CGCCCTACGCCCAACCCTTA+GGG - tig0026500:10886-10905 Msa1429360:intron 65.0%
GTGCCCTAAGGGTTGGGCGT+AGG + tig0026500:10892-10911 None:intergenic 65.0%
GCGCCCTACGCCCAACCCTT+AGG - tig0026500:10885-10904 Msa1429360:intron 70.0%
Chromosome Type Strat End Strand Name
tig0026500 gene 7289 11901 7289 ID=Msa1429360;Name=Msa1429360
tig0026500 mRNA 7289 11901 7289 ID=Msa1429360-mRNA-1;Parent=Msa1429360;Name=Msa1429360-mRNA-1;_AED=0.03;_eAED=0.03;_QI=341|1|1|1|1|1|4|306|280
tig0026500 exon 7289 7768 7289 ID=Msa1429360-mRNA-1:exon:6481;Parent=Msa1429360-mRNA-1
tig0026500 exon 9923 10194 9923 ID=Msa1429360-mRNA-1:exon:6480;Parent=Msa1429360-mRNA-1
tig0026500 exon 11074 11175 11074 ID=Msa1429360-mRNA-1:exon:6479;Parent=Msa1429360-mRNA-1
tig0026500 exon 11266 11901 11266 ID=Msa1429360-mRNA-1:exon:6478;Parent=Msa1429360-mRNA-1
tig0026500 five_prime_UTR 11561 11901 11561 ID=Msa1429360-mRNA-1:five_prime_utr;Parent=Msa1429360-mRNA-1
tig0026500 CDS 11266 11560 11266 ID=Msa1429360-mRNA-1:cds;Parent=Msa1429360-mRNA-1
tig0026500 CDS 11074 11175 11074 ID=Msa1429360-mRNA-1:cds;Parent=Msa1429360-mRNA-1
tig0026500 CDS 9923 10194 9923 ID=Msa1429360-mRNA-1:cds;Parent=Msa1429360-mRNA-1
tig0026500 CDS 7595 7768 7595 ID=Msa1429360-mRNA-1:cds;Parent=Msa1429360-mRNA-1
tig0026500 three_prime_UTR 7289 7594 7289 ID=Msa1429360-mRNA-1:three_prime_utr;Parent=Msa1429360-mRNA-1
Gene Sequence

>Msa1429360

ATGAGTAGTAGTGGTGATCAACCTCCTCAAGTTCAACCTCATGTTCAAGCCCAAGTCCAACCCACCAACACAAACACAAACACAAACACCAATCCCAAACCCCAACACTCTGATTCTCACTCTCACACCCCCGATTACGCTCCGTATCCTAAACTCGACCCAAACGACGTCGCACCACCACCACCACCACCTGTTGCTACTGAATCTCGCGCCACCGATGCTGCCACCACCATGCCCGCCGAATCTAATCCCTATGTCTCTCCTGCACCAGTTCCCGAACCCACTTCTGCTAAGAATACTTTAGATTCGGTGAAAGATGTTCTTGGAAAATGGGGTAAGAAAGCTGCTGAAGCTACCAAGAAGGCTGAAGATCTTGCTGGAAACATGTGGCAACACTTGAAAACAGGTCCTAGTTTTGCTGATGCTGCTGTGGGAAGAATTGCTCAGGGAACAAAAGTTCTGGCAGAAGGTGGCTACGAGAAGATCTTTAGACAAACTTTTGAGACTGTACCAGAGGAACAACTTCTTAAAACATATGCATGCTACCTCTCCACCTCTGCTGGACCTGTCATGGGAGTCTTGTATTTGTCAACTGCTAAGCTCGCATTCTGTAGCGACAACCCACTTTCTTACCAGACTGGTGACCAGACTCAATGGAGCTATTATAAGGTGGTCATTCCATTGCATCAGCTGCGAGCAGTGAACCCATCCACAAGCAAAGCCAACCCTACTGAAAAATTTATACAGATTATCTCCGTTGACAATCATGAATTTTGGTTTATGGGCTTTGTGTACTACGACAGCGCTGTTAAACATATTCAAGAAGCATTGCAGTCTCGCTGA

Protein sequence

>Msa1429360

MSSSGDQPPQVQPHVQAQVQPTNTNTNTNTNPKPQHSDSHSHTPDYAPYPKLDPNDVAPPPPPPVATESRATDAATTMPAESNPYVSPAPVPEPTSAKNTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQTGDQTQWSYYKVVIPLHQLRAVNPSTSKANPTEKFIQIISVDNHEFWFMGFVYYDSAVKHIQEALQSR*